Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace
Updating <a href='https://github.com/reubendb/SWTools-BWCI/trunk/lammps@HEAD'>https://github.com/reubendb/SWTools-BWCI/trunk/lammps@HEAD</a> at revision HEAD
At revision 22

No changes for <a href='https://github.com/reubendb/SWTools-BWCI/trunk/lammps'>https://github.com/reubendb/SWTools-BWCI/trunk/lammps</a> since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins477452862585122841.sh
+ /usr/local/bin/jenkins_sync /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace/lammps
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
CI="true"

echo $PATH $SW_CONFIG $PYTHONPATH &gt; /dev/null
export SW_CONFIG=$SW_CONFIG
# added by tbouvet 1 line
#export PATH=/sw/tools/bin:$PATH

rm -f /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/.lock
cd /tmp
git clone <a href='https://github.com/reubendb/SWTools-BWCI'>https://github.com/reubendb/SWTools-BWCI</a>
cd SWTools-BWCI
cp -R lammps $SW_ROOT
cd /tmp
rm -rf SWTools-BWCI
cd $SW_ROOT
cd lammps/15May15/cle5.2_gnu4.9.3
# copy remodule with changes to work with gcc/4.9.3 after move to gcc/6.3.0
cp /u/system/bwjenkins/remodule.lammps remodule
swbuildwait

[SSH] executing...
Cloning into 'SWTools-BWCI'...
swbuild -s -a lammps -v 15May15 -b cle5.2_gnu4.9.3
# clear out old installation to prevent potential libtool chmod 
# commands from failing when reinstalled by another person
rm -rf bin lib include doc share man etc libexec info

#clear out status file since re-making
rm -f status
rm -rf $SRCDIR

tar -xf /sw/sources/${PACKAGE}/${VERSION}/${PACKAGE}_stable.tar.gz
cd $SRCDIR

cd src/MAKE

cat &gt; Makefile.xe6 &lt;&lt; EOF
SHELL = /bin/sh
.SUFFIXES: .cpp .d
CC =            CC
CCFLAGS =       -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64
SHFLAGS =       -fPIC
DEPFLAGS =      -M
LINK =          CC
LINKFLAGS =     -O
LIB =           -lquadmath
SIZE =          size
ARCHIVE =       ar
ARFLAGS =       -rc
SHLIBFLAGS =    -shared
LMP_INC =       -DLAMMPS_GZIP
MPI_INC =       -DMPICH_SKIP_MPICXX
MPI_PATH =
MPI_LIB =
FFT_INC =       -DFFT_FFTW3
FFT_PATH =
FFT_LIB = 
JPG_INC =
JPG_PATH =
JPG_LIB = 
EOF

tail -n 46 Makefile.mpi &gt;&gt; Makefile.xe6
cd ..

# Adding all packages
make yes-all
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package asphere
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package body
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package class2
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package colloid
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package coreshell
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package dipole
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package fld
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package gpu
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package granular
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package kim
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package kokkos
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package kspace
  updating package CORESHELL
  updating package GPU
  updating package KOKKOS
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package manybody
  updating package GPU
  updating package KOKKOS
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package mc
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package meam
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package misc
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package molecule
  updating package GPU
  updating package KOKKOS
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package mpiio
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package opt
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package peri
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package poems
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package python
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package qeq
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package reax
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package replica
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package rigid
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package shock
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package snap
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package srd
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package voronoi
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package xtc
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-atc
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-awpmd
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-cg-cmm
  updating package GPU
  updating src/pair_lj_sdk_coul_long_gpu.cpp
  updating src/pair_lj_sdk_coul_long_gpu.h
  updating src/pair_lj_sdk_gpu.cpp
  updating src/pair_lj_sdk_gpu.h
  updating package KOKKOS
  updating src/pair_lj_sdk_kokkos.cpp
  updating src/pair_lj_sdk_kokkos.h
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-colvars
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-cuda
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-eff
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-fep
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-intel
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-lb
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-misc
  updating package GPU
  updating src/pair_lj_sf_dipole_sf_gpu.cpp
  updating src/pair_lj_sf_dipole_sf_gpu.h
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-molfile
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-omp
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-phonon
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-qmmm
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-quip
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-reaxc
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
Installing package user-sph
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src'
make no-gpu
Uninstalling package gpu
make no-kim
Uninstalling package kim
make no-voronoi
Uninstalling package voronoi
make no-user-atc
Uninstalling package user-atc
make no-user-awpmd
Uninstalling package user-awpmd
make no-user-cuda
Uninstalling package user-cuda
make no-user-molfile
Uninstalling package user-molfile
make no-user-qmmm
Uninstalling package user-qmmm
make no-user-quip
Uninstalling package user-quip
make no-python

Uninstalling package python
make package-status
Installed YES: package ASPHERE
Installed YES: package BODY
Installed YES: package CLASS2
Installed YES: package COLLOID
Installed YES: package CORESHELL
Installed YES: package DIPOLE
Installed YES: package FLD
Installed  NO: package GPU
Installed YES: package GRANULAR
Installed  NO: package KIM
Installed YES: package KOKKOS
Installed YES: package KSPACE
Installed YES: package MANYBODY
Installed YES: package MC
Installed YES: package MEAM
Installed YES: package MISC
Installed YES: package MOLECULE
Installed YES: package MPIIO
Installed YES: package OPT
Installed YES: package PERI
Installed YES: package POEMS
Installed  NO: package PYTHON
Installed YES: package QEQ
Installed YES: package REAX
Installed YES: package REPLICA
Installed YES: package RIGID
Installed YES: package SHOCK
Installed YES: package SNAP
Installed YES: package SRD
Installed  NO: package VORONOI
Installed YES: package XTC

Installed  NO: package USER-ATC
Installed  NO: package USER-AWPMD
Installed YES: package USER-CG-CMM
Installed YES: package USER-COLVARS
Installed  NO: package USER-CUDA
Installed YES: package USER-EFF
Installed YES: package USER-FEP
Installed YES: package USER-INTEL
Installed YES: package USER-LB
Installed YES: package USER-MISC
Installed  NO: package USER-MOLFILE
Installed YES: package USER-OMP
Installed YES: package USER-PHONON
Installed  NO: package USER-QMMM
Installed  NO: package USER-QUIP
Installed YES: package USER-REAXC
Installed YES: package USER-SPH
cd ..

cd lib/meam
make -f Makefile.gfortran

gfortran -O -fPIC -fno-second-underscore -c meam_data.F
gfortran -O -fPIC -fno-second-underscore -c meam_setup_done.F
gfortran -O -fPIC -fno-second-underscore -c meam_setup_global.F
gfortran -O -fPIC -fno-second-underscore -c meam_setup_param.F
gfortran -O -fPIC -fno-second-underscore -c meam_dens_init.F
gfortran -O -fPIC -fno-second-underscore -c meam_dens_final.F
gfortran -O -fPIC -fno-second-underscore -c meam_force.F
gfortran -O -fPIC -fno-second-underscore -c meam_cleanup.F
ar rv libmeam.a meam_data.o meam_setup_done.o meam_setup_global.o meam_setup_param.o meam_dens_init.o meam_dens_final.o meam_force.o meam_cleanup.o
ar: creating libmeam.a
a - meam_data.o
a - meam_setup_done.o
a - meam_setup_global.o
a - meam_setup_param.o
a - meam_dens_init.o
a - meam_dens_final.o
a - meam_force.o
a - meam_cleanup.o
cd ../reax
make -f Makefile.gfortran

gfortran -O -fPIC -fno-second-underscore -c reax_connect.F
gfortran -O -fPIC -fno-second-underscore -c reax_inout.F
gfortran -O -fPIC -fno-second-underscore -c reax_lammps.F
gfortran -O -fPIC -fno-second-underscore -c reax_poten.F
gfortran -O -fPIC -fno-second-underscore -c reax_reac.F
gfortran -O -fPIC -fno-second-underscore -c reax_charges.F
ar rv libreax.a reax_connect.o reax_inout.o reax_lammps.o reax_poten.o reax_reac.o reax_charges.o
ar: creating libreax.a
a - reax_connect.o
a - reax_inout.o
a - reax_lammps.o
a - reax_poten.o
a - reax_reac.o
a - reax_charges.o
cd ../poems
make -f Makefile.g++

g++ -O -g -fPIC -Wall  -c workspace.cpp
g++ -O -g -fPIC -Wall  -c system.cpp
g++ -O -g -fPIC -Wall  -c poemsobject.cpp
poemsobject.cpp: In constructor 'POEMSObject::POEMSObject()':
poemsobject.cpp:24:23: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   ChangeName("unnamed");
                       ^
g++ -O -g -fPIC -Wall  -c body.cpp
g++ -O -g -fPIC -Wall  -c rigidbody.cpp
g++ -O -g -fPIC -Wall  -c particle.cpp
g++ -O -g -fPIC -Wall  -c inertialframe.cpp
g++ -O -g -fPIC -Wall  -c joint.cpp
g++ -O -g -fPIC -Wall  -c revolutejoint.cpp
g++ -O -g -fPIC -Wall  -c prismaticjoint.cpp
g++ -O -g -fPIC -Wall  -c sphericaljoint.cpp
g++ -O -g -fPIC -Wall  -c freebodyjoint.cpp
g++ -O -g -fPIC -Wall  -c body23joint.cpp
g++ -O -g -fPIC -Wall  -c mixedjoint.cpp
g++ -O -g -fPIC -Wall  -c point.cpp
g++ -O -g -fPIC -Wall  -c fixedpoint.cpp
g++ -O -g -fPIC -Wall  -c solver.cpp
g++ -O -g -fPIC -Wall  -c onsolver.cpp
g++ -O -g -fPIC -Wall  -c onfunctions.cpp
g++ -O -g -fPIC -Wall  -c onbody.cpp
g++ -O -g -fPIC -Wall  -c virtualmatrix.cpp
g++ -O -g -fPIC -Wall  -c matrix.cpp
g++ -O -g -fPIC -Wall  -c matrixfun.cpp
g++ -O -g -fPIC -Wall  -c mat3x3.cpp
g++ -O -g -fPIC -Wall  -c virtualcolmatrix.cpp
g++ -O -g -fPIC -Wall  -c colmatrix.cpp
g++ -O -g -fPIC -Wall  -c vect3.cpp
g++ -O -g -fPIC -Wall  -c virtualrowmatrix.cpp
g++ -O -g -fPIC -Wall  -c rowmatrix.cpp
g++ -O -g -fPIC -Wall  -c mat6x6.cpp
g++ -O -g -fPIC -Wall  -c vect6.cpp
g++ -O -g -fPIC -Wall  -c fastmatrixops.cpp
g++ -O -g -fPIC -Wall  -c colmatmap.cpp
g++ -O -g -fPIC -Wall  -c eulerparameters.cpp
g++ -O -g -fPIC -Wall  -c vect4.cpp
g++ -O -g -fPIC -Wall  -c norm.cpp
g++ -O -g -fPIC -Wall  -c mat4x4.cpp
g++ -O -g -fPIC -Wall  -c poemstreenode.cpp
In file included from poemstreenode.cpp:18:0:
poemstreenode.h: In constructor 'TreeNode::TreeNode(const int&amp;, TreeNode*, TreeNode*, int)':
poemstreenode.h:36:6: warning: 'TreeNode::data' will be initialized after [-Wreorder]
  int data;
      ^
poemstreenode.h:32:12: warning:   'TreeNode* TreeNode::left' [-Wreorder]
  TreeNode *left;
            ^
poemstreenode.cpp:22:1: warning:   when initialized here [-Wreorder]
 TreeNode::TreeNode (const int &amp; item, TreeNode *lptr,TreeNode *rptr,
 ^
ar rv libpoems.a workspace.o system.o poemsobject.o body.o rigidbody.o particle.o inertialframe.o joint.o revolutejoint.o prismaticjoint.o sphericaljoint.o freebodyjoint.o body23joint.o mixedjoint.o point.o fixedpoint.o solver.o onsolver.o onfunctions.o onbody.o virtualmatrix.o matrix.o matrixfun.o mat3x3.o virtualcolmatrix.o colmatrix.o vect3.o virtualrowmatrix.o rowmatrix.o mat6x6.o vect6.o fastmatrixops.o colmatmap.o eulerparameters.o vect4.o norm.o mat4x4.o poemstreenode.o
ar: creating libpoems.a
a - workspace.o
a - system.o
a - poemsobject.o
a - body.o
a - rigidbody.o
a - particle.o
a - inertialframe.o
a - joint.o
a - revolutejoint.o
a - prismaticjoint.o
a - sphericaljoint.o
a - freebodyjoint.o
a - body23joint.o
a - mixedjoint.o
a - point.o
a - fixedpoint.o
a - solver.o
a - onsolver.o
a - onfunctions.o
a - onbody.o
a - virtualmatrix.o
a - matrix.o
a - matrixfun.o
a - mat3x3.o
a - virtualcolmatrix.o
a - colmatrix.o
a - vect3.o
a - virtualrowmatrix.o
a - rowmatrix.o
a - mat6x6.o
a - vect6.o
a - fastmatrixops.o
a - colmatmap.o
a - eulerparameters.o
a - vect4.o
a - norm.o
a - mat4x4.o
a - poemstreenode.o
cd ../colvars
make -f Makefile.g++

g++ -O2 -g -fPIC -funroll-loops  -c colvaratoms.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias_abf.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias_alb.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias_histogram.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias_meta.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarbias_restraint.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp_angles.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp_coordnums.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp_distances.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp_protein.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarcomp_rotations.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvar.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvargrid.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarmodule.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarparse.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarscript.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvartypes.cpp
g++ -O2 -g -fPIC -funroll-loops  -c colvarvalue.cpp
ar rv libcolvars.a colvaratoms.o colvarbias_abf.o colvarbias_alb.o colvarbias.o colvarbias_histogram.o colvarbias_meta.o colvarbias_restraint.o colvarcomp_angles.o colvarcomp_coordnums.o colvarcomp.o colvarcomp_distances.o colvarcomp_protein.o colvarcomp_rotations.o colvar.o colvargrid.o colvarmodule.o colvarparse.o colvarscript.o colvartypes.o colvarvalue.o
ar: creating libcolvars.a
a - colvaratoms.o
a - colvarbias_abf.o
a - colvarbias_alb.o
a - colvarbias.o
a - colvarbias_histogram.o
a - colvarbias_meta.o
a - colvarbias_restraint.o
a - colvarcomp_angles.o
a - colvarcomp_coordnums.o
a - colvarcomp.o
a - colvarcomp_distances.o
a - colvarcomp_protein.o
a - colvarcomp_rotations.o
a - colvar.o
a - colvargrid.o
a - colvarmodule.o
a - colvarparse.o
a - colvarscript.o
a - colvartypes.o
a - colvarvalue.o
cd ../../src

# Building lammps

make xe6
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src/Obj_xe6'
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../xdr_compat.cpp &gt; xdr_compat.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../write_restart.cpp &gt; write_restart.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../write_dump.cpp &gt; write_dump.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../write_data.cpp &gt; write_data.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../verlet_split_intel.cpp &gt; verlet_split_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../verlet_split.cpp &gt; verlet_split.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../verlet_kokkos.cpp &gt; verlet_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../verlet_intel.cpp &gt; verlet_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../verlet.cpp &gt; verlet.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../velocity.cpp &gt; velocity.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../variable.cpp &gt; variable.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../update.cpp &gt; update.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../universe.cpp &gt; universe.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../timer.cpp &gt; timer.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../thr_omp.cpp &gt; thr_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../thr_data.cpp &gt; thr_data.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../thermo.cpp &gt; thermo.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../temper.cpp &gt; temper.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../tad.cpp &gt; tad.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../special.cpp &gt; special.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../sna.cpp &gt; sna.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../set.cpp &gt; set.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../run.cpp &gt; run.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../restart_mpiio.cpp &gt; restart_mpiio.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../respa_omp.cpp &gt; respa_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../respa.cpp &gt; respa.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../rerun.cpp &gt; rerun.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../replicate.cpp &gt; replicate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../remap_wrap.cpp &gt; remap_wrap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../remap.cpp &gt; remap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_union.cpp &gt; region_union.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_sphere.cpp &gt; region_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_prism.cpp &gt; region_prism.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_plane.cpp &gt; region_plane.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_intersect.cpp &gt; region_intersect.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_cylinder.cpp &gt; region_cylinder.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region.cpp &gt; region.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_cone.cpp &gt; region_cone.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../region_block.cpp &gt; region_block.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_vector.cpp &gt; reaxc_vector.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_valence_angles.cpp &gt; reaxc_valence_angles.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_traj.cpp &gt; reaxc_traj.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_torsion_angles.cpp &gt; reaxc_torsion_angles.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_tool_box.cpp &gt; reaxc_tool_box.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_system_props.cpp &gt; reaxc_system_props.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_reset_tools.cpp &gt; reaxc_reset_tools.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_nonbonded.cpp &gt; reaxc_nonbonded.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_multi_body.cpp &gt; reaxc_multi_body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_lookup.cpp &gt; reaxc_lookup.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_list.cpp &gt; reaxc_list.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_io_tools.cpp &gt; reaxc_io_tools.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_init_md.cpp &gt; reaxc_init_md.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_hydrogen_bonds.cpp &gt; reaxc_hydrogen_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_forces.cpp &gt; reaxc_forces.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_ffield.cpp &gt; reaxc_ffield.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_control.cpp &gt; reaxc_control.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_bonds.cpp &gt; reaxc_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_bond_orders.cpp &gt; reaxc_bond_orders.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reaxc_allocate.cpp &gt; reaxc_allocate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../read_restart.cpp &gt; read_restart.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reader_xyz.cpp &gt; reader_xyz.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reader_native.cpp &gt; reader_native.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../reader.cpp &gt; reader.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../read_dump.cpp &gt; read_dump.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../read_data.cpp &gt; read_data.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../rcb.cpp &gt; rcb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../random_park.cpp &gt; random_park.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../random_mars.cpp &gt; random_mars.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../procmap.cpp &gt; procmap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../prd.cpp &gt; prd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_tip4p_omp.cpp &gt; pppm_tip4p_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_tip4p.cpp &gt; pppm_tip4p.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_stagger.cpp &gt; pppm_stagger.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_omp.cpp &gt; pppm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_disp_tip4p_omp.cpp &gt; pppm_disp_tip4p_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_disp_tip4p.cpp &gt; pppm_disp_tip4p.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_disp_omp.cpp &gt; pppm_disp_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_disp.cpp &gt; pppm_disp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm.cpp &gt; pppm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_cg_omp.cpp &gt; pppm_cg_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pppm_cg.cpp &gt; pppm_cg.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_zbl_omp.cpp &gt; pair_zbl_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_zbl.cpp &gt; pair_zbl.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_yukawa_omp.cpp &gt; pair_yukawa_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_yukawa.cpp &gt; pair_yukawa.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_yukawa_colloid_omp.cpp &gt; pair_yukawa_colloid_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_yukawa_colloid.cpp &gt; pair_yukawa_colloid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tri_lj_omp.cpp &gt; pair_tri_lj_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tri_lj.cpp &gt; pair_tri_lj.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_long_soft_omp.cpp &gt; pair_tip4p_long_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_long_soft.cpp &gt; pair_tip4p_long_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_long_omp.cpp &gt; pair_tip4p_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_long.cpp &gt; pair_tip4p_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_cut_omp.cpp &gt; pair_tip4p_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tip4p_cut.cpp &gt; pair_tip4p_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_zbl_omp.cpp &gt; pair_tersoff_zbl_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_zbl_kokkos.cpp &gt; pair_tersoff_zbl_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_zbl.cpp &gt; pair_tersoff_zbl.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_table_omp.cpp &gt; pair_tersoff_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_table.cpp &gt; pair_tersoff_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_omp.cpp &gt; pair_tersoff_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_mod_omp.cpp &gt; pair_tersoff_mod_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_mod_kokkos.cpp &gt; pair_tersoff_mod_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_mod.cpp &gt; pair_tersoff_mod.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff_kokkos.cpp &gt; pair_tersoff_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_tersoff.cpp &gt; pair_tersoff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_table_omp.cpp &gt; pair_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_table_kokkos.cpp &gt; pair_table_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_table.cpp &gt; pair_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sw_omp.cpp &gt; pair_sw_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sw_kokkos.cpp &gt; pair_sw_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sw_intel.cpp &gt; pair_sw_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sw.cpp &gt; pair_sw.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_srp.cpp &gt; pair_srp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_taitwater_morris.cpp &gt; pair_sph_taitwater_morris.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_taitwater.cpp &gt; pair_sph_taitwater.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_rhosum.cpp &gt; pair_sph_rhosum.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_lj.cpp &gt; pair_sph_lj.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_idealgas.cpp &gt; pair_sph_idealgas.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_sph_heatconduction.cpp &gt; pair_sph_heatconduction.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_soft_omp.cpp &gt; pair_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_soft.cpp &gt; pair_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_snap.cpp &gt; pair_snap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_resquared_omp.cpp &gt; pair_resquared_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_resquared.cpp &gt; pair_resquared.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_rebo_omp.cpp &gt; pair_rebo_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_rebo.cpp &gt; pair_rebo.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_reax.cpp &gt; pair_reax.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_reax_c.cpp &gt; pair_reax_c.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_ves.cpp &gt; pair_peri_ves.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_pmb_omp.cpp &gt; pair_peri_pmb_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_pmb.cpp &gt; pair_peri_pmb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_lps_omp.cpp &gt; pair_peri_lps_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_lps.cpp &gt; pair_peri_lps.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_peri_eps.cpp &gt; pair_peri_eps.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut_omp.cpp &gt; pair_nm_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut.cpp &gt; pair_nm_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut_coul_long_omp.cpp &gt; pair_nm_cut_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut_coul_long.cpp &gt; pair_nm_cut_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut_coul_cut_omp.cpp &gt; pair_nm_cut_coul_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nm_cut_coul_cut.cpp &gt; pair_nm_cut_coul_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nb3b_harmonic_omp.cpp &gt; pair_nb3b_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_nb3b_harmonic.cpp &gt; pair_nb3b_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_morse_opt.cpp &gt; pair_morse_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_morse_omp.cpp &gt; pair_morse_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_morse.cpp &gt; pair_morse.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_mie_cut.cpp &gt; pair_mie_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_meam_sw_spline.cpp &gt; pair_meam_sw_spline.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_meam_spline_omp.cpp &gt; pair_meam_spline_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_meam_spline.cpp &gt; pair_meam_spline.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_meam.cpp &gt; pair_meam.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricateU_poly.cpp &gt; pair_lubricateU_poly.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricateU.cpp &gt; pair_lubricateU.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricate_poly_omp.cpp &gt; pair_lubricate_poly_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricate_poly.cpp &gt; pair_lubricate_poly.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricate_omp.cpp &gt; pair_lubricate_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lubricate.cpp &gt; pair_lubricate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_smooth_omp.cpp &gt; pair_lj_smooth_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_smooth_linear_omp.cpp &gt; pair_lj_smooth_linear_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_smooth_linear.cpp &gt; pair_lj_smooth_linear.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_smooth.cpp &gt; pair_lj_smooth.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sf_omp.cpp &gt; pair_lj_sf_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sf_dipole_sf_omp.cpp &gt; pair_lj_sf_dipole_sf_omp.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_omp.cpp &gt; pair_lj_sdk_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_kokkos.cpp &gt; pair_lj_sdk_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk.cpp &gt; pair_lj_sdk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_coul_msm_omp.cpp &gt; pair_lj_sdk_coul_msm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_coul_msm.cpp &gt; pair_lj_sdk_coul_msm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_coul_long_omp.cpp &gt; pair_lj_sdk_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_sdk_coul_long.cpp &gt; pair_lj_sdk_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_tip4p_long_omp.cpp &gt; pair_lj_long_tip4p_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_tip4p_long.cpp &gt; pair_lj_long_tip4p_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_dipole_long.cpp &gt; pair_lj_long_dipole_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_coul_long_opt.cpp &gt; pair_lj_long_coul_long_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_coul_long_omp.cpp &gt; pair_lj_long_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_long_coul_long.cpp &gt; pair_lj_long_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs_omp.cpp &gt; pair_lj_gromacs_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs_kokkos.cpp &gt; pair_lj_gromacs_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs.cpp &gt; pair_lj_gromacs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs_coul_gromacs_omp.cpp &gt; pair_lj_gromacs_coul_gromacs_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs_coul_gromacs_kokkos.cpp &gt; pair_lj_gromacs_coul_gromacs_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_gromacs_coul_gromacs.cpp &gt; pair_lj_gromacs_coul_gromacs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_expand_omp.cpp &gt; pair_lj_expand_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_expand_kokkos.cpp &gt; pair_lj_expand_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_expand.cpp &gt; pair_lj_expand.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_tip4p_long_soft_omp.cpp &gt; pair_lj_cut_tip4p_long_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_tip4p_long_soft.cpp &gt; pair_lj_cut_tip4p_long_soft.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_tip4p_long_omp.cpp &gt; pair_lj_cut_tip4p_long_omp.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_tip4p_cut.cpp &gt; pair_lj_cut_tip4p_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_soft_omp.cpp &gt; pair_lj_cut_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_soft.cpp &gt; pair_lj_cut_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_opt.cpp &gt; pair_lj_cut_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_omp.cpp &gt; pair_lj_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_kokkos.cpp &gt; pair_lj_cut_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_intel.cpp &gt; pair_lj_cut_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_dipole_long.cpp &gt; pair_lj_cut_dipole_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_dipole_cut_omp.cpp &gt; pair_lj_cut_dipole_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_dipole_cut.cpp &gt; pair_lj_cut_dipole_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut.cpp &gt; pair_lj_cut.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_long_soft.cpp &gt; pair_lj_cut_coul_long_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_long_opt.cpp &gt; pair_lj_cut_coul_long_opt.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_long_kokkos.cpp &gt; pair_lj_cut_coul_long_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_long_intel.cpp &gt; pair_lj_cut_coul_long_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_long.cpp &gt; pair_lj_cut_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_dsf_omp.cpp &gt; pair_lj_cut_coul_dsf_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_dsf_kokkos.cpp &gt; pair_lj_cut_coul_dsf_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_cut_coul_dsf.cpp &gt; pair_lj_cut_coul_dsf.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_class2.cpp &gt; pair_lj_class2.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_class2_coul_long_kokkos.cpp &gt; pair_lj_class2_coul_long_kokkos.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_long_kokkos.cpp &gt; pair_lj_charmm_coul_long_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_long_intel.cpp &gt; pair_lj_charmm_coul_long_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_long.cpp &gt; pair_lj_charmm_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm_omp.cpp &gt; pair_lj_charmm_coul_charmm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm_kokkos.cpp &gt; pair_lj_charmm_coul_charmm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm_implicit_omp.cpp &gt; pair_lj_charmm_coul_charmm_implicit_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm_implicit_kokkos.cpp &gt; pair_lj_charmm_coul_charmm_implicit_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm_implicit.cpp &gt; pair_lj_charmm_coul_charmm_implicit.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj_charmm_coul_charmm.cpp &gt; pair_lj_charmm_coul_charmm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj96_cut_omp.cpp &gt; pair_lj96_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lj96_cut.cpp &gt; pair_lj96_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_list.cpp &gt; pair_list.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_line_lj_omp.cpp &gt; pair_line_lj_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_line_lj.cpp &gt; pair_line_lj.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_lcbop.cpp &gt; pair_lcbop.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hybrid_overlay.cpp &gt; pair_hybrid_overlay.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hybrid.cpp &gt; pair_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hbond_dreiding_morse_omp.cpp &gt; pair_hbond_dreiding_morse_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hbond_dreiding_morse.cpp &gt; pair_hbond_dreiding_morse.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hbond_dreiding_lj_omp.cpp &gt; pair_hbond_dreiding_lj_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_hbond_dreiding_lj.cpp &gt; pair_hbond_dreiding_lj.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hooke_omp.cpp &gt; pair_gran_hooke_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hooke_history_omp.cpp &gt; pair_gran_hooke_history_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hooke_history.cpp &gt; pair_gran_hooke_history.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hooke.cpp &gt; pair_gran_hooke.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hertz_history_omp.cpp &gt; pair_gran_hertz_history_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gran_hertz_history.cpp &gt; pair_gran_hertz_history.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gayberne_omp.cpp &gt; pair_gayberne_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gayberne_intel.cpp &gt; pair_gayberne_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gayberne.cpp &gt; pair_gayberne.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gauss_omp.cpp &gt; pair_gauss_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gauss_cut_omp.cpp &gt; pair_gauss_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gauss_cut.cpp &gt; pair_gauss_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_gauss.cpp &gt; pair_gauss.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eim_omp.cpp &gt; pair_eim_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eim.cpp &gt; pair_eim.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eff_cut.cpp &gt; pair_eff_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_edip_omp.cpp &gt; pair_edip_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_edip.cpp &gt; pair_edip.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_opt.cpp &gt; pair_eam_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_omp.cpp &gt; pair_eam_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_kokkos.cpp &gt; pair_eam_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_fs_opt.cpp &gt; pair_eam_fs_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_fs_omp.cpp &gt; pair_eam_fs_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_fs_kokkos.cpp &gt; pair_eam_fs_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_fs.cpp &gt; pair_eam_fs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam.cpp &gt; pair_eam.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_alloy_opt.cpp &gt; pair_eam_alloy_opt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_alloy_omp.cpp &gt; pair_eam_alloy_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_alloy_kokkos.cpp &gt; pair_eam_alloy_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_eam_alloy.cpp &gt; pair_eam_alloy.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_dsmc.cpp &gt; pair_dsmc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_dpd_tstat_omp.cpp &gt; pair_dpd_tstat_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_dpd_tstat.cpp &gt; pair_dpd_tstat.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_dpd_omp.cpp &gt; pair_dpd_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_dpd.cpp &gt; pair_dpd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair.cpp &gt; pair.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_wolf_omp.cpp &gt; pair_coul_wolf_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_wolf_kokkos.cpp &gt; pair_coul_wolf_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_wolf.cpp &gt; pair_coul_wolf.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_streitz.cpp &gt; pair_coul_streitz.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_msm_omp.cpp &gt; pair_coul_msm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_msm.cpp &gt; pair_coul_msm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_long_soft_omp.cpp &gt; pair_coul_long_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_long_soft.cpp &gt; pair_coul_long_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_long_omp.cpp &gt; pair_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_long_kokkos.cpp &gt; pair_coul_long_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_long.cpp &gt; pair_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_dsf_omp.cpp &gt; pair_coul_dsf_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_dsf_kokkos.cpp &gt; pair_coul_dsf_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_dsf.cpp &gt; pair_coul_dsf.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_diel_omp.cpp &gt; pair_coul_diel_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_diel.cpp &gt; pair_coul_diel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_debye_omp.cpp &gt; pair_coul_debye_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_debye_kokkos.cpp &gt; pair_coul_debye_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_debye.cpp &gt; pair_coul_debye.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_cut_soft_omp.cpp &gt; pair_coul_cut_soft_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_cut_soft.cpp &gt; pair_coul_cut_soft.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_cut_omp.cpp &gt; pair_coul_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_cut_kokkos.cpp &gt; pair_coul_cut_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_coul_cut.cpp &gt; pair_coul_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_comb_omp.cpp &gt; pair_comb_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_comb.cpp &gt; pair_comb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_comb3.cpp &gt; pair_comb3.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_colloid_omp.cpp &gt; pair_colloid_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_colloid.cpp &gt; pair_colloid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_cdeam_omp.cpp &gt; pair_cdeam_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_cdeam.cpp &gt; pair_cdeam.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_omp.cpp &gt; pair_buck_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_long_coul_long_omp.cpp &gt; pair_buck_long_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_long_coul_long.cpp &gt; pair_buck_long_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_kokkos.cpp &gt; pair_buck_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck.cpp &gt; pair_buck.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_msm_omp.cpp &gt; pair_buck_coul_msm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_msm.cpp &gt; pair_buck_coul_msm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_long_omp.cpp &gt; pair_buck_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_long_kokkos.cpp &gt; pair_buck_coul_long_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_long_cs.cpp &gt; pair_buck_coul_long_cs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_long.cpp &gt; pair_buck_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_cut_omp.cpp &gt; pair_buck_coul_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_cut_kokkos.cpp &gt; pair_buck_coul_cut_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_buck_coul_cut.cpp &gt; pair_buck_coul_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_brownian_poly_omp.cpp &gt; pair_brownian_poly_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_brownian_poly.cpp &gt; pair_brownian_poly.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_brownian_omp.cpp &gt; pair_brownian_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_brownian.cpp &gt; pair_brownian.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_omp.cpp &gt; pair_born_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born.cpp &gt; pair_born.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_wolf_omp.cpp &gt; pair_born_coul_wolf_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_wolf.cpp &gt; pair_born_coul_wolf.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_msm_omp.cpp &gt; pair_born_coul_msm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_msm.cpp &gt; pair_born_coul_msm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_long_omp.cpp &gt; pair_born_coul_long_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_long_cs.cpp &gt; pair_born_coul_long_cs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_born_coul_long.cpp &gt; pair_born_coul_long.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_bop.cpp &gt; pair_bop.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_body.cpp &gt; pair_body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_beck_omp.cpp &gt; pair_beck_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_beck.cpp &gt; pair_beck.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_airebo_omp.cpp &gt; pair_airebo_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_airebo.cpp &gt; pair_airebo.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_adp_omp.cpp &gt; pair_adp_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../pair_adp.cpp &gt; pair_adp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../output.cpp &gt; output.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_stencil.cpp &gt; neigh_stencil.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_respa_omp.cpp &gt; neigh_respa_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_respa.cpp &gt; neigh_respa.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_request.cpp &gt; neigh_request.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_list_kokkos.cpp &gt; neigh_list_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_list.cpp &gt; neigh_list.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_nsq_omp.cpp &gt; neigh_half_nsq_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_nsq.cpp &gt; neigh_half_nsq.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_multi_omp.cpp &gt; neigh_half_multi_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_multi.cpp &gt; neigh_half_multi.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_bin_omp.cpp &gt; neigh_half_bin_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_bin_intel.cpp &gt; neigh_half_bin_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_half_bin.cpp &gt; neigh_half_bin.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_gran_omp.cpp &gt; neigh_gran_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_gran.cpp &gt; neigh_gran.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_full_omp.cpp &gt; neigh_full_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_full.cpp &gt; neigh_full.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_derive_omp.cpp &gt; neigh_derive_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_derive.cpp &gt; neigh_derive.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neighbor_kokkos.cpp &gt; neighbor_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neighbor.cpp &gt; neighbor.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_bond_kokkos.cpp &gt; neigh_bond_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neigh_bond.cpp &gt; neigh_bond.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../neb.cpp &gt; neb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../msm_omp.cpp &gt; msm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../msm.cpp &gt; msm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../msm_cg_omp.cpp &gt; msm_cg_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../msm_cg.cpp &gt; msm_cg.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../molecule.cpp &gt; molecule.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../modify_kokkos.cpp &gt; modify_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../modify.cpp &gt; modify.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_sd.cpp &gt; min_sd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_quickmin.cpp &gt; min_quickmin.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_linesearch.cpp &gt; min_linesearch.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../minimize.cpp &gt; minimize.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_hftn.cpp &gt; min_hftn.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_fire.cpp &gt; min_fire.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min.cpp &gt; min.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../min_cg.cpp &gt; min_cg.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../memory.cpp &gt; memory.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../math_extra.cpp &gt; math_extra.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../main.cpp &gt; main.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../library.cpp &gt; library.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../lattice.cpp &gt; lattice.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../lammps.cpp &gt; lammps.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../kspace.cpp &gt; kspace.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../kokkos.cpp &gt; kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../irregular.cpp &gt; irregular.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../intel_buffers.cpp &gt; intel_buffers.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../integrate.cpp &gt; integrate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../input.cpp &gt; input.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_umbrella_omp.cpp &gt; improper_umbrella_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_umbrella.cpp &gt; improper_umbrella.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_ring_omp.cpp &gt; improper_ring_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_ring.cpp &gt; improper_ring.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_hybrid.cpp &gt; improper_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_harmonic_omp.cpp &gt; improper_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_harmonic_kokkos.cpp &gt; improper_harmonic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_harmonic.cpp &gt; improper_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_fourier_omp.cpp &gt; improper_fourier_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_fourier.cpp &gt; improper_fourier.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_cvff_omp.cpp &gt; improper_cvff_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_cvff.cpp &gt; improper_cvff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper.cpp &gt; improper.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_cossq_omp.cpp &gt; improper_cossq_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_cossq.cpp &gt; improper_cossq.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_class2_omp.cpp &gt; improper_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../improper_class2.cpp &gt; improper_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../image.cpp &gt; image.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../group_ndx.cpp &gt; group_ndx.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../group.cpp &gt; group.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../gridcomm.cpp &gt; gridcomm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../force.cpp &gt; force.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_srd.cpp &gt; fix_wall_srd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_region.cpp &gt; fix_wall_region.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_reflect.cpp &gt; fix_wall_reflect.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_piston.cpp &gt; fix_wall_piston.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_lj93.cpp &gt; fix_wall_lj93.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_lj126.cpp &gt; fix_wall_lj126.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_lj1043.cpp &gt; fix_wall_lj1043.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_harmonic.cpp &gt; fix_wall_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_gran_omp.cpp &gt; fix_wall_gran_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_gran.cpp &gt; fix_wall_gran.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall.cpp &gt; fix_wall.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_wall_colloid.cpp &gt; fix_wall_colloid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_viscous.cpp &gt; fix_viscous.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_viscosity.cpp &gt; fix_viscosity.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_vector.cpp &gt; fix_vector.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_tune_kspace.cpp &gt; fix_tune_kspace.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ttm_mod.cpp &gt; fix_ttm_mod.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ttm.cpp &gt; fix_ttm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_tmd.cpp &gt; fix_tmd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ti_spring.cpp &gt; fix_ti_spring.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ti_rs.cpp &gt; fix_ti_rs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_thermal_conductivity.cpp &gt; fix_thermal_conductivity.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_tfmc.cpp &gt; fix_tfmc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_temp_rescale_eff.cpp &gt; fix_temp_rescale_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_temp_rescale.cpp &gt; fix_temp_rescale.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_temp_csvr.cpp &gt; fix_temp_csvr.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_temp_csld.cpp &gt; fix_temp_csld.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_temp_berendsen.cpp &gt; fix_temp_berendsen.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_store_state.cpp &gt; fix_store_state.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_store_force.cpp &gt; fix_store_force.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_store.cpp &gt; fix_store.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_srp.cpp &gt; fix_srp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_srd.cpp &gt; fix_srd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_spring_self.cpp &gt; fix_spring_self.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_spring_rg.cpp &gt; fix_spring_rg.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_spring.cpp &gt; fix_spring.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_smd.cpp &gt; fix_smd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_shear_history_omp.cpp &gt; fix_shear_history_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_shear_history.cpp &gt; fix_shear_history.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_shake.cpp &gt; fix_shake.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_setforce.cpp &gt; fix_setforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_small_omp.cpp &gt; fix_rigid_small_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_small.cpp &gt; fix_rigid_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_omp.cpp &gt; fix_rigid_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nvt_small.cpp &gt; fix_rigid_nvt_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nvt_omp.cpp &gt; fix_rigid_nvt_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nvt.cpp &gt; fix_rigid_nvt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nve_small.cpp &gt; fix_rigid_nve_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nve_omp.cpp &gt; fix_rigid_nve_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nve.cpp &gt; fix_rigid_nve.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_npt_small.cpp &gt; fix_rigid_npt_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_npt_omp.cpp &gt; fix_rigid_npt_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_npt.cpp &gt; fix_rigid_npt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nph_small.cpp &gt; fix_rigid_nph_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nph_omp.cpp &gt; fix_rigid_nph_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nph.cpp &gt; fix_rigid_nph.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nh_small.cpp &gt; fix_rigid_nh_small.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nh_omp.cpp &gt; fix_rigid_nh_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid_nh.cpp &gt; fix_rigid_nh.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rigid.cpp &gt; fix_rigid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_restrain.cpp &gt; fix_restrain.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_respa.cpp &gt; fix_respa.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_recenter.cpp &gt; fix_recenter.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_reaxc_species.cpp &gt; fix_reaxc_species.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_reax_c.cpp &gt; fix_reax_c.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_reaxc_bonds.cpp &gt; fix_reaxc_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_reax_bonds.cpp &gt; fix_reax_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_read_restart.cpp &gt; fix_read_restart.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_rattle.cpp &gt; fix_rattle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_slater.cpp &gt; fix_qeq_slater.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_shielded.cpp &gt; fix_qeq_shielded.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_reax.cpp &gt; fix_qeq_reax.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_point.cpp &gt; fix_qeq_point.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_dynamic.cpp &gt; fix_qeq_dynamic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq.cpp &gt; fix_qeq.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_comb_omp.cpp &gt; fix_qeq_comb_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_qeq_comb.cpp &gt; fix_qeq_comb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_property_atom.cpp &gt; fix_property_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_print.cpp &gt; fix_print.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_press_berendsen.cpp &gt; fix_press_berendsen.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_pour.cpp &gt; fix_pour.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_poems.cpp &gt; fix_poems.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_planeforce.cpp &gt; fix_planeforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_pimd.cpp &gt; fix_pimd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_phonon.cpp &gt; fix_phonon.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_peri_neigh_omp.cpp &gt; fix_peri_neigh_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_peri_neigh.cpp &gt; fix_peri_neigh.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_orient_fcc.cpp &gt; fix_orient_fcc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_oneway.cpp &gt; fix_oneway.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_omp.cpp &gt; fix_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_sphere_omp.cpp &gt; fix_nvt_sphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_sphere.cpp &gt; fix_nvt_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_sllod_omp.cpp &gt; fix_nvt_sllod_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_sllod_eff.cpp &gt; fix_nvt_sllod_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_sllod.cpp &gt; fix_nvt_sllod.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_omp.cpp &gt; fix_nvt_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_eff.cpp &gt; fix_nvt_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt.cpp &gt; fix_nvt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_asphere_omp.cpp &gt; fix_nvt_asphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nvt_asphere.cpp &gt; fix_nvt_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_tri.cpp &gt; fix_nve_tri.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_sphere_omp.cpp &gt; fix_nve_sphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_sphere.cpp &gt; fix_nve_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_omp.cpp &gt; fix_nve_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_noforce.cpp &gt; fix_nve_noforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_line.cpp &gt; fix_nve_line.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_limit.cpp &gt; fix_nve_limit.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_kokkos.cpp &gt; fix_nve_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_eff.cpp &gt; fix_nve_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve.cpp &gt; fix_nve.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_body.cpp &gt; fix_nve_body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_asphere_noforce.cpp &gt; fix_nve_asphere_noforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nve_asphere.cpp &gt; fix_nve_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_sphere_omp.cpp &gt; fix_npt_sphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_sphere.cpp &gt; fix_npt_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_omp.cpp &gt; fix_npt_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_eff.cpp &gt; fix_npt_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt.cpp &gt; fix_npt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_asphere_omp.cpp &gt; fix_npt_asphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_npt_asphere.cpp &gt; fix_npt_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nphug_omp.cpp &gt; fix_nphug_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nphug.cpp &gt; fix_nphug.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_sphere_omp.cpp &gt; fix_nph_sphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_sphere.cpp &gt; fix_nph_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_omp.cpp &gt; fix_nph_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_eff.cpp &gt; fix_nph_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph.cpp &gt; fix_nph.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_asphere_omp.cpp &gt; fix_nph_asphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nph_asphere.cpp &gt; fix_nph_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_sphere_omp.cpp &gt; fix_nh_sphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_sphere.cpp &gt; fix_nh_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_omp.cpp &gt; fix_nh_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_eff.cpp &gt; fix_nh_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh.cpp &gt; fix_nh.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_asphere_omp.cpp &gt; fix_nh_asphere_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_nh_asphere.cpp &gt; fix_nh_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_neb.cpp &gt; fix_neb.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_msst.cpp &gt; fix_msst.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_move.cpp &gt; fix_move.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_momentum.cpp &gt; fix_momentum.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_minimize.cpp &gt; fix_minimize.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_meso_stationary.cpp &gt; fix_meso_stationary.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_meso.cpp &gt; fix_meso.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lineforce.cpp &gt; fix_lineforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lb_viscous.cpp &gt; fix_lb_viscous.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lb_rigid_pc_sphere.cpp &gt; fix_lb_rigid_pc_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lb_pc.cpp &gt; fix_lb_pc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lb_momentum.cpp &gt; fix_lb_momentum.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_lb_fluid.cpp &gt; fix_lb_fluid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_langevin_kokkos.cpp &gt; fix_langevin_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_langevin_eff.cpp &gt; fix_langevin_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_langevin.cpp &gt; fix_langevin.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ipi.cpp &gt; fix_ipi.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_intel.cpp &gt; fix_intel.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_indent.cpp &gt; fix_indent.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_imd.cpp &gt; fix_imd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_heat.cpp &gt; fix_heat.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_group.cpp &gt; fix_group.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_gravity_omp.cpp &gt; fix_gravity_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_gravity.cpp &gt; fix_gravity.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_gle.cpp &gt; fix_gle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_gld.cpp &gt; fix_gld.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_gcmc.cpp &gt; fix_gcmc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_freeze.cpp &gt; fix_freeze.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_external.cpp &gt; fix_external.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_event_tad.cpp &gt; fix_event_tad.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_event_prd.cpp &gt; fix_event_prd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_event.cpp &gt; fix_event.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_evaporate.cpp &gt; fix_evaporate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_enforce2d.cpp &gt; fix_enforce2d.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_efield.cpp &gt; fix_efield.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_dt_reset.cpp &gt; fix_dt_reset.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_drag.cpp &gt; fix_drag.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_deposit.cpp &gt; fix_deposit.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_deform.cpp &gt; fix_deform.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix.cpp &gt; fix.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_colvars.cpp &gt; fix_colvars.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_box_relax.cpp &gt; fix_box_relax.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_bond_swap.cpp &gt; fix_bond_swap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_bond_create.cpp &gt; fix_bond_create.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_bond_break.cpp &gt; fix_bond_break.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_balance.cpp &gt; fix_balance.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_time.cpp &gt; fix_ave_time.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_spatial_sphere.cpp &gt; fix_ave_spatial_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_spatial.cpp &gt; fix_ave_spatial.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_histo.cpp &gt; fix_ave_histo.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_aveforce.cpp &gt; fix_aveforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_correlate.cpp &gt; fix_ave_correlate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_chunk.cpp &gt; fix_ave_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_ave_atom.cpp &gt; fix_ave_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_atom_swap.cpp &gt; fix_atom_swap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_append_atoms.cpp &gt; fix_append_atoms.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_addtorque.cpp &gt; fix_addtorque.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_addforce.cpp &gt; fix_addforce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_adapt_fep.cpp &gt; fix_adapt_fep.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fix_adapt.cpp &gt; fix_adapt.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../finish.cpp &gt; finish.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fft3d_wrap.cpp &gt; fft3d_wrap.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../fft3d.cpp &gt; fft3d.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../ewald_omp.cpp &gt; ewald_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../ewald_disp.cpp &gt; ewald_disp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../ewald.cpp &gt; ewald.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../error.cpp &gt; error.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_xyz_mpiio.cpp &gt; dump_xyz_mpiio.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_xyz.cpp &gt; dump_xyz.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_xtc.cpp &gt; dump_xtc.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_movie.cpp &gt; dump_movie.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_local.cpp &gt; dump_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_image.cpp &gt; dump_image.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_dcd.cpp &gt; dump_dcd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_custom_mpiio.cpp &gt; dump_custom_mpiio.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_custom.cpp &gt; dump_custom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump.cpp &gt; dump.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_cfg_mpiio.cpp &gt; dump_cfg_mpiio.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_cfg.cpp &gt; dump_cfg.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_atom_mpiio.cpp &gt; dump_atom_mpiio.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dump_atom.cpp &gt; dump_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../domain_omp.cpp &gt; domain_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../domain_kokkos.cpp &gt; domain_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../domain.cpp &gt; domain.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../displace_atoms.cpp &gt; displace_atoms.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_table_omp.cpp &gt; dihedral_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_table.cpp &gt; dihedral_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_quadratic_omp.cpp &gt; dihedral_quadratic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_quadratic.cpp &gt; dihedral_quadratic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_opls_omp.cpp &gt; dihedral_opls_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_opls_kokkos.cpp &gt; dihedral_opls_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_opls.cpp &gt; dihedral_opls.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_nharmonic_omp.cpp &gt; dihedral_nharmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_nharmonic.cpp &gt; dihedral_nharmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_multi_harmonic_omp.cpp &gt; dihedral_multi_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_multi_harmonic.cpp &gt; dihedral_multi_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_hybrid.cpp &gt; dihedral_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_helix_omp.cpp &gt; dihedral_helix_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_helix.cpp &gt; dihedral_helix.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_harmonic_omp.cpp &gt; dihedral_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_harmonic.cpp &gt; dihedral_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_fourier_omp.cpp &gt; dihedral_fourier_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_fourier.cpp &gt; dihedral_fourier.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral.cpp &gt; dihedral.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_cosine_shift_exp_omp.cpp &gt; dihedral_cosine_shift_exp_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_cosine_shift_exp.cpp &gt; dihedral_cosine_shift_exp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_class2_omp.cpp &gt; dihedral_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_class2.cpp &gt; dihedral_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_charmm_omp.cpp &gt; dihedral_charmm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_charmm_kokkos.cpp &gt; dihedral_charmm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../dihedral_charmm.cpp &gt; dihedral_charmm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../delete_bonds.cpp &gt; delete_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../delete_atoms.cpp &gt; delete_atoms.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../create_box.cpp &gt; create_box.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../create_bonds.cpp &gt; create_bonds.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../create_atoms.cpp &gt; create_atoms.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_vcm_chunk.cpp &gt; compute_vcm_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_vacf.cpp &gt; compute_vacf.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_torque_chunk.cpp &gt; compute_torque_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ti.cpp &gt; compute_ti.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_sphere.cpp &gt; compute_temp_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_rotate.cpp &gt; compute_temp_rotate.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_region_eff.cpp &gt; compute_temp_region_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_region.cpp &gt; compute_temp_region.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_ramp.cpp &gt; compute_temp_ramp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_profile.cpp &gt; compute_temp_profile.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_partial.cpp &gt; compute_temp_partial.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_eff.cpp &gt; compute_temp_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_deform_eff.cpp &gt; compute_temp_deform_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_deform.cpp &gt; compute_temp_deform.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_cs.cpp &gt; compute_temp_cs.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp.cpp &gt; compute_temp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_com.cpp &gt; compute_temp_com.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_chunk.cpp &gt; compute_temp_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_temp_asphere.cpp &gt; compute_temp_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_stress_atom.cpp &gt; compute_stress_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_spec_atom.cpp &gt; compute_spec_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_snav_atom.cpp &gt; compute_snav_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_snad_atom.cpp &gt; compute_snad_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_sna_atom.cpp &gt; compute_sna_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_slice.cpp &gt; compute_slice.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_reduce_region.cpp &gt; compute_reduce_region.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_reduce.cpp &gt; compute_reduce.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_rdf.cpp &gt; compute_rdf.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_property_local.cpp &gt; compute_property_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_property_chunk.cpp &gt; compute_property_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_property_atom.cpp &gt; compute_property_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pressure.cpp &gt; compute_pressure.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_plasticity_atom.cpp &gt; compute_plasticity_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pe.cpp &gt; compute_pe.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pe_atom.cpp &gt; compute_pe_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pair_local.cpp &gt; compute_pair_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pair.cpp &gt; compute_pair.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_omega_chunk.cpp &gt; compute_omega_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd_nongauss.cpp &gt; compute_msd_nongauss.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd.cpp &gt; compute_msd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd_chunk.cpp &gt; compute_msd_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_t_atom.cpp &gt; compute_meso_t_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_rho_atom.cpp &gt; compute_meso_rho_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_e_atom.cpp &gt; compute_meso_e_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_rigid.cpp &gt; compute_ke_rigid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_eff.cpp &gt; compute_ke_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke.cpp &gt; compute_ke.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_atom_eff.cpp &gt; compute_ke_atom_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_atom.cpp &gt; compute_ke_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_inertia_chunk.cpp &gt; compute_inertia_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_improper_local.cpp &gt; compute_improper_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_heat_flux.cpp &gt; compute_heat_flux.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_gyration.cpp &gt; compute_gyration.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_gyration_chunk.cpp &gt; compute_gyration_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_group_group.cpp &gt; compute_group_group.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_fep.cpp &gt; compute_fep.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_event_displace.cpp &gt; compute_event_displace.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_sphere.cpp &gt; compute_erotate_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_sphere_atom.cpp &gt; compute_erotate_sphere_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_rigid.cpp &gt; compute_erotate_rigid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_asphere.cpp &gt; compute_erotate_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_displace_atom.cpp &gt; compute_displace_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_dilatation_atom.cpp &gt; compute_dilatation_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_dihedral_local.cpp &gt; compute_dihedral_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_damage_atom.cpp &gt; compute_damage_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute.cpp &gt; compute.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_coord_atom.cpp &gt; compute_coord_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_contact_atom.cpp &gt; compute_contact_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_com.cpp &gt; compute_com.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_com_chunk.cpp &gt; compute_com_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_cna_atom.cpp &gt; compute_cna_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_cluster_atom.cpp &gt; compute_cluster_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_chunk_atom.cpp &gt; compute_chunk_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_centro_atom.cpp &gt; compute_centro_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_bond_local.cpp &gt; compute_bond_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_body_local.cpp &gt; compute_body_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_basal_atom.cpp &gt; compute_basal_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_angmom_chunk.cpp &gt; compute_angmom_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_angle_local.cpp &gt; compute_angle_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ackland_atom.cpp &gt; compute_ackland_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_tiled.cpp &gt; comm_tiled.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_kokkos.cpp &gt; comm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm.cpp &gt; comm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_brick.cpp &gt; comm_brick.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../colvarproxy_lammps.cpp &gt; colvarproxy_lammps.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../citeme.cpp &gt; citeme.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../change_box.cpp &gt; change_box.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_table_omp.cpp &gt; bond_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_table.cpp &gt; bond_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_quartic_omp.cpp &gt; bond_quartic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_quartic.cpp &gt; bond_quartic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_nonlinear_omp.cpp &gt; bond_nonlinear_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_nonlinear.cpp &gt; bond_nonlinear.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_morse_omp.cpp &gt; bond_morse_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_morse.cpp &gt; bond_morse.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_hybrid.cpp &gt; bond_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_omp.cpp &gt; bond_harmonic_shift_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_cut_omp.cpp &gt; bond_harmonic_shift_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_cut.cpp &gt; bond_harmonic_shift_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift.cpp &gt; bond_harmonic_shift.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_omp.cpp &gt; bond_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_kokkos.cpp &gt; bond_harmonic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic.cpp &gt; bond_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_omp.cpp &gt; bond_fene_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_kokkos.cpp &gt; bond_fene_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_expand_omp.cpp &gt; bond_fene_expand_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_expand.cpp &gt; bond_fene_expand.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene.cpp &gt; bond_fene.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond.cpp &gt; bond.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_class2_omp.cpp &gt; bond_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_class2.cpp &gt; bond_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../body_nparticle.cpp &gt; body_nparticle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../body.cpp &gt; body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../balance.cpp &gt; balance.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_tri.cpp &gt; atom_vec_tri.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_template.cpp &gt; atom_vec_template.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_sphere.cpp &gt; atom_vec_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_peri.cpp &gt; atom_vec_peri.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_molecular_kokkos.cpp &gt; atom_vec_molecular_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_molecular.cpp &gt; atom_vec_molecular.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_meso.cpp &gt; atom_vec_meso.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_line.cpp &gt; atom_vec_line.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_kokkos.cpp &gt; atom_vec_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_hybrid.cpp &gt; atom_vec_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_full_kokkos.cpp &gt; atom_vec_full_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_full.cpp &gt; atom_vec_full.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_ellipsoid.cpp &gt; atom_vec_ellipsoid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_electron.cpp &gt; atom_vec_electron.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_dipole.cpp &gt; atom_vec_dipole.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec.cpp &gt; atom_vec.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_charge_kokkos.cpp &gt; atom_vec_charge_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_charge.cpp &gt; atom_vec_charge.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_bond_kokkos.cpp &gt; atom_vec_bond_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_bond.cpp &gt; atom_vec_bond.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_body.cpp &gt; atom_vec_body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_atomic_kokkos.cpp &gt; atom_vec_atomic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_atomic.cpp &gt; atom_vec_atomic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_angle_kokkos.cpp &gt; atom_vec_angle_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_angle.cpp &gt; atom_vec_angle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_map.cpp &gt; atom_map.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_kokkos.cpp &gt; atom_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom.cpp &gt; atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_table_omp.cpp &gt; angle_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_table.cpp &gt; angle_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_sdk_omp.cpp &gt; angle_sdk_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_sdk.cpp &gt; angle_sdk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_quartic_omp.cpp &gt; angle_quartic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_quartic.cpp &gt; angle_quartic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_hybrid.cpp &gt; angle_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic_omp.cpp &gt; angle_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic_kokkos.cpp &gt; angle_harmonic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic.cpp &gt; angle_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_simple_omp.cpp &gt; angle_fourier_simple_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_simple.cpp &gt; angle_fourier_simple.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_omp.cpp &gt; angle_fourier_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier.cpp &gt; angle_fourier.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_dipole_omp.cpp &gt; angle_dipole_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_dipole.cpp &gt; angle_dipole.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle.cpp &gt; angle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_squared_omp.cpp &gt; angle_cosine_squared_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_squared.cpp &gt; angle_cosine_squared.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_omp.cpp &gt; angle_cosine_shift_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_exp_omp.cpp &gt; angle_cosine_shift_exp_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_exp.cpp &gt; angle_cosine_shift_exp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift.cpp &gt; angle_cosine_shift.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_periodic_omp.cpp &gt; angle_cosine_periodic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_periodic.cpp &gt; angle_cosine_periodic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_omp.cpp &gt; angle_cosine_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_delta_omp.cpp &gt; angle_cosine_delta_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_delta.cpp &gt; angle_cosine_delta.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine.cpp &gt; angle_cosine.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_class2_omp.cpp &gt; angle_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_class2.cpp &gt; angle_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm_omp.cpp &gt; angle_charmm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm_kokkos.cpp &gt; angle_charmm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm.cpp &gt; angle_charmm.d
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CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_delta.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_delta_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_periodic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_periodic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_exp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_exp_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_squared.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_squared_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_dipole.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_dipole_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_simple.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_simple_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_quartic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_quartic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_sdk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_sdk_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_map.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_angle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_angle_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_atomic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_atomic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_bond.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_bond_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_charge.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_charge_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_dipole.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_electron.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_ellipsoid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_full.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_full_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_line.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_meso.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_molecular.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_molecular_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_peri.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_template.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_tri.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../balance.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../body_nparticle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_expand.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_expand_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_morse.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_morse_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_nonlinear.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_nonlinear_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_quartic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_quartic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../change_box.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../citeme.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../colvarproxy_lammps.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_brick.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_tiled.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ackland_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_angle_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_angmom_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_basal_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_body_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_bond_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_centro_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_chunk_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_cluster_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_cna_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_com_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_com.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_contact_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_coord_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_damage_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_dihedral_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_dilatation_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_displace_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_rigid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_sphere_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_event_displace.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_fep.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_group_group.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_gyration_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_gyration.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_heat_flux.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_improper_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_inertia_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ke_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ke_atom_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ke.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ke_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ke_rigid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_meso_e_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_meso_rho_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_meso_t_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_msd_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_msd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_msd_nongauss.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_omega_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_pair.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_pair_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_pe_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_pe.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_plasticity_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_pressure.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_property_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_property_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_property_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_rdf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_reduce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_reduce_region.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_slice.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_sna_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_snad_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_snav_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_spec_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_stress_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_com.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_cs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_deform.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_deform_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_partial.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_profile.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_ramp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_region.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_region_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_rotate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_temp_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ti.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_torque_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_vacf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_vcm_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../create_atoms.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../create_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../create_box.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../delete_atoms.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../delete_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_charmm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_charmm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_charmm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_cosine_shift_exp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_cosine_shift_exp_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_fourier.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_fourier_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_helix.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_helix_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_multi_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_multi_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_nharmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_nharmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_opls.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_opls_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_opls_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_quadratic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_quadratic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dihedral_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../displace_atoms.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../domain.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../domain_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../domain_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_atom_mpiio.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_cfg.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_cfg_mpiio.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_custom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_custom_mpiio.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_dcd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_image.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_movie.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_xtc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_xyz.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../dump_xyz_mpiio.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../error.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../ewald.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../ewald_disp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../ewald_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fft3d.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fft3d_wrap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../finish.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_adapt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_adapt_fep.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_addforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_addtorque.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_append_atoms.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_atom_swap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_correlate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_aveforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_histo.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_spatial.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_spatial_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ave_time.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_balance.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_bond_break.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_bond_create.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_bond_swap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_box_relax.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_colvars.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_deform.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_deposit.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_drag.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_dt_reset.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_efield.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_enforce2d.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_evaporate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_event.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_event_prd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_event_tad.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_external.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_freeze.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_gcmc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_gld.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_gle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_gravity.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_gravity_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_group.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_heat.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_imd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_indent.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ipi.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_langevin.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_langevin_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_langevin_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lb_fluid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lb_momentum.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lb_pc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lb_rigid_pc_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lb_viscous.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_lineforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_meso.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_meso_stationary.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_minimize.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_momentum.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_move.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_msst.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_neb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_asphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nh_sphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_asphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nph_sphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nphug.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nphug_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_asphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_npt_sphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_asphere_noforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_limit.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_line.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_noforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_sphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nve_tri.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_asphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_sllod.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_sllod_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_sllod_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_nvt_sphere_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_oneway.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_orient_fcc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_peri_neigh.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_peri_neigh_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_phonon.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_pimd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_planeforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_poems.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_pour.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_press_berendsen.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_print.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_property_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_comb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_comb_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_dynamic.cpp
../fix_qeq_dynamic.cpp:163:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
       sprintf(str,"Charges did not converge at step "BIGINT_FORMAT
                   ^
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_point.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_reax.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_shielded.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_qeq_slater.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rattle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_read_restart.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_reax_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_reaxc_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_reax_c.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_reaxc_species.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_recenter.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_respa.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_restrain.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nh.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nh_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nh_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nph.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nph_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nph_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_npt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_npt_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_npt_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nve.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nve_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nve_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nvt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nvt_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_nvt_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_small.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_rigid_small_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_setforce.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_shake.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_shear_history.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_shear_history_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_smd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_spring.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_spring_rg.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_spring_self.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_srd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_srp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_store.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_store_force.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_store_state.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_temp_berendsen.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_temp_csld.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_temp_csvr.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_temp_rescale.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_temp_rescale_eff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_tfmc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_thermal_conductivity.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ti_rs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ti_spring.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_tmd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ttm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_ttm_mod.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_tune_kspace.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_vector.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_viscosity.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_viscous.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_colloid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_gran.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_gran_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_lj1043.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_lj126.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_lj93.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_piston.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_reflect.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_region.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../fix_wall_srd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../force.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../gridcomm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../group.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../group_ndx.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../image.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_cossq.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_cossq_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_cvff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_cvff_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_fourier.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_fourier_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_harmonic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_ring.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_ring_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_umbrella.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../improper_umbrella_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../input.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../integrate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../intel_buffers.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../irregular.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../kspace.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../lammps.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../lattice.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../library.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../main.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../math_extra.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../memory.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_cg.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_fire.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_hftn.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../minimize.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_linesearch.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_quickmin.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../min_sd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../modify.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../modify_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../molecule.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../msm_cg.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../msm_cg_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_bond.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_bond_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neighbor.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neighbor_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_derive.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_derive_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_full.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_full_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_gran.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_gran_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_bin.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_bin_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_bin_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_multi.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_multi_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_nsq.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_half_nsq_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_list.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_list_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_request.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_respa.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_respa_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../neigh_stencil.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../output.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_adp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_adp_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_airebo.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_airebo_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_beck.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_beck_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_bop.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_long_cs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_wolf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_coul_wolf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_born_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_brownian.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_brownian_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_brownian_poly.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_brownian_poly_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_cut_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_long_cs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_long_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_long_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_long_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_buck_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_cdeam.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_cdeam_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_colloid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_colloid_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_comb3.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_comb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_comb_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_cut_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_cut_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_cut_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_debye.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_debye_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_debye_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_diel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_diel_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_dsf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_dsf_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_dsf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_long_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_long_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_long_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_streitz.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_wolf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_wolf_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_coul_wolf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_dpd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_dpd_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_dpd_tstat.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_dpd_tstat_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_dsmc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_alloy.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_alloy_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_alloy_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_alloy_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_fs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_fs_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_fs_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_fs_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eam_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_edip.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_edip_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eff_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eim.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_eim_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gauss.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gauss_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gauss_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gauss_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gayberne.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gayberne_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gayberne_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hertz_history.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hertz_history_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hooke.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hooke_history.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hooke_history_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_gran_hooke_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hbond_dreiding_lj.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hbond_dreiding_lj_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hbond_dreiding_morse.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hbond_dreiding_morse_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_hybrid_overlay.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lcbop.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_line_lj.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_line_lj_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_list.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj96_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj96_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm_implicit.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm_implicit_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm_implicit_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_charmm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_long_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_charmm_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_cut_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_long_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cubic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cubic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_cut_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_cut_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_cut_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_debye.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_debye_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_debye_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_dsf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_dsf_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_dsf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_long_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_dipole_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_dipole_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_dipole_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_long_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_long_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_cut_tip4p_long_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_expand.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_expand_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_expand_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs_coul_gromacs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs_coul_gromacs_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs_coul_gromacs_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_gromacs_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_coul_long_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_dipole_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_tip4p_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_long_tip4p_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_coul_msm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_coul_msm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sdk_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sf_dipole_sf.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sf_dipole_sf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_sf_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_smooth.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_smooth_linear.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_smooth_linear_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lj_smooth_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricate_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricate_poly.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricate_poly_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricateU.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_lubricateU_poly.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_meam.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_meam_spline.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_meam_spline_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_meam_sw_spline.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_mie_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_morse.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_morse_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_morse_opt.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nb3b_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nb3b_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut_coul_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut_coul_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut_coul_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut_coul_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_nm_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_eps.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_lps.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_lps_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_pmb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_pmb_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_peri_ves.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_reax_c.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_reax.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_rebo.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_rebo_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_resquared.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_resquared_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_snap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_heatconduction.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_idealgas.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_lj.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_rhosum.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_taitwater.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sph_taitwater_morris.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_srp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sw.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sw_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sw_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_sw_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_table_kokkos.cpp
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 0; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:83:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 0; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:83:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 0; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:83:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 0; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:83:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 0&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 1; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:85:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 1; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:85:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 1; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:85:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 1; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:85:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 1&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 2; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:87:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 2; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:87:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 2; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:87:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 2; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:87:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 2&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 3; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:89:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = false; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, false, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:128:67:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 3; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:89:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_fpair(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:128:40:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 3; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:89:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:225:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:230:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:236:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
../pair_table_kokkos.cpp: In instantiation of 'F_FLOAT LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_evdwl(const F_FLOAT&amp;, const int&amp;, const int&amp;, const int&amp;, const int&amp;) const [with bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; DeviceType = Kokkos::OpenMP; F_FLOAT = double]':
../pair_kokkos.h:143:31:   required from 'EV_FLOAT LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::compute_item(const int&amp;, const LAMMPS_NS::NeighListKokkos&lt;typename PairStyle::device_type&gt;&amp;, const LAMMPS_NS::NoCoulTag&amp;) const [with int EVFLAG = 1; int NEWTON_PAIR = 1; PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; EV_FLOAT = s_EV_FLOAT; typename PairStyle::device_type = Kokkos::OpenMP]'
../pair_kokkos.h:330:36:   required from 'void LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::operator()(int, LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type&amp;) const [with PairStyle = LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;; int NEIGHFLAG = 1; bool STACKPARAMS = true; Specialisation = LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;; LAMMPS_NS::PairComputeFunctor&lt;PairStyle, NEIGHFLAG, STACKPARAMS, Specialisation&gt;::value_type = s_EV_FLOAT]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:140:33:   required from 'static void Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::driver(typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type, Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type, const PType&amp;) [with PType = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;::WorkRange; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;Kokkos::Impl::is_same&lt;typename PType::work_tag, void&gt;::value, const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::reference_type = s_EV_FLOAT&amp;]'
../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp:182:13:   required from 'Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::ParallelReduce(typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type, const Policy&amp;, const ViewType&amp;) [with ViewType = Kokkos::View&lt;s_EV_FLOAT, Kokkos::HostSpace, Kokkos::MemoryTraits&lt;1u&gt;, void, Kokkos::Impl::ViewDefault&gt;; FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; Arg0 = Kokkos::OpenMP; Arg1 = void; Arg2 = void; typename Kokkos::Impl::enable_if&lt;(Kokkos::Impl::is_view&lt;ViewType&gt;::value &amp;&amp; Kokkos::Impl::is_same&lt;typename ViewType::memory_space, Kokkos::HostSpace&gt;::value), const FunctorType&amp;&gt;::type = const LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;&amp;; Kokkos::Impl::ParallelReduce&lt;FunctorType, Kokkos::RangePolicy&lt;Arg0, Arg1, Arg2, Kokkos::OpenMP&gt; &gt;::Policy = Kokkos::RangePolicy&lt;Kokkos::OpenMP, void, void, Kokkos::OpenMP&gt;]'
../../lib/kokkos/core/src/Kokkos_Parallel.hpp:377:3:   required from 'void Kokkos::parallel_reduce(size_t, const FunctorType&amp;, typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type) [with FunctorType = LAMMPS_NS::PairComputeFunctor&lt;LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;, 1, true, LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt; &gt;; size_t = long unsigned int; typename Kokkos::Impl::FunctorValueTraits&lt;FunctorType, void&gt;::reference_type = s_EV_FLOAT&amp;]'
../pair_table_kokkos.cpp:163:66:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute_style(int, int) [with int TABSTYLE = 3; DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:89:18:   required from 'void LAMMPS_NS::PairTableKokkos&lt;DeviceType&gt;::compute(int, int) [with DeviceType = Kokkos::OpenMP]'
../pair_table_kokkos.cpp:1378:16:   required from here
../pair_table_kokkos.cpp:270:32: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   if (Specialisation::TabStyle == LOOKUP) {
                                ^
../pair_table_kokkos.cpp:275:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == LINEAR) {
                                       ^
../pair_table_kokkos.cpp:281:39: warning: comparison between 'enum LAMMPS_NS::S_TableCompute&lt;Kokkos::OpenMP, 3&gt;::&lt;anonymous&gt;' and 'enum LAMMPS_NS::PairTableKokkos&lt;Kokkos::OpenMP&gt;::&lt;anonymous&gt;' [-Wenum-compare]
   } else if (Specialisation::TabStyle == SPLINE) {
                                       ^
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_mod.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_mod_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_mod_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_zbl.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_zbl_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tersoff_zbl_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_long.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_long_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_long_soft.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tip4p_long_soft_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tri_lj.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_tri_lj_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_yukawa_colloid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_yukawa_colloid_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_yukawa.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_yukawa_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_zbl.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pair_zbl_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_cg.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_cg_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_disp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_disp_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_disp_tip4p.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_disp_tip4p_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_stagger.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_tip4p.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../pppm_tip4p_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../prd.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../procmap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../random_mars.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../random_park.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../rcb.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../read_data.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../read_dump.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reader.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reader_native.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reader_xyz.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../read_restart.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_allocate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_bond_orders.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_control.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_ffield.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_forces.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_hydrogen_bonds.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_init_md.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_io_tools.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_list.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_lookup.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_multi_body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_nonbonded.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_reset_tools.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_system_props.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_tool_box.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_torsion_angles.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_traj.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_valence_angles.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../reaxc_vector.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_block.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_cone.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_cylinder.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_intersect.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_plane.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_prism.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../region_union.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../remap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../remap_wrap.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../replicate.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../rerun.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../respa.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../respa_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../restart_mpiio.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../run.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../set.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../sna.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../special.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../tad.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../temper.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../thermo.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../thr_data.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../thr_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../timer.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../universe.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../update.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../variable.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../velocity.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../verlet.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../verlet_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../verlet_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../verlet_split.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../verlet_split_intel.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../write_data.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../write_dump.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../write_restart.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../xdr_compat.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_Core.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_Error.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_HostSpace.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_hwloc.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_Serial.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_Serial_TaskPolicy.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_Shape.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/impl/Kokkos_spinwait.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/containers/src/impl/Kokkos_UnorderedMap_impl.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/Threads/Kokkos_ThreadsExec_base.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../../lib/kokkos/core/src/OpenMP/Kokkos_OpenMPexec.cpp
ar cr libkokkoscore.a Kokkos_Core.o Kokkos_Error.o Kokkos_HostSpace.o Kokkos_hwloc.o Kokkos_Serial.o Kokkos_Serial_TaskPolicy.o Kokkos_Shape.o Kokkos_spinwait.o Kokkos_UnorderedMap_impl.o Kokkos_ThreadsExec_base.o Kokkos_ThreadsExec.o Kokkos_OpenMPexec.o	
touch kokkos_depend.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c kokkos_depend.cpp
CC -O -L../../lib/colvars -L../../lib/reax -L../../lib/poems -L../../lib/meam         angle_charmm.o angle_charmm_kokkos.o angle_charmm_omp.o angle_class2.o angle_class2_omp.o angle_cosine.o angle_cosine_delta.o angle_cosine_delta_omp.o angle_cosine_omp.o angle_cosine_periodic.o angle_cosine_periodic_omp.o angle_cosine_shift.o angle_cosine_shift_exp.o angle_cosine_shift_exp_omp.o angle_cosine_shift_omp.o angle_cosine_squared.o angle_cosine_squared_omp.o angle.o angle_dipole.o angle_dipole_omp.o angle_fourier.o angle_fourier_omp.o angle_fourier_simple.o angle_fourier_simple_omp.o angle_harmonic.o angle_harmonic_kokkos.o angle_harmonic_omp.o angle_hybrid.o angle_quartic.o angle_quartic_omp.o angle_sdk.o angle_sdk_omp.o angle_table.o angle_table_omp.o atom.o atom_kokkos.o atom_map.o atom_vec_angle.o atom_vec_angle_kokkos.o atom_vec_atomic.o atom_vec_atomic_kokkos.o atom_vec_body.o atom_vec_bond.o atom_vec_bond_kokkos.o atom_vec_charge.o atom_vec_charge_kokkos.o atom_vec.o atom_vec_dipole.o atom_vec_electron.o atom_vec_ellipsoid.o atom_vec_full.o atom_vec_full_kokkos.o atom_vec_hybrid.o atom_vec_kokkos.o atom_vec_line.o atom_vec_meso.o atom_vec_molecular.o atom_vec_molecular_kokkos.o atom_vec_peri.o atom_vec_sphere.o atom_vec_template.o atom_vec_tri.o balance.o body.o body_nparticle.o bond_class2.o bond_class2_omp.o bond.o bond_fene.o bond_fene_expand.o bond_fene_expand_omp.o bond_fene_kokkos.o bond_fene_omp.o bond_harmonic.o bond_harmonic_kokkos.o bond_harmonic_omp.o bond_harmonic_shift.o bond_harmonic_shift_cut.o bond_harmonic_shift_cut_omp.o bond_harmonic_shift_omp.o bond_hybrid.o bond_morse.o bond_morse_omp.o bond_nonlinear.o bond_nonlinear_omp.o bond_quartic.o bond_quartic_omp.o bond_table.o bond_table_omp.o change_box.o citeme.o colvarproxy_lammps.o comm_brick.o comm.o comm_kokkos.o comm_tiled.o compute_ackland_atom.o compute_angle_local.o compute_angmom_chunk.o compute_basal_atom.o compute_body_local.o compute_bond_local.o compute_centro_atom.o compute_chunk_atom.o compute_cluster_atom.o compute_cna_atom.o compute_com_chunk.o compute_com.o compute_contact_atom.o compute_coord_atom.o compute.o compute_damage_atom.o compute_dihedral_local.o compute_dilatation_atom.o compute_displace_atom.o compute_erotate_asphere.o compute_erotate_rigid.o compute_erotate_sphere_atom.o compute_erotate_sphere.o compute_event_displace.o compute_fep.o compute_group_group.o compute_gyration_chunk.o compute_gyration.o compute_heat_flux.o compute_improper_local.o compute_inertia_chunk.o compute_ke_atom.o compute_ke_atom_eff.o compute_ke.o compute_ke_eff.o compute_ke_rigid.o compute_meso_e_atom.o compute_meso_rho_atom.o compute_meso_t_atom.o compute_msd_chunk.o compute_msd.o compute_msd_nongauss.o compute_omega_chunk.o compute_pair.o compute_pair_local.o compute_pe_atom.o compute_pe.o compute_plasticity_atom.o compute_pressure.o compute_property_atom.o compute_property_chunk.o compute_property_local.o compute_rdf.o compute_reduce.o compute_reduce_region.o compute_slice.o compute_sna_atom.o compute_snad_atom.o compute_snav_atom.o compute_spec_atom.o compute_stress_atom.o compute_temp_asphere.o compute_temp_chunk.o compute_temp_com.o compute_temp.o compute_temp_cs.o compute_temp_deform.o compute_temp_deform_eff.o compute_temp_eff.o compute_temp_partial.o compute_temp_profile.o compute_temp_ramp.o compute_temp_region.o compute_temp_region_eff.o compute_temp_rotate.o compute_temp_sphere.o compute_ti.o compute_torque_chunk.o compute_vacf.o compute_vcm_chunk.o create_atoms.o create_bonds.o create_box.o delete_atoms.o delete_bonds.o dihedral_charmm.o dihedral_charmm_kokkos.o dihedral_charmm_omp.o dihedral_class2.o dihedral_class2_omp.o dihedral_cosine_shift_exp.o dihedral_cosine_shift_exp_omp.o dihedral.o dihedral_fourier.o dihedral_fourier_omp.o dihedral_harmonic.o dihedral_harmonic_omp.o dihedral_helix.o dihedral_helix_omp.o dihedral_hybrid.o dihedral_multi_harmonic.o dihedral_multi_harmonic_omp.o dihedral_nharmonic.o dihedral_nharmonic_omp.o dihedral_opls.o dihedral_opls_kokkos.o dihedral_opls_omp.o dihedral_quadratic.o dihedral_quadratic_omp.o dihedral_table.o dihedral_table_omp.o displace_atoms.o domain.o domain_kokkos.o domain_omp.o dump_atom.o dump_atom_mpiio.o dump_cfg.o dump_cfg_mpiio.o dump.o dump_custom.o dump_custom_mpiio.o dump_dcd.o dump_image.o dump_local.o dump_movie.o dump_xtc.o dump_xyz.o dump_xyz_mpiio.o error.o ewald.o ewald_disp.o ewald_omp.o fft3d.o fft3d_wrap.o finish.o fix_adapt.o fix_adapt_fep.o fix_addforce.o fix_addtorque.o fix_append_atoms.o fix_atom_swap.o fix_ave_atom.o fix_ave_chunk.o fix_ave_correlate.o fix_aveforce.o fix_ave_histo.o fix_ave_spatial.o fix_ave_spatial_sphere.o fix_ave_time.o fix_balance.o fix_bond_break.o fix_bond_create.o fix_bond_swap.o fix_box_relax.o fix_colvars.o fix.o fix_deform.o fix_deposit.o fix_drag.o fix_dt_reset.o fix_efield.o fix_enforce2d.o fix_evaporate.o fix_event.o fix_event_prd.o fix_event_tad.o fix_external.o fix_freeze.o fix_gcmc.o fix_gld.o fix_gle.o fix_gravity.o fix_gravity_omp.o fix_group.o fix_heat.o fix_imd.o fix_indent.o fix_intel.o fix_ipi.o fix_langevin.o fix_langevin_eff.o fix_langevin_kokkos.o fix_lb_fluid.o fix_lb_momentum.o fix_lb_pc.o fix_lb_rigid_pc_sphere.o fix_lb_viscous.o fix_lineforce.o fix_meso.o fix_meso_stationary.o fix_minimize.o fix_momentum.o fix_move.o fix_msst.o fix_neb.o fix_nh_asphere.o fix_nh_asphere_omp.o fix_nh.o fix_nh_eff.o fix_nh_omp.o fix_nh_sphere.o fix_nh_sphere_omp.o fix_nph_asphere.o fix_nph_asphere_omp.o fix_nph.o fix_nph_eff.o fix_nph_omp.o fix_nph_sphere.o fix_nph_sphere_omp.o fix_nphug.o fix_nphug_omp.o fix_npt_asphere.o fix_npt_asphere_omp.o fix_npt.o fix_npt_eff.o fix_npt_omp.o fix_npt_sphere.o fix_npt_sphere_omp.o fix_nve_asphere.o fix_nve_asphere_noforce.o fix_nve_body.o fix_nve.o fix_nve_eff.o fix_nve_kokkos.o fix_nve_limit.o fix_nve_line.o fix_nve_noforce.o fix_nve_omp.o fix_nve_sphere.o fix_nve_sphere_omp.o fix_nve_tri.o fix_nvt_asphere.o fix_nvt_asphere_omp.o fix_nvt.o fix_nvt_eff.o fix_nvt_omp.o fix_nvt_sllod.o fix_nvt_sllod_eff.o fix_nvt_sllod_omp.o fix_nvt_sphere.o fix_nvt_sphere_omp.o fix_omp.o fix_oneway.o fix_orient_fcc.o fix_peri_neigh.o fix_peri_neigh_omp.o fix_phonon.o fix_pimd.o fix_planeforce.o fix_poems.o fix_pour.o fix_press_berendsen.o fix_print.o fix_property_atom.o fix_qeq_comb.o fix_qeq_comb_omp.o fix_qeq.o fix_qeq_dynamic.o fix_qeq_point.o fix_qeq_reax.o fix_qeq_shielded.o fix_qeq_slater.o fix_rattle.o fix_read_restart.o fix_reax_bonds.o fix_reaxc_bonds.o fix_reax_c.o fix_reaxc_species.o fix_recenter.o fix_respa.o fix_restrain.o fix_rigid.o fix_rigid_nh.o fix_rigid_nh_omp.o fix_rigid_nh_small.o fix_rigid_nph.o fix_rigid_nph_omp.o fix_rigid_nph_small.o fix_rigid_npt.o fix_rigid_npt_omp.o fix_rigid_npt_small.o fix_rigid_nve.o fix_rigid_nve_omp.o fix_rigid_nve_small.o fix_rigid_nvt.o fix_rigid_nvt_omp.o fix_rigid_nvt_small.o fix_rigid_omp.o fix_rigid_small.o fix_rigid_small_omp.o fix_setforce.o fix_shake.o fix_shear_history.o fix_shear_history_omp.o fix_smd.o fix_spring.o fix_spring_rg.o fix_spring_self.o fix_srd.o fix_srp.o fix_store.o fix_store_force.o fix_store_state.o fix_temp_berendsen.o fix_temp_csld.o fix_temp_csvr.o fix_temp_rescale.o fix_temp_rescale_eff.o fix_tfmc.o fix_thermal_conductivity.o fix_ti_rs.o fix_ti_spring.o fix_tmd.o fix_ttm.o fix_ttm_mod.o fix_tune_kspace.o fix_vector.o fix_viscosity.o fix_viscous.o fix_wall_colloid.o fix_wall.o fix_wall_gran.o fix_wall_gran_omp.o fix_wall_harmonic.o fix_wall_lj1043.o fix_wall_lj126.o fix_wall_lj93.o fix_wall_piston.o fix_wall_reflect.o fix_wall_region.o fix_wall_srd.o force.o gridcomm.o group.o group_ndx.o image.o improper_class2.o improper_class2_omp.o improper_cossq.o improper_cossq_omp.o improper.o improper_cvff.o improper_cvff_omp.o improper_fourier.o improper_fourier_omp.o improper_harmonic.o improper_harmonic_kokkos.o improper_harmonic_omp.o improper_hybrid.o improper_ring.o improper_ring_omp.o improper_umbrella.o improper_umbrella_omp.o input.o integrate.o intel_buffers.o irregular.o kokkos.o kspace.o lammps.o lattice.o library.o main.o math_extra.o memory.o min_cg.o min.o min_fire.o min_hftn.o minimize.o min_linesearch.o min_quickmin.o min_sd.o modify.o modify_kokkos.o molecule.o msm_cg.o msm_cg_omp.o msm.o msm_omp.o neb.o neigh_bond.o neigh_bond_kokkos.o neighbor.o neighbor_kokkos.o neigh_derive.o neigh_derive_omp.o neigh_full.o neigh_full_omp.o neigh_gran.o neigh_gran_omp.o neigh_half_bin.o neigh_half_bin_intel.o neigh_half_bin_omp.o neigh_half_multi.o neigh_half_multi_omp.o neigh_half_nsq.o neigh_half_nsq_omp.o neigh_list.o neigh_list_kokkos.o neigh_request.o neigh_respa.o neigh_respa_omp.o neigh_stencil.o output.o pair_adp.o pair_adp_omp.o pair_airebo.o pair_airebo_omp.o pair_beck.o pair_beck_omp.o pair_body.o pair_bop.o pair_born_coul_long.o pair_born_coul_long_cs.o pair_born_coul_long_omp.o pair_born_coul_msm.o pair_born_coul_msm_omp.o pair_born_coul_wolf.o pair_born_coul_wolf_omp.o pair_born.o pair_born_omp.o pair_brownian.o pair_brownian_omp.o pair_brownian_poly.o pair_brownian_poly_omp.o pair_buck_coul_cut.o pair_buck_coul_cut_kokkos.o pair_buck_coul_cut_omp.o pair_buck_coul_long.o pair_buck_coul_long_cs.o pair_buck_coul_long_kokkos.o pair_buck_coul_long_omp.o pair_buck_coul_msm.o pair_buck_coul_msm_omp.o pair_buck.o pair_buck_kokkos.o pair_buck_long_coul_long.o pair_buck_long_coul_long_omp.o pair_buck_omp.o pair_cdeam.o pair_cdeam_omp.o pair_colloid.o pair_colloid_omp.o pair_comb3.o pair_comb.o pair_comb_omp.o pair_coul_cut.o pair_coul_cut_kokkos.o pair_coul_cut_omp.o pair_coul_cut_soft.o pair_coul_cut_soft_omp.o pair_coul_debye.o pair_coul_debye_kokkos.o pair_coul_debye_omp.o pair_coul_diel.o pair_coul_diel_omp.o pair_coul_dsf.o pair_coul_dsf_kokkos.o pair_coul_dsf_omp.o pair_coul_long.o pair_coul_long_kokkos.o pair_coul_long_omp.o pair_coul_long_soft.o pair_coul_long_soft_omp.o pair_coul_msm.o pair_coul_msm_omp.o pair_coul_streitz.o pair_coul_wolf.o pair_coul_wolf_kokkos.o pair_coul_wolf_omp.o pair.o pair_dpd.o pair_dpd_omp.o pair_dpd_tstat.o pair_dpd_tstat_omp.o pair_dsmc.o pair_eam_alloy.o pair_eam_alloy_kokkos.o pair_eam_alloy_omp.o pair_eam_alloy_opt.o pair_eam.o pair_eam_fs.o pair_eam_fs_kokkos.o pair_eam_fs_omp.o pair_eam_fs_opt.o pair_eam_kokkos.o pair_eam_omp.o pair_eam_opt.o pair_edip.o pair_edip_omp.o pair_eff_cut.o pair_eim.o pair_eim_omp.o pair_gauss.o pair_gauss_cut.o pair_gauss_cut_omp.o pair_gauss_omp.o pair_gayberne.o pair_gayberne_intel.o pair_gayberne_omp.o pair_gran_hertz_history.o pair_gran_hertz_history_omp.o pair_gran_hooke.o pair_gran_hooke_history.o pair_gran_hooke_history_omp.o pair_gran_hooke_omp.o pair_hbond_dreiding_lj.o pair_hbond_dreiding_lj_omp.o pair_hbond_dreiding_morse.o pair_hbond_dreiding_morse_omp.o pair_hybrid.o pair_hybrid_overlay.o pair_lcbop.o pair_line_lj.o pair_line_lj_omp.o pair_list.o pair_lj96_cut.o pair_lj96_cut_omp.o pair_lj_charmm_coul_charmm.o pair_lj_charmm_coul_charmm_implicit.o pair_lj_charmm_coul_charmm_implicit_kokkos.o pair_lj_charmm_coul_charmm_implicit_omp.o pair_lj_charmm_coul_charmm_kokkos.o pair_lj_charmm_coul_charmm_omp.o pair_lj_charmm_coul_long.o pair_lj_charmm_coul_long_intel.o pair_lj_charmm_coul_long_kokkos.o pair_lj_charmm_coul_long_omp.o pair_lj_charmm_coul_long_opt.o pair_lj_charmm_coul_long_soft.o pair_lj_charmm_coul_long_soft_omp.o pair_lj_charmm_coul_msm.o pair_lj_charmm_coul_msm_omp.o pair_lj_class2_coul_cut.o pair_lj_class2_coul_cut_kokkos.o pair_lj_class2_coul_cut_omp.o pair_lj_class2_coul_long.o pair_lj_class2_coul_long_kokkos.o pair_lj_class2_coul_long_omp.o pair_lj_class2.o pair_lj_class2_kokkos.o pair_lj_class2_omp.o pair_lj_cubic.o pair_lj_cubic_omp.o pair_lj_cut_coul_cut.o pair_lj_cut_coul_cut_kokkos.o pair_lj_cut_coul_cut_omp.o pair_lj_cut_coul_cut_soft.o pair_lj_cut_coul_cut_soft_omp.o pair_lj_cut_coul_debye.o pair_lj_cut_coul_debye_kokkos.o pair_lj_cut_coul_debye_omp.o pair_lj_cut_coul_dsf.o pair_lj_cut_coul_dsf_kokkos.o pair_lj_cut_coul_dsf_omp.o pair_lj_cut_coul_long.o pair_lj_cut_coul_long_intel.o pair_lj_cut_coul_long_kokkos.o pair_lj_cut_coul_long_omp.o pair_lj_cut_coul_long_opt.o pair_lj_cut_coul_long_soft.o pair_lj_cut_coul_long_soft_omp.o pair_lj_cut_coul_msm.o pair_lj_cut_coul_msm_omp.o pair_lj_cut.o pair_lj_cut_dipole_cut.o pair_lj_cut_dipole_cut_omp.o pair_lj_cut_dipole_long.o pair_lj_cut_intel.o pair_lj_cut_kokkos.o pair_lj_cut_omp.o pair_lj_cut_opt.o pair_lj_cut_soft.o pair_lj_cut_soft_omp.o pair_lj_cut_tip4p_cut.o pair_lj_cut_tip4p_cut_omp.o pair_lj_cut_tip4p_long.o pair_lj_cut_tip4p_long_omp.o pair_lj_cut_tip4p_long_opt.o pair_lj_cut_tip4p_long_soft.o pair_lj_cut_tip4p_long_soft_omp.o pair_lj_expand.o pair_lj_expand_kokkos.o pair_lj_expand_omp.o pair_lj_gromacs_coul_gromacs.o pair_lj_gromacs_coul_gromacs_kokkos.o pair_lj_gromacs_coul_gromacs_omp.o pair_lj_gromacs.o pair_lj_gromacs_kokkos.o pair_lj_gromacs_omp.o pair_lj_long_coul_long.o pair_lj_long_coul_long_omp.o pair_lj_long_coul_long_opt.o pair_lj_long_dipole_long.o pair_lj_long_tip4p_long.o pair_lj_long_tip4p_long_omp.o pair_lj_sdk_coul_long.o pair_lj_sdk_coul_long_omp.o pair_lj_sdk_coul_msm.o pair_lj_sdk_coul_msm_omp.o pair_lj_sdk.o pair_lj_sdk_kokkos.o pair_lj_sdk_omp.o pair_lj_sf.o pair_lj_sf_dipole_sf.o pair_lj_sf_dipole_sf_omp.o pair_lj_sf_omp.o pair_lj_smooth.o pair_lj_smooth_linear.o pair_lj_smooth_linear_omp.o pair_lj_smooth_omp.o pair_lubricate.o pair_lubricate_omp.o pair_lubricate_poly.o pair_lubricate_poly_omp.o pair_lubricateU.o pair_lubricateU_poly.o pair_meam.o pair_meam_spline.o pair_meam_spline_omp.o pair_meam_sw_spline.o pair_mie_cut.o pair_morse.o pair_morse_omp.o pair_morse_opt.o pair_nb3b_harmonic.o pair_nb3b_harmonic_omp.o pair_nm_cut_coul_cut.o pair_nm_cut_coul_cut_omp.o pair_nm_cut_coul_long.o pair_nm_cut_coul_long_omp.o pair_nm_cut.o pair_nm_cut_omp.o pair_peri_eps.o pair_peri_lps.o pair_peri_lps_omp.o pair_peri_pmb.o pair_peri_pmb_omp.o pair_peri_ves.o pair_reax_c.o pair_reax.o pair_rebo.o pair_rebo_omp.o pair_resquared.o pair_resquared_omp.o pair_snap.o pair_soft.o pair_soft_omp.o pair_sph_heatconduction.o pair_sph_idealgas.o pair_sph_lj.o pair_sph_rhosum.o pair_sph_taitwater.o pair_sph_taitwater_morris.o pair_srp.o pair_sw.o pair_sw_intel.o pair_sw_kokkos.o pair_sw_omp.o pair_table.o pair_table_kokkos.o pair_table_omp.o pair_tersoff.o pair_tersoff_kokkos.o pair_tersoff_mod.o pair_tersoff_mod_kokkos.o pair_tersoff_mod_omp.o pair_tersoff_omp.o pair_tersoff_table.o pair_tersoff_table_omp.o pair_tersoff_zbl.o pair_tersoff_zbl_kokkos.o pair_tersoff_zbl_omp.o pair_tip4p_cut.o pair_tip4p_cut_omp.o pair_tip4p_long.o pair_tip4p_long_omp.o pair_tip4p_long_soft.o pair_tip4p_long_soft_omp.o pair_tri_lj.o pair_tri_lj_omp.o pair_yukawa_colloid.o pair_yukawa_colloid_omp.o pair_yukawa.o pair_yukawa_omp.o pair_zbl.o pair_zbl_omp.o pppm_cg.o pppm_cg_omp.o pppm.o pppm_disp.o pppm_disp_omp.o pppm_disp_tip4p.o pppm_disp_tip4p_omp.o pppm_omp.o pppm_stagger.o pppm_tip4p.o pppm_tip4p_omp.o prd.o procmap.o random_mars.o random_park.o rcb.o read_data.o read_dump.o reader.o reader_native.o reader_xyz.o read_restart.o reaxc_allocate.o reaxc_bond_orders.o reaxc_bonds.o reaxc_control.o reaxc_ffield.o reaxc_forces.o reaxc_hydrogen_bonds.o reaxc_init_md.o reaxc_io_tools.o reaxc_list.o reaxc_lookup.o reaxc_multi_body.o reaxc_nonbonded.o reaxc_reset_tools.o reaxc_system_props.o reaxc_tool_box.o reaxc_torsion_angles.o reaxc_traj.o reaxc_valence_angles.o reaxc_vector.o region_block.o region_cone.o region.o region_cylinder.o region_intersect.o region_plane.o region_prism.o region_sphere.o region_union.o remap.o remap_wrap.o replicate.o rerun.o respa.o respa_omp.o restart_mpiio.o run.o set.o sna.o special.o tad.o temper.o thermo.o thr_data.o thr_omp.o timer.o universe.o update.o variable.o velocity.o verlet.o verlet_intel.o verlet_kokkos.o verlet_split.o verlet_split_intel.o write_data.o write_dump.o write_restart.o xdr_compat.o kokkos_depend.o -lcolvars -lreax -lpoems -lmeam -lkokkoscore      -lgfortran -lgfortran -fopenmp -L./ libkokkoscore.a -lpthread  -lquadmath -o ../lmp_xe6
size ../lmp_xe6
   text	   data	    bss	    dec	    hex	filename
26981644	 266248	1612667304	1639915196	61bf1ebc	../lmp_xe6
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src/Obj_xe6'
  if [ $? -ne 0 ] ; then
    echo "$PACKAGE make failed"
    exit 1
  fi

mkdir $SW_BLDDIR/bin
cp lmp_xe6  ${SW_BLDDIR}/bin

cd ../

############################### if this far, return 0
exit 0
['/scratch/system/bwjenkins/tests/lammps/15May15']
/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/rebuild : passed (0)

[SSH] completed
[SSH] exit-status: 0

[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"

echo $PATH $SW_CONFIG $PYTHONPATH $SW_WORKDIR &gt; /dev/null
export SW_CONFIG=$SW_CONFIG
export SW_WORKDIR=$SW_WORKDIR
# added by tbouvet 1 line
#export PATH=/sw/tools/bin:/opt/torque/6.0.3/bin/:$PATH

cd $SW_ROOT
cd lammps/15May15/cle5.2_gnu4.9.3
# copy remodule with changes to work with gcc/4.9.3 after move to gcc/6.3.0
cp /u/system/bwjenkins/remodule.lammps remodule
# added next line tbouvet
#export SW_BLDDIR=`pwd`
swtestwait


[SSH] executing...
Waiting for job 12490721.bw to start ... 
Waiting for job 12490721.bw to start ... 
Waiting for job 12490721.bw to start ... 
Waiting for job 12490721.bw to start ... 
Waiting for job 12490721.bw to start ... 
Submitted job 12490721.bw is running. Following .running ... 
12490721.bw
Displaying test.log:
['/scratch/system/bwjenkins/tests/lammps/15May15']
/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/retest : batch submitted (2)
----------------------------------------
Begin Torque Prologue on nid27641
at Mon Aug  2 00:31:00 CDT 2021
Job Id:			12490721.bw
Username:		bwjenkins
Group:			BW_System
Job name:		lammps.rhodo
Requested resources:	nodes=1:ppn=32,walltime=00:10:00,neednodes=1:ppn=32
Queue:			normal
Account:		jnc
End Torque Prologue:  0.130 elapsed
----------------------------------------




cd $PBS_O_WORKDIR

echo unverified &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status
chmod g+w /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status


LAMMPS_BIN=/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/bin/lmp_xe6
aprun -n 4 $LAMMPS_BIN -in in.rhodo.scaled
LAMMPS (15 May 2015)
WARNING: OMP_NUM_THREADS environment is not set. (../comm.cpp:89)
  using 1 OpenMP thread(s) per MPI task
Reading data file ...
  orthogonal box = (-27.5 -38.5 -36.3646) to (27.5 38.5 36.3615)
  1 by 2 by 2 MPI processor grid
  reading atoms ...
  32000 atoms
  reading velocities ...
  32000 velocities
  scanning bonds ...
  4 = max bonds/atom
  scanning angles ...
  8 = max angles/atom
  scanning dihedrals ...
  18 = max dihedrals/atom
  scanning impropers ...
  2 = max impropers/atom
  reading bonds ...
  27723 bonds
  reading angles ...
  40467 angles
  reading dihedrals ...
  56829 dihedrals
  reading impropers ...
  1034 impropers
Finding 1-2 1-3 1-4 neighbors ...
 Special bond factors lj:   0          0          0         
 Special bond factors coul: 0          0          0         
  4 = max # of 1-2 neighbors
  12 = max # of 1-3 neighbors
  24 = max # of 1-4 neighbors
  26 = max # of special neighbors
Replicating atoms ...
  orthogonal box = (-27.5 -38.5 -36.3646) to (27.5 38.5 36.3615)
  1 by 2 by 2 MPI processor grid
  32000 atoms
  27723 bonds
  40467 angles
  56829 dihedrals
  1034 impropers
Finding 1-2 1-3 1-4 neighbors ...
 Special bond factors lj:   0          0          0         
 Special bond factors coul: 0          0          0         
  4 = max # of 1-2 neighbors
  12 = max # of 1-3 neighbors
  24 = max # of 1-4 neighbors
  26 = max # of special neighbors
Finding SHAKE clusters ...
  1617 = # of size 2 clusters
  3633 = # of size 3 clusters
  747 = # of size 4 clusters
  4233 = # of frozen angles
PPPM initialization ...
  G vector (1/distance) = 0.248835
  grid = 25 32 32
  stencil order = 5
  estimated absolute RMS force accuracy = 0.0355478
  estimated relative force accuracy = 0.000107051
  using double precision FFTs
  3d grid and FFT values/proc = 13230 6400
Neighbor list info ...
  1 neighbor list requests
  update every 1 steps, delay 5 steps, check yes
  master list distance cutoff = 12
Setting up run ...
Memory usage per processor = 37.5069 Mbytes
---------------- Step        0 ----- CPU =      0.0000 (sec) ----------------
TotEng   =    -25356.2064 KinEng   =     21444.8313 Temp     =       299.0397 
PotEng   =    -46801.0377 E_bond   =      2537.9940 E_angle  =     10921.3742 
E_dihed  =      5211.7865 E_impro  =       213.5116 E_vdwl   =     -2307.8634 
E_coul   =    207025.8927 E_long   =   -270403.7333 Press    =      -142.6035 
Volume   =    307995.0335 
---------------- Step       50 ----- CPU =      9.6463 (sec) ----------------
TotEng   =    -25330.0828 KinEng   =     21501.0029 Temp     =       299.8230 
PotEng   =    -46831.0857 E_bond   =      2471.7004 E_angle  =     10836.4975 
E_dihed  =      5239.6299 E_impro  =       227.1218 E_vdwl   =     -1993.2754 
E_coul   =    206797.6332 E_long   =   -270410.3930 Press    =       237.6701 
Volume   =    308031.5639 
---------------- Step      100 ----- CPU =     19.7912 (sec) ----------------
TotEng   =    -25290.7591 KinEng   =     21592.0117 Temp     =       301.0920 
PotEng   =    -46882.7708 E_bond   =      2567.9807 E_angle  =     10781.9408 
E_dihed  =      5198.7432 E_impro  =       216.7834 E_vdwl   =     -1902.4783 
E_coul   =    206659.2327 E_long   =   -270404.9733 Press    =         6.9961 
Volume   =    308133.9888 
Loop time of 19.7912 on 4 procs (4 MPI x 1 OpenMP) for 100 steps with 32000 atoms

Pair  time (%) = 14.2517 (72.0103)
Bond  time (%) = 0.491081 (2.48131)
Kspce time (%) = 1.98937 (10.0518)
Neigh time (%) = 2.36986 (11.9743)
Comm  time (%) = 0.145501 (0.735177)
Outpt time (%) = 0.000239253 (0.00120888)
Other time (%) = 0.543465 (2.74599)

Nlocal:    8000 ave 8143 max 7933 min
Histogram: 1 2 0 0 0 0 0 0 0 1
Nghost:    22733.5 ave 22769 max 22693 min
Histogram: 1 0 0 0 0 2 0 0 0 1
Neighs:    3.00703e+06 ave 3.0975e+06 max 2.96493e+06 min
Histogram: 1 2 0 0 0 0 0 0 0 1

Total # of neighbors = 12028107
Ave neighs/atom = 375.878
Ave special neighs/atom = 7.43187
Neighbor list builds = 11
Dangerous builds = 0
Application 102542435 resources: utime ~85s, stime ~1s, Rss ~53428, inblocks ~66262, outblocks ~113482

logsize=`wc -c log.lammps | cut -f 1 -d " "`
wc -c log.lammps | cut -f 1 -d " "
if [[ $logsize -ne 0 ]]; then
  grep "Loop time of" log.lammps
  if [[ $? -ne 0 ]]; then
    echo unverified &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status 
  else
    echo verified &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status
  fi
else
  echo unverified &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status
fi
Loop time of 19.7912 on 4 procs (4 MPI x 1 OpenMP) for 100 steps with 32000 atoms

grep "Loop time of" log.lammps | awk '{print "YVALUE=",$4}' | sed 's/ //g'   &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/cputime
grep "Memory" log.lammps | awk '{print "YVALUE=",$6}' | sed 's/ //g'   &gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/memory
  
JOBID=`echo $PBS_JOBID | cut -d "." -f1 `
echo $PBS_JOBID | cut -d "." -f1 

chmod 775 /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/status
rm /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/.running

cat ${JOBID}* &gt;&gt; /scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/test.log
LAMMPS (15 May 2015)
WARNING: OMP_NUM_THREADS environment is not set. (../comm.cpp:89)
  using 1 OpenMP thread(s) per MPI task
# Rhodopsin model

variable	x index 1
variable	y index 1
variable	z index 1

units           real
neigh_modify    delay 5 every 1

atom_style      full
atom_modify	map hash
bond_style      harmonic
angle_style     charmm
dihedral_style  charmm
improper_style  harmonic
pair_style      lj/charmm/coul/long 8.0 10.0
pair_modify     mix arithmetic
kspace_style    pppm 1e-4

read_data       data.rhodo
  orthogonal box = (-27.5 -38.5 -36.3646) to (27.5 38.5 36.3615)
  1 by 2 by 2 MPI processor grid
  reading atoms ...
  32000 atoms
  reading velocities ...
  32000 velocities
  scanning bonds ...
  4 = max bonds/atom
  scanning angles ...
  8 = max angles/atom
  scanning dihedrals ...
  18 = max dihedrals/atom
  scanning impropers ...
  2 = max impropers/atom
  reading bonds ...
  27723 bonds
  reading angles ...
  40467 angles
  reading dihedrals ...
  56829 dihedrals
  reading impropers ...
  1034 impropers
  4 = max # of 1-2 neighbors
  12 = max # of 1-3 neighbors
  24 = max # of 1-4 neighbors
  26 = max # of special neighbors

replicate	$x $y $z
replicate	1 $y $z
replicate	1 1 $z
replicate	1 1 1
  orthogonal box = (-27.5 -38.5 -36.3646) to (27.5 38.5 36.3615)
  1 by 2 by 2 MPI processor grid
  32000 atoms
  27723 bonds
  40467 angles
  56829 dihedrals
  1034 impropers
  4 = max # of 1-2 neighbors
  12 = max # of 1-3 neighbors
  24 = max # of 1-4 neighbors
  26 = max # of special neighbors

fix             1 all shake 0.0001 5 0 m 1.0 a 232
  1617 = # of size 2 clusters
  3633 = # of size 3 clusters
  747 = # of size 4 clusters
  4233 = # of frozen angles
fix             2 all npt temp 300.0 300.0 100.0 		z 0.0 0.0 1000.0 mtk no pchain 0 tchain 1

special_bonds   charmm

thermo          50
thermo_style    multi
timestep        2.0

run		100
PPPM initialization ...
  G vector (1/distance) = 0.248835
  grid = 25 32 32
  stencil order = 5
  estimated absolute RMS force accuracy = 0.0355478
  estimated relative force accuracy = 0.000107051
  using double precision FFTs
  3d grid and FFT values/proc = 13230 6400
Neighbor list info ...
  1 neighbor list requests
  update every 1 steps, delay 5 steps, check yes
  master list distance cutoff = 12
Memory usage per processor = 37.5069 Mbytes
---------------- Step        0 ----- CPU =      0.0000 (sec) ----------------
TotEng   =    -25356.2064 KinEng   =     21444.8313 Temp     =       299.0397 
PotEng   =    -46801.0377 E_bond   =      2537.9940 E_angle  =     10921.3742 
E_dihed  =      5211.7865 E_impro  =       213.5116 E_vdwl   =     -2307.8634 
E_coul   =    207025.8927 E_long   =   -270403.7333 Press    =      -142.6035 
Volume   =    307995.0335 
---------------- Step       50 ----- CPU =      9.6463 (sec) ----------------
TotEng   =    -25330.0828 KinEng   =     21501.0029 Temp     =       299.8230 
PotEng   =    -46831.0857 E_bond   =      2471.7004 E_angle  =     10836.4975 
E_dihed  =      5239.6299 E_impro  =       227.1218 E_vdwl   =     -1993.2754 
E_coul   =    206797.6332 E_long   =   -270410.3930 Press    =       237.6701 
Volume   =    308031.5639 
---------------- Step      100 ----- CPU =     19.7912 (sec) ----------------
TotEng   =    -25290.7591 KinEng   =     21592.0117 Temp     =       301.0920 
PotEng   =    -46882.7708 E_bond   =      2567.9807 E_angle  =     10781.9408 
E_dihed  =      5198.7432 E_impro  =       216.7834 E_vdwl   =     -1902.4783 
E_coul   =    206659.2327 E_long   =   -270404.9733 Press    =         6.9961 
Volume   =    308133.9888 
Loop time of 19.7912 on 4 procs (4 MPI x 1 OpenMP) for 100 steps with 32000 atoms

Pair  time (%) = 14.2517 (72.0103)
Bond  time (%) = 0.491081 (2.48131)
Kspce time (%) = 1.98937 (10.0518)
Neigh time (%) = 2.36986 (11.9743)
Comm  time (%) = 0.145501 (0.735177)
Outpt time (%) = 0.000239253 (0.00120888)
Other time (%) = 0.543465 (2.74599)

Nlocal:    8000 ave 8143 max 7933 min
Histogram: 1 2 0 0 0 0 0 0 0 1
Nghost:    22733.5 ave 22769 max 22693 min
Histogram: 1 0 0 0 0 2 0 0 0 1
Neighs:    3.00703e+06 ave 3.0975e+06 max 2.96493e+06 min
Histogram: 1 2 0 0 0 0 0 0 0 1

Total # of neighbors = 12028107
Ave neighs/atom = 375.878
Ave special neighs/atom = 7.43187
Neighbor list builds = 11
Dangerous builds = 0
Displaying status file:
verified

[SSH] completed
[SSH] exit-status: 0

[workspace] $ /bin/sh -xe /tmp/jenkins7962220737958751490.sh
+ scp BW_REMOTE_2:/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/cputime /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace
+ scp BW_REMOTE_2:/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/memory /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace
Recording plot data
Saving plot series data from: /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace/cputime
Saving plot series data from: /var/lib/jenkins/jobs/LAMMPS-h2ologin4/workspace/memory
Finished: SUCCESS