Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/NAMD-BW/workspace
Checking out a fresh workspace because /var/lib/jenkins/jobs/NAMD-BW/workspace/namd doesn't exist
Cleaning local Directory namd
Checking out https://github.com/reubendb/SWTools-BWCI/trunk/namd at revision HEAD
A .check4newver
A .exceptions
A 2.10
A 2.10/cle5.2_gnu5.1.0
A 2.10/cle5.2_gnu5.1.0/.owners
A 2.10/cle5.2_gnu5.1.0/build-notes
AU 2.10/cle5.2_gnu5.1.0/rebuild
AU 2.10/cle5.2_gnu5.1.0/relink
A 2.10/cle5.2_gnu5.1.0/remodule
AU 2.10/cle5.2_gnu5.1.0/retest
AU 2.10/cle5.2_gnu5.1.0/status
A 2.10/cle5.2_intel15.0.2
A 2.10/cle5.2_intel15.0.2/.owners
A 2.10/cle5.2_intel15.0.2/build-notes
AU 2.10/cle5.2_intel15.0.2/rebuild
AU 2.10/cle5.2_intel15.0.2/relink
A 2.10/cle5.2_intel15.0.2/remodule
AU 2.10/cle5.2_intel15.0.2/retest
AU 2.10/cle5.2_intel15.0.2/status
A description
A support
A versions
At revision 22
No changes for https://github.com/reubendb/SWTools-BWCI/trunk/namd since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins16354541222082730618.sh
+ rsync -az --delete -e ssh /var/lib/jenkins/jobs/NAMD-BW/workspace/namd BW_REMOTE:/scratch/system/bwjenkins/tests/
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null
export SW_CONFIG=$SW_CONFIG
cd $SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swbuildwait
[SSH] executing...
swbuild -s -a namd -v 2.10 -b cle5.2_gnu5.1.0
# clear out old installation to prevent potential libtool chmod
# commands from failing when reinstalled by another person
rm -rf bin lib include man
rm -rf tcl* $NAMD_SRCDIR
#clear out status file since re-making
rm -f status
#-- Build TCL first since NAMD depends on TCL. Do not use other TCL version
tar -xzf /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-src.tar.gz
cd tcl*/unix
#-- Apply patch for TCL to work on Cray XE
patch -p0 < /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-crayxe-tclUnixInit.patch
patching file tclUnixInit.c
./configure CC=gcc --prefix=$SW_BLDDIR --disable-shared
checking whether to use symlinks for manpages... no
checking whether to compress the manpages... no
checking whether to add a package name suffix for the manpages... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dirent.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/wait.h usability... yes
checking sys/wait.h presence... yes
checking for sys/wait.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking if the compiler understands -pipe... yes
checking for building with threads... no (default)
checking for sin... no
checking for main in -lieee... yes
checking for main in -linet... no
checking net/errno.h usability... no
checking net/errno.h presence... no
checking for net/errno.h... no
checking for connect... yes
checking for gethostbyname... yes
checking how to build libraries... static
checking for ranlib... ranlib
checking if 64bit support is requested... no
checking if 64bit Sparc VIS support is requested... no
checking if compiler supports visibility "hidden"... yes
checking if rpath support is requested... yes
checking system version... Linux-3.0.101-0.47.106.59.1.17833.1.PTF-default
checking for dlopen in -ldl... yes
checking for ar... ar
checking for build with symbols... no
checking for required early compiler flags... _LARGEFILE64_SOURCE
checking for 64-bit integer type... using long
checking whether byte ordering is bigendian... no
checking for getcwd... yes
checking for opendir... yes
checking for strtol... yes
checking for waitpid... yes
checking for strerror... yes
checking for getwd... yes
checking for wait3... yes
checking for uname... yes
checking for realpath... yes
checking for getaddrinfo... yes
checking for working getaddrinfo... yes
checking sys/modem.h usability... no
checking sys/modem.h presence... no
checking for sys/modem.h... no
checking termios vs. termio vs. sgtty... termios
checking for fd_set in sys/types... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for gmtime_r... yes
checking for localtime_r... yes
checking for mktime... yes
checking tm_tzadj in struct tm... no
checking tm_gmtoff in struct tm... yes
checking long timezone variable... yes
checking for struct stat.st_blocks... yes
checking for struct stat.st_blksize... yes
checking for blkcnt_t... yes
checking for fstatfs... yes
checking for working memcmp... yes
checking for memmove... yes
checking for strstr... yes
checking proper strstr implementation... ok
checking for strtoul... yes
checking proper strtoul implementation... ok
checking for strtod... yes
checking proper strtod implementation... ok
checking for strtod... (cached) yes
checking for Solaris2.4/Tru64 strtod bugs... ok
checking for mode_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for uid_t in sys/types.h... yes
checking for socklen_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking for opendir... (cached) yes
checking union wait... yes
checking for strncasecmp... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for gettimeofday declaration... present
checking whether char is unsigned... no
checking signed char declarations... yes
checking for a putenv() that copies the buffer... no
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking whether to use nl_langinfo... yes
checking for chflags... no
checking isnan... yes
checking for fts... no
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/filio.h usability... no
checking sys/filio.h presence... no
checking for sys/filio.h... no
checking system version... (cached) Linux-3.0.101-0.47.106.59.1.17833.1.PTF-default
checking FIONBIO vs. O_NONBLOCK for nonblocking I/O... O_NONBLOCK
checking whether to use dll unloading... yes
checking for timezone data... /usr/share/zoneinfo
checking whether to enable DTrace support... no
checking if the C stack grows upwards in memory... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating dltest/Makefile
config.status: creating tclConfig.sh
make
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regcomp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regexec.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regfree.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regerror.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DUSE_TCLALLOC=0 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAsync.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c: In function 'TclEvalObjvInternal':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3659:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3751:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBinary.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCkalloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclClock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdAH.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdIL.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdMZ.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompCmds.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompExpr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDate.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDictObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEncoding.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEnv.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclExecute.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFileName.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclGet.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHash.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHistory.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIndexObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclInterp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIO.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIORChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOGT.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclListObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLiteral.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLoad.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclMain.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNamesp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNotify.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPanic.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclParse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPathObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 \
-DCFG_INSTALL_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_INSTALL_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_INSTALL_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_INSTALL_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_INSTALL_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
-DCFG_RUNTIME_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_RUNTIME_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_RUNTIME_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_RUNTIME_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_RUNTIME_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkgConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPosixStr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPreserve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c: In function 'TclObjInterpProcCore':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1718:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1753:10: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int l;
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1831:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclRegexp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResolve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResult.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclScan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStringObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStrToD.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThread.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadJoin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadStorage.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubLib.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTimer.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTrace.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtf.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclVar.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTomMathInterface.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixTime.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DTCL_LIBRARY=\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\" \
-DTCL_PACKAGE_PATH="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib \"" \
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixThrd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixCompat.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixNotfy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclLoadDl.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bncore.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_reverse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_and.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clamp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_mag.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_count_bits.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_3.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_exch.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_expt_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_grow.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_lshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_neg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_or.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_smap.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_read_radix.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_rshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_shrink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqrt.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toradix_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_unsigned_bin_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_xor.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_zero.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sub.c
rm -f libtclstub8.5.a
ar cr libtclstub8.5.a tclStubLib.o ; ranlib libtclstub8.5.a
rm -f libtcl8.5.a
ar cr libtcl8.5.a regcomp.o regexec.o regfree.o regerror.o tclAlloc.o tclAsync.o tclBasic.o tclBinary.o tclCkalloc.o tclClock.o tclCmdAH.o tclCmdIL.o tclCmdMZ.o tclCompCmds.o tclCompExpr.o tclCompile.o tclConfig.o tclDate.o tclDictObj.o tclEncoding.o tclEnv.o tclEvent.o tclExecute.o tclFCmd.o tclFileName.o tclGet.o tclHash.o tclHistory.o tclIndexObj.o tclInterp.o tclIO.o tclIOCmd.o tclIORChan.o tclIOGT.o tclIOSock.o tclIOUtil.o tclLink.o tclListObj.o tclLiteral.o tclLoad.o tclMain.o tclNamesp.o tclNotify.o tclObj.o tclPanic.o tclParse.o tclPathObj.o tclPipe.o tclPkg.o tclPkgConfig.o tclPosixStr.o tclPreserve.o tclProc.o tclRegexp.o tclResolve.o tclResult.o tclScan.o tclStringObj.o tclStrToD.o tclThread.o tclThreadAlloc.o tclThreadJoin.o tclThreadStorage.o tclStubInit.o tclStubLib.o tclTimer.o tclTrace.o tclUtf.o tclUtil.o tclVar.o tclTomMathInterface.o tclUnixChan.o tclUnixEvent.o tclUnixFCmd.o tclUnixFile.o tclUnixPipe.o tclUnixSock.o tclUnixTime.o tclUnixInit.o tclUnixThrd.o tclUnixCompat.o tclUnixNotfy.o tclLoadDl.o bncore.o bn_reverse.o bn_fast_s_mp_mul_digs.o bn_fast_s_mp_sqr.o bn_mp_add.o bn_mp_and.o bn_mp_add_d.o bn_mp_clamp.o bn_mp_clear.o bn_mp_clear_multi.o bn_mp_cmp.o bn_mp_cmp_d.o bn_mp_cmp_mag.o bn_mp_copy.o bn_mp_count_bits.o bn_mp_div.o bn_mp_div_d.o bn_mp_div_2.o bn_mp_div_2d.o bn_mp_div_3.o bn_mp_exch.o bn_mp_expt_d.o bn_mp_grow.o bn_mp_init.o bn_mp_init_copy.o bn_mp_init_multi.o bn_mp_init_set.o bn_mp_init_size.o bn_mp_karatsuba_mul.o bn_mp_karatsuba_sqr.o bn_mp_lshd.o bn_mp_mod.o bn_mp_mod_2d.o bn_mp_mul.o bn_mp_mul_2.o bn_mp_mul_2d.o bn_mp_mul_d.o bn_mp_neg.o bn_mp_or.o bn_mp_radix_size.o bn_mp_radix_smap.o bn_mp_read_radix.o bn_mp_rshd.o bn_mp_set.o bn_mp_shrink.o bn_mp_sqr.o bn_mp_sqrt.o bn_mp_sub.o bn_mp_sub_d.o bn_mp_to_unsigned_bin.o bn_mp_to_unsigned_bin_n.o bn_mp_toom_mul.o bn_mp_toom_sqr.o bn_mp_toradix_n.o bn_mp_unsigned_bin_size.o bn_mp_xor.o bn_mp_zero.o bn_s_mp_add.o bn_s_mp_mul_digs.o bn_s_mp_sqr.o bn_s_mp_sub.o ; ranlib libtcl8.5.a
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclAppInit.c
gcc -O2 -pipe -Wl,--export-dynamic tclAppInit.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix -ltcl8.5 -ldl -lieee -lm \
-Wl,-rpath,/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -o tclsh
if [ $? -ne 0 ] ; then
echo "TCL make failed"
exit 1
fi
make install
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin
Installing libtcl8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing tclsh as /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin/tclsh8.5
Installing tclConfig.sh to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing libtclstub8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing message catalogs
Creating msgs
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/opt0.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/http1.0
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/encoding
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4/platform
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.5
Installing header files
Installing library files to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5
Installing library http1.0 directory
Installing package http 2.7.5 as a Tcl Module
Installing library opt0.4 directory
Installing package msgcat 1.4.3 as a Tcl Module
Installing package tcltest 2.3.2 as a Tcl Module
Installing package platform 1.0.9 as a Tcl Module
Installing package platform::shell 1.1.4 as a Tcl Module
Installing library encoding directory
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man1
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/mann
Installing and cross-linking top-level (.1) docs
Installing and cross-linking C API (.3) docs
Installing and cross-linking command (.n) docs
if [ $? -ne 0 ] ; then
echo "TCL make install failed"
exit 1
fi
cd $SW_BLDDIR
tar -xzf /sw/sources/namd/${NAMD_VER}/${NAMD_SRCDIR}.tar.gz
cd $NAMD_SRCDIR
tar -xf ${CHARM_SRCDIR}.tar
rm -f ${CHARM_SRCDIR}.tar
cd $CHARM_SRCDIR
#-- Apply patch for charm++ bug triggered to new release of craype 2015-09
# This patch came from https://charm.cs.illinois.edu/redmine/issues/841
cat > fix_gethugepagesize.patch << EOF
diff --git a/src/arch/gni/Makefile.machine b/src/arch/gni/Makefile.machine
index c9652c9..b7a19ad 100644
--- a/src/arch/gni/Makefile.machine
+++ b/src/arch/gni/Makefile.machine
@@ -9,8 +9,5 @@ charm++: hybridAPI
.PHONY: hybridAPI
endif
-\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h \$(L)/cray_tlbhack.o
-
-\$(L)/cray_tlbhack.o: cray_tlbhack.c
- \$(CHARMC) -o \$@ cray_tlbhack.c
+\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h
diff --git a/src/scripts/charmc b/src/scripts/charmc
index 21fb325..88676b4 100755
--- a/src/scripts/charmc
+++ b/src/scripts/charmc
@@ -853,12 +853,6 @@ if [ -n "\$CHARMDEBUG" -a -z "\$SEQUENTIAL" -a -z "\$NATIVE" ]; then
OPTS_CPP="\$OPTS_CPP -O0 -g"
fi
-if [ -z "\$NATIVE" -a -n "\$UGNI_CFLAGS" ]
-then
- linkopt=\`env | grep "HUGETLB[0-9]*[MKG]_POST_LINK_OPTS" 2> /dev/null\`
- test -z "\$linkopt" && POST_LIBRARIES=\`AddList \$POST_LIBRARIES \$CHARMLIB/cray_tlbhack.o\`
-fi
-
PROCESSED_MODULES=""
if [ "\$WERROR" = "1" ]
EOF
patch -p1 < fix_gethugepagesize.patch
patching file src/arch/gni/Makefile.machine
patching file src/scripts/charmc
Hunk #1 succeeded at 842 (offset -11 lines).
./build charm++ gni-crayxc --no-build-shared --with-production
Creating dir: gni-crayxc
Creating dir: gni-crayxc/tmp
Copying src/scripts/Makefile to gni-crayxc/tmp
Soft-linking over bin
Soft-linking over lib
Soft-linking over lib_so
Soft-linking over include
Soft-linking over tmp
Generating gni-crayxc/tmp/conv-mach-pre.sh
Generating gni-crayxc/tmp/conv-mach-opt.h, conv-mach-opt.sh
Performing '/usr/bin/gmake basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in gni-crayxc/tmp
pwd
/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp
find . -type l -exec rm {} \;
rm -rf QuickThreads
rm -rf libs
rm -rf ../bin ; mkdir ../bin
if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \
cp -f ../../src/arch/`cat .vdir | awk -F- '{print $2}'`/unix2nt* ../bin; \
cp -f ../../src/arch/win32/createlink.exe ../bin; \
fi
rm -rf ../lib ; mkdir ../lib
rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso
rm -rf ../examples
rm -rf ../tests
rm -rf ../doc ; ln -s ../doc ../doc
../../src/scripts/gatherflat ../../src/scripts .
./gatherflat ../../src/conv-core .
./gatherflat ../../src/conv-ldb .
./gatherflat ../../src/conv-ccs .
./gatherflat ../../src/conv-perf .
./gatherflat ../../src/ck-core .
./gatherflat ../../src/ck-perf .
./gatherflat ../../src/ck-tune .
./gatherflat ../../src/ck-ldb .
./gatherflat ../../src/ck-com .
./gatherflat ../../src/ck-cp .
./gatherflat ../../src/conv-com .
./gatherflat ../../src/langs/simplemsg .
./gatherflat ../../src/langs/pvmc .
./gatherflat ../../src/langs/bluegene .
./gatherflat ../../src/langs/f90charm .
./gatherflat ../../src/xlatcpm .
./gathertree ../../src/QuickThreads QuickThreads
./gathertree ../../src/libs libs
./gathertree ../../src/arch/util .
./gathertree ../../src/util .
./gathertree ../../src/langs langs
./gathertree ../../src/langs/jade langs/jade
./gathertree ../../src/arch/common .
./gathertree ../../src/arch/`cat .gdir` .
test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new` . || true
./gatherflat ../../src/arch/`cat .vdir` .
./gathertree ../../examples ../examples
./gathertree ../../tests ../tests
rm -f ../bin/dep.pl ; cp dep.pl ../bin/
chmod +x charmc
./system_ln ../tmp/charmc ../bin/
rm -rf ../include ; mkdir ../include
./system_ln ../tmp/conv-*.*h ../include
./system_ln ../tmp/cc-*.*h ../include
./system_ln ../tmp/conv-mach-opt.sh ../include
if [ -x ./special.sh ] ; then ./special.sh ; fi
if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi
touch dirs+sources
/usr/bin/gmake charmxi
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
./configure --disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats
Error checking is disabled
Statistics collection is disabled
Charm tracing is disabled
Charm tracing communication thread is disabled
CharmDebug is disabled
Charm record/replay is disabled
CCS is enabled
Charm control point is disabled
Charm LB user data is disabled
Setting load balancing timer type as 'double'
checking machine name... gni-crayxc
checking "cp command as"... cp -p
checking "C++ compiler as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/pmi/5.0.14/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether C++ compiler works"... "ok"
checking "C++ linker as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/pmi/5.0.14/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether linker works"... "ok"
checking "Native C++ compiler as"... "g++ "
checking "Sequential C++ compiler as"... "g++ "
Setting charm++ envelope refnum field to unsigned short
Configuring support for message priorities of arbitrary size (bitvectors)
checking "whether compiler generates code for 64-bit"... "yes"
checking "whether compiler supports std::alignment_of"... "no"
checking "whether has values.h "... "yes"
checking "whether has stdint.h "... "yes"
checking "whether has malloc.h "... "yes"
checking "whether has alloca.h "... "yes"
checking "whether has regex.h "... "yes"
checking "whether long long works"... "yes"
checking "whether __int64 works"... "no"
checking "whether __int128 (128-bit integer) works"... "yes"
checking "whether __int128_t (128-bit integer) works"... "yes"
checking "whether long double works"... "yes"
checking "whether ucontext has FPU pointer"... "yes"
checking "whether ucontext uses uc_regs"... "no"
checking "whether ucontext has pointer (v_regs) of vector type"... "no"
checking "whether ibverbs ibv_port_attr has link_layer field"... "yes"
checking "whether inline works in C"... "yes"
checking "whether C++ signed char and char differ"... "yes"
checking "whether C++ allows declaration of varsize array"... "yes"
checking "whether typeinfo/typeid works"... "ok"
checking "whether std::iterator_traits is defined"... "ok"
checking "whether std::distance is defined"... "ok"
checking "whether std::inserter is defined"... "ok"
checking "whether std::unordered_map is defined"... "no"
checking "whether anon structs are permitted"... "yes"
checking "whether operator delete can be overloaded in same class"... "ok"
checking "whether offsetof is defined"... "yes"
checking "whether GCC x86 assembly works"... "yes"
checking "whether GCC x86 assembly for atomic increment works"... "yes"
checking "whether GCC IA64 assembly works"... "no"
checking "whether asm eieio assembly works"... "no"
checking "whether __thread (Thread Local Storage) is supported"... "yes"
checking "whether synchronization primitives (__sync_add_and_fetch) works in C"... "yes"
checking "whether synchronization primitives (__sync_synchronize) works in C"... "yes"
checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works in C"... "no"
checking "whether switching TLS register (64-bit) is supported"... "yes"
checking "whether getrusage accepts RUSAGE_THREAD"... "yes"
checking "whether has asctime"... "yes"
checking "whether has log2"... "yes"
checking "whether has sqrtf"... "yes"
checking "whether has fabsf"... "yes"
checking "whether has mkstemp"... "yes"
checking "whether has system"... "yes"
checking "whether has sync()"... "yes"
checking "whether has fsync()"... "yes"
checking "whether has fdatasync()"... "yes"
checking "whether has sbrk"... "yes"
checking "whether has _setjmp/_longjmp"... "yes"
checking "whether has mstats"... "no"
checking "whether has mallinfo"... "yes"
checking "whether has popen"... "yes"
checking "whether has poll"... "yes"
checking "whether has getpagesize"... "yes"
checking "whether has getpid"... "yes"
checking "whether has kill"... "yes"
checking "whether has setpriority"... "yes"
checking "whether to use signal-safe system() "... "no"
checking "whether sched_setaffinity call exists"... "yes"
checking "whether pthread_setaffinity_np call exists"... "yes"
checking "whether pthread_spin_lock exists"... "yes"
checking "whether bindprocessor call exists"... "no"
checking "whether dlopen links without -ldl"... "no"
checking "whether dlopen links with -ldl"... "yes"
checking "whether gethostname call exists"... "yes"
checking "whether getProcAddress works"... "no"
checking "whether has socklen_t"... "yes"
checking "whether getifaddrs call exists"... "yes"
checking "whether the mmap() syscall exists"... "yes"
checking "whether mmap() accepts MAP_ANON"... "yes"
checking "whether mmap() accepts MAP_NORESERVE"... "yes"
checking "whether has get_myaddress"... "yes"
checking "whether has mprotect"... "yes"
checking "whether glibc backtrace works"... "yes"
checking "whether has sleep "... "yes"
checking "whether has usleep "... "yes"
checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "yes"
checking "whether has zlib"... "yes"
checking "whether has elf.h "... "yes"
checking "whether has Multiprocessing.h for Apple "... "no"
checking "whether ntohl is available"... "yes"
checking "whether has libjpeg"... "yes"
checking "whether Python is installed"... "no"
checking "whether PMI_Get_nid exists"... "yes"
checking "whether Cray rca library is available"... "yes"
checking "whether Cray rca_has get_max_dimension"... "yes"
BALANCED_INJECTION test disabled on Aries network
checking "whether can build shared library"... "yes"
checking for sync... sync
checking "F77 compiler as"... "ftn "
checking "whether Fortran 77 compiler works"... "yes"
checking "F90 compiler as"... "ftn "
checking "whether Fortran 90 compiler works"... "yes"
checking subroutine name used by Fortran 90 compiler... ONESCORE
checking Fortran 90 mod name is capital... "no"
checking Fortran 90 mod name extension... "mod"
configure: creating ./config.status
config.status: creating libs/ck-libs/ampi/ampiCC
config.status: creating libs/ck-libs/ampi/ampirun
config.status: creating conv-autoconfig.h
config.status: executing config-cleanup commands
config.status: executing default commands
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-main.o ../../src/xlat-i/xi-main.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-symbol.o ../../src/xlat-i/xi-symbol.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-grammar.tab.o ../../src/xlat-i/xi-grammar.tab.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -DYY_NEVER_INTERACTIVE -c -o xi-scan.o ../../src/xlat-i/xi-scan.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-util.o ../../src/xlat-i/xi-util.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o sdag-globals.o ../../src/xlat-i/sdag/sdag-globals.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CSdagConstruct.o ../../src/xlat-i/sdag/CSdagConstruct.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C
../bin/charmc -host -language c++ -cp ../bin/ -o charmxi xi-main.o xi-symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o CParsedFile.o
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
/usr/bin/gmake headerlinks
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
../bin/charmc -intrinsic -optimize -production ckcallback.ci && touch ckcallback.ci.stamp
../bin/charmc -intrinsic -optimize -production DummyLB.ci && touch DummyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyLB.ci && touch GreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommLB.ci && touch CommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RandCentLB.ci && touch RandCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineLB.ci && touch RefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineCommLB.ci && touch RefineCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RotateLB.ci && touch RotateLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistributedLB.ci && touch DistributedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridLB.ci && touch HybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ComboCentLB.ci && touch ComboCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineSwapLB.ci && touch RefineSwapLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborLB.ci && touch NeighborLB.ci.stamp
../bin/charmc -intrinsic -optimize -production OrbLB.ci && touch OrbLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BlockLB.ci && touch BlockLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyCommLB.ci && touch GreedyCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphPartLB.ci && touch GraphPartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphBFTLB.ci && touch GraphBFTLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommLB.ci && touch GridCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommRefineLB.ci && touch GridCommRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HbmLB.ci && touch HbmLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineKLB.ci && touch RefineKLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareCommLB.ci && touch TempAwareCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TreeMatchLB.ci && touch TreeMatchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyAgentLB.ci && touch GreedyAgentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborCommLB.ci && touch NeighborCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production PhasebyArrayLB.ci && touch PhasebyArrayLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RecBipartLB.ci && touch RecBipartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommAwareRefineLB.ci && touch CommAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production AdaptiveLB.ci && touch AdaptiveLB.ci.stamp
../bin/charmc -intrinsic -optimize -production MetisLB.ci && touch MetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ScotchLB.ci && touch ScotchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TeamLB.ci && touch TeamLB.ci.stamp
../bin/charmc -intrinsic -optimize -production WSLB.ci && touch WSLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridMetisLB.ci && touch GridMetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareGreedyLB.ci && touch TempAwareGreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridSeedLB.ci && touch GridHybridSeedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoCentLB.ci && touch TopoCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridLB.ci && touch GridHybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoLB.ci && touch TopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineTopoLB.ci && touch RefineTopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareRefineLB.ci && touch TempAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmarshall.ci && touch ckmarshall.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarray.ci && touch ckarray.ci.stamp
../bin/charmc -intrinsic -optimize -production cklocation.ci && touch cklocation.ci.stamp
../bin/charmc -intrinsic -optimize -production ckreduction.ci && touch ckreduction.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarrayreductionmgr.ci && touch ckarrayreductionmgr.ci.stamp
../bin/charmc -intrinsic -optimize -production tempo.ci && touch tempo.ci.stamp
../bin/charmc -intrinsic -optimize -production waitqd.ci && touch waitqd.ci.stamp
../bin/charmc -intrinsic -optimize -production ckfutures.ci && touch ckfutures.ci.stamp
../bin/charmc -intrinsic -optimize -production ckcheckpoint.ci && touch ckcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmemcheckpoint.ci && touch ckmemcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production LBDatabase.ci && touch LBDatabase.ci.stamp
../bin/charmc -intrinsic -optimize -production MetaBalancer.ci && touch MetaBalancer.ci.stamp
../bin/charmc -intrinsic -optimize -production CentralLB.ci && touch CentralLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NullLB.ci && touch NullLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BaseLB.ci && touch BaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NborBaseLB.ci && touch NborBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistBaseLB.ci && touch DistBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridBaseLB.ci && touch HybridBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production EveryLB.ci && touch EveryLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommonLBs.ci && touch CommonLBs.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-summary.ci && touch trace-summary.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-projections.ci && touch trace-projections.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-autoPerf.ci && touch trace-autoPerf.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-simple.ci && touch trace-simple.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-controlPoints.ci && touch trace-controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-Tau.ci && touch trace-Tau.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-utilization.ci && touch trace-utilization.ci.stamp
../bin/charmc -intrinsic -optimize -production BlueGene.ci && touch BlueGene.ci.stamp
../bin/charmc -intrinsic -optimize -production ComlibManager.ci && touch ComlibManager.ci.stamp
../bin/charmc -intrinsic -optimize -production controlPoints.ci && touch controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production pathHistory.ci && touch pathHistory.ci.stamp
../bin/charmc -intrinsic -optimize -production mpi-mainmodule.ci && touch mpi-mainmodule.ci.stamp
Soft-linking headers...
for hdr in 3dgridrouter.h AAMLearner.h AAPLearner.h AdaptiveLB.decl.h AdaptiveLB.h BGPTorus.h BGQTorus.h BaseLB.decl.h BaseLB.h BlockLB.decl.h BlockLB.h BlueGene.decl.h BlueGene.h BroadcastStrategy.h CentralLB.decl.h CentralLB.h CentralLBMsg.h ChunkMulticastStrategy.h CkArray.decl.h CkArrayReductionMgr.decl.h CkCallback.decl.h CkCheckpoint.decl.h CkFutures.decl.h CkLocation.decl.h CkMarshall.decl.h CkMemCheckpoint.decl.h CkReduction.decl.h ComboCentLB.decl.h ComboCentLB.h ComlibArrayListener.h ComlibLearner.h ComlibManager.h ComlibSectionInfo.h ComlibStats.h ComlibStrategy.h CommAwareRefineLB.decl.h CommAwareRefineLB.h CommLB.decl.h CommLB.h CommLBHeap.h CommonLBs.decl.h ControlPoints.decl.h DirectMulticastStrategy.h DistBaseLB.decl.h DistBaseLB.h DistributedLB.decl.h DistributedLB.h DummyLB.decl.h DummyLB.h DummyStrategy.h EachToManyMulticastStrategy.h EveryLB.decl.h GraphBFTLB.decl.h GraphBFTLB.h GraphPartLB.decl.h GraphPartLB.h GreedyAgentLB.decl.h GreedyAgentLB.h GreedyCommLB.decl.h GreedyCommLB.h GreedyLB.decl.h GreedyLB.h GridCommLB.decl.h GridCommLB.h GridCommRefineLB.decl.h GridCommRefineLB.h GridHybridLB.decl.h GridHybridLB.h GridHybridSeedLB.decl.h GridHybridSeedLB.h GridMetisLB.decl.h GridMetisLB.h HbmLB.decl.h HbmLB.h HybridBaseLB.decl.h HybridBaseLB.h HybridLB.decl.h HybridLB.h HybridLBMsg.h LBAgent.h LBComm.h LBDBManager.h LBDatabase.decl.h LBDatabase.h LBMachineUtil.h LBOM.h LBObj.h LBProfit.h LBSimulation.h MPIStrategy.h MeshStreamingStrategy.h MetaBalancer.decl.h MetaBalancer.h MetisLB.decl.h MetisLB.h MsgPacker.h MultiRingMulticast.h MulticastStrategy.h NborBaseLB.decl.h NborBaseLB.h NeighborCommLB.decl.h NeighborCommLB.h NeighborLB.decl.h NeighborLB.h NeighborLBMsg.h NodeMulticast.h NullLB.decl.h OneTimeMulticastStrategy.h OrbLB.decl.h OrbLB.h PathHistory.decl.h PhasebyArrayLB.decl.h PhasebyArrayLB.h PipeBroadcastStrategy.h PrioStreaming.h RTH.h RandCentLB.decl.h RandCentLB.h RecBipartLB.decl.h RecBipartLB.h RectMulticastStrategy.h RefineCommLB.decl.h RefineCommLB.h RefineKLB.decl.h RefineKLB.h RefineLB.decl.h RefineLB.h RefineSwapLB.decl.h RefineSwapLB.h RefineTopoLB.decl.h RefineTopoLB.h Refiner.h RefinerApprox.h RefinerComm.h RefinerTemp.h RingMulticastStrategy.h RotateLB.decl.h RotateLB.h SSE-Double.h SSE-Float.h ScotchLB.decl.h ScotchLB.h StreamingStrategy.h TeamLB.decl.h TeamLB.h TempAwareCommLB.decl.h TempAwareCommLB.h TempAwareGreedyLB.decl.h TempAwareGreedyLB.h TempAwareRefineLB.decl.h TempAwareRefineLB.h TopoCentLB.decl.h TopoCentLB.h TopoLB.decl.h TopoLB.h TopoManager.h TraceAutoPerf.decl.h TraceControlPoints.decl.h TraceProjections.decl.h TraceSimple.decl.h TraceSummary.decl.h TraceTau.decl.h TraceUtilization.decl.h TreeMatchLB.decl.h TreeMatchLB.h WSLB.decl.h WSLB.h XTTorus.h arrayRedistributor.h autoPerfAPI.h bgconverse.h bigsim_debug.h bigsim_logs.h bigsim_network.h bigsim_ooc.h bigsim_record.h bigsim_timing.h bitvecset.h blue-conv.h blue.h blue_defs.h blue_impl.h blue_types.h ccs-auth.c ccs-auth.h ccs-client.c ccs-client.h ccs-server.h charm++.h charm-api.h charm.h ck.h ckBIconfig.h ckIgetControl.h ckarray.h ckarrayindex.h ckarrayreductionmgr.h ckbitvector.h ckcallback-ccs.h ckcallback.h ckcausalmlog.h ckcheckpoint.h ckcomplex.h ckdirect.h ckdll.h ckevacuation.h ckfutures.h ckgraph.h ckgraphTemp.h ckhashtable.h ckheap.h ckimage.h cklists.h ckliststring.h cklocation.h cklocrec.h ckmemcheckpoint.h ckmessage.h ckmessagelogging.h ckmigratable.h ckobjQ.h ckobjid.h ckreduction.h cksection.h cksequence.h cksequence_factory.h cksequence_internal.h ckset.h ckstatistics.h ckstream.h cktiming.h ckvector3d.h cmidirect.h cmidirectmanytomany.h cmimemcpy.h cmipool.h cmiqueue.h cmitls.h comlib.decl.h comlib.h controlPoints.h controlPointsf.h conv-autoconfig.h conv-ccs.h conv-common.h conv-config.h conv-config.sh conv-cpath.h conv-cpm.h conv-lists.h conv-mach.h conv-mach.sh conv-qd.h conv-random.h conv-trace.h convcomlib.h convcomlibmanager.h convcomlibstrategy.h converse.h cp_effects.h cpthreads.h crc32.h debug-charm.h debug-conv++.h debug-conv.h dummyconversestrategy.h elements.h envelope-path.h envelope.h graph.h graphrouter.h gridrouter.h hypercuberouter.h hypercubetopology.h init.h lbdb++.h lbdb.h manager.h memory-isomalloc.h mempool.h middle-blue.h middle-conv.h middle.h mpi-interoperate.h mpi_main.decl.h msgq.h objid.h pathHistory.h persistent.h petable.h pipebroadcastconverse.h pipelinestrategy.h prefixrouter.h pup.h pup_c.h pup_cmialloc.h pup_mpi.h pup_paged.h pup_stl.h pup_toNetwork.h pup_toNetwork4.h pupf.h pvm3.h pvmc.h qd.h queueing.h rand48_replacement.h random_sequence.h readonly.h register.h router.h routerstrategy.h sdag.h shared-alloc.h simd.h simplemsg.h sm.h sockRoutines.c sockRoutines.h stats.h strided_sequence.h tempo.decl.h tempo.h topology.h trace-autoPerf.h trace-bluegene.h trace-common.h trace-controlPoints.h trace-projections.h trace-simple.h trace.h treerouter.h vector2d.h waitqd.decl.h waitqd.h ; do test ! -f "../include/`basename $hdr`" && ./system_ln "../tmp/$hdr" ../include ; done
touch headerlinks
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
touch basics
Performing '/usr/bin/gmake charm++ OPTS=-optimize -production QUIET=' in gni-crayxc/tmp
../bin/charmc -optimize -production -I. -c -o DummyLB.o DummyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDummyLB.a DummyLB.o
ar: creating ../lib/libmoduleDummyLB.a
../bin/charmc -optimize -production -I. -c -o GreedyLB.o GreedyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyLB.a GreedyLB.o
ar: creating ../lib/libmoduleGreedyLB.a
../bin/charmc -optimize -production -I. -c -o CommLB.o CommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommLB.a CommLB.o
ar: creating ../lib/libmoduleCommLB.a
../bin/charmc -optimize -production -I. -c -o RandCentLB.o RandCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRandCentLB.a RandCentLB.o
ar: creating ../lib/libmoduleRandCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineLB.o RefineLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineLB.a RefineLB.o
ar: creating ../lib/libmoduleRefineLB.a
../bin/charmc -optimize -production -I. -c -o RefineCommLB.o RefineCommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineCommLB.a RefineCommLB.o
ar: creating ../lib/libmoduleRefineCommLB.a
cp -f libmoduleRefineCommLB.dep ../lib/
../bin/charmc -optimize -production -I. -c -o RotateLB.o RotateLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRotateLB.a RotateLB.o
ar: creating ../lib/libmoduleRotateLB.a
../bin/charmc -optimize -production -I. -c -o DistributedLB.o DistributedLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDistributedLB.a DistributedLB.o
ar: creating ../lib/libmoduleDistributedLB.a
../bin/charmc -optimize -production -I. -c -o HybridLB.o HybridLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleHybridLB.a HybridLB.o
ar: creating ../lib/libmoduleHybridLB.a
../bin/charmc -optimize -production -I. -c -o ComboCentLB.o ComboCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleComboCentLB.a ComboCentLB.o
ar: creating ../lib/libmoduleComboCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineSwapLB.o RefineSwapLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineSwapLB.a RefineSwapLB.o
ar: creating ../lib/libmoduleRefineSwapLB.a
../bin/charmc -optimize -production -I. -c -o NeighborLB.o NeighborLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleNeighborLB.a NeighborLB.o
ar: creating ../lib/libmoduleNeighborLB.a
../bin/charmc -optimize -production -I. -c -o OrbLB.o OrbLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleOrbLB.a OrbLB.o
ar: creating ../lib/libmoduleOrbLB.a
../bin/charmc -optimize -production -I. -c -o BlockLB.o BlockLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleBlockLB.a BlockLB.o
ar: creating ../lib/libmoduleBlockLB.a
../bin/charmc -optimize -production -I. -c -o GreedyCommLB.o GreedyCommLB.C
../bin/charmc -optimize -production -I. -c -o manager.o manager.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyCommLB.a GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleGreedyCommLB.a
../bin/charmc -optimize -production -I. -c -o CommonLBs.o CommonLBs.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommonLBs.a CommonLBs.o DummyLB.o GreedyLB.o CommLB.o RandCentLB.o RefineLB.o RefineCommLB.o RotateLB.o DistributedLB.o HybridLB.o ComboCentLB.o RefineSwapLB.o NeighborLB.o OrbLB.o BlockLB.o GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleCommonLBs.a
/usr/bin/gmake -C libs/ck-libs/completion
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../../../../bin/charmc -optimize -production -c completion.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o completion.o completion.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmodulecompletion.a completion.o
ar: creating ../../../../lib/libmodulecompletion.a
/bin/cp completion.decl.h ../../../../include
/bin/cp completion.def.h ../../../../include
/bin/cp completion.h ../../../../include
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../bin/charmc -seq -DCMK_NOT_USE_CONVERSE=1 -o sockRoutines-seq.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o trace-common.o trace-common.C
../bin/charmc -optimize -production -I. -c -o tracec.o tracec.C
../bin/charmc -optimize -production -I. -c -o tracef.o tracef.C
../bin/charmc -optimize -production -I. -c -o init.o init.C
../bin/charmc -optimize -production -I. -c -o register.o register.C
../bin/charmc -optimize -production -I. -c -o qd.o qd.C
../bin/charmc -optimize -production -I. -c -o ck.o ck.C
../bin/charmc -optimize -production -I. -c -o msgalloc.o msgalloc.C
../bin/charmc -optimize -production -I. -c -o ckfutures.o ckfutures.C
../bin/charmc -optimize -production -I. -c -o ckIgetControl.o ckIgetControl.C
../bin/charmc -optimize -production -I. -c -o debug-message.o debug-message.C
../bin/charmc -optimize -production -I. -c -o debug-charm.o debug-charm.C
../bin/charmc -optimize -production -I. -c -o ckcallback.o ckcallback.C
../bin/charmc -optimize -production -I. -c -o cklocation.o cklocation.C
../bin/charmc -optimize -production -I. -c -o ckarray.o ckarray.C
../bin/charmc -optimize -production -I. -c -o ckreduction.o ckreduction.C
../bin/charmc -optimize -production -I. -c -o ckarrayreductionmgr.o ckarrayreductionmgr.C
../bin/charmc -optimize -production -I. -c -o tempo.o tempo.C
../bin/charmc -optimize -production -I. -c -o waitqd.o waitqd.C
../bin/charmc -optimize -production -I. -c -o LBDatabase.o LBDatabase.C
../bin/charmc -optimize -production -I. -c -o MetaBalancer.o MetaBalancer.C
../bin/charmc -optimize -production -I. -c -o lbdb.o lbdb.C
../bin/charmc -optimize -production -I. -c -o lbdbf.o lbdbf.C
../bin/charmc -optimize -production -I. -c -o ckobjQ.o ckobjQ.C
../bin/charmc -optimize -production -I. -c -o LBAgent.o LBAgent.C
../bin/charmc -optimize -production -I. -c -o LBProfit.o LBProfit.C
../bin/charmc -optimize -production -I. -c -o ckcheckpoint.o ckcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckmemcheckpoint.o ckmemcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C
../bin/charmc -optimize -production -I. -c -o ckmessagelogging.o ckmessagelogging.C
../bin/charmc -optimize -production -I. -c -o ckcausalmlog.o ckcausalmlog.C
../bin/charmc -optimize -production -I. -c -o ckobjid.o ckobjid.C
../bin/charmc -optimize -production -I. -c -o LBDBManager.o LBDBManager.C
../bin/charmc -optimize -production -I. -c -o LBComm.o LBComm.C
../bin/charmc -optimize -production -I. -c -o LBObj.o LBObj.C
../bin/charmc -optimize -production -I. -c -o LBMachineUtil.o LBMachineUtil.C
../bin/charmc -optimize -production -I. -c -o CentralPredictor.o CentralPredictor.C
../bin/charmc -optimize -production -I. -c -o BaseLB.o BaseLB.C
../bin/charmc -optimize -production -I. -c -o CentralLB.o CentralLB.C
../bin/charmc -optimize -production -I. -c -o HybridBaseLB.o HybridBaseLB.C
../bin/charmc -optimize -production -I. -c -o NborBaseLB.o NborBaseLB.C
../bin/charmc -optimize -production -I. -c -o DistBaseLB.o DistBaseLB.C
../bin/charmc -optimize -production -I. -c -o ckgraphTemp.o ckgraphTemp.C
../bin/charmc -optimize -production -I. -c -o ckgraph.o ckgraph.C
../bin/charmc -optimize -production -I. -c -o LButil.o LButil.C
../bin/charmc -optimize -production -I. -c -o RefinerTemp.o RefinerTemp.C
../bin/charmc -optimize -production -I. -c -o Refiner.o Refiner.C
../bin/charmc -optimize -production -I. -c -o RefinerApprox.o RefinerApprox.C
../bin/charmc -optimize -production -I. -c -o RefinerComm.o RefinerComm.C
../bin/charmc -optimize -production -I. -c -o bitvecset.o bitvecset.c
../bin/charmc -optimize -production -I. -c -o ckset.o ckset.C
../bin/charmc -optimize -production -I. -c -o ckheap.o ckheap.C
../bin/charmc -optimize -production -I. -c -o CommLBHeap.o CommLBHeap.C
../bin/charmc -optimize -production -I. -c -o NullLB.o NullLB.C
../bin/charmc -optimize -production -I. -c -o LBSimulation.o LBSimulation.C
../bin/charmc -optimize -production -I. -c -o ComlibModuleInterface.o ComlibModuleInterface.C
../bin/charmc -optimize -production -I. -c -o modifyScheduler.o modifyScheduler.C
../bin/charmc -optimize -production -I. -c -o charmProjections.o charmProjections.C
../bin/charmc -optimize -production -I. -c -o cktiming.o cktiming.C
../bin/charmc -optimize -production -I. -c -o ckbitvector.o ckbitvector.C
../bin/charmc -optimize -production -I. -c -o pathHistory.o pathHistory.C
../bin/charmc -optimize -production -I. -c -o controlPoints.o controlPoints.C
../bin/charmc -optimize -production -I. -c -o arrayRedistributor.o arrayRedistributor.C
../bin/charmc -optimize -production -I. -c -o cp_effects.o cp_effects.C
../bin/charmc -optimize -production -I. -c -o trace-controlPoints.o trace-controlPoints.C
../bin/charmc -optimize -production -I. -c -o mpi-interoperate.o mpi-interoperate.C
../bin/charmc -optimize -production -o ../lib/libck.a trace-common.o tracec.o tracef.o init.o register.o qd.o ck.o msgalloc.o ckfutures.o ckIgetControl.o debug-message.o debug-charm.o ckcallback.o cklocation.o ckarray.o ckreduction.o ckarrayreductionmgr.o tempo.o waitqd.o LBDatabase.o MetaBalancer.o lbdb.o lbdbf.o ckobjQ.o LBAgent.o LBProfit.o ckcheckpoint.o ckmemcheckpoint.o ckevacuation.o ckmessagelogging.o ckcausalmlog.o ckobjid.o LBDBManager.o LBComm.o LBObj.o LBMachineUtil.o CentralPredictor.o BaseLB.o CentralLB.o HybridBaseLB.o NborBaseLB.o DistBaseLB.o ckgraphTemp.o ckgraph.o LButil.o RefinerTemp.o Refiner.o RefinerApprox.o RefinerComm.o bitvecset.o ckset.o ckheap.o CommLBHeap.o NullLB.o LBSimulation.o ComlibModuleInterface.o modifyScheduler.o charmProjections.o cktiming.o ckbitvector.o pathHistory.o controlPoints.o arrayRedistributor.o cp_effects.o trace-controlPoints.o mpi-interoperate.o
ar: creating ../lib/libck.a
../bin/charmc -optimize -production -I. -c -o convcore.o convcore.c
convcore.c: In function 'ConverseCommonInit':
convcore.c:3563:3: warning: implicit declaration of function 'CmiPoolAllocInit' [-Wimplicit-function-declaration]
CmiPoolAllocInit(30);
^
convcore.c: In function 'ConverseCommonExit':
convcore.c:3657:3: warning: implicit declaration of function 'seedBalancerExit' [-Wimplicit-function-declaration]
seedBalancerExit();
^
convcore.c:3658:3: warning: implicit declaration of function 'EmergencyExit' [-Wimplicit-function-declaration]
EmergencyExit();
^
../bin/charmc -optimize -production -I. -c -o conv-conds.o conv-conds.c
../bin/charmc -optimize -production -I. -c -o queueing.o queueing.C
../bin/charmc -optimize -production -I. -c -o msgmgr.o msgmgr.c
../bin/charmc -optimize -production -I. -c -o cpm.o cpm.c
../bin/charmc -optimize -production -I. -c -o cpthreads.o cpthreads.c
../bin/charmc -optimize -production -I. -c -o futures.o futures.c
../bin/charmc -optimize -production -I. -c -o cldb.o cldb.c
../bin/charmc -optimize -production -I. -c -o topology.o topology.C
../bin/charmc -optimize -production -I. -c -o random.o random.c
../bin/charmc -optimize -production -I. -c -o debug-conv.o debug-conv.c
debug-conv.c: In function 'CpdSearchLeaks':
debug-conv.c:88:3: warning: implicit declaration of function 'check_memory_leaks' [-Wimplicit-function-declaration]
check_memory_leaks(info);
^
../bin/charmc -optimize -production -I. -c -o debug-conv++.o debug-conv++.C
../bin/charmc -optimize -production -I. -c -o generate.o generate.c
../bin/charmc -optimize -production -I. -c -o edgelist.o edgelist.c
../bin/charmc -optimize -production -I. -c -o conv-ccs.o conv-ccs.c
conv-ccs.c: In function 'CcsSendReply':
conv-ccs.c:175:3: warning: implicit declaration of function 'CcsReply' [-Wimplicit-function-declaration]
CcsReply(CpvAccess(ccsReq),replyLen,replyData);
^
../bin/charmc -optimize -production -I. -c -o ccs-builtins.o ccs-builtins.C
../bin/charmc -optimize -production -I. -c -o middle-ccs.o middle-ccs.C
../bin/charmc -optimize -production -I. -c -o traceCore.o traceCore.C
../bin/charmc -optimize -production -I. -c -o traceCoreCommon.o traceCoreCommon.C
../bin/charmc -optimize -production -I. -c -o converseProjections.o converseProjections.C
../bin/charmc -optimize -production -I. -c -o machineProjections.o machineProjections.C
../bin/charmc -optimize -production -I. -c -o quiescence.o quiescence.c
../bin/charmc -optimize -production -I. -c -o isomalloc.o isomalloc.c
../bin/charmc -optimize -production -I. -c -o mem-arena.o mem-arena.c
../bin/charmc -optimize -production -I. -c -o conv-counter.o conv-counter.c
../bin/charmc -optimize -production -I. -c -o global-nop.o global-nop.c
../bin/charmc -optimize -production -I. -c -o cmipool.o cmipool.c
../bin/charmc -optimize -production -I. -c -o cpuaffinity.o cpuaffinity.c
../bin/charmc -optimize -production -I. -c -o cputopology.o cputopology.C
../bin/charmc -optimize -production -I. -c -o cmitls.o cmitls.c
../bin/charmc -optimize -production -I. -c -o memoryaffinity.o memoryaffinity.c
./commitid.sh
Copying VERSION.new = v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969 over VERSION =
echo "const char * const CmiCommitID = \"`cat VERSION`\";" > commitid.c
../bin/charmc -optimize -production -I. -c -o commitid.o commitid.c
../bin/charmc -optimize -production -I. -c -o sdag.o sdag.C
../bin/charmc -optimize -production -I. -c -o conv-interoperate.o conv-interoperate.c
../bin/charmc -optimize -production -o ../lib/libconv-core.a convcore.o conv-conds.o queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o topology.o random.o debug-conv.o debug-conv++.o generate.o edgelist.o conv-ccs.o ccs-builtins.o middle-ccs.o traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o quiescence.o isomalloc.o mem-arena.o conv-counter.o global-nop.o cmipool.o cpuaffinity.o cputopology.o cmitls.o memoryaffinity.o commitid.o sdag.o conv-interoperate.o
ar: creating ../lib/libconv-core.a
../bin/charmc -optimize -production -o machine.o -DFOR_CPLUS=1 machine.c
../bin/charmc -optimize -production -o ../lib/libconv-cplus-y.a machine.o
ar: creating ../lib/libconv-cplus-y.a
../bin/charmc -optimize -production -o ../lib/libconv-cplus-n.a -DFOR_CPLUS=0 machine.c
ar: creating ../lib/libconv-cplus-n.a
../bin/charmc -optimize -production -I. -c -o pup_util.o pup_util.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork.o pup_toNetwork.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork4.o pup_toNetwork4.C
../bin/charmc -optimize -production -I. -c -o pup_xlater.o pup_xlater.C
../bin/charmc -optimize -production -I. -c -o pup_c.o pup_c.C
../bin/charmc -optimize -production -I. -c -o pup_paged.o pup_paged.C
../bin/charmc -optimize -production -I. -c -o pup_cmialloc.o pup_cmialloc.C
../bin/charmc -optimize -production -I. -c -o ckimage.o ckimage.C
../bin/charmc -optimize -production -I. -c -o ckdll.o ckdll.C
../bin/charmc -optimize -production -I. -c -o ckhashtable.o ckhashtable.C
../bin/charmc -optimize -production -I. -c -o sockRoutines.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o conv-lists.o conv-lists.C
../bin/charmc -optimize -production -I. -c -o RTH.o RTH.C
../bin/charmc -optimize -production -I. -c -o persist-comm.o persist-comm.c
../bin/charmc -optimize -production -I. -c -o mempool.o mempool.c
../bin/charmc -optimize -production -I. -c -o graph.o graph.c
../bin/charmc -optimize -production -I. -c -o TopoManager.o TopoManager.C
../bin/charmc -optimize -production -I. -c -o CrayNid.o CrayNid.c
../bin/charmc -optimize -production -I. -c -o BGQTorus.o BGQTorus.C
../bin/charmc -optimize -production -I. -c -o crc32.o crc32.c
../bin/charmc -optimize -production -I. -c -o lz4.o lz4.c
lz4.c: In function 'lz4_wrapper_decompress':
lz4.c:871:21: warning: implicit declaration of function 'CmiAbort' [-Wimplicit-function-declaration]
if(sinkint < 0) CmiAbort("decode fails\n");
^
../bin/charmc -optimize -production -I. -c -o partitioning_strategies.o partitioning_strategies.C
../bin/charmc -optimize -production -I. -c -o hilbert.o hilbert.C
../bin/charmc -optimize -production -o ../lib/libconv-util.a pup_util.o pup_toNetwork.o pup_toNetwork4.o pup_xlater.o pup_c.o pup_paged.o pup_cmialloc.o ckimage.o ckdll.o ckhashtable.o sockRoutines.o conv-lists.o RTH.o persist-comm.o mempool.o graph.o TopoManager.o CrayNid.o BGQTorus.o crc32.o lz4.o partitioning_strategies.o hilbert.o
ar: creating ../lib/libconv-util.a
../bin/charmc -optimize -production -c pup_f.f90 && ../bin/charmc -optimize -production -cpmod ../include pupmod.M || touch pup_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a
ar: creating ../lib/libconv-utilf.a
../bin/charmc -optimize -production -o ../lib/libldb-rand.o cldb.rand.c
../bin/charmc -optimize -production -o ../lib/libldb-spray.o cldb.spray.c
../bin/charmc -optimize -production -o ../lib/libldb-workstealing.o cldb.workstealing.c
cldb.workstealing.c: In function 'CldAskLoadHandler':
cldb.workstealing.c:114:11: warning: implicit declaration of function 'CldMultipleSendPrio' [-Wimplicit-function-declaration]
CldMultipleSendPrio(receiver, sendLoad, rank, 0);
^
../bin/charmc -optimize -production -o ../lib/libldb-neighbor.o cldb.neighbor.c
../bin/charmc -optimize -production -o ../lib/libldb-none.o cldb.none.c
../bin/charmc -optimize -production -o ../lib/libldb-test.o cldb.test.c
../bin/charmc -optimize -production -o ../lib/libldb-bluegene.o cldb.bluegene.c
../bin/charmc -optimize -production -I. -c -o trace-converse.o trace-converse.c
../bin/charmc -optimize -production -o ../lib/libtrace-converse.a trace-converse.o
ar: creating ../lib/libtrace-converse.a
../bin/charmc -optimize -production -o tracef_f.o -c tracef_f.f90 && ../bin/charmc -optimize -production -cpmod ../include tracemod.M || touch tracef_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libtracef_f.a tracef_f.o || touch ../lib/libtracef_f.a
ar: creating ../lib/libtracef_f.a
../bin/charmc -optimize -production -I. -o ../lib/libmemory-default.o -DCMK_MEMORY_BUILD_DEFAULT memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os.o -DCMK_MEMORY_BUILD_OS memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-gnu.o -DCMK_MEMORY_BUILD_GNU memory.c || touch ../lib/libmemory-gnu.o
In file included from memory-gnu.c:82:0,
from memory.c:544:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory.c:544:0:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-verbose.o -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-verbose.o
In file included from memory-gnu.c:82:0,
from memory-verbose.c:11,
from memory.c:555:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-verbose.c:11:0,
from memory.c:555:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-paranoid.o -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-paranoid.o
In file included from memory-gnu.c:82:0,
from memory-paranoid.c:258,
from memory.c:559:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-paranoid.c:258:0,
from memory.c:559:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-leak.o -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-leak.o
In file included from memory-gnu.c:82:0,
from memory-leak.c:21,
from memory.c:563:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-leak.c:21:0,
from memory.c:563:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-isomalloc.o -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-isomalloc.o
In file included from memory-gnu.c:82:0,
from memory-isomalloc.c:14,
from memory.c:571:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-isomalloc.c:14:0,
from memory.c:571:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-verbose.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-os-verbose.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-isomalloc.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-os-isomalloc.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-leak.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-os-leak.o
../bin/charmc -optimize -production -o ../lib/libmemory-os-paranoid.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-os-paranoid.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-lock.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK memory.c || touch ../lib/libmemory-os-lock.o
memory.c:527:0: warning: "MEM_LOCK_AROUND" redefined
#define MEM_LOCK_AROUND(code) code
^
In file included from memory.c:261:0:
memory-lock.c:3:0: note: this is the location of the previous definition
#define MEM_LOCK_AROUND(code) \
^
../bin/charmc -optimize -production -o ../lib/libmemory-os-wrapper.o memory-os-wrapper.C || touch ../lib/libmemory-os-wrapper.o
( /usr/bin/gmake -C QuickThreads clean )
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h libqt.a libstp.a meas.o stp.o qt.o
rm -f qtmdb.s qtmds.s qtmdc.o qtmdb.o qtmds.o run
rm -f Makefile
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
( cd QuickThreads;./configure )
Running configure on generic64
( /usr/bin/gmake -C QuickThreads qt OPTS='-optimize -production -Wno-error' ) || ( echo "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" && false )
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h
../system_ln md/setjmp_d.h qtmd.h
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qt.o qt.c
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qtmds.o md/setjmp64.c
md/setjmp64.c: In function 'qt_args_1':
md/setjmp64.c:20:33: warning: implicit declaration of function 'alloca' [-Wimplicit-function-declaration]
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:56:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)rjb, push_buf((void *)jb));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c:60:3: warning: implicit declaration of function 'write' [-Wimplicit-function-declaration]
write(2,"Never get here 2.\n",18);
^
md/setjmp64.c: In function 'qt_args':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:73:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c: In function 'qt_block':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:92:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:93:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c: In function 'qt_abort':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:105:3: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:106:11: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
CHARMINC=..; . ../conv-config.sh; \
../../bin/charmc -seq -I. -shared -optimize -production -Wno-error -o libqt.$CMK_SHARED_SUF qt.o qtmds.o
Warning: building shared library is skipped, possibly due to not supported, check configuration files.
../../bin/charmc -seq -I. -optimize -production -Wno-error -o libqt.a qt.o qtmds.o
ar: creating libqt.a
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
cp -f QuickThreads/libqt.a ../lib/libckqt.a
(CHARMINC=.; . ./conv-config.sh; \
test -d ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so/libckqt.$CMK_SHARED_SUF)
cp: cannot stat `QuickThreads/libqt.so': No such file or directory
gmake: [QUICK_THREADS] Error 1 (ignored)
touch QUICK_THREADS
../bin/charmc -optimize -production -o ../lib/libthreads-default.o -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads -I. threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-default-tls.o -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads -I. threads.c 2> /dev/null || touch ../lib/libthreads-default-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt.o -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-qt-tls.o -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-qt-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-context.o -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-tls.o -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-context-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext.o -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-tls.o -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-tls.o
threads.c: In function 'CtgInstallTLS':
threads.c:485:3: warning: implicit declaration of function 'switchTLS' [-Wimplicit-function-declaration]
switchTLS((tlsseg_t *)cur, newtls);
^
threads.c: In function 'CthBaseInit':
threads.c:537:3: warning: implicit declaration of function 'currentTLS' [-Wimplicit-function-declaration]
currentTLS(&_ctgTLS);
^
threads.c: In function 'CthCreateInner':
threads.c:1772:3: warning: implicit declaration of function 'allocNewTLSSeg' [-Wimplicit-function-declaration]
allocNewTLSSeg(&B(result)->tlsseg, result);
^
../bin/charmc -optimize -production -o ../lib/libthreads-pthreads.o -DCMK_THREADS_BUILD_PTHREADS=1 -IQuickThreads threads.c || touch ../lib/libthreads-pthreads.o
../bin/charmc -optimize -production -o ../lib/libthreads-fibers.o -DCMK_THREADS_BUILD_FIBERS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-fibers.o
../bin/charmc -optimize -production -o ../lib/libthreads-stackcopy.o -DCMK_THREADS_BUILD_STACKCOPY=1 -IQuickThreads threads.c || touch ../lib/libthreads-stackcopy.o
../bin/charmc -optimize -production -o ../lib/libthreads-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads threads.c || touch ../lib/libthreads-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c || touch ../lib/libthreads-qt-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-memoryalias.o
../bin/charmc -optimize -production -DCMK_NOT_USE_CONVERSE=1 ccs-client.c
../bin/charmc -optimize -production -o ../lib/libccs-client.a ccs-client.o
ar: creating ../lib/libccs-client.a
../bin/charmc -optimize -production -I. -c -o custom_partitioner.o custom_partitioner.C
../bin/charmc -optimize -production -I. -c -o set_partition_params.o set_partition_params.c
../bin/charmc -optimize -production -o ../lib/libconv-partition.a custom_partitioner.o set_partition_params.o
ar: creating ../lib/libconv-partition.a
if [ -f charmrun ] ; then ( cp -f charmrun ../bin ) ; fi
../bin/charmc -optimize -production -c global-elfgot.C -o ../lib/libglobal-swap.o || touch ../lib/libglobal-swap.o
../bin/charmc -optimize -production -c global-elfcopy.C -o ../lib/libglobal-copy.o || touch ../lib/libglobal-copy.o
../bin/charmc -optimize -production -c loadsym.c -o ../lib/loadsym.o || touch ../lib/loadsym.o
../bin/charmc -host conv-cpm.c
conv-cpm.flex:56:1: warning: return type defaults to 'int' [-Wimplicit-int]
yywrap(){ return(1); }
^
conv-cpm.flex:458:1: warning: return type defaults to 'int' [-Wimplicit-int]
main(int argc, char **argv)
^
../bin/charmc -host -language c -o conv-cpm -cp ../bin/ conv-cpm.o
../bin/charmc -optimize -production -c -I. charmf.C
../bin/charmc -optimize -production -c charmmod.f90 || touch charmmod.o
../bin/charmc -optimize -production -cpmod ../include charm.M
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libckf.a charmf.o charmmod.o || touch ../lib/libckf.a
ar: creating ../lib/libckf.a
../bin/charmc -optimize -production -I. -c -o main.o main.C
../bin/charmc -optimize -production -o ../lib/libckmain.a main.o
ar: creating ../lib/libckmain.a
/usr/bin/gmake -C libs/ck-libs/NDMeshStreamer
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
../../../../bin/charmc -optimize -production -c NDMeshStreamer.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o NDMeshStreamer.o NDMeshStreamer.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleNDMeshStreamer.a NDMeshStreamer.o
ar: creating ../../../../lib/libmoduleNDMeshStreamer.a
/bin/cp libmoduleNDMeshStreamer.dep ../../../../lib
/bin/cp NDMeshStreamer.decl.h ../../../../include
/bin/cp NDMeshStreamer.def.h ../../../../include
/bin/cp NDMeshStreamer.h ../../../../include
/bin/cp VirtualRouter.h ../../../../include
/bin/cp DataItemTypes.h ../../../../include
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
/usr/bin/gmake -C libs/ck-libs/multicast
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
../../../../bin/charmc -optimize -production -c ckmulticast.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o ckmulticast.o ckmulticast.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkMulticast.a ckmulticast.o
ar: creating ../../../../lib/libmoduleCkMulticast.a
/bin/cp CkMulticast.decl.h ../../../../include
/bin/cp CkMulticast.def.h ../../../../include
/bin/cp ckmulticast.h ../../../../include
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
/usr/bin/gmake -C libs/ck-libs/pythonCCS
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \
if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional OPTS='-optimize -production ' || exit 1); fi)
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
/usr/bin/gmake -C libs/ck-libs/io
gmake[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../../../../bin/charmc -optimize -production -c ckio.ci
touch ckio.ci.stamp
cp ckio.h CkIO.decl.h CkIO.def.h CkIO_impl.decl.h CkIO_impl.def.h ../../../../include/
touch headers
../../../../bin/charmc -optimize -production -c ckio.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkIO.a ckio.o
ar: creating ../../../../lib/libmoduleCkIO.a
gmake[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../bin/charmc -optimize -production -I. -c -o MPIStrategy.o MPIStrategy.C
../bin/charmc -optimize -production -I. -c -o StreamingStrategy.o StreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o DummyStrategy.o DummyStrategy.C
../bin/charmc -optimize -production -I. -c -o NodeMulticast.o NodeMulticast.C
../bin/charmc -optimize -production -I. -c -o ChunkMulticastStrategy.o ChunkMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o OneTimeMulticastStrategy.o OneTimeMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o EachToManyMulticastStrategy.o EachToManyMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibSectionInfo.o ComlibSectionInfo.C
../bin/charmc -optimize -production -I. -c -o AAPLearner.o AAPLearner.C
../bin/charmc -optimize -production -I. -c -o ComlibStats.o ComlibStats.C
../bin/charmc -optimize -production -I. -c -o AAMLearner.o AAMLearner.C
../bin/charmc -optimize -production -I. -c -o MsgPacker.o MsgPacker.C
../bin/charmc -optimize -production -I. -c -o MulticastStrategy.o MulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o DirectMulticastStrategy.o DirectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o RingMulticastStrategy.o RingMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o MultiRingMulticast.o MultiRingMulticast.C
../bin/charmc -optimize -production -I. -c -o PipeBroadcastStrategy.o PipeBroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o MeshStreamingStrategy.o MeshStreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o PrioStreaming.o PrioStreaming.C
../bin/charmc -optimize -production -I. -c -o BroadcastStrategy.o BroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o RectMulticastStrategy.o RectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibstrategy.o convcomlibstrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibManager.o ComlibManager.C
../bin/charmc -optimize -production -I. -c -o ComlibStrategy.o ComlibStrategy.C
../bin/charmc -optimize -production -I. -c -o gridrouter.o gridrouter.C
../bin/charmc -optimize -production -I. -c -o hypercuberouter.o hypercuberouter.C
../bin/charmc -optimize -production -I. -c -o treerouter.o treerouter.C
../bin/charmc -optimize -production -I. -c -o petable.o petable.C
../bin/charmc -optimize -production -I. -c -o 3dgridrouter.o 3dgridrouter.C
../bin/charmc -optimize -production -I. -c -o graphrouter.o graphrouter.C
../bin/charmc -optimize -production -I. -c -o hypercubetopology.o hypercubetopology.C
../bin/charmc -optimize -production -I. -c -o routerstrategy.o routerstrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibmanager.o convcomlibmanager.C
../bin/charmc -optimize -production -I. -c -o pipebroadcastconverse.o pipebroadcastconverse.C
../bin/charmc -optimize -production -I. -c -o pipelinestrategy.o pipelinestrategy.C
../bin/charmc -optimize -production -I. -c -o prefixrouter.o prefixrouter.C
../bin/charmc -optimize -production -o ../lib/libmodulecomlib.a MPIStrategy.o StreamingStrategy.o DummyStrategy.o NodeMulticast.o ChunkMulticastStrategy.o OneTimeMulticastStrategy.o EachToManyMulticastStrategy.o ComlibSectionInfo.o AAPLearner.o ComlibStats.o AAMLearner.o MsgPacker.o MulticastStrategy.o DirectMulticastStrategy.o RingMulticastStrategy.o MultiRingMulticast.o PipeBroadcastStrategy.o MeshStreamingStrategy.o PrioStreaming.o BroadcastStrategy.o RectMulticastStrategy.o convcomlibstrategy.o ComlibManager.o ComlibStrategy.o gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libmodulecomlib.a
cp -f ../lib/libmodulecomlib.a ../lib/libmodulecommlib.a
../bin/charmc -optimize -production -o ../lib/libconvcom.a gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libconvcom.a
../bin/charmc -optimize -production -I. -c -o mpi-mainmodule.o mpi-mainmodule.C
cp mpi-mainmodule.o ../lib
touch charm++
-------------------------------------------------
charm++ built successfully.
Next, try out a sample program like gni-crayxc/tests/charm++/simplearrayhello
cd ${SW_BLDDIR}/${NAMD_SRCDIR}
rm -rf CRAY-XT-g++
./config CRAY-XT-g++ --with-tcl --tcl-prefix $SW_BLDDIR \
--with-fftw3 --fftw-prefix $FFTW3_DIR \
--charm-base ${SW_BLDDIR}/${NAMD_SRCDIR}/${CHARM_SRCDIR} \
--charm-arch gni-crayxc
Selected arch file arch/CRAY-XT-g++.arch contains:
NAMD_ARCH = CRAY-XT
CHARMARCH = mpi-crayxt
#
# The GNU compilers produce significantly faster NAMD binaries than PGI.
#
# You must run the following to switch CC/cc to the GNU compiler
# environment before building either Charm++ or NAMD:
#
# module swap PrgEnv-pgi PrgEnv-gnu
#
# Users of psfgen might also need to do 'module remove acml' in order for
# the the psfgen compilation to succeed.
#
CXX = CC -DNOHOSTNAME -DNO_GETPWUID
CXXOPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
CC = cc
COPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
#
# ensure that required modules are loaded
#
$(info $(NAMD_PLATFORM))
loaded_modules := $(subst :, ,$(LOADEDMODULES))
module := $(filter rca/%,$(loaded_modules))
ifeq (,$(module))
$(error module rca is not loaded)
else
$(info found module $(module))
endif
module := $(filter PrgEnv-gnu/%,$(loaded_modules))
ifeq (,$(module))
$(error module PrgEnv-gnu is not loaded)
else
$(info found module $(module))
endif
Creating directory: CRAY-XT-g++
Creating link: .. to .rootdir
Writing build options to CRAY-XT-g++/Make.config
Linking Makefile
Linking Make.depends
Linking src directory
Linking plugins directory
Linking psfgen directory
Generated CRAY-XT-g++/Make.config contains the following:
CHARMBASE = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1
include .rootdir/arch/CRAY-XT-g++.arch
CHARMARCH = gni-crayxc
CHARM = $(CHARMBASE)/$(CHARMARCH)
NAMD_PLATFORM = $(NAMD_ARCH)-ugni
include .rootdir/arch/$(NAMD_ARCH).base
include .rootdir/arch/$(NAMD_ARCH).tcl
include .rootdir/arch/$(NAMD_ARCH).fftw3
TCLDIR = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0
FFTDIR = /opt/cray/fftw/3.3.4.10/interlagos
You are ready to run make in directory CRAY-XT-g++ now.
#-- specifying CC/cc causes segfault
#--charm-arch mpi-crayxc --cxx CC --cc cc
cd CRAY-XT-g++
make veryclean
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
rm -rf ptrepository Templates.DB SunWS_cache obj inc
rm -f namd2 psfgen sortreplicas flipdcd flipbinpdb charmrun
make
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
if [ ! -d inc ]; then mkdir -p inc; fi
if [ ! -f inc/.exists ]; then touch inc/.exists; fi
if [ ! -d obj ]; then mkdir -p obj; fi
if [ ! -f obj/.exists ]; then touch obj/.exists; fi
cp src/Node.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Node.ci
rm -f inc/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
cp src/PatchMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/PatchMgr.ci
rm -f inc/PatchMgr.ci
mv PatchMgr.def.h inc
mv PatchMgr.decl.h inc
cp src/ComputeMoaMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMoaMgr.ci
rm -f inc/ComputeMoaMgr.ci
mv ComputeMoaMgr.def.h inc
mv ComputeMoaMgr.decl.h inc
cp src/ComputeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMgr.ci
rm -f inc/ComputeMgr.ci
mv ComputeMgr.def.h inc
mv ComputeMgr.decl.h inc
cp src/WorkDistrib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/WorkDistrib.ci
rm -f inc/WorkDistrib.ci
mv WorkDistrib.def.h inc
mv WorkDistrib.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMoa.o -c src/ComputeMoa.C
cp src/ComputeMsmMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmMgr.ci
rm -f inc/ComputeMsmMgr.ci
mv ComputeMsmMgr.def.h inc
mv ComputeMsmMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsm.o -c src/ComputeMsm.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C
cp src/ComputeMsmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmSerialMgr.ci
rm -f inc/ComputeMsmSerialMgr.ci
mv ComputeMsmSerialMgr.def.h inc
mv ComputeMsmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C
cp src/ComputeFmmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeFmmSerialMgr.ci
rm -f inc/ComputeFmmSerialMgr.ci
mv ComputeFmmSerialMgr.def.h inc
mv ComputeFmmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm.o -c src/msm.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng.o -c src/msm_longrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_setup.o -c src/msm_setup.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng.o -c src/msm_shortrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/wkfutils.o -c src/wkfutils.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/common.o -c src/common.C
src/common.C: In function 'void NAMD_err(const char*)':
src/common.C:100:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'int NAMD_file_exists(const char*)':
src/common.C:137:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'void NAMD_backup_file(const char*, const char*)':
src/common.C:166:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdlib.o -c src/dcdlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/erf.o -c src/erf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fitrms.o -c src/fitrms.C
cp src/main.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/main.ci
Charmxi> 11: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented.
rm -f inc/main.ci
mv main.def.h inc
mv main.decl.h inc
cp src/ReductionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ReductionMgr.ci
rm -f inc/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
cp src/ProxyMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ProxyMgr.ci
rm -f inc/ProxyMgr.ci
mv ProxyMgr.def.h inc
mv ProxyMgr.decl.h inc
cp src/LdbCoordinator.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/LdbCoordinator.ci
rm -f inc/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
cp src/NamdCentLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdCentLB.ci
rm -f inc/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
cp src/NamdNborLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdNborLB.ci
rm -f inc/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
cp src/NamdHybridLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdHybridLB.ci
rm -f inc/NamdHybridLB.ci
mv NamdHybridLB.def.h inc
mv NamdHybridLB.decl.h inc
cp src/NamdDummyLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdDummyLB.ci
rm -f inc/NamdDummyLB.ci
mv NamdDummyLB.def.h inc
mv NamdDummyLB.decl.h inc
cp src/ComputePmeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputePmeMgr.ci
rm -f inc/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
cp src/OptPme.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/OptPme.ci
rm -f inc/OptPme.ci
mv OptPmeMgr.def.h inc
mv OptPmeMgr.decl.h inc
cp src/fftlib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/fftlib.ci
rm -f inc/fftlib.ci
mv PmeFFTLib.def.h inc
mv PmeFFTLib.decl.h inc
cp src/ComputeExtMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeExtMgr.ci
rm -f inc/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
cp src/ComputeGBISserMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGBISserMgr.ci
rm -f inc/ComputeGBISserMgr.ci
mv ComputeGBISserMgr.def.h inc
mv ComputeGBISserMgr.decl.h inc
cp src/CollectionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMgr.ci
rm -f inc/CollectionMgr.ci
mv CollectionMgr.def.h inc
mv CollectionMgr.decl.h inc
cp src/CollectionMaster.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMaster.ci
rm -f inc/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
cp src/BroadcastMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/BroadcastMgr.ci
rm -f inc/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
cp src/Sync.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Sync.ci
rm -f inc/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
cp src/ParallelIOMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ParallelIOMgr.ci
rm -f inc/ParallelIOMgr.ci
mv ParallelIOMgr.def.h inc
mv ParallelIOMgr.decl.h inc
cp src/DataExchanger.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/DataExchanger.ci
rm -f inc/DataExchanger.ci
mv DataExchanger.def.h inc
mv DataExchanger.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/main.o -c src/main.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/mainfunc.o -c src/mainfunc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/memusage.o -c src/memusage.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/strlib.o -c src/strlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgSeven.o -c src/AlgSeven.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgRecBisection.o -c src/AlgRecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgNbor.o -c src/AlgNbor.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AtomMap.o -c src/AtomMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BackEnd.o -c src/BackEnd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastClient.o -c src/BroadcastClient.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMaster.o -c src/CollectionMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMgr.o -c src/CollectionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Communicate.o -c src/Communicate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Compute.o -c src/Compute.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAngles.o -c src/ComputeAngles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAniso.o -c src/ComputeAniso.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeBonds.o -c src/ComputeBonds.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForce.o -c src/ComputeConsForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPME.o -c src/ComputeDPME.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEField.o -c src/ComputeEField.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEwald.o -c src/ComputeEwald.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeExt.o -c src/ComputeExt.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBISser.o -c src/ComputeGBISser.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBIS.o -c src/ComputeGBIS.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeLCPO.o -c src/ComputeLCPO.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeImpropers.o -c src/ComputeImpropers.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGridForce.o -c src/ComputeGridForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMap.o -c src/ComputeMap.C
src/ComputeMap.C: In member function 'void ComputeMap::printComputeMap()':
src/ComputeMap.C:232:7: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
fname = "computeMap.orig";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMgr.o -c src/ComputeMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C
In file included from src/ComputeNonbondedMICKernelBase2.h:218:0,
from src/ComputeNonbondedMICKernelBase.h:1555,
from src/ComputeNonbondedMICKernel.C:2645:
src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space
pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatch.o -c src/ComputePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatchPair.o -c src/ComputePatchPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePme.o -c src/ComputePme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPme.o -c src/OptPme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeRestraints.o -c src/ComputeRestraints.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeStir.o -c src/ComputeStir.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeTclBC.o -c src/ComputeTclBC.C
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)':
src/ComputeTclBC.C:145:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C:156:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:166:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:184:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:196:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:236:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:241:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:272:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:320:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:332:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:337:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:349:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:354:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:378:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/ComputeTclBC.C:384:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:398:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:404:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeThole.o -c src/ComputeThole.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ConfigList.o -c src/ConfigList.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Controller.o -c src/Controller.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ccsinterface.o -c src/ccsinterface.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataStream.o -c src/DataStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DumpBench.o -c src/DumpBench.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C
src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:205:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);};
^
src/FreeEnergyRestrain.C:213:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
src/FreeEnergyRestrain.C:218:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);}
^
src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:247:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);}
^
src/FreeEnergyRestrain.C:251:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fstream_namd.o -c src/fstream_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMaster.o -c src/GlobalMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:44:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:58:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"atom not found",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:74:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:100:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:150:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:163:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:193:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:265:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:307:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:365:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:410:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:429:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:437:72: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvar.o -c src/colvar.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvaratoms.o -c src/colvaratoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias.o -c src/colvarbias.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_abf.o -c src/colvarbias_abf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_alb.o -c src/colvarbias_alb.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_meta.o -c src/colvarbias_meta.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp.o -c src/colvarcomp.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvargrid.o -c src/colvargrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarmodule.o -c src/colvarmodule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarparse.o -c src/colvarparse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarscript.o -c src/colvarscript.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvartypes.o -c src/colvartypes.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarvalue.o -c src/colvarvalue.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GridForceGrid.o -c src/GridForceGrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GromacsTopFile.o -c src/GromacsTopFile.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/heap.o -c src/heap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/HomePatch.o -c src/HomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/IMDOutput.o -c src/IMDOutput.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/InfoStream.o -c src/InfoStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LdbCoordinator.o -c src/LdbCoordinator.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LJTable.o -c src/LJTable.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Measure.o -c src/Measure.C
src/Measure.C: In function 'int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/Measure.C:114:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MGridforceParams.o -c src/MGridforceParams.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MStream.o -c src/MStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule.o -c src/Molecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule2.o -c src/Molecule2.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GoMolecule.o -c src/GoMolecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdCentLB.o -c src/NamdCentLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdNborLB.o -c src/NamdNborLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdHybridLB.o -c src/NamdHybridLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdDummyLB.o -c src/NamdDummyLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdState.o -c src/NamdState.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdOneTools.o -c src/NamdOneTools.C
cp src/ComputeGridForceMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGridForceMgr.ci
rm -f inc/ComputeGridForceMgr.ci
mv ComputeGridForceMgr.def.h inc
mv ComputeGridForceMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Node.o -c src/Node.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Output.o -c src/Output.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Parameters.o -c src/Parameters.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParseOptions.o -c src/ParseOptions.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Patch.o -c src/Patch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMgr.o -c src/PatchMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMap.o -c src/PatchMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDB.o -c src/PDB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDBData.o -c src/PDBData.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeKSpace.o -c src/PmeKSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeRealSpace.o -c src/PmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyMgr.o -c src/ProxyMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyPatch.o -c src/ProxyPatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Rebalancer.o -c src/Rebalancer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RecBisection.o -c src/RecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ReductionMgr.o -c src/ReductionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineOnly.o -c src/RefineOnly.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineTorusLB.o -c src/RefineTorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ScriptTcl.o -c src/ScriptTcl.C
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:165:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:174:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:183:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:192:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:201:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:211:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:240:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:253:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: source",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:274:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:287:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:291:75: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:296:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:302:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:345:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:349:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C:354:61: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:382:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:386:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:392:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:429:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:505:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C:520:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:530:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:557:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:565:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:570:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:580:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:588:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:592:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C:596:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:600:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:610:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:618:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:628:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:634:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:646:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:655:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value too long",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:674:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:691:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:708:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:712:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:721:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not norepeat",TCL_VOLATILE);
^
src/ScriptTcl.C:731:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:736:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:740:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:766:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:774:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:779:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:783:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:808:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C:820:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:839:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:847:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"syntax is 'move <id> to|by {<x> <y> <z>}'",TCL_VOLATILE);
^
src/ScriptTcl.C:857:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:885:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:889:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:894:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"file name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:907:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not withforces or onlyforces",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:946:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:973:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:978:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C:990:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE);
^
src/ScriptTcl.C:1002:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1015:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1020:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1066:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1071:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1088:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1113:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1127:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1140:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1174:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sequencer.o -c src/Sequencer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Set.o -c src/Set.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Settle.o -c src/Settle.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SimParameters.o -c src/SimParameters.C
src/SimParameters.C: In member function 'void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)':
src/SimParameters.C:5384:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case CUBIC: approx_str = "C1 CUBIC"; break;
^
src/SimParameters.C:5385:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC: approx_str = "C1 QUINTIC"; break;
^
src/SimParameters.C:5386:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC2: approx_str = "C2 QUINTIC"; break;
^
src/SimParameters.C:5387:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC: approx_str = "C1 SEPTIC"; break;
^
src/SimParameters.C:5388:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC3: approx_str = "C3 SEPTIC"; break;
^
src/SimParameters.C:5389:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC: approx_str = "C1 NONIC"; break;
^
src/SimParameters.C:5390:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC4: approx_str = "C4 NONIC"; break;
^
src/SimParameters.C:5391:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case C1HERMITE:approx_str = "C1 HERMITE"; break;
^
src/SimParameters.C:5392:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: approx_str = "UNKNOWN"; break;
^
src/SimParameters.C:5395:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR2: split_str = "C2 TAYLOR"; break;
^
src/SimParameters.C:5396:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR3: split_str = "C3 TAYLOR"; break;
^
src/SimParameters.C:5397:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR4: split_str = "C4 TAYLOR"; break;
^
src/SimParameters.C:5398:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR5: split_str = "C5 TAYLOR"; break;
^
src/SimParameters.C:5399:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR6: split_str = "C6 TAYLOR"; break;
^
src/SimParameters.C:5400:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR7: split_str = "C7 TAYLOR"; break;
^
src/SimParameters.C:5401:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR8: split_str = "C8 TAYLOR"; break;
^
src/SimParameters.C:5402:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: split_str = "UNKNOWN"; break;
^
In file included from src/SimParameters.h:21:0,
from src/GridForceGrid.h:14,
from src/Molecule.h:31,
from src/ComputeNonbondedUtil.h:16,
from src/SimParameters.C:21:
src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)':
src/MGridforceParams.h:18:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
#define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams"
^
src/SimParameters.C:5637:25: note: in expansion of macro 'MGRIDFORCEPARAMS_DEFAULTKEY'
char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY;
^
src/SimParameters.C: In member function 'void SimParameters::print_mgrid_params()':
src/SimParameters.C:6054:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char *qcol_msg = "Use atom charge";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SortAtoms.o -c src/SortAtoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sync.o -c src/Sync.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TclCommands.o -c src/TclCommands.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TorusLB.o -c src/TorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/WorkDistrib.o -c src/WorkDistrib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pub3dfft.o -c src/pub3dfft.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/vmdsock.o -c src/vmdsock.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/parm.o -c src/parm.C
src/parm.C: In member function 'int parm::readparm(char*)':
src/parm.C:184:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TITLE"))
^
src/parm.C:194:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"POINTERS"))
^
src/parm.C:318:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ATOM_NAME"))
^
src/parm.C:332:28: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"CHARGE"))
^
src/parm.C:350:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"MASS"))
^
src/parm.C:368:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOM_TYPE_INDEX"))
^
src/parm.C:389:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NUMBER_EXCLUDED_ATOMS"))
^
src/parm.C:410:43: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NONBONDED_PARM_INDEX"))
^
src/parm.C:431:35: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"RESIDUE_LABEL"))
^
src/parm.C:443:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"RESIDUE_POINTER"))
^
src/parm.C:465:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_FORCE_CONSTANT"))
^
src/parm.C:483:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_EQUIL_VALUE"))
^
src/parm.C:501:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_FORCE_CONSTANT"))
^
src/parm.C:519:39: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_EQUIL_VALUE"))
^
src/parm.C:537:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT"))
^
src/parm.C:555:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PERIODICITY"))
^
src/parm.C:573:36: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PHASE"))
^
src/parm.C:591:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"SOLTY"))
^
src/parm.C:610:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_ACOEF"))
^
src/parm.C:629:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_BCOEF"))
^
src/parm.C:650:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_INC_HYDROGEN"))
^
src/parm.C:682:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_WITHOUT_HYDROGEN"))
^
src/parm.C:715:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_INC_HYDROGEN"))
^
src/parm.C:750:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN"))
^
src/parm.C:786:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_INC_HYDROGEN"))
^
src/parm.C:823:49: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN"))
^
src/parm.C:855:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"EXCLUDED_ATOMS_LIST"))
^
src/parm.C:876:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_ACOEF"))
^
src/parm.C:894:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_BCOEF"))
^
src/parm.C:912:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBCUT"))
^
src/parm.C:933:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"AMBER_ATOM_TYPE"))
^
src/parm.C:945:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TREE_CHAIN_CLASSIFICATION"))
^
src/parm.C:957:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"JOIN_ARRAY"))
^
src/parm.C:980:29: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"IROTAT"))
^
src/parm.C:1009:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"SOLVENT_POINTERS"))
^
src/parm.C:1034:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOMS_PER_MOLECULE"))
^
src/parm.C:1050:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOX_DIMENSIONS"))
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/imd.o -c src/imd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CompressPsf.o -c src/CompressPsf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PluginIOMgr.o -c src/PluginIOMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataExchanger.o -c src/DataExchanger.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c
rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"bwjenkins\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/buildinfo.o -c obj/buildinfo.C
const char *namd_build_date = "Wed Dec 22 04:13:42 CST 2021";
const char *namd_build_user = "bwjenkins";
const char *namd_build_machine = "h2ologin3";
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc -verbose -ld++-option \
'-I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer ' \
"-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast" -language charm++ \
obj/buildinfo.o \
obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o \
\
\
\
\
\
-L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl \
-L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -lfftw3f \
obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \
\
\
-lm -o namd2
Verbose mode set
Adding file obj/buildinfo.o...
Adding file obj/ComputeMoa.o...
Adding file obj/ComputeMsm.o...
Adding file obj/ComputeMsmMsa.o...
Adding file obj/ComputeMsmSerial.o...
Adding file obj/ComputeFmmSerial.o...
Adding file obj/msm.o...
Adding file obj/msm_longrng.o...
Adding file obj/msm_longrng_sprec.o...
Adding file obj/msm_setup.o...
Adding file obj/msm_shortrng.o...
Adding file obj/msm_shortrng_sprec.o...
Adding file obj/wkfutils.o...
Adding file obj/common.o...
Adding file obj/dcdlib.o...
Adding file obj/erf.o...
Adding file obj/fitrms.o...
Adding file obj/main.o...
Adding file obj/mainfunc.o...
Adding file obj/memusage.o...
Adding file obj/strlib.o...
Adding file obj/AlgSeven.o...
Adding file obj/AlgRecBisection.o...
Adding file obj/AlgNbor.o...
Adding file obj/AtomMap.o...
Adding file obj/BackEnd.o...
Adding file obj/BroadcastMgr.o...
Adding file obj/BroadcastClient.o...
Adding file obj/CollectionMaster.o...
Adding file obj/CollectionMgr.o...
Adding file obj/Communicate.o...
Adding file obj/Compute.o...
Adding file obj/ComputeAngles.o...
Adding file obj/ComputeAniso.o...
Adding file obj/ComputeBonds.o...
Adding file obj/ComputeConsForce.o...
Adding file obj/ComputeConsForceMsgs.o...
Adding file obj/ComputeCrossterms.o...
Adding file obj/ComputeCylindricalBC.o...
Adding file obj/ComputeDihedrals.o...
Adding file obj/ComputeDPME.o...
Adding file obj/ComputeDPMEMsgs.o...
Adding file obj/ComputeDPMTA.o...
Adding file obj/ComputeEField.o...
Adding file obj/ComputeEwald.o...
Adding file obj/ComputeExt.o...
Adding file obj/ComputeGBISser.o...
Adding file obj/ComputeGBIS.o...
Adding file obj/ComputeGromacsPair.o...
Adding file obj/ComputeLCPO.o...
Adding file obj/ComputeFullDirect.o...
Adding file obj/ComputeHomePatch.o...
Adding file obj/ComputeHomePatches.o...
Adding file obj/ComputeImpropers.o...
Adding file obj/ComputeGlobal.o...
Adding file obj/ComputeGlobalMsgs.o...
Adding file obj/ComputeGridForce.o...
Adding file obj/ComputeMap.o...
Adding file obj/ComputeMgr.o...
Adding file obj/ComputeNonbondedSelf.o...
Adding file obj/ComputeNonbondedPair.o...
Adding file obj/ComputeNonbondedUtil.o...
Adding file obj/ComputeNonbondedStd.o...
Adding file obj/ComputeNonbondedFEP.o...
Adding file obj/ComputeNonbondedGo.o...
Adding file obj/ComputeNonbondedTI.o...
Adding file obj/ComputeNonbondedLES.o...
Adding file obj/ComputeNonbondedPProf.o...
Adding file obj/ComputeNonbondedTabEnergies.o...
Adding file obj/ComputeNonbondedCUDA.o...
Adding file obj/ComputeNonbondedCUDAExcl.o...
Adding file obj/ComputeNonbondedMIC.o...
Adding file obj/ComputeNonbondedMICKernel.o...
Adding file obj/ComputePatch.o...
Adding file obj/ComputePatchPair.o...
Adding file obj/ComputePme.o...
Adding file obj/OptPme.o...
Adding file obj/OptPmeRealSpace.o...
Adding file obj/ComputeRestraints.o...
Adding file obj/ComputeSphericalBC.o...
Adding file obj/ComputeStir.o...
Adding file obj/ComputeTclBC.o...
Adding file obj/ComputeThole.o...
Adding file obj/ConfigList.o...
Adding file obj/Controller.o...
Adding file obj/ccsinterface.o...
Adding file obj/DataStream.o...
Adding file obj/DumpBench.o...
Adding file obj/FreeEnergyAssert.o...
Adding file obj/FreeEnergyGroup.o...
Adding file obj/FreeEnergyLambda.o...
Adding file obj/FreeEnergyLambdMgr.o...
Adding file obj/FreeEnergyParse.o...
Adding file obj/FreeEnergyRestrain.o...
Adding file obj/FreeEnergyRMgr.o...
Adding file obj/FreeEnergyVector.o...
Adding file obj/fstream_namd.o...
Adding file obj/GlobalMaster.o...
Adding file obj/GlobalMasterServer.o...
Adding file obj/GlobalMasterTest.o...
Adding file obj/GlobalMasterIMD.o...
Adding file obj/GlobalMasterTcl.o...
Adding file obj/GlobalMasterSMD.o...
Adding file obj/GlobalMasterTMD.o...
Adding file obj/Matrix4Symmetry.o...
Adding file obj/GlobalMasterSymmetry.o...
Adding file obj/GlobalMasterFreeEnergy.o...
Adding file obj/GlobalMasterEasy.o...
Adding file obj/GlobalMasterMisc.o...
Adding file obj/colvar.o...
Adding file obj/colvaratoms.o...
Adding file obj/colvarbias.o...
Adding file obj/colvarbias_abf.o...
Adding file obj/colvarbias_alb.o...
Adding file obj/colvarbias_meta.o...
Adding file obj/colvarbias_restraint.o...
Adding file obj/colvarcomp.o...
Adding file obj/colvarcomp_angles.o...
Adding file obj/colvarcomp_coordnums.o...
Adding file obj/colvarcomp_distances.o...
Adding file obj/colvarcomp_protein.o...
Adding file obj/colvarcomp_rotations.o...
Adding file obj/colvargrid.o...
Adding file obj/colvarmodule.o...
Adding file obj/colvarparse.o...
Adding file obj/colvarproxy_namd.o...
Adding file obj/colvarscript.o...
Adding file obj/colvartypes.o...
Adding file obj/colvarvalue.o...
Adding file obj/GridForceGrid.o...
Adding file obj/GromacsTopFile.o...
Adding file obj/heap.o...
Adding file obj/HomePatch.o...
Adding file obj/IMDOutput.o...
Adding file obj/InfoStream.o...
Adding file obj/LdbCoordinator.o...
Adding file obj/LJTable.o...
Adding file obj/Measure.o...
Adding file obj/MGridforceParams.o...
Adding file obj/MStream.o...
Adding file obj/MigrateAtomsMsg.o...
Adding file obj/Molecule.o...
Adding file obj/Molecule2.o...
Adding file obj/GoMolecule.o...
Adding file obj/NamdCentLB.o...
Adding file obj/NamdNborLB.o...
Adding file obj/NamdHybridLB.o...
Adding file obj/NamdDummyLB.o...
Adding file obj/NamdState.o...
Adding file obj/NamdOneTools.o...
Adding file obj/Node.o...
Adding file obj/Output.o...
Adding file obj/Parameters.o...
Adding file obj/ParseOptions.o...
Adding file obj/Patch.o...
Adding file obj/PatchMgr.o...
Adding file obj/PatchMap.o...
Adding file obj/PDB.o...
Adding file obj/PDBData.o...
Adding file obj/PmeKSpace.o...
Adding file obj/PmeRealSpace.o...
Adding file obj/ProcessorPrivate.o...
Adding file obj/ProxyMgr.o...
Adding file obj/ProxyPatch.o...
Adding file obj/Rebalancer.o...
Adding file obj/RecBisection.o...
Adding file obj/ReductionMgr.o...
Adding file obj/RefineOnly.o...
Adding file obj/RefineTorusLB.o...
Adding file obj/ScriptTcl.o...
Adding file obj/Sequencer.o...
Adding file obj/Set.o...
Adding file obj/Settle.o...
Adding file obj/SimParameters.o...
Adding file obj/SortAtoms.o...
Adding file obj/Sync.o...
Adding file obj/TclCommands.o...
Adding file obj/TorusLB.o...
Adding file obj/WorkDistrib.o...
Adding file obj/pub3dfft.o...
Adding file obj/vmdsock.o...
Adding file obj/parm.o...
Adding file obj/imd.o...
Adding file obj/CompressPsf.o...
Adding file obj/PluginIOMgr.o...
Adding file obj/DataExchanger.o...
Adding file obj/ParallelIOMgr.o...
Adding file obj/dcdplugin.o...
Adding file obj/jsplugin.o...
Adding file obj/namdbinplugin.o...
Adding file obj/pdbplugin.o...
Adding file obj/psfplugin.o...
OpenMP support not enabled
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete ------------
Adding registration for module NeighborLB
Adding registration for module HybridLB
Adding registration for module RefineLB
Adding registration for module GreedyLB
Adding registration for module CkMulticast
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/pmi/5.0.14/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -U_FORTIFY_SOURCE -c moduleinit32330.C -o moduleinit32330.o
charmc> All libraries are: -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit32330.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/pmi/5.0.14/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -rdynamic -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -o namd2 -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit32330.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing rm -f charmrun
charmc: Executing cp -p /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
rm -f moduleinit32330.C moduleinit32330.o
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_main.o -c sb/src/tcl_main.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_file.o -c sb/src/charmm_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/extract_alias.o -c sb/src/extract_alias.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hash.o -c sb/src/hash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hasharray.o -c sb/src/hasharray.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/memarena.o -c sb/src/memarena.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file.o -c sb/src/pdb_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file.o -c sb/src/psf_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_defs.o -c sb/src/topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol.o -c sb/src/topo_mol.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/stringhash.o -c sb/src/stringhash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl -lm
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/sortreplicas.o -c src/sortreplicas.c
src/sortreplicas.c: In function 'main':
src/sortreplicas.c:52:5: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/sortreplicas.c:52:5: warning: incompatible implicit declaration of built-in function 'exit'
src/sortreplicas.c:52:5: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:55:18: warning: implicit declaration of function 'atoi' [-Wimplicit-function-declaration]
num_replicas = atoi(argv[2]);
^
src/sortreplicas.c:85:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:85:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:92:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:92:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:102:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:102:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:110:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:110:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:131:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:131:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:138:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:138:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:146:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:146:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:172:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:172:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:178:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:178:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:188:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:188:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:193:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:193:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:219:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:219:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:225:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:225:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:259:3: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration]
free(frame.coords);
^
src/sortreplicas.c:259:3: warning: incompatible implicit declaration of built-in function 'free'
src/sortreplicas.c:259:3: note: include '<stdlib.h>' or provide a declaration of 'free'
src/sortreplicas.c:281:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/sortreplicas.c:281:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o sortreplicas obj/sortreplicas.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -lm
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipdcd src/flipdcd.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \
chmod +x flipdcd
src/flipdcd.c: In function 'main':
src/flipdcd.c:42:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipdcd.c:42:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipdcd.c:42:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipdcd.c:47:9: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration]
if ((strncmp(argv[argcount],"-S",2) == 0) || (strncmp(argv[argcount],"-s",2) == 0)){
^
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipbinpdb src/flipbinpdb.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \
chmod +x flipbinpdb
src/flipbinpdb.c: In function 'main':
src/flipbinpdb.c:30:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipbinpdb.c:30:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipbinpdb.c:30:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:35:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:35:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:40:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:40:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:47:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:47:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:53:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:53:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:64:1: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/flipbinpdb.c:64:1: note: include '<stdlib.h>' or provide a declaration of 'exit'
cp /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
if [ $? -ne 0 ] ; then
echo "$PACKAGE make failed"
exit 1
fi
mkdir $SW_BLDDIR/bin
mkdir: cannot create directory `/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin': File exists
cp namd2 $SW_BLDDIR/bin
cp charmrun $SW_BLDDIR/bin
cp flipbinpdb $SW_BLDDIR/bin
cp flipdcd $SW_BLDDIR/bin
cp psfgen $SW_BLDDIR/bin
cd ../
############################### if this far, return 0
exit 0
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/rebuild : passed (0)
[SSH] completed
[SSH] exit-status: 0
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"
echo $PATH $SW_CONFIG $PYTHONPATH SW_WORKDIR > /dev/null
export SW_CONFIG=$SW_CONFIG
export SW_WORKDIR=$SW_WORKDIR
cd $SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swtestwait
~/bin/findnamdvals.sh
[SSH] executing...
Waiting for job 13272397.bw to start ...
Waiting for job 13272397.bw to start ...
Waiting for job 13272397.bw to start ...
Waiting for job 13272397.bw to start ...
Submitted job 13272397.bw is running. Following .running ...
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.80679
Info: TIME FOR READING PDB FILE: 0.371537
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.18635 s, 3129.61 MB of memory in use
Info: Startup phase 0 took 0.000208248 s, 3129.61 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.198859 s, 3151.62 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101276 s, 3151.62 MB of memory in use
Info: Startup phase 3 took 0.000139422 s, 3151.62 MB of memory in use
Info: Startup phase 4 took 0.000386154 s, 3151.62 MB of memory in use
Info: Startup phase 5 took 0.000120661 s, 3151.62 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0450697 s, 3170.2 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.414873 s, 3170.2 MB of memory in use
Info: Startup phase 8 took 0.00752093 s, 3178.2 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000495672 s, 3178.2 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00573001 s, 3178.2 MB of memory in use
Info: Startup phase 11 took 0.000231464 s, 3178.2 MB of memory in use
Info: Startup phase 12 took 0.000218192 s, 3178.2 MB of memory in use
Info: Finished startup at 6.86121 s, 3178.2 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8938 24849.5776 0.0000 0.0000 58070.8721 -222575.0713 211.2459 -280645.9434 -223447.0520 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2976 25088.6262 0.0000 0.0000 59867.7845 -223079.1303 217.7825 -282946.9148 -223360.7366 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2218 25459.6294 0.0000 0.0000 52507.9934 -222544.6643 191.0096 -275052.6577 -223356.7147 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0125 25887.6534 0.0000 0.0000 42953.1287 -221679.2678 156.2517 -264632.3965 -223352.8549 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3012 26266.0174 0.0000 0.0000 42465.0707 -221790.4530 154.4763 -264255.5237 -223296.4332 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9404 26591.7245 0.0000 0.0000 50541.8171 -222627.2006 183.8572 -273169.0177 -223230.8088 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2673 26963.6414 0.0000 0.0000 55373.6415 -223162.5382 201.4341 -278536.1797 -223232.0105 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0267 27435.0793 0.0000 0.0000 49899.6949 -222651.4171 181.5214 -272551.1120 -223231.3830 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
ENERGY: 12 26285.2529 18611.6925 5237.4073 254.5717 -340969.2133 27945.8074 0.0000 0.0000 40727.6954 -221906.7861 148.1562 -262634.4815 -223172.5614 148.1562 -1887.2027 -1155.3187 921491.4634 -1887.2027 -1155.3187
ENERGY: 13 25810.1550 20340.2227 5243.3633 239.3557 -340247.5483 28408.4744 0.0000 0.0000 38364.5171 -221841.4601 139.5596 -260205.9772 -223110.9488 139.5596 -1878.7367 -948.4511 921491.4634 -1878.7367 -948.4511
ENERGY: 14 18229.5293 21618.1813 5255.0116 219.9345 -339811.4722 28840.3575 0.0000 0.0000 43120.5707 -222527.8873 156.8608 -265648.4580 -223112.7585 156.8608 -1024.8387 -790.0064 921491.4634 -1024.8387 -790.0064
ENERGY: 15 14141.3260 21914.0174 5270.4562 198.4604 -339999.9011 29330.1986 0.0000 0.0000 46274.3874 -222871.0550 168.3335 -269145.4425 -223114.1848 168.3335 -276.1129 -654.0185 921491.4634 -276.1129 -654.0185
ENERGY: 16 18533.5985 21379.4766 5286.3853 177.1317 -341073.7438 29909.1296 0.0000 0.0000 43310.7888 -222477.2332 157.5527 -265788.0221 -223107.6652 157.5527 -215.9503 -534.2016 921491.4634 -215.9503 -534.2016
ENERGY: 17 24285.5817 20685.3759 5300.2791 158.0483 -342718.3075 30497.9364 0.0000 0.0000 39857.6662 -221933.4200 144.9912 -261791.0862 -223067.7881 144.9912 -418.5180 -445.9262 921491.4634 -418.5180 -445.9262
ENERGY: 18 23242.4117 20468.5288 5310.2672 142.6286 -344641.7090 31004.0211 0.0000 0.0000 42309.0086 -222164.8430 153.9085 -264473.8516 -223068.8514 153.9085 -264.8021 -408.6302 921491.4634 -264.8021 -408.6302
ENERGY: 19 18143.9400 20989.5296 5316.6991 131.8194 -346529.5496 31434.4322 0.0000 0.0000 47714.3022 -222798.8270 173.5715 -270513.1292 -223071.3655 173.5715 41.9014 -392.2664 921491.4634 41.9014 -392.2664
LDB: ============= START OF LOAD BALANCING ============== 16.3791
LDB: ============== END OF LOAD BALANCING =============== 16.3792
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 16.3797
TIMING: 20 CPU: 10.447, 0.473988/step Wall: 10.447, 0.473988/step, 0.0631985 hours remaining, 3219.699219 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 20 17965.5059 22054.9968 5321.8173 125.9640 -348206.1515 31862.6111 0.0000 0.0000 47960.4282 -222914.8282 174.4669 -270875.2563 -223082.7606 174.4669 -133.8116 -346.5459 921491.4634 -133.8116 -346.5459
ENERGY: 21 24039.1424 23261.1505 5329.8150 124.9653 -349366.5698 32291.6370 0.0000 0.0000 42039.3837 -222280.4759 152.9277 -264319.8595 -223063.1337 152.9277 -740.3955 -247.6204 921491.4634 -740.3955 -247.6204
ENERGY: 22 27739.0451 24128.7772 5344.8281 128.0343 -349763.5537 32625.8383 0.0000 0.0000 37948.0934 -221848.9372 138.0447 -259797.0306 -223062.3007 138.0447 -901.2301 -130.9898 921491.4634 -901.2301 -130.9898
ENERGY: 23 23247.6166 24272.4991 5370.4269 134.1642 -349332.6447 32798.0362 0.0000 0.0000 41280.9383 -222228.9633 150.1687 -263509.9016 -223063.4052 150.1687 -121.6534 -27.8474 921491.4634 -121.6534 -27.8474
ENERGY: 24 16511.8017 23459.5973 5407.7262 142.1780 -348420.3087 32880.6042 0.0000 0.0000 47144.4571 -222873.9442 171.4986 -270018.4013 -223056.8661 171.4986 942.5310 70.4533 921491.4634 942.5310 70.4533
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 40 CPU: 19.9259, 0.473946/step Wall: 19.9259, 0.473946/step, 0.0605598 hours remaining, 3220.589844 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 60 CPU: 29.3949, 0.473449/step Wall: 29.3949, 0.473449/step, 0.057866 hours remaining, 3220.964844 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 68 17680.6162 19473.4214 5665.6119 169.8446 -336816.7450 24355.0772 0.0000 0.0000 46695.1031 -222777.0706 169.8640 -269472.1736 -222563.1959 169.8640 -533.1231 -1350.2483 921491.4634 -533.1231 -1350.2483
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 76 24088.0854 20909.5964 5804.9697 189.4305 -335690.6755 23665.5790 0.0000 0.0000 39065.9954 -221967.0190 142.1114 -261033.0145 -222445.7222 142.1114 -89.2495 -2070.9252 921491.4634 -89.2495 -2070.9252
ENERGY: 77 22199.2676 22223.0497 5809.9321 192.8995 -336701.6737 23613.9740 0.0000 0.0000 40464.2915 -222198.2594 147.1980 -262662.5509 -222417.3391 147.1980 -599.8259 -2169.1062 921491.4634 -599.8259 -2169.1062
ENERGY: 78 17886.0019 22851.3492 5805.4285 195.2662 -337741.3158 23553.3821 0.0000 0.0000 44753.0527 -222696.8351 162.7993 -267449.8879 -222421.1606 162.7993 -1412.5336 -2278.9367 921491.4634 -1412.5336 -2278.9367
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TIMING: 80 CPU: 38.85, 0.472757/step Wall: 38.85, 0.472757/step, 0.0551549 hours remaining, 3221.195312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 87 21898.5873 20858.8153 5750.7775 172.4431 -333299.4427 22859.7331 0.0000 0.0000 39513.3019 -222245.7845 143.7385 -261759.0864 -222398.3220 143.7385 -1739.2135 -2002.6067 921491.4634 -1739.2135 -2002.6067
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 90 22711.6047 19691.0676 5699.8921 181.1111 -335712.1130 22705.2746 0.0000 0.0000 42377.6759 -222345.4869 154.1583 -264723.1628 -222389.2092 154.1583 -2670.9831 -2080.5817 921491.4634 -2670.9831 -2080.5817
ENERGY: 91 23737.5988 18627.1145 5683.0577 187.2277 -335678.4156 22643.5819 0.0000 0.0000 42539.3830 -222260.4520 154.7466 -264799.8351 -222388.3579 154.7466 -2499.0953 -2078.8098 921491.4634 -2499.0953 -2078.8098
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LDB: ============= START OF LOAD BALANCING ============== 54.2367
LDB: Largest compute 200 load 0.429880 is 1.2% of average load 36.770557
LDB: Average compute 0.051513 is 0.1% of average load 36.770557
LDB: Partitioning computes with target load 3.677056
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.055424
LDB: ============== END OF LOAD BALANCING =============== 54.2388
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.2396
Info: Initial time: 4 CPUs 0.473249 s/step 5.47742 days/ns 3221.51 MB memory
TIMING: 100 CPU: 48.2958, 0.472292/step Wall: 48.2958, 0.472292/step, 0.0524769 hours remaining, 3221.511719 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 63.6655
LDB: ============== END OF LOAD BALANCING =============== 63.6656
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 63.666
TIMING: 120 CPU: 57.7191, 0.471161/step Wall: 57.7191, 0.471161/step, 0.0497337 hours remaining, 3221.679688 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 138 21874.8525 19195.4802 5730.8549 192.8766 -333203.4345 21083.5324 0.0000 0.0000 42784.9639 -222340.8739 155.6399 -265125.8378 -222213.1816 155.6399 -2704.7056 -2927.3525 921491.4634 -2704.7056 -2927.3525
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TIMING: 140 CPU: 67.1407, 0.471079/step Wall: 67.1407, 0.471079/step, 0.0471079 hours remaining, 3221.812500 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 157 20043.0838 19943.2666 5753.0946 171.8900 -332363.0657 20715.7865 0.0000 0.0000 43325.6934 -222410.2508 157.6070 -265735.9442 -222155.5006 157.6070 -38.8544 -2554.7665 921491.4634 -38.8544 -2554.7665
ENERGY: 158 21695.0846 19425.3239 5743.5667 171.3409 -332829.8100 20761.5806 0.0000 0.0000 42713.6820 -222319.2313 155.3806 -265032.9133 -222157.3218 155.3806 -715.5936 -2586.7969 921491.4634 -715.5936 -2586.7969
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TIMING: 160 CPU: 76.5529, 0.470611/step Wall: 76.5529, 0.470611/step, 0.0444466 hours remaining, 3222.160156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 180 CPU: 85.9499, 0.469852/step Wall: 85.9499, 0.469852/step, 0.0417646 hours remaining, 3222.160156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 101.295
LDB: Largest compute 200 load 0.424514 is 1.2% of average load 36.595565
LDB: Average compute 0.051261 is 0.1% of average load 36.595565
LDB: TIME 101.297 LOAD: AVG 36.5956 MAX 37.6292 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.52 MB
LDB: TIME 101.299 LOAD: AVG 36.5956 MAX 37.4692 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.52 MB
LDB: ============== END OF LOAD BALANCING =============== 101.301
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.304
Info: Initial time: 4 CPUs 0.470494 s/step 5.44553 days/ns 3223.61 MB memory
TIMING: 200 CPU: 95.355, 0.470256/step Wall: 95.355, 0.470256/step, 0.039188 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 218 20165.9156 19540.0891 5761.2415 184.9927 -333856.1148 21546.6561 0.0000 0.0000 44178.6837 -222478.5359 160.7099 -266657.2197 -222068.8154 160.7099 -2628.0652 -2703.9746 921491.4634 -2628.0652 -2703.9746
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TIMING: 220 CPU: 104.759, 0.470188/step Wall: 104.759, 0.470188/step, 0.0365701 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 230 21999.2455 20926.2538 5717.1889 185.9786 -336838.6563 21834.6451 0.0000 0.0000 43751.0552 -222424.2891 159.1543 -266175.3444 -222088.6907 159.1543 -4902.3779 -2766.0557 921491.4634 -4902.3779 -2766.0557
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ENERGY: 233 20035.6403 19318.2044 5703.4910 182.6157 -334889.2830 21760.7377 0.0000 0.0000 45350.0990 -222538.4949 164.9712 -267888.5939 -222089.6818 164.9712 -3899.2117 -2646.7386 921491.4634 -3899.2117 -2646.7386
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ENERGY: 236 20566.0779 18629.1002 5714.2865 178.3391 -332585.8848 21721.5012 0.0000 0.0000 43477.4014 -222299.1785 158.1588 -265776.5799 -222073.0117 158.1588 -108.6483 -2371.7044 921491.4634 -108.6483 -2371.7044
ENERGY: 237 20196.0058 18940.2032 5726.8243 176.7459 -333068.3186 21749.0157 0.0000 0.0000 43898.3781 -222381.1457 159.6902 -266279.5238 -222063.3603 159.6902 -172.1588 -2373.2012 921491.4634 -172.1588 -2373.2012
ENERGY: 238 19419.4412 19404.0885 5740.6977 175.0128 -333964.3152 21778.9044 0.0000 0.0000 44901.2439 -222544.9268 163.3384 -267446.1708 -222065.9776 163.3384 -987.6013 -2425.5310 921491.4634 -987.6013 -2425.5310
ENERGY: 239 20428.8615 19846.5440 5752.8836 173.1946 -334966.8378 21816.7509 0.0000 0.0000 44416.4636 -222532.1395 161.5749 -266948.6032 -222068.9823 161.5749 -2385.1781 -2499.0797 921491.4634 -2385.1781 -2499.0797
TIMING: 240 CPU: 114.154, 0.469747/step Wall: 114.154, 0.469747/step, 0.0339262 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 240 22861.0420 20119.9135 5760.6910 171.4213 -335766.3624 21854.4253 0.0000 0.0000 42641.4777 -222357.3916 155.1180 -264998.8693 -222074.0950 155.1180 -3844.9084 -2568.3896 921491.4634 -3844.9084 -2568.3896
ENERGY: 241 23920.0053 20195.4873 5762.7124 169.9828 -336129.3250 21865.1032 0.0000 0.0000 41957.8936 -222258.1404 152.6313 -264216.0340 -222063.9155 152.6313 -4724.4491 -2616.3453 921491.4634 -4724.4491 -2616.3453
ENERGY: 242 22110.7716 20111.8208 5758.5348 169.0441 -335904.8194 21831.0568 0.0000 0.0000 43526.8721 -222396.7192 158.3388 -265923.5913 -222063.5733 158.3388 -4623.1689 -2633.0913 921491.4634 -4623.1689 -2633.0913
ENERGY: 243 19462.3619 19969.6445 5749.3614 168.8705 -335233.7066 21770.4748 0.0000 0.0000 45537.0692 -222575.9242 165.6513 -268112.9934 -222061.6671 165.6513 -3760.4505 -2614.6992 921491.4634 -3760.4505 -2614.6992
ENERGY: 244 18822.2464 19849.3934 5737.4544 169.6534 -334482.6007 21720.5676 0.0000 0.0000 45629.1664 -222554.1190 165.9864 -268183.2854 -222078.7767 165.9864 -2667.7299 -2573.2149 921491.4634 -2667.7299 -2573.2149
ENERGY: 245 20148.2369 19811.7599 5725.7785 171.4559 -334087.5944 21701.2470 0.0000 0.0000 44168.5249 -222360.5913 160.6730 -266529.1162 -222068.6362 160.6730 -1771.6901 -2533.5454 921491.4634 -1771.6901 -2533.5454
ENERGY: 246 20878.5482 19853.7024 5716.8932 174.1558 -334213.1203 21705.0851 0.0000 0.0000 43600.4183 -222284.3174 158.6063 -265884.7357 -222067.4292 158.6063 -1173.7930 -2523.3912 921491.4634 -1173.7930 -2523.3912
ENERGY: 247 19868.5286 19979.6439 5712.7400 177.5412 -334802.1839 21719.8455 0.0000 0.0000 44912.1914 -222431.6933 163.3782 -267343.8847 -222068.1390 163.3782 -983.0000 -2552.5930 921491.4634 -983.0000 -2552.5930
ENERGY: 248 19035.4923 20164.4296 5713.8450 181.3144 -335623.1350 21746.4311 0.0000 0.0000 46185.9364 -222595.6862 168.0117 -268781.6226 -222090.3124 168.0117 -1359.1245 -2608.3065 921491.4634 -1359.1245 -2608.3065
ENERGY: 249 20484.3304 20353.6193 5719.1624 185.0800 -336433.0064 21788.9034 0.0000 0.0000 45370.8154 -222531.0956 165.0466 -267901.9109 -222082.9708 165.0466 -2308.0285 -2671.2385 921491.4634 -2308.0285 -2671.2385
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 250 23155.2056 20422.5257 5726.1009 188.5682 -336907.4406 21832.9289 0.0000 0.0000 43252.1659 -222329.9454 157.3395 -265582.1113 -222084.2875 157.3395 -3365.2094 -2722.3879 921491.4634 -3365.2094 -2722.3879
ENERGY: 251 24002.1398 20302.5996 5731.6573 191.5295 -336816.8445 21849.8673 0.0000 0.0000 42475.2392 -222263.8117 154.5132 -264739.0510 -222084.8986 154.5132 -3958.0339 -2753.0723 921491.4634 -3958.0339 -2753.0723
ENERGY: 252 21994.9041 20013.1600 5733.2541 193.8023 -336093.2675 21826.9295 0.0000 0.0000 43905.3721 -222425.8454 159.7157 -266331.2175 -222091.3303 159.7157 -3843.4682 -2758.0338 921491.4634 -3843.4682 -2758.0338
ENERGY: 253 19499.8636 19667.1123 5729.5496 195.2411 -334977.1805 21784.0537 0.0000 0.0000 45520.0193 -222581.3410 165.5893 -268101.3603 -222082.7203 165.5893 -3300.1274 -2735.8132 921491.4634 -3300.1274 -2735.8132
ENERGY: 254 19073.0881 19348.2297 5720.5008 195.9622 -333839.8797 21752.6524 0.0000 0.0000 45220.9196 -222528.5269 164.5013 -267749.4465 -222080.4684 164.5013 -2707.1337 -2696.1701 921491.4634 -2707.1337 -2696.1701
ENERGY: 255 20324.2312 19109.4103 5707.6062 196.0620 -333099.9232 21746.1515 0.0000 0.0000 43667.4211 -222349.0408 158.8501 -266016.4619 -222078.3973 158.8501 -2282.5425 -2662.7814 921491.4634 -2282.5425 -2662.7814
ENERGY: 256 20899.4410 18950.9579 5693.4518 195.6570 -332975.5972 21757.6848 0.0000 0.0000 43181.1612 -222297.2436 157.0812 -265478.4048 -222071.2738 157.0812 -2042.2409 -2664.5199 921491.4634 -2042.2409 -2664.5199
ENERGY: 257 20029.5653 18878.1874 5681.1759 194.7976 -333481.0039 21780.2419 0.0000 0.0000 44488.5469 -222428.4889 161.8371 -266917.0358 -222060.1682 161.8371 -2035.5362 -2692.1442 921491.4634 -2035.5362 -2692.1442
ENERGY: 258 19453.5866 18882.0667 5673.2911 193.6684 -334373.1544 21817.5077 0.0000 0.0000 45796.2579 -222556.7760 166.5942 -268353.0340 -222062.0606 166.5942 -2331.2328 -2737.1920 921491.4634 -2331.2328 -2737.1920
ENERGY: 259 20717.7708 18984.1029 5671.3007 192.3773 -335369.5276 21871.0066 0.0000 0.0000 45431.1556 -222501.8137 165.2661 -267932.9693 -222063.7304 165.2661 -2890.3671 -2780.4962 921491.4634 -2890.3671 -2780.4962
TIMING: 260 CPU: 123.538, 0.469237/step Wall: 123.538, 0.469237/step, 0.0312825 hours remaining, 3223.910156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 260 22744.9543 19188.2462 5675.1875 191.0393 -336169.7727 21924.7893 0.0000 0.0000 44083.4306 -222362.1254 160.3634 -266445.5560 -222069.6810 160.3634 -3407.4793 -2810.9878 921491.4634 -3407.4793 -2810.9878
ENERGY: 261 23215.5573 19485.4655 5683.6413 189.7700 -336523.9798 21953.3902 0.0000 0.0000 43676.0234 -222320.1321 158.8814 -265996.1555 -222052.8234 158.8814 -3555.3695 -2822.8648 921491.4634 -3555.3695 -2822.8648
ENERGY: 262 21606.2723 19814.6777 5694.0656 188.7122 -336291.7857 21947.6074 0.0000 0.0000 44601.6348 -222438.8158 162.2485 -267040.4506 -222052.4321 162.2485 -3214.7561 -2810.4637 921491.4634 -3214.7561 -2810.4637
ENERGY: 263 19781.1227 20140.5622 5703.8103 187.9445 -335614.9711 21924.4740 0.0000 0.0000 45349.7773 -222527.2802 164.9700 -267877.0575 -222051.1545 164.9700 -2647.8116 -2773.3903 921491.4634 -2647.8116 -2773.3903
ENERGY: 264 19385.2260 20436.4305 5710.6950 187.5052 -334855.9510 21907.7772 0.0000 0.0000 44751.4785 -222476.8386 162.7936 -267228.3171 -222069.1981 162.7936 -2191.1927 -2723.5294 921491.4634 -2191.1927 -2723.5294
ENERGY: 265 19946.8416 20681.9925 5713.6241 187.4393 -334395.6631 21906.0163 0.0000 0.0000 43607.6375 -222352.1118 158.6326 -265959.7493 -222054.3369 158.6326 -2038.0573 -2683.6035 921491.4634 -2038.0573 -2683.6035
ENERGY: 266 20048.7900 20788.8700 5712.1327 187.6137 -334399.4576 21914.4805 0.0000 0.0000 43399.3798 -222348.1910 157.8750 -265747.5708 -222054.3632 157.8750 -2130.7241 -2664.5956 921491.4634 -2130.7241 -2664.5956
ENERGY: 267 19648.0905 20691.2678 5707.0583 187.8501 -334831.4855 21930.8374 0.0000 0.0000 44220.2171 -222446.1643 160.8610 -266666.3814 -222055.6582 160.8610 -2435.4234 -2662.6783 921491.4634 -2435.4234 -2662.6783
ENERGY: 268 19962.9159 20375.7516 5700.1930 187.9286 -335513.7450 21959.1257 0.0000 0.0000 44823.5380 -222504.2923 163.0557 -267327.8302 -222075.9873 163.0557 -2903.2124 -2658.6181 921491.4634 -2903.2124 -2658.6181
ENERGY: 269 21396.7813 19927.1703 5694.0390 187.7640 -336221.0663 21997.2160 0.0000 0.0000 44586.5101 -222431.5857 162.1935 -267018.0957 -222066.1972 162.1935 -3401.4128 -2647.2949 921491.4634 -3401.4128 -2647.2949
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 270 22620.1934 19450.9168 5690.3173 187.1618 -336650.6776 22028.8070 0.0000 0.0000 44308.0076 -222365.2736 161.1804 -266673.2812 -222067.0433 161.1804 -3583.3633 -2617.7583 921491.4634 -3583.3633 -2617.7583
ENERGY: 271 22345.5824 19078.8066 5690.0209 186.1610 -336571.7894 22035.2501 0.0000 0.0000 44829.4474 -222406.5210 163.0772 -267235.9684 -222066.8384 163.0772 -3261.2174 -2569.2622 921491.4634 -3261.2174 -2569.2622
ENERGY: 272 21021.5584 18896.0663 5692.8269 184.9335 -335921.4616 22015.0580 0.0000 0.0000 45607.7078 -222503.3108 165.9083 -268111.0186 -222081.1570 165.9083 -2551.9684 -2501.8804 921491.4634 -2551.9684 -2501.8804
ENERGY: 273 20123.2135 18932.9081 5697.5118 183.8526 -334925.7013 21985.5296 0.0000 0.0000 45502.7163 -222499.9693 165.5264 -268002.6856 -222069.0457 165.5264 -1837.1975 -2434.6760 921491.4634 -1837.1975 -2434.6760
ENERGY: 274 20074.7416 19121.4863 5701.6806 183.0070 -333931.6257 21965.2977 0.0000 0.0000 44478.5176 -222406.8950 161.8006 -266885.4126 -222066.8026 161.8006 -1366.5213 -2384.6634 921491.4634 -1366.5213 -2384.6634
ENERGY: 275 20005.4318 19374.0681 5703.3424 182.5376 -333318.5603 21960.8299 0.0000 0.0000 43741.9682 -222350.3822 159.1213 -266092.3504 -222065.7690 159.1213 -1269.7930 -2374.8868 921491.4634 -1269.7930 -2374.8868
ENERGY: 276 19401.8502 19594.7508 5701.2547 182.4904 -333292.1278 21971.0410 0.0000 0.0000 44028.5271 -222412.2136 160.1637 -266440.7407 -222072.9391 160.1637 -1580.1299 -2417.6040 921491.4634 -1580.1299 -2417.6040
ENERGY: 277 19149.2971 19724.7160 5695.5210 182.9396 -333864.3449 21997.2387 0.0000 0.0000 44632.8112 -222481.8214 162.3619 -267114.6325 -222061.0984 162.3619 -2311.7543 -2498.0544 921491.4634 -2311.7543 -2498.0544
ENERGY: 278 20199.4575 19713.7759 5686.9122 183.6585 -334821.0999 22041.3359 0.0000 0.0000 44532.2540 -222463.7057 161.9961 -266995.9598 -222063.4127 161.9961 -3254.8156 -2593.7696 921491.4634 -3254.8156 -2593.7696
ENERGY: 279 21984.3649 19593.9430 5677.5176 184.5187 -335888.5796 22096.4200 0.0000 0.0000 43975.0879 -222376.7275 159.9693 -266351.8154 -222065.2020 159.9693 -4044.3212 -2682.8389 921491.4634 -4044.3212 -2682.8389
TIMING: 280 CPU: 132.911, 0.468634/step Wall: 132.911, 0.468634/step, 0.0286388 hours remaining, 3223.910156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 280 22859.3231 19458.4366 5670.0026 185.3899 -336752.6629 22145.1355 0.0000 0.0000 44066.7336 -222367.6416 160.3027 -266434.3752 -222073.4244 160.3027 -4286.3893 -2748.0546 921491.4634 -4286.3893 -2748.0546
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ENERGY: 282 20943.7898 19615.5378 5669.9796 186.8360 -336942.5030 22176.7655 0.0000 0.0000 45823.3369 -222526.2575 166.6927 -268349.5943 -222063.3313 166.6927 -2992.3271 -2779.3667 921491.4634 -2992.3271 -2779.3667
ENERGY: 283 20432.1059 19966.6614 5678.8137 187.1634 -336251.9197 22171.0649 0.0000 0.0000 45328.8519 -222487.2584 164.8939 -267816.1103 -222060.8457 164.8939 -2008.7736 -2748.2305 921491.4634 -2008.7736 -2748.2305
ENERGY: 284 20506.3998 20401.8821 5692.0830 187.1346 -335412.6295 22166.2911 0.0000 0.0000 44071.4478 -222387.3911 160.3198 -266458.8389 -222061.5537 160.3198 -1267.2790 -2712.3901 921491.4634 -1267.2790 -2712.3901
ENERGY: 285 20203.3287 20789.9629 5707.3565 186.7145 -334827.1961 22167.0167 0.0000 0.0000 43418.2628 -222354.5542 157.9437 -265772.8169 -222053.5963 157.9437 -1010.8437 -2700.0819 921491.4634 -1010.8437 -2700.0819
ENERGY: 286 19396.6308 20966.5622 5721.5031 185.8230 -334658.1144 22176.6864 0.0000 0.0000 43785.6879 -222425.2209 159.2803 -266210.9088 -222054.0579 159.2803 -1306.7501 -2717.2846 921491.4634 -1306.7501 -2717.2846
ENERGY: 287 19176.1189 20856.7823 5731.9346 184.4714 -334918.1476 22200.2911 0.0000 0.0000 44282.9436 -222485.6056 161.0892 -266768.5492 -222055.7250 161.0892 -2148.9611 -2753.3343 921491.4634 -2148.9611 -2753.3343
ENERGY: 288 20263.2087 20475.2852 5736.9557 182.7335 -335468.3146 22237.9039 0.0000 0.0000 44116.9903 -222455.2373 160.4855 -266572.2277 -222066.9051 160.4855 -3310.5878 -2790.1553 921491.4634 -3310.5878 -2790.1553
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 290 22615.9846 19325.5267 5730.3279 178.6973 -336571.4574 22308.2176 0.0000 0.0000 44027.4232 -222385.2800 160.1597 -266412.7033 -222063.4682 160.1597 -4815.3287 -2796.0390 921491.4634 -4815.3287 -2796.0390
ENERGY: 291 22115.7703 18802.2910 5721.4122 176.7646 -336554.3557 22315.5631 0.0000 0.0000 44963.0864 -222459.4681 163.5634 -267422.5545 -222063.1773 163.5634 -4450.6674 -2738.1108 921491.4634 -4450.6674 -2738.1108
ENERGY: 292 21262.5909 18472.4017 5712.2431 175.1751 -335987.2698 22302.8786 0.0000 0.0000 45560.3453 -222501.6352 165.7360 -268061.9805 -222072.5158 165.7360 -3435.4157 -2639.3512 921491.4634 -3435.4157 -2639.3512
ENERGY: 293 20783.4660 18411.7344 5705.7252 174.1484 -335092.9704 22279.1183 0.0000 0.0000 45283.4160 -222455.3622 164.7286 -267738.7781 -222061.5451 164.7286 -2166.7337 -2517.2544 921491.4634 -2166.7337 -2517.2544
ENERGY: 294 20398.6128 18589.6438 5703.5791 173.8101 -334179.1784 22254.0801 0.0000 0.0000 44662.2336 -222397.2189 162.4689 -267059.4526 -222058.8847 162.4689 -1006.6042 -2405.5593 921491.4634 -1006.6042 -2405.5593
ENERGY: 295 19706.6742 18924.3584 5706.2255 174.2141 -333602.5013 22236.6570 0.0000 0.0000 44449.5910 -222404.7811 161.6954 -266854.3721 -222057.5857 161.6954 -311.5566 -2335.1539 921491.4634 -311.5566 -2335.1539
ENERGY: 296 19122.8990 19301.4533 5712.5929 175.3096 -333576.4723 22236.1191 0.0000 0.0000 44573.6029 -222454.4956 162.1465 -267028.0984 -222067.3935 162.1465 -347.2082 -2322.9739 921491.4634 -347.2082 -2322.9739
ENERGY: 297 19439.7488 19641.8018 5720.7182 176.9777 -334148.9751 22258.2526 0.0000 0.0000 44466.2679 -222445.2082 161.7561 -266911.4761 -222050.8183 161.7561 -1189.5386 -2359.0875 921491.4634 -1189.5386 -2359.0875
ENERGY: 298 20578.5046 19886.6665 5727.8935 178.9488 -335137.5238 22299.1412 0.0000 0.0000 44067.5345 -222398.8347 160.3056 -266466.3692 -222053.6271 160.3056 -2519.0812 -2427.9309 921491.4634 -2519.0812 -2427.9309
ENERGY: 299 21598.9657 20050.9661 5731.9440 180.9390 -336266.8203 22346.0660 0.0000 0.0000 43977.6322 -222380.3074 159.9785 -266357.9395 -222056.3724 159.9785 -3820.1264 -2506.2687 921491.4634 -3820.1264 -2506.2687
LDB: ============= START OF LOAD BALANCING ============== 148.252
LDB: Largest compute 200 load 0.520155 is 1.1% of average load 45.729402
LDB: Average compute 0.064059 is 0.1% of average load 45.729402
LDB: TIME 148.254 LOAD: AVG 45.7294 MAX 46.9435 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.27 MB
LDB: TIME 148.255 LOAD: AVG 45.7294 MAX 46.9435 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3224.27 MB
LDB: TIME 148.269 LOAD: AVG 45.7294 MAX 46.2348 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: ============== END OF LOAD BALANCING =============== 148.27
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 148.271
Info: Initial time: 4 CPUs 0.469157 s/step 5.43006 days/ns 3224.27 MB memory
TIMING: 300 CPU: 142.29, 0.46894/step Wall: 142.29, 0.46894/step, 0.0260522 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 320 CPU: 151.502, 0.460583/step Wall: 151.502, 0.460583/step, 0.0230292 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 340 CPU: 160.707, 0.460285/step Wall: 160.707, 0.460285/step, 0.0204571 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 360 CPU: 169.904, 0.459852/step Wall: 169.904, 0.459852/step, 0.0178831 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 380 CPU: 179.1, 0.45978/step Wall: 179.1, 0.45978/step, 0.015326 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 194.275
LDB: Largest compute 230 load 0.520764 is 1.1% of average load 45.635302
LDB: Average compute 0.063904 is 0.1% of average load 45.635302
LDB: TIME 194.277 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.27 MB
LDB: TIME 194.278 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: TIME 194.278 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: ============== END OF LOAD BALANCING =============== 194.278
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.279
Info: Benchmark time: 4 CPUs 0.460004 s/step 5.32412 days/ns 3224.27 MB memory
TIMING: 400 CPU: 188.294, 0.459722/step Wall: 188.294, 0.459722/step, 0.0127701 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 420 CPU: 197.461, 0.458342/step Wall: 197.461, 0.458342/step, 0.0101854 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 434 20730.3413 20338.1498 5711.6060 169.3247 -337394.2694 23140.7728 0.0000 0.0000 44883.0997 -222420.9750 163.2724 -267304.0747 -222051.1461 163.2724 -2694.3109 -2227.7888 921491.4634 -2694.3109 -2227.7888
ENERGY: 435 20235.2202 20362.4014 5714.0003 170.8455 -336680.6544 23123.4090 0.0000 0.0000 44675.9839 -222398.7943 162.5190 -267074.7781 -222049.5887 162.5190 -2061.3584 -2179.8954 921491.4634 -2061.3584 -2179.8954
ENERGY: 436 19670.9242 20349.9980 5717.2345 173.0864 -336303.8797 23119.9070 0.0000 0.0000 44847.0984 -222425.6312 163.1414 -267272.7296 -222059.6954 163.1414 -1520.6598 -2145.1617 921491.4634 -1520.6598 -2145.1617
ENERGY: 437 19434.5515 20329.5091 5720.9893 175.9827 -336411.9771 23136.3860 0.0000 0.0000 45159.2690 -222455.2896 164.2770 -267614.5585 -222050.7498 164.2770 -1319.1170 -2134.4849 921491.4634 -1319.1170 -2134.4849
ENERGY: 438 19935.1532 20278.6093 5724.6883 179.3848 -336899.4564 23173.5511 0.0000 0.0000 45148.1328 -222459.9368 164.2365 -267608.0697 -222051.5663 164.2365 -1493.0943 -2145.0882 921491.4634 -1493.0943 -2145.0882
ENERGY: 439 21052.7408 20184.4293 5727.7928 183.0561 -337561.7708 23224.7474 0.0000 0.0000 44760.8216 -222428.1827 162.8276 -267189.0044 -222052.7960 162.8276 -1936.1990 -2169.8748 921491.4634 -1936.1990 -2169.8748
TIMING: 440 CPU: 206.618, 0.457851/step Wall: 206.618, 0.457851/step, 0.00763085 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 440 22071.5685 20036.2368 5729.7526 186.7201 -338123.1796 23276.2478 0.0000 0.0000 44417.5465 -222405.1072 161.5788 -266822.6537 -222059.4766 161.5788 -2408.4613 -2197.9671 921491.4634 -2408.4613 -2197.9671
ENERGY: 441 22355.5487 19860.0406 5730.3487 190.1145 -338361.1706 23313.2037 0.0000 0.0000 44502.6971 -222409.2172 161.8886 -266911.9143 -222050.0853 161.8886 -2716.1028 -2221.5314 921491.4634 -2716.1028 -2221.5314
ENERGY: 442 21853.6118 19664.5348 5729.4854 192.9411 -338090.1525 23327.1560 0.0000 0.0000 44880.6327 -222441.7906 163.2634 -267322.4233 -222049.7748 163.2634 -2710.5576 -2229.0696 921491.4634 -2710.5576 -2229.0696
ENERGY: 443 21064.3316 19487.0722 5727.6164 194.9329 -337369.3142 23320.0151 0.0000 0.0000 45118.1113 -222457.2347 164.1273 -267575.3460 -222048.5989 164.1273 -2448.1648 -2220.3531 921491.4634 -2448.1648 -2220.3531
ENERGY: 444 20449.3364 19357.2690 5725.4095 195.8734 -336464.1916 23301.5269 0.0000 0.0000 44987.7181 -222447.0582 163.6530 -267434.7764 -222057.9792 163.6530 -2090.2100 -2206.4400 921491.4634 -2090.2100 -2206.4400
ENERGY: 445 20125.5609 19307.2518 5723.6513 195.6942 -335759.3908 23283.8132 0.0000 0.0000 44708.7158 -222414.7036 162.6380 -267123.4194 -222046.5422 162.6380 -1846.9627 -2201.6926 921491.4634 -1846.9627 -2201.6926
ENERGY: 446 19947.6804 19324.9005 5722.5430 194.3235 -335494.5702 23276.0445 0.0000 0.0000 44620.2950 -222408.7833 162.3164 -267029.0783 -222046.1615 162.3164 -1800.7518 -2216.7294 921491.4634 -1800.7518 -2216.7294
ENERGY: 447 19914.2847 19416.0209 5722.2107 191.8641 -335769.4393 23282.7452 0.0000 0.0000 44816.5093 -222425.8044 163.0301 -267242.3137 -222046.8337 163.0301 -1993.3113 -2253.0604 921491.4634 -1993.3113 -2253.0604
ENERGY: 448 20187.5921 19583.6798 5722.5764 188.5554 -336503.1794 23303.8899 0.0000 0.0000 45065.6678 -222451.2180 163.9365 -267516.8858 -222059.3475 163.9365 -2372.1879 -2303.7899 921491.4634 -2372.1879 -2303.7899
ENERGY: 449 20877.4061 19832.6983 5723.5712 184.8596 -337500.9065 23334.5919 0.0000 0.0000 45101.1680 -222446.6114 164.0657 -267547.7793 -222047.7094 164.0657 -2827.1082 -2356.1408 921491.4634 -2827.1082 -2356.1408
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 450 21754.4855 20108.1297 5724.4776 181.0897 -338419.3242 23364.6239 0.0000 0.0000 44854.3096 -222432.2081 163.1677 -267286.5176 -222048.7855 163.1677 -3116.6758 -2394.3896 921491.4634 -3116.6758 -2394.3896
ENERGY: 451 22355.5903 20357.7254 5724.7144 177.6517 -338952.0900 23381.8005 0.0000 0.0000 44542.6984 -222411.9095 162.0341 -266954.6078 -222048.8240 162.0341 -3074.2534 -2405.7798 921491.4634 -3074.2534 -2405.7798
ENERGY: 452 22246.2014 20536.0134 5723.8953 174.8859 -338927.1527 23378.0942 0.0000 0.0000 44452.9191 -222415.1434 161.7075 -266868.0625 -222059.6364 161.7075 -2659.9605 -2384.7567 921491.4634 -2659.9605 -2384.7567
ENERGY: 453 21399.8725 20641.1312 5722.2879 173.1350 -338392.7922 23354.5907 0.0000 0.0000 44683.7026 -222418.0724 162.5470 -267101.7749 -222043.5365 162.5470 -2048.3337 -2342.4667 921491.4634 -2048.3337 -2342.4667
ENERGY: 454 20248.3380 20654.1375 5720.2218 172.3637 -337567.1401 23320.6901 0.0000 0.0000 45008.1455 -222443.2435 163.7273 -267451.3890 -222041.8385 163.7273 -1453.4577 -2293.1449 921491.4634 -1453.4577 -2293.1449
ENERGY: 455 19486.7905 20584.7120 5718.4844 172.5169 -336790.6438 23290.4024 0.0000 0.0000 45086.5778 -222451.1597 164.0126 -267537.7375 -222040.8564 164.0126 -1151.8821 -2255.8570 921491.4634 -1151.8821 -2255.8570
ENERGY: 456 19493.3719 20440.6799 5717.7556 173.4248 -336350.1062 23274.9632 0.0000 0.0000 44811.4717 -222438.4390 163.0118 -267249.9107 -222055.3481 163.0118 -1305.5002 -2245.5822 921491.4634 -1305.5002 -2245.5822
ENERGY: 457 20047.4926 20251.9432 5718.5580 174.9241 -336395.8152 23277.8276 0.0000 0.0000 44521.8699 -222403.1997 161.9583 -266925.0697 -222049.4127 161.9583 -1906.4163 -2263.5012 921491.4634 -1906.4163 -2263.5012
ENERGY: 458 20585.8433 20019.2720 5720.7061 176.6081 -336835.0948 23294.7174 0.0000 0.0000 44632.7885 -222405.1594 162.3618 -267037.9479 -222051.2817 162.3618 -2684.6986 -2301.0426 921491.4634 -2684.6986 -2301.0426
ENERGY: 459 20903.4945 19784.9686 5724.0022 178.1985 -337468.1635 23318.6985 0.0000 0.0000 45113.9365 -222444.8647 164.1121 -267558.8012 -222053.1406 164.1121 -3350.5832 -2341.5795 921491.4634 -3350.5832 -2341.5795
TIMING: 460 CPU: 215.765, 0.457347/step Wall: 215.765, 0.457347/step, 0.00508163 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6140 19597.9061 5728.0972 179.4910 -338014.3760 23341.8003 0.0000 0.0000 45423.8565 -222480.6109 165.2395 -267904.4674 -222064.6829 165.2395 -3669.8202 -2365.2411 921491.4634 -3669.8202 -2365.2411
ENERGY: 461 21862.8764 19507.1075 5732.5753 180.4333 -338251.6212 23355.3937 0.0000 0.0000 45154.6138 -222458.6212 164.2601 -267613.2350 -222058.0500 164.2601 -3556.1667 -2361.1798 921491.4634 -3556.1667 -2361.1798
ENERGY: 462 22264.2256 19487.8110 5736.4823 180.9531 -337988.7168 23351.1088 0.0000 0.0000 44559.9292 -222408.2067 162.0968 -266968.1360 -222056.7207 162.0968 -2954.8200 -2323.4250 921491.4634 -2954.8200 -2323.4250
ENERGY: 463 21821.1792 19513.9018 5738.9361 181.1160 -337284.1028 23326.9480 0.0000 0.0000 44313.4572 -222388.5645 161.2002 -266702.0217 -222054.6235 161.2002 -2012.4423 -2264.0777 921491.4634 -2012.4423 -2264.0777
ENERGY: 464 20535.2460 19559.9275 5739.2519 181.0096 -336389.3844 23291.1945 0.0000 0.0000 44654.0269 -222428.7281 162.4391 -267082.7550 -222058.5725 162.4391 -1050.9227 -2205.5269 921491.4634 -1050.9227 -2205.5269
ENERGY: 465 19322.7827 19631.8856 5737.2899 180.7155 -335701.1539 23259.7394 0.0000 0.0000 45094.5691 -222474.1716 164.0416 -267568.7408 -222052.9384 164.0416 -512.3346 -2174.4009 921491.4634 -512.3346 -2174.4009
ENERGY: 466 19088.4510 19708.3582 5733.2107 180.2808 -335443.7732 23245.0607 0.0000 0.0000 45020.7914 -222467.6203 163.7733 -267488.4117 -222052.9782 163.7733 -630.3313 -2182.6711 921491.4634 -630.3313 -2182.6711
ENERGY: 467 19841.8070 19783.1742 5727.6704 179.7757 -335721.0958 23249.4533 0.0000 0.0000 44523.6673 -222415.5479 161.9649 -266939.2152 -222054.3491 161.9649 -1393.6029 -2232.5924 921491.4634 -1393.6029 -2232.5924
ENERGY: 468 20761.8483 19845.4941 5721.5090 179.2779 -336451.5674 23265.8128 0.0000 0.0000 44291.6593 -222385.9660 161.1209 -266677.6253 -222056.3588 161.1209 -2508.6715 -2314.1341 921491.4634 -2508.6715 -2314.1341
ENERGY: 469 21236.3019 19910.2020 5715.6824 178.8504 -337458.3210 23284.3965 0.0000 0.0000 44720.3208 -222412.5670 162.6802 -267132.8878 -222046.0748 162.6802 -3596.7408 -2405.7973 921491.4634 -3596.7408 -2405.7973
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1734 19972.8933 5710.9491 178.5947 -338383.2515 23297.0676 0.0000 0.0000 45346.4580 -222466.1154 164.9580 -267812.5734 -222047.6086 164.9580 -4259.6998 -2477.6832 921491.4634 -4259.6998 -2477.6832
ENERGY: 471 21732.8680 20054.6834 5707.9626 178.5890 -338913.2457 23297.5088 0.0000 0.0000 45471.3371 -222470.2968 165.4122 -267941.6339 -222047.5357 165.4122 -4290.5686 -2504.3176 921491.4634 -4290.5686 -2504.3176
ENERGY: 472 22081.2362 20161.5550 5707.0091 178.9047 -338870.6768 23279.4495 0.0000 0.0000 45028.5299 -222433.9925 163.8014 -267462.5223 -222059.5053 163.8014 -3659.7361 -2479.9183 921491.4634 -3659.7361 -2479.9183
ENERGY: 473 21866.1364 20289.3424 5707.9843 179.6165 -338307.7189 23240.7367 0.0000 0.0000 44634.5173 -222389.3854 162.3681 -267023.9027 -222043.8535 162.3681 -2556.3615 -2408.1657 921491.4634 -2556.3615 -2408.1657
ENERGY: 474 20842.9706 20372.0982 5710.2160 180.7466 -337438.4548 23189.2352 0.0000 0.0000 44733.2305 -222409.9577 162.7272 -267143.1881 -222041.2615 162.7272 -1295.5523 -2316.2727 921491.4634 -1295.5523 -2316.2727
ENERGY: 475 19674.2081 20371.7669 5712.9876 182.2512 -336604.2307 23142.3821 0.0000 0.0000 45070.2138 -222450.4212 163.9531 -267520.6349 -222039.4525 163.9531 -344.6447 -2232.2125 921491.4634 -344.6447 -2232.2125
ENERGY: 476 19235.7861 20282.0268 5715.7683 184.0125 -336100.0895 23115.8470 0.0000 0.0000 45106.0634 -222460.5855 164.0835 -267566.6489 -222053.6131 164.0835 -92.4047 -2183.0652 921491.4634 -92.4047 -2183.0652
ENERGY: 477 19704.7250 20145.9807 5718.4976 185.9230 -336101.8782 23114.2943 0.0000 0.0000 44812.3208 -222420.1368 163.0149 -267232.4577 -222044.8405 163.0149 -667.4944 -2171.8227 921491.4634 -667.4944 -2171.8227
ENERGY: 478 20493.4779 19974.7633 5721.0254 187.7262 -336537.4029 23131.2463 0.0000 0.0000 44627.0330 -222402.1308 162.3409 -267029.1638 -222047.4100 162.3409 -1807.1603 -2198.7955 921491.4634 -1807.1603 -2198.7955
ENERGY: 479 21125.3062 19793.3953 5723.3295 189.2098 -337215.5832 23156.6775 0.0000 0.0000 44802.1573 -222425.5076 162.9779 -267227.6649 -222050.5453 162.9779 -3089.8516 -2246.7917 921491.4634 -3089.8516 -2246.7917
TIMING: 480 CPU: 224.905, 0.456992/step Wall: 224.905, 0.456992/step, 0.00253885 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0330 19623.1963 5725.3111 190.1900 -337854.6780 23181.5121 0.0000 0.0000 45051.6810 -222458.7546 163.8856 -267510.4355 -222064.6205 163.8856 -4077.7328 -2291.4892 921491.4634 -4077.7328 -2291.4892
ENERGY: 481 22092.4854 19510.0434 5727.0952 190.6351 -338199.2476 23196.7962 0.0000 0.0000 45041.3364 -222440.8558 163.8480 -267482.1922 -222052.5261 163.8480 -4466.2395 -2305.6733 921491.4634 -4466.2395 -2305.6733
ENERGY: 482 22186.3468 19466.6797 5728.4963 190.3598 -338044.5413 23192.7477 0.0000 0.0000 44865.8515 -222414.0596 163.2096 -267279.9111 -222051.4108 163.2096 -4059.3099 -2278.0615 921491.4634 -4059.3099 -2278.0615
ENERGY: 483 21553.1415 19511.5748 5729.5660 189.3226 -337426.2180 23165.8743 0.0000 0.0000 44861.8963 -222414.8425 163.1952 -267276.7388 -222048.7667 163.1952 -2964.1722 -2216.4117 921491.4634 -2964.1722 -2216.4117
ENERGY: 484 20460.8928 19631.1941 5730.2465 187.5455 -336590.8877 23126.1354 0.0000 0.0000 45003.6025 -222451.2710 163.7107 -267454.8734 -222059.8735 163.7107 -1565.2422 -2143.1848 921491.4634 -1565.2422 -2143.1848
ENERGY: 485 19688.7722 19800.2992 5730.5256 185.2458 -335902.5859 23092.8472 0.0000 0.0000 44955.5720 -222449.3239 163.5360 -267404.8959 -222045.9599 163.5360 -422.1567 -2086.8735 921491.4634 -422.1567 -2086.8735
ENERGY: 486 19602.5427 19954.8176 5729.7197 182.4662 -335612.3560 23080.3809 0.0000 0.0000 44645.9115 -222416.5175 162.4096 -267062.4290 -222044.6753 162.4096 87.3183 -2070.0981 921491.4634 87.3183 -2070.0981
ENERGY: 487 19881.0926 20072.0212 5727.4347 179.4360 -335846.4475 23091.0545 0.0000 0.0000 44503.3493 -222392.0592 161.8910 -266895.4085 -222045.2400 161.8910 -192.2345 -2106.8840 921491.4634 -192.2345 -2106.8840
ENERGY: 488 20125.2102 20156.1360 5723.5440 176.4338 -336552.5448 23118.8617 0.0000 0.0000 44827.0554 -222425.3037 163.0685 -267252.3591 -222057.1934 163.0685 -1145.7536 -2194.6681 921491.4634 -1145.7536 -2194.6681
ENERGY: 489 20526.8876 20236.4608 5718.5748 173.8639 -337540.4650 23156.7311 0.0000 0.0000 45266.1000 -222461.8469 164.6656 -267727.9468 -222045.6081 164.6656 -2511.2408 -2316.7068 921491.4634 -2511.2408 -2316.7068
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7492 20292.9022 5712.8912 171.8438 -338458.1354 23196.4878 0.0000 0.0000 45213.5624 -222459.6989 164.4745 -267673.2613 -222048.2203 164.4745 -3823.4042 -2437.4157 921491.4634 -3823.4042 -2437.4157
ENERGY: 491 22430.4639 20312.1361 5707.3794 170.5404 -338984.5785 23226.0937 0.0000 0.0000 44733.0086 -222404.9564 162.7264 -267137.9650 -222049.4634 162.7264 -4629.6937 -2524.6217 921491.4634 -4629.6937 -2524.6217
ENERGY: 492 22612.9545 20289.6811 5702.9944 170.0208 -338937.5805 23232.7204 0.0000 0.0000 44542.1947 -222387.0146 162.0323 -266929.2094 -222060.3856 162.0323 -4606.8526 -2557.4731 921491.4634 -4606.8526 -2557.4731
ENERGY: 493 21558.2186 20260.7373 5700.7779 170.3201 -338358.0621 23214.0535 0.0000 0.0000 45033.8226 -222420.1321 163.8207 -267453.9547 -222046.5896 163.8207 -3796.3820 -2540.0998 921491.4634 -3796.3820 -2540.0998
ENERGY: 494 20068.3365 20225.0259 5700.9805 171.2193 -337454.3822 23183.0793 0.0000 0.0000 45622.2472 -222483.4935 165.9612 -268105.7406 -222044.0863 165.9612 -2500.8993 -2482.1070 921491.4634 -2500.8993 -2482.1070
ENERGY: 495 19383.2461 20186.8299 5703.5926 172.5416 -336566.9873 23159.4622 0.0000 0.0000 45484.1229 -222477.1921 165.4587 -267961.3150 -222041.5559 165.4587 -1249.6838 -2407.3058 921491.4634 -1249.6838 -2407.3058
ENERGY: 496 19722.4832 20130.6470 5708.0350 174.0933 -335998.7143 23154.2633 0.0000 0.0000 44699.5270 -222409.6655 162.6046 -267109.1925 -222049.0665 162.6046 -478.8998 -2343.4752 921491.4634 -478.8998 -2343.4752
ENERGY: 497 20212.6668 20059.9174 5713.4613 175.7242 -335952.5030 23166.3542 0.0000 0.0000 44261.0288 -222363.3505 161.0095 -266624.3793 -222042.7495 161.0095 -421.0234 -2316.7929 921491.4634 -421.0234 -2316.7929
ENERGY: 498 20182.0167 19957.1214 5718.5596 177.2604 -336366.4922 23189.3581 0.0000 0.0000 44728.2532 -222413.9228 162.7091 -267142.1760 -222044.5214 162.7091 -993.4682 -2331.6474 921491.4634 -993.4682 -2331.6474
ENERGY: 499 20158.0681 19847.7308 5722.4089 178.6361 -337058.4813 23219.2399 0.0000 0.0000 45439.2640 -222493.1334 165.2956 -267932.3974 -222047.2057 165.2956 -2020.8691 -2376.3392 921491.4634 -2020.8691 -2376.3392
Info: Benchmark time: 4 CPUs 0.456766 s/step 5.28664 days/ns 3224.27 MB memory
TIMING: 500 CPU: 233.971, 0.453306/step Wall: 233.971, 0.453306/step, 0 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8938 19756.6585 5724.4523 179.8271 -337741.4181 23251.1003 0.0000 0.0000 45359.0774 -222495.4086 165.0039 -267854.4860 -222061.0904 165.0039 -3197.5171 -2425.4144 921491.4634 -3197.5171 -2425.4144
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.203 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.203 MB of memory in use
====================================================
WallClock: 240.842010 CPUTime: 240.842010 Memory: 3229.203125 MB
[Partition 0][Node 0] End of program
Application 109844239 resources: utime ~947s, stime ~18s, Rss ~126700, inblocks ~67007, outblocks ~72238
Displaying test.log:
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/retest : batch submitted (2)
Charm++> Running on Gemini (GNI) with 4 processes
Charm++> static SMSG
Charm++> SMSG memory: 19.8KB
Charm++> memory pool init block size: 8MB, total memory pool limit 0MB (0 means no limit)
Charm++> memory pool registered memory limit: 200000MB, send limit: 100000MB
Charm++> Cray TLB page size: 2048K
Charm++> Running in non-SMP mode: numPes 4
Charm++> Using recursive bisection (scheme 3) for topology aware partitions
Converse/Charm++ Commit ID: v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (32-way SMP).
Info: NAMD 2.10 for CRAY-XT-ugni
Info:
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info:
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info:
Info: Based on Charm++/Converse 60601 for gni-crayxc
Info: Built Wed Dec 22 04:13:42 CST 2021 by bwjenkins on h2ologin3
Info: Running on 4 processors, 4 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.00674445 s
Info: 3103.84 MB of memory in use based on /proc/self/stat
Info: Configuration file is apoa1.namd
Info: Working in the current directory /mnt/c/scratch/system/bwjenkins/sw_workdir/retest/2021-12-22T04:14:49.906346/namd_2.10_cle5.2_gnu5.1.0
TCL: Suspending until startup complete.
Info: SIMULATION PARAMETERS:
Info: TIMESTEP 1
Info: NUMBER OF STEPS 500
Info: STEPS PER CYCLE 20
Info: PERIODIC CELL BASIS 1 108.861 0 0
Info: PERIODIC CELL BASIS 2 0 108.861 0
Info: PERIODIC CELL BASIS 3 0 0 77.758
Info: PERIODIC CELL CENTER 0 0 0
Info: LOAD BALANCER Centralized
Info: LOAD BALANCING STRATEGY New Load Balancers -- DEFAULT
Info: LDB PERIOD 4000 steps
Info: FIRST LDB TIMESTEP 100
Info: LAST LDB TIMESTEP -1
Info: LDB BACKGROUND SCALING 1
Info: HOM BACKGROUND SCALING 1
Info: PME BACKGROUND SCALING 1
Info: MIN ATOMS PER PATCH 40
Info: INITIAL TEMPERATURE 300
Info: CENTER OF MASS MOVING INITIALLY? NO
Info: DIELECTRIC 1
Info: EXCLUDE SCALED ONE-FOUR
Info: 1-4 ELECTROSTATICS SCALED BY 1
Info: MODIFIED 1-4 VDW PARAMETERS WILL BE USED
Info: NO DCD TRAJECTORY OUTPUT
Info: NO EXTENDED SYSTEM TRAJECTORY OUTPUT
Info: NO VELOCITY DCD OUTPUT
Info: NO FORCE DCD OUTPUT
Info: OUTPUT FILENAME /usr/tmp/apoa1-out
Info: BINARY OUTPUT FILES WILL BE USED
Info: NO RESTART FILE
Info: SWITCHING ACTIVE
Info: SWITCHING ON 10
Info: SWITCHING OFF 12
Info: PAIRLIST DISTANCE 13.5
Info: PAIRLIST SHRINK RATE 0.01
Info: PAIRLIST GROW RATE 0.01
Info: PAIRLIST TRIGGER 0.3
Info: PAIRLISTS PER CYCLE 2
Info: PAIRLISTS ENABLED
Info: MARGIN 0
Info: HYDROGEN GROUP CUTOFF 2.5
Info: PATCH DIMENSION 16
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: TIMING OUTPUT STEPS 20
Info: PARTICLE MESH EWALD (PME) ACTIVE
Info: PME TOLERANCE 1e-06
Info: PME EWALD COEFFICIENT 0.257952
Info: PME INTERPOLATION ORDER 4
Info: PME GRID DIMENSIONS 108 108 80
Info: PME MAXIMUM GRID SPACING 1.5
Info: Attempting to read FFTW data from system
Info: Attempting to read FFTW data from FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: Optimizing 6 FFT steps. 1... 2... 3... 4... 5... 6... Done.
Info: Writing FFTW data to FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: FULL ELECTROSTATIC EVALUATION FREQUENCY 4
Info: USING VERLET I (r-RESPA) MTS SCHEME.
Info: C1 SPLITTING OF LONG RANGE ELECTROSTATICS
Info: PLACING ATOMS IN PATCHES BY HYDROGEN GROUPS
Info: RANDOM NUMBER SEED 74269
Info: USE HYDROGEN BONDS? NO
Info: COORDINATE PDB apoa1.pdb
Info: STRUCTURE FILE apoa1.psf
Info: PARAMETER file: XPLOR format! (default)
Info: PARAMETERS par_all22_prot_lipid.xplor
Info: PARAMETERS par_all22_popc.xplor
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.80679
Info: TIME FOR READING PDB FILE: 0.371537
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.18635 s, 3129.61 MB of memory in use
Info: Startup phase 0 took 0.000208248 s, 3129.61 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.198859 s, 3151.62 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101276 s, 3151.62 MB of memory in use
Info: Startup phase 3 took 0.000139422 s, 3151.62 MB of memory in use
Info: Startup phase 4 took 0.000386154 s, 3151.62 MB of memory in use
Info: Startup phase 5 took 0.000120661 s, 3151.62 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0450697 s, 3170.2 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.414873 s, 3170.2 MB of memory in use
Info: Startup phase 8 took 0.00752093 s, 3178.2 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000495672 s, 3178.2 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00573001 s, 3178.2 MB of memory in use
Info: Startup phase 11 took 0.000231464 s, 3178.2 MB of memory in use
Info: Startup phase 12 took 0.000218192 s, 3178.2 MB of memory in use
Info: Finished startup at 6.86121 s, 3178.2 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8938 24849.5776 0.0000 0.0000 58070.8721 -222575.0713 211.2459 -280645.9434 -223447.0520 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2976 25088.6262 0.0000 0.0000 59867.7845 -223079.1303 217.7825 -282946.9148 -223360.7366 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2218 25459.6294 0.0000 0.0000 52507.9934 -222544.6643 191.0096 -275052.6577 -223356.7147 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0125 25887.6534 0.0000 0.0000 42953.1287 -221679.2678 156.2517 -264632.3965 -223352.8549 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3012 26266.0174 0.0000 0.0000 42465.0707 -221790.4530 154.4763 -264255.5237 -223296.4332 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9404 26591.7245 0.0000 0.0000 50541.8171 -222627.2006 183.8572 -273169.0177 -223230.8088 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2673 26963.6414 0.0000 0.0000 55373.6415 -223162.5382 201.4341 -278536.1797 -223232.0105 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0267 27435.0793 0.0000 0.0000 49899.6949 -222651.4171 181.5214 -272551.1120 -223231.3830 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
ENERGY: 12 26285.2529 18611.6925 5237.4073 254.5717 -340969.2133 27945.8074 0.0000 0.0000 40727.6954 -221906.7861 148.1562 -262634.4815 -223172.5614 148.1562 -1887.2027 -1155.3187 921491.4634 -1887.2027 -1155.3187
ENERGY: 13 25810.1550 20340.2227 5243.3633 239.3557 -340247.5483 28408.4744 0.0000 0.0000 38364.5171 -221841.4601 139.5596 -260205.9772 -223110.9488 139.5596 -1878.7367 -948.4511 921491.4634 -1878.7367 -948.4511
ENERGY: 14 18229.5293 21618.1813 5255.0116 219.9345 -339811.4722 28840.3575 0.0000 0.0000 43120.5707 -222527.8873 156.8608 -265648.4580 -223112.7585 156.8608 -1024.8387 -790.0064 921491.4634 -1024.8387 -790.0064
ENERGY: 15 14141.3260 21914.0174 5270.4562 198.4604 -339999.9011 29330.1986 0.0000 0.0000 46274.3874 -222871.0550 168.3335 -269145.4425 -223114.1848 168.3335 -276.1129 -654.0185 921491.4634 -276.1129 -654.0185
ENERGY: 16 18533.5985 21379.4766 5286.3853 177.1317 -341073.7438 29909.1296 0.0000 0.0000 43310.7888 -222477.2332 157.5527 -265788.0221 -223107.6652 157.5527 -215.9503 -534.2016 921491.4634 -215.9503 -534.2016
ENERGY: 17 24285.5817 20685.3759 5300.2791 158.0483 -342718.3075 30497.9364 0.0000 0.0000 39857.6662 -221933.4200 144.9912 -261791.0862 -223067.7881 144.9912 -418.5180 -445.9262 921491.4634 -418.5180 -445.9262
ENERGY: 18 23242.4117 20468.5288 5310.2672 142.6286 -344641.7090 31004.0211 0.0000 0.0000 42309.0086 -222164.8430 153.9085 -264473.8516 -223068.8514 153.9085 -264.8021 -408.6302 921491.4634 -264.8021 -408.6302
ENERGY: 19 18143.9400 20989.5296 5316.6991 131.8194 -346529.5496 31434.4322 0.0000 0.0000 47714.3022 -222798.8270 173.5715 -270513.1292 -223071.3655 173.5715 41.9014 -392.2664 921491.4634 41.9014 -392.2664
LDB: ============= START OF LOAD BALANCING ============== 16.3791
LDB: ============== END OF LOAD BALANCING =============== 16.3792
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 16.3797
TIMING: 20 CPU: 10.447, 0.473988/step Wall: 10.447, 0.473988/step, 0.0631985 hours remaining, 3219.699219 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 20 17965.5059 22054.9968 5321.8173 125.9640 -348206.1515 31862.6111 0.0000 0.0000 47960.4282 -222914.8282 174.4669 -270875.2563 -223082.7606 174.4669 -133.8116 -346.5459 921491.4634 -133.8116 -346.5459
ENERGY: 21 24039.1424 23261.1505 5329.8150 124.9653 -349366.5698 32291.6370 0.0000 0.0000 42039.3837 -222280.4759 152.9277 -264319.8595 -223063.1337 152.9277 -740.3955 -247.6204 921491.4634 -740.3955 -247.6204
ENERGY: 22 27739.0451 24128.7772 5344.8281 128.0343 -349763.5537 32625.8383 0.0000 0.0000 37948.0934 -221848.9372 138.0447 -259797.0306 -223062.3007 138.0447 -901.2301 -130.9898 921491.4634 -901.2301 -130.9898
ENERGY: 23 23247.6166 24272.4991 5370.4269 134.1642 -349332.6447 32798.0362 0.0000 0.0000 41280.9383 -222228.9633 150.1687 -263509.9016 -223063.4052 150.1687 -121.6534 -27.8474 921491.4634 -121.6534 -27.8474
ENERGY: 24 16511.8017 23459.5973 5407.7262 142.1780 -348420.3087 32880.6042 0.0000 0.0000 47144.4571 -222873.9442 171.4986 -270018.4013 -223056.8661 171.4986 942.5310 70.4533 921491.4634 942.5310 70.4533
ENERGY: 25 16917.9802 21778.2434 5454.8988 151.0023 -347594.2602 32989.6205 0.0000 0.0000 47486.3029 -222816.2121 172.7421 -270302.5150 -223053.2178 172.7421 1272.0519 195.5279 921491.4634 1272.0519 195.5279
ENERGY: 26 23581.2555 19675.3687 5506.8492 159.5877 -347249.8435 33136.3761 0.0000 0.0000 43029.5317 -222160.8745 156.5296 -265190.4062 -223051.5347 156.5296 769.4264 319.1965 921491.4634 769.4264 319.1965
ENERGY: 27 26456.6584 17946.7066 5557.4986 167.2901 -347403.8184 33225.3823 0.0000 0.0000 42147.2260 -221903.0566 153.3200 -264050.2825 -223051.1655 153.3200 220.6605 393.1594 921491.4634 220.6605 393.1594
ENERGY: 28 21041.4522 17329.1339 5601.2360 173.7564 -347813.2805 33197.2135 0.0000 0.0000 47975.5933 -222494.8953 174.5220 -270470.4886 -223001.5672 174.5220 79.1066 399.7476 921491.4634 79.1066 399.7476
ENERGY: 29 15396.3270 18061.9472 5634.3634 178.8635 -348340.9353 33114.0513 0.0000 0.0000 52817.3032 -223138.0796 192.1348 -275955.3829 -223013.8477 192.1348 -116.7881 392.2540 921491.4634 -116.7881 392.2540
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 30 18751.3177 19659.9906 5655.0732 182.5488 -348790.2987 33060.9284 0.0000 0.0000 48617.0318 -222863.4082 176.8554 -271480.4400 -223014.4701 176.8554 -820.6934 415.3193 921491.4634 -820.6934 415.3193
ENERGY: 31 27694.5952 21259.1819 5664.2790 184.9293 -348929.5884 33008.3021 0.0000 0.0000 39136.7131 -221981.5877 142.3686 -261118.3008 -223012.7194 142.3686 -1451.9808 460.8912 921491.4634 -1451.9808 460.8912
ENERGY: 32 30068.2854 22087.7452 5665.1959 186.2529 -348469.1899 32843.5147 0.0000 0.0000 35956.7802 -221661.4157 130.8009 -257618.1959 -222879.6158 130.8009 -898.8256 477.0668 921491.4634 -898.8256 477.0668
ENERGY: 33 21814.4413 21866.1207 5662.7076 186.8472 -347503.8045 32533.7071 0.0000 0.0000 43073.5125 -222366.4680 156.6896 -265439.9806 -222875.1212 156.6896 944.3631 439.8050 921491.4634 944.3631 439.8050
ENERGY: 34 13147.3108 20822.2763 5661.3995 187.1344 -346393.9750 32190.4000 0.0000 0.0000 51261.5111 -223123.9429 186.4753 -274385.4541 -222873.5744 186.4753 2726.2719 368.4769 921491.4634 2726.2719 368.4769
ENERGY: 35 14939.6596 19533.2380 5664.6046 187.4826 -345707.8423 31926.7432 0.0000 0.0000 50536.7216 -222919.3927 183.8387 -273456.1143 -222870.5852 183.8387 3009.1612 277.1950 921491.4634 3009.1612 277.1950
ENERGY: 36 23992.4071 18619.4976 5673.2513 188.1412 -345737.5533 31727.7259 0.0000 0.0000 43465.0627 -222071.4676 158.1140 -265536.5302 -222792.6596 158.1140 1784.3269 140.1452 921491.4634 1784.3269 140.1452
ENERGY: 37 27662.2270 18555.9996 5686.0165 189.1736 -346400.2313 31489.4429 0.0000 0.0000 41035.8278 -221781.5439 149.2771 -262817.3717 -222776.0504 149.2771 189.9686 -80.8845 921491.4634 189.9686 -80.8845
ENERGY: 38 21417.9356 19485.8051 5699.4394 190.5896 -347297.8747 31169.4569 0.0000 0.0000 46867.8924 -222466.7557 170.4925 -269334.6480 -222782.6196 170.4925 -1003.8463 -364.7808 921491.4634 -1003.8463 -364.7808
ENERGY: 39 14905.2239 21194.3324 5709.6116 192.2159 -348062.9360 30838.9348 0.0000 0.0000 52072.4157 -223150.2018 189.4251 -275222.6175 -222787.6441 189.4251 -2066.3976 -633.0732 921491.4634 -2066.3976 -633.0732
TIMING: 40 CPU: 19.9259, 0.473946/step Wall: 19.9259, 0.473946/step, 0.0605598 hours remaining, 3220.589844 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 40 18175.3607 23091.9465 5712.9374 193.7351 -348398.4384 30569.2891 0.0000 0.0000 47793.1195 -222862.0501 173.8582 -270655.1696 -222794.4437 173.8582 -3285.9429 -815.4643 921491.4634 -3285.9429 -815.4643
ENERGY: 41 27454.8770 24388.3754 5707.1933 194.7033 -347996.2242 30319.6952 0.0000 0.0000 37998.4752 -221932.9048 138.2280 -259931.3800 -222755.1648 138.2280 -3958.3725 -910.5637 921491.4634 -3958.3725 -910.5637
ENERGY: 42 30245.9366 24360.9625 5691.6440 194.6822 -346664.6375 29990.2515 0.0000 0.0000 34554.7186 -221626.4420 125.7006 -256181.1606 -222751.8056 125.7006 -2976.0494 -957.7117 921491.4634 -2976.0494 -957.7117
ENERGY: 43 22419.9627 22840.1581 5668.3987 193.3183 -344561.3429 29565.6875 0.0000 0.0000 41572.6525 -222301.1651 151.2299 -263873.8176 -222749.5270 151.2299 -409.4030 -982.8642 921491.4634 -409.4030 -982.8642
ENERGY: 44 13688.4096 20366.1989 5642.0670 190.5057 -342301.7068 29147.7409 0.0000 0.0000 50206.1687 -223060.6159 182.6362 -273266.7846 -222789.1128 182.6362 2147.6094 -988.8248 921491.4634 2147.6094 -988.8248
ENERGY: 45 14321.4099 17966.5588 5618.8540 186.4749 -340529.7788 28826.5124 0.0000 0.0000 50723.4105 -222886.5583 184.5178 -273609.9688 -222752.6209 184.5178 3021.8265 -984.7720 921491.4634 3021.8265 -984.7720
ENERGY: 46 21810.6588 16543.1498 5604.0209 181.6747 -339671.2259 28584.9900 0.0000 0.0000 44777.2512 -222169.4806 162.8873 -266946.7317 -222751.4825 162.8873 1989.9578 -1018.5225 921491.4634 1989.9578 -1018.5225
ENERGY: 47 25437.8369 16504.7275 5601.0153 176.7222 -339657.9451 28339.0468 0.0000 0.0000 41682.3532 -221916.2433 151.6289 -263598.5965 -222754.8498 151.6289 54.8289 -1124.4910 921491.4634 54.8289 -1124.4910
ENERGY: 48 21357.5060 17642.4096 5610.4033 172.2811 -340167.0771 28053.2905 0.0000 0.0000 44880.0446 -222451.1419 163.2613 -267331.1865 -222747.8062 163.2613 -1888.5356 -1283.7456 921491.4634 -1888.5356 -1283.7456
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 60 CPU: 29.3949, 0.473449/step Wall: 29.3949, 0.473449/step, 0.057866 hours remaining, 3220.964844 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 80 CPU: 38.85, 0.472757/step Wall: 38.85, 0.472757/step, 0.0551549 hours remaining, 3221.195312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 54.2367
LDB: Largest compute 200 load 0.429880 is 1.2% of average load 36.770557
LDB: Average compute 0.051513 is 0.1% of average load 36.770557
LDB: Partitioning computes with target load 3.677056
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.055424
LDB: ============== END OF LOAD BALANCING =============== 54.2388
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.2396
Info: Initial time: 4 CPUs 0.473249 s/step 5.47742 days/ns 3221.51 MB memory
TIMING: 100 CPU: 48.2958, 0.472292/step Wall: 48.2958, 0.472292/step, 0.0524769 hours remaining, 3221.511719 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 180 CPU: 85.9499, 0.469852/step Wall: 85.9499, 0.469852/step, 0.0417646 hours remaining, 3222.160156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 101.295
LDB: Largest compute 200 load 0.424514 is 1.2% of average load 36.595565
LDB: Average compute 0.051261 is 0.1% of average load 36.595565
LDB: TIME 101.297 LOAD: AVG 36.5956 MAX 37.6292 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.52 MB
LDB: TIME 101.299 LOAD: AVG 36.5956 MAX 37.4692 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.52 MB
LDB: ============== END OF LOAD BALANCING =============== 101.301
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.304
Info: Initial time: 4 CPUs 0.470494 s/step 5.44553 days/ns 3223.61 MB memory
TIMING: 200 CPU: 95.355, 0.470256/step Wall: 95.355, 0.470256/step, 0.039188 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 220 CPU: 104.759, 0.470188/step Wall: 104.759, 0.470188/step, 0.0365701 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 240 CPU: 114.154, 0.469747/step Wall: 114.154, 0.469747/step, 0.0339262 hours remaining, 3223.605469 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 260 CPU: 123.538, 0.469237/step Wall: 123.538, 0.469237/step, 0.0312825 hours remaining, 3223.910156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 280 CPU: 132.911, 0.468634/step Wall: 132.911, 0.468634/step, 0.0286388 hours remaining, 3223.910156 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 148.252
LDB: Largest compute 200 load 0.520155 is 1.1% of average load 45.729402
LDB: Average compute 0.064059 is 0.1% of average load 45.729402
LDB: TIME 148.254 LOAD: AVG 45.7294 MAX 46.9435 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.27 MB
LDB: TIME 148.255 LOAD: AVG 45.7294 MAX 46.9435 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3224.27 MB
LDB: TIME 148.269 LOAD: AVG 45.7294 MAX 46.2348 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: ============== END OF LOAD BALANCING =============== 148.27
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 148.271
Info: Initial time: 4 CPUs 0.469157 s/step 5.43006 days/ns 3224.27 MB memory
TIMING: 300 CPU: 142.29, 0.46894/step Wall: 142.29, 0.46894/step, 0.0260522 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 302 21723.0647 20395.7909 5720.2599 184.8676 -337483.0153 22416.9294 0.0000 0.0000 44599.2671 -222442.8358 162.2399 -267042.1029 -222057.3397 162.2399 -3958.8649 -2554.2736 921491.4634 -3958.8649 -2554.2736
ENERGY: 303 21512.5327 20430.0802 5712.5285 185.2198 -336784.9550 22409.2050 0.0000 0.0000 44154.6910 -222380.6977 160.6226 -266535.3887 -222054.2086 160.6226 -2717.2718 -2487.9821 921491.4634 -2717.2718 -2487.9821
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 310 21508.7278 19421.0239 5732.7586 183.9063 -336693.8607 22505.8457 0.0000 0.0000 44871.0065 -222470.5919 163.2284 -267341.5985 -222052.4934 163.2284 -4424.6316 -2515.2223 921491.4634 -4424.6316 -2515.2223
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ENERGY: 312 21894.2738 19475.0868 5727.0397 182.9546 -336390.8677 22507.7150 0.0000 0.0000 44171.5549 -222432.2430 160.6840 -266603.7978 -222064.5091 160.6840 -4390.5736 -2479.7746 921491.4634 -4390.5736 -2479.7746
ENERGY: 313 21935.6983 19529.7471 5717.1322 182.3602 -335633.4774 22483.0131 0.0000 0.0000 43439.9888 -222345.5376 158.0227 -265785.5264 -222050.9853 158.0227 -3324.4415 -2406.1159 921491.4634 -3324.4415 -2406.1159
ENERGY: 314 20774.0372 19507.1857 5704.6248 181.6523 -334801.1002 22445.5165 0.0000 0.0000 43813.5134 -222374.5704 159.3815 -266188.0837 -222048.2690 159.3815 -1862.2382 -2326.9766 921491.4634 -1862.2382 -2326.9766
ENERGY: 315 19161.1203 19408.2596 5692.2116 180.8666 -334233.4698 22410.8358 0.0000 0.0000 44907.4425 -222472.7334 163.3609 -267380.1759 -222046.1396 163.3609 -549.3940 -2270.2360 921491.4634 -549.3940 -2270.2360
ENERGY: 316 18669.4290 19303.6207 5682.5270 180.0732 -334172.3639 22398.3990 0.0000 0.0000 45428.4346 -222509.8804 165.2562 -267938.3149 -222062.0708 165.2562 64.5864 -2251.8059 921491.4634 64.5864 -2251.8059
ENERGY: 317 19739.5964 19309.4452 5677.5265 179.4130 -334705.9333 22416.0670 0.0000 0.0000 44959.2152 -222424.6700 163.5493 -267383.8853 -222046.6267 163.5493 -296.1487 -2282.4173 921491.4634 -296.1487 -2282.4173
ENERGY: 318 21109.3875 19471.3042 5677.4840 178.9393 -335675.6972 22454.1810 0.0000 0.0000 44425.4198 -222358.9816 161.6075 -266784.4013 -222048.7803 161.6075 -1378.4199 -2356.1401 921491.4634 -1378.4199 -2356.1401
ENERGY: 319 21567.4386 19787.0342 5681.4413 178.7485 -336801.6066 22496.5475 0.0000 0.0000 44691.1805 -222399.2160 162.5742 -267090.3966 -222051.9248 162.5742 -2725.8798 -2457.2025 921491.4634 -2725.8798 -2457.2025
TIMING: 320 CPU: 151.502, 0.460583/step Wall: 151.502, 0.460583/step, 0.0230292 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 320 21393.3838 20196.2689 5687.3971 178.9168 -337738.1158 22532.5476 0.0000 0.0000 45250.4874 -222499.1142 164.6088 -267749.6016 -222076.2069 164.6088 -3895.6023 -2553.5001 921491.4634 -3895.6023 -2553.5001
ENERGY: 321 21615.1674 20628.0217 5693.0806 179.5146 -338181.7102 22557.3347 0.0000 0.0000 45018.7804 -222489.8108 163.7660 -267508.5912 -222064.2786 163.7660 -4609.2360 -2621.5362 921491.4634 -4609.2360 -2621.5362
ENERGY: 322 22179.0069 20957.0456 5696.1855 180.4970 -337965.9628 22565.0704 0.0000 0.0000 43989.5239 -222398.6335 160.0218 -266388.1574 -222063.6574 160.0218 -4596.8829 -2640.5012 921491.4634 -4596.8829 -2640.5012
ENERGY: 323 21976.7005 21085.8080 5695.4505 181.8003 -337194.0743 22550.8104 0.0000 0.0000 43361.4902 -222342.0144 157.7372 -265703.5045 -222061.4463 157.7372 -3808.3605 -2616.6943 921491.4634 -3808.3605 -2616.6943
ENERGY: 324 20558.5068 20952.0214 5690.8581 183.3007 -336170.3969 22520.5742 0.0000 0.0000 43857.2498 -222407.8859 159.5406 -266265.1357 -222068.7478 159.5406 -2506.6897 -2573.6929 921491.4634 -2506.6897 -2573.6929
ENERGY: 325 19096.1751 20584.7378 5683.7432 184.8442 -335297.0507 22494.0545 0.0000 0.0000 44763.3953 -222490.1006 162.8369 -267253.4959 -222060.9508 162.8369 -1264.0242 -2529.6544 921491.4634 -1264.0242 -2529.6544
ENERGY: 326 18959.6359 20052.8005 5675.9627 186.2078 -334820.0099 22490.4170 0.0000 0.0000 44971.8223 -222483.1638 163.5951 -267454.9861 -222059.6105 163.5951 -572.2139 -2503.0556 921491.4634 -572.2139 -2503.0556
ENERGY: 327 20020.7818 19506.2795 5669.7116 187.2139 -334851.2526 22513.0147 0.0000 0.0000 44550.7426 -222403.5085 162.0634 -266954.2512 -222059.8756 162.0634 -657.4988 -2506.5012 921491.4634 -657.4988 -2506.5012
ENERGY: 328 20934.1978 19092.0093 5666.7484 187.7399 -335303.4712 22549.7454 0.0000 0.0000 44493.2357 -222379.7948 161.8542 -266873.0304 -222061.7258 161.8542 -1393.2038 -2547.3518 921491.4634 -1393.2038 -2547.3518
ENERGY: 329 21066.6666 18910.0877 5668.0553 187.7546 -335996.4129 22586.9567 0.0000 0.0000 45124.3166 -222452.5754 164.1499 -267576.8920 -222059.3366 164.1499 -2499.2291 -2610.9952 921491.4634 -2499.2291 -2610.9952
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 330 21142.6835 18933.5043 5673.1988 187.2569 -336566.3121 22617.7581 0.0000 0.0000 45495.0148 -222516.8957 165.4984 -268011.9104 -222062.1150 165.4984 -3602.9591 -2673.3212 921491.4634 -3602.9591 -2673.3212
ENERGY: 331 21864.6856 19091.0592 5680.9136 186.3262 -336735.1755 22637.2716 0.0000 0.0000 44806.2165 -222468.7028 162.9927 -267274.9194 -222063.3971 162.9927 -4373.7649 -2707.8811 921491.4634 -4373.7649 -2707.8811
ENERGY: 332 22513.8607 19292.8541 5689.3391 185.0892 -336383.5024 22636.4046 0.0000 0.0000 43697.6288 -222368.3259 158.9600 -266065.9547 -222061.8459 158.9600 -4514.5071 -2704.7030 921491.4634 -4514.5071 -2704.7030
ENERGY: 333 21854.9976 19482.7897 5696.6505 183.7309 -335681.4584 22608.9731 0.0000 0.0000 43501.2419 -222353.0746 158.2456 -265854.3165 -222052.0750 158.2456 -3943.3086 -2666.2161 921491.4634 -3943.3086 -2666.2161
ENERGY: 334 20023.4850 19603.2613 5701.0454 182.3864 -334880.5301 22564.8644 0.0000 0.0000 44357.3052 -222448.1823 161.3597 -266805.4875 -222049.6958 161.3597 -2855.3037 -2607.1876 921491.4634 -2855.3037 -2607.1876
ENERGY: 335 18726.9582 19647.0447 5701.6423 181.1975 -334325.9454 22528.7347 0.0000 0.0000 45026.6266 -222513.7412 163.7945 -267540.3679 -222047.5430 163.7945 -1753.1267 -2542.6963 921491.4634 -1753.1267 -2542.6963
ENERGY: 336 19127.9132 19639.0992 5698.6022 180.2744 -334271.7853 22519.6999 0.0000 0.0000 44649.6651 -222456.5313 162.4232 -267106.1964 -222055.6199 162.4232 -1093.5003 -2488.8701 921491.4634 -1093.5003 -2488.8701
ENERGY: 337 20420.1632 19649.7060 5693.3319 179.7347 -334824.3556 22536.4224 0.0000 0.0000 43995.6000 -222349.3974 160.0439 -266344.9974 -222040.1022 160.0439 -1064.7181 -2460.5859 921491.4634 -1064.7181 -2460.5859
ENERGY: 338 21007.5746 19722.4641 5687.5590 179.5437 -335808.8619 22564.1946 0.0000 0.0000 44285.9174 -222361.6086 161.1000 -266647.5259 -222041.5955 161.1000 -1500.9498 -2462.8575 921491.4634 -1500.9498 -2462.8575
ENERGY: 339 20742.6012 19892.4863 5683.2969 179.6501 -336924.5160 22593.0219 0.0000 0.0000 45359.3479 -222474.1117 165.0048 -267833.4595 -222043.8627 165.0048 -2199.9376 -2485.1214 921491.4634 -2199.9376 -2485.1214
TIMING: 340 CPU: 160.707, 0.460285/step Wall: 160.707, 0.460285/step, 0.0204571 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 340 20898.6069 20139.5372 5681.9995 179.9655 -337821.3680 22621.7138 0.0000 0.0000 45758.5729 -222540.9721 166.4571 -268299.5450 -222070.3949 166.4571 -2966.9710 -2503.9484 921491.4634 -2966.9710 -2503.9484
ENERGY: 341 22051.8627 20407.8963 5684.3134 180.4786 -338209.1664 22646.3200 0.0000 0.0000 44797.5820 -222440.7133 162.9613 -267238.2953 -222054.5343 162.9613 -3585.3815 -2498.5442 921491.4634 -3585.3815 -2498.5442
ENERGY: 342 22895.9214 20582.1013 5689.2419 181.0293 -337942.4472 22653.2573 0.0000 0.0000 43612.4988 -222328.3971 158.6503 -265940.8959 -222054.3598 158.6503 -3711.7547 -2460.9855 921491.4634 -3711.7547 -2460.9855
ENERGY: 343 21993.5595 20596.8908 5695.1198 181.5548 -337132.3415 22633.1275 0.0000 0.0000 43686.5573 -222345.5318 158.9197 -266032.0891 -222053.2444 158.9197 -3217.8262 -2399.3475 921491.4634 -3217.8262 -2399.3475
ENERGY: 344 19898.5079 20447.2069 5699.9573 182.0106 -336095.2675 22596.5930 0.0000 0.0000 44790.9362 -222480.0556 162.9371 -267270.9918 -222071.3575 162.9371 -2338.1158 -2329.7492 921491.4634 -2338.1158 -2329.7492
ENERGY: 345 18694.7357 20199.0883 5702.3270 182.4513 -335224.1273 22568.7538 0.0000 0.0000 45351.4660 -222525.3052 164.9762 -267876.7712 -222058.0552 164.9762 -1576.2388 -2261.7960 921491.4634 -1576.2388 -2261.7960
ENERGY: 346 19350.9888 19892.9543 5701.0894 182.7368 -334783.0721 22565.1339 0.0000 0.0000 44652.5020 -222437.6670 162.4335 -267090.1689 -222056.8252 162.4335 -1239.3020 -2211.7781 921491.4634 -1239.3020 -2211.7781
ENERGY: 347 20669.8294 19583.9410 5696.3949 182.8447 -334881.4386 22581.1984 0.0000 0.0000 43831.1329 -222336.0972 159.4456 -266167.2301 -222056.9470 159.4456 -1358.8145 -2194.9212 921491.4634 -1358.8145 -2194.9212
ENERGY: 348 21062.2472 19315.9903 5689.3479 182.7918 -335425.6669 22604.2203 0.0000 0.0000 44195.9877 -222375.0816 160.7729 -266571.0693 -222064.0944 160.7729 -1766.2767 -2218.9157 921491.4634 -1766.2767 -2218.9157
ENERGY: 349 20718.9517 19143.3232 5681.9007 182.6959 -336197.3784 22630.4376 0.0000 0.0000 45349.6296 -222490.4396 164.9695 -267840.0692 -222056.3105 164.9695 -2336.6409 -2270.6250 921491.4634 -2336.6409 -2270.6250
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 350 21009.3453 19066.8677 5675.7227 182.5405 -336836.8357 22661.9756 0.0000 0.0000 45710.0737 -222530.3102 166.2807 -268240.3839 -222058.0872 166.2807 -2896.5511 -2326.8868 921491.4634 -2896.5511 -2326.8868
ENERGY: 351 22235.3181 19085.8716 5672.3993 182.3762 -337072.3449 22693.2959 0.0000 0.0000 44770.4137 -222432.6700 162.8625 -267203.0837 -222058.6352 162.8625 -3254.0188 -2369.0508 921491.4634 -3254.0188 -2369.0508
ENERGY: 352 22912.9249 19180.1284 5672.7329 182.2243 -336794.7858 22708.6921 0.0000 0.0000 43795.3993 -222342.6838 159.3156 -266138.0831 -222059.3894 159.3156 -3190.0137 -2394.0289 921491.4634 -3190.0137 -2394.0289
ENERGY: 353 21825.9775 19344.0939 5676.6445 182.1014 -336147.6549 22699.4234 0.0000 0.0000 44043.1857 -222376.2287 160.2170 -266419.4144 -222047.6759 160.2170 -2709.1540 -2407.4663 921491.4634 -2709.1540 -2407.4663
ENERGY: 354 19814.0380 19544.5092 5682.7360 181.9868 -335375.1822 22676.8667 0.0000 0.0000 44983.0759 -222491.9695 163.6361 -267475.0454 -222046.2238 163.6361 -2040.9896 -2415.4741 921491.4634 -2040.9896 -2415.4741
ENERGY: 355 18879.8416 19773.7508 5689.2466 181.9196 -334823.9954 22664.4421 0.0000 0.0000 45120.2681 -222514.5267 164.1351 -267634.7948 -222044.8378 164.1351 -1600.3166 -2424.6826 921491.4634 -1600.3166 -2424.6826
ENERGY: 356 19622.4370 20015.8108 5694.4280 181.9402 -334758.7691 22674.4079 0.0000 0.0000 44153.0889 -222416.6562 160.6168 -266569.7451 -222053.0959 160.6168 -1622.0261 -2446.8266 921491.4634 -1622.0261 -2446.8266
ENERGY: 357 20687.2713 20255.1054 5697.1707 182.0215 -335288.0646 22700.2949 0.0000 0.0000 43438.0181 -222328.1828 158.0156 -265766.2009 -222042.2327 158.0156 -2061.3606 -2486.6663 921491.4634 -2061.3606 -2486.6663
ENERGY: 358 20785.4069 20424.8429 5696.9832 182.1295 -336225.9481 22730.2418 0.0000 0.0000 44019.5825 -222386.7613 160.1311 -266406.3438 -222043.9942 160.1311 -2636.8582 -2541.3593 921491.4634 -2636.8582 -2541.3593
ENERGY: 359 20493.6444 20484.4985 5694.4424 182.1894 -337270.5931 22762.0667 0.0000 0.0000 45152.8981 -222500.8537 164.2538 -267653.7517 -222046.0999 164.2538 -3161.2180 -2593.4281 921491.4634 -3161.2180 -2593.4281
TIMING: 360 CPU: 169.904, 0.459852/step Wall: 169.904, 0.459852/step, 0.0178831 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 360 21112.5814 20418.0335 5690.9151 182.1442 -338077.5509 22797.1677 0.0000 0.0000 45362.4570 -222514.2519 165.0162 -267876.7089 -222065.3872 165.0162 -3505.9505 -2622.8571 921491.4634 -3505.9505 -2622.8571
ENERGY: 361 22462.8276 20259.6928 5688.3191 181.9496 -338397.1525 22827.2220 0.0000 0.0000 44580.8522 -222396.2893 162.1729 -266977.1415 -222052.4536 162.1729 -3542.5443 -2618.5018 921491.4634 -3542.5443 -2618.5018
ENERGY: 362 22808.6002 20031.2791 5688.3203 181.6678 -338079.7611 22835.7525 0.0000 0.0000 44200.9553 -222333.1857 160.7909 -266534.1411 -222051.2753 160.7909 -3087.0696 -2583.1905 921491.4634 -3087.0696 -2583.1905
ENERGY: 363 21303.6020 19794.1189 5692.1162 181.3427 -337235.0087 22818.0651 0.0000 0.0000 45033.6628 -222412.1010 163.8201 -267445.7638 -222049.5296 163.8201 -2242.6817 -2529.7064 921491.4634 -2242.6817 -2529.7064
ENERGY: 364 19323.8974 19612.6014 5699.8913 181.0103 -336175.1991 22790.5192 0.0000 0.0000 46034.3491 -222532.9305 167.4603 -268567.2795 -222068.5910 167.4603 -1420.0420 -2476.3755 921491.4634 -1420.0420 -2476.3755
ENERGY: 365 18830.5838 19548.3420 5710.7558 180.6856 -335316.0961 22775.7829 0.0000 0.0000 45760.0891 -222509.8569 166.4626 -268269.9460 -222057.4394 166.4626 -1100.2602 -2433.4821 921491.4634 -1100.2602 -2433.4821
ENERGY: 366 19854.2637 19578.5648 5722.5902 180.3919 -334923.1922 22780.3500 0.0000 0.0000 44422.2475 -222384.7841 161.5959 -266807.0316 -222057.2769 161.5959 -1392.6922 -2417.6861 921491.4634 -1392.6922 -2417.6861
ENERGY: 367 20741.0596 19662.8833 5732.9484 180.1165 -335098.3152 22794.3493 0.0000 0.0000 43662.6188 -222324.3392 158.8326 -265986.9581 -222058.3705 158.8326 -2104.1271 -2437.9267 921491.4634 -2104.1271 -2437.9267
ENERGY: 368 20561.5940 19748.2119 5739.6691 179.8275 -335728.0873 22808.6651 0.0000 0.0000 44272.8410 -222417.2788 161.0524 -266690.1198 -222068.2907 161.0524 -2928.4887 -2487.3070 921491.4634 -2928.4887 -2487.3070
ENERGY: 369 20346.9681 19812.6205 5741.6369 179.5048 -336580.3308 22825.3357 0.0000 0.0000 45155.6312 -222518.6336 164.2638 -267674.2647 -222061.0996 164.2638 -3666.9893 -2542.4574 921491.4634 -3666.9893 -2542.4574
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 370 21302.3709 19815.7282 5738.6027 179.1429 -337296.0554 22846.3048 0.0000 0.0000 44920.4947 -222493.4112 163.4084 -267413.9059 -222062.2621 163.4084 -4081.4438 -2576.8189 921491.4634 -4081.4438 -2576.8189
ENERGY: 371 22799.2774 19758.4807 5731.5881 178.8004 -337606.4369 22861.3508 0.0000 0.0000 43904.8965 -222372.0429 159.7139 -266276.9394 -222061.9334 159.7139 -3956.1481 -2578.2817 921491.4634 -3956.1481 -2578.2817
ENERGY: 372 22964.3599 19665.2848 5722.4283 178.5955 -337391.7868 22854.0834 0.0000 0.0000 43672.6560 -222334.3788 158.8691 -266007.0348 -222060.3192 158.8691 -3189.3383 -2552.6174 921491.4634 -3189.3383 -2552.6174
ENERGY: 373 21253.1598 19603.3414 5713.4759 178.7080 -336784.3110 22822.4878 0.0000 0.0000 44782.9956 -222430.1425 162.9082 -267213.1381 -222050.3111 162.9082 -2037.0649 -2511.6657 921491.4634 -2037.0649 -2511.6657
ENERGY: 374 19285.9364 19613.0716 5706.5680 179.1985 -336019.1229 22785.5045 0.0000 0.0000 45912.3287 -222536.5152 167.0164 -268448.8438 -222048.2686 167.0164 -983.4304 -2469.0311 921491.4634 -983.4304 -2469.0311
ENERGY: 375 18893.7026 19735.2390 5703.0316 180.0533 -335443.7680 22766.6830 0.0000 0.0000 45660.9728 -222504.0857 166.1021 -268165.0586 -222047.0940 166.1021 -539.4859 -2439.8662 921491.4634 -539.4859 -2439.8662
ENERGY: 376 19884.0272 19962.1760 5703.2010 181.1433 -335321.8627 22772.8697 0.0000 0.0000 44434.3283 -222384.1172 161.6399 -266818.4455 -222050.5526 161.6399 -874.6220 -2439.6903 921491.4634 -874.6220 -2439.6903
ENERGY: 377 20646.4609 20251.1589 5706.5521 182.3248 -335763.5797 22794.3770 0.0000 0.0000 43848.2761 -222334.4299 159.5080 -266182.7060 -222041.4009 159.5080 -1819.5857 -2472.4986 921491.4634 -1819.5857 -2472.4986
ENERGY: 378 20473.8101 20495.6592 5711.4639 183.2952 -336584.2276 22821.5833 0.0000 0.0000 44474.7543 -222423.6617 161.7869 -266898.4160 -222044.3963 161.7869 -2972.9874 -2523.3499 921491.4634 -2972.9874 -2523.3499
ENERGY: 379 20419.4578 20623.8789 5716.2160 183.8420 -337495.6094 22854.5149 0.0000 0.0000 45185.6420 -222512.0578 164.3729 -267697.6998 -222047.0125 164.3729 -3997.4174 -2563.3073 921491.4634 -3997.4174 -2563.3073
TIMING: 380 CPU: 179.1, 0.45978/step Wall: 179.1, 0.45978/step, 0.015326 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 380 21458.1133 20605.4119 5719.3306 183.8284 -338176.3452 22892.6525 0.0000 0.0000 44833.7908 -222483.2177 163.0930 -267317.0085 -222063.6476 163.0930 -4580.2705 -2564.2102 921491.4634 -4580.2705 -2564.2102
ENERGY: 381 22824.3129 20467.0310 5720.1164 183.2929 -338395.2410 22923.6565 0.0000 0.0000 43906.3010 -222370.5304 159.7191 -266276.8314 -222053.0343 159.7191 -4470.7199 -2514.6122 921491.4634 -4470.7199 -2514.6122
ENERGY: 382 22844.1905 20220.4985 5718.3197 182.2157 -338010.6531 22930.5468 0.0000 0.0000 43766.5304 -222348.3515 159.2106 -266114.8819 -222051.0359 159.2106 -3524.7151 -2418.5490 921491.4634 -3524.7151 -2418.5490
ENERGY: 383 21263.6993 19910.9245 5714.6670 180.7420 -337128.0224 22911.2840 0.0000 0.0000 44707.9449 -222438.7607 162.6352 -267146.7056 -222048.1876 162.6352 -2023.0803 -2294.0133 921491.4634 -2023.0803 -2294.0133
ENERGY: 384 19625.4113 19596.0353 5710.5349 179.0647 -336052.0484 22884.2528 0.0000 0.0000 45539.1838 -222517.5656 165.6590 -268056.7494 -222062.0924 165.6590 -569.2380 -2166.9360 921491.4634 -569.2380 -2166.9360
ENERGY: 385 19327.8181 19356.8911 5707.7751 177.4354 -335210.6398 22871.6138 0.0000 0.0000 45299.7175 -222469.3888 164.7879 -267769.1063 -222051.0991 164.7879 215.3514 -2064.3638 921491.4634 215.3514 -2064.3638
ENERGY: 386 19981.2274 19220.9465 5707.6637 175.9385 -334865.1814 22880.7952 0.0000 0.0000 44519.8589 -222378.7514 161.9510 -266898.6103 -222051.0436 161.9510 122.6669 -2011.2430 921491.4634 122.6669 -2011.2430
ENERGY: 387 20367.2861 19202.4845 5710.9354 174.6759 -335109.8723 22905.2738 0.0000 0.0000 44377.1818 -222372.0347 161.4320 -266749.2165 -222053.0048 161.4320 -738.9586 -2019.1691 921491.4634 -738.9586 -2019.1691
ENERGY: 388 20282.3988 19280.0168 5717.2934 173.7038 -335824.1513 22938.2895 0.0000 0.0000 44972.7763 -222459.6727 163.5986 -267432.4490 -222067.4814 163.5986 -2063.8555 -2076.2822 921491.4634 -2063.8555 -2076.2822
ENERGY: 389 20685.9715 19431.2565 5725.6290 173.0778 -336772.2798 22978.5914 0.0000 0.0000 45279.3794 -222498.3742 164.7139 -267777.7536 -222059.2961 164.7139 -3501.7342 -2158.1993 921491.4634 -3501.7342 -2158.1993
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 390 21929.5053 19598.7448 5733.9031 172.7580 -337596.2507 23021.3357 0.0000 0.0000 44698.9838 -222441.0198 162.6026 -267140.0037 -222061.4791 162.6026 -4540.4926 -2229.7775 921491.4634 -4540.4926 -2229.7775
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LDB: ============= START OF LOAD BALANCING ============== 194.275
LDB: Largest compute 230 load 0.520764 is 1.1% of average load 45.635302
LDB: Average compute 0.063904 is 0.1% of average load 45.635302
LDB: TIME 194.277 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.27 MB
LDB: TIME 194.278 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: TIME 194.278 LOAD: AVG 45.6353 MAX 46.0042 PROXIES: TOTAL 114 MAXPE 30 MAXPATCH 2 RefineTorusLB MEM: 3224.27 MB
LDB: ============== END OF LOAD BALANCING =============== 194.278
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.279
Info: Benchmark time: 4 CPUs 0.460004 s/step 5.32412 days/ns 3224.27 MB memory
TIMING: 400 CPU: 188.294, 0.459722/step Wall: 188.294, 0.459722/step, 0.0127701 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 400 21983.9557 19981.4883 5714.2277 174.7230 -338264.6722 23090.3524 0.0000 0.0000 44890.2685 -222429.6567 163.2985 -267319.9252 -222060.6828 163.2985 -4748.6080 -2656.9999 921491.4634 -4748.6080 -2656.9999
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ENERGY: 402 22444.0479 19835.9108 5715.8942 173.8391 -338107.6281 23109.6374 0.0000 0.0000 44436.8101 -222391.4887 161.6489 -266828.2988 -222049.2223 161.6489 -4939.3796 -2681.7026 921491.4634 -4939.3796 -2681.7026
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 410 21850.5213 19470.1801 5687.6649 194.4179 -337813.1839 23106.2025 0.0000 0.0000 45077.0716 -222427.1257 163.9780 -267504.1972 -222054.6424 163.9780 -3838.6214 -2402.0241 921491.4634 -3838.6214 -2402.0241
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ENERGY: 412 22535.8951 19878.8219 5694.3233 198.8205 -338356.4968 23146.2932 0.0000 0.0000 44499.5088 -222402.8340 161.8770 -266902.3428 -222068.4596 161.8770 -4717.2140 -2436.3029 921491.4634 -4717.2140 -2436.3029
ENERGY: 413 21130.1417 20138.5247 5699.9333 199.7191 -337872.5313 23125.1113 0.0000 0.0000 45113.2145 -222465.8867 164.1095 -267579.1012 -222055.3451 164.1095 -3850.6269 -2398.9550 921491.4634 -3850.6269 -2398.9550
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ENERGY: 416 19942.3171 20661.9896 5710.0856 195.6954 -336157.5857 23063.1712 0.0000 0.0000 44200.2850 -222384.0418 160.7885 -266584.3268 -222052.9641 160.7885 -282.7613 -2224.6897 921491.4634 -282.7613 -2224.6897
ENERGY: 417 20031.3750 20631.3209 5709.0493 192.4696 -336373.1071 23072.1095 0.0000 0.0000 44338.4620 -222398.3207 161.2911 -266736.7827 -222044.6990 161.2911 -112.4554 -2227.1699 921491.4634 -112.4554 -2227.1699
ENERGY: 418 20154.6649 20457.0909 5705.5847 188.6537 -336970.7863 23098.6723 0.0000 0.0000 44915.1425 -222450.9776 163.3889 -267366.1200 -222046.7090 163.3889 -671.8547 -2269.9921 921491.4634 -671.8547 -2269.9921
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TIMING: 420 CPU: 197.461, 0.458342/step Wall: 197.461, 0.458342/step, 0.0101854 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 422 22275.7615 19449.5347 5688.9976 174.4058 -338225.0308 23208.5471 0.0000 0.0000 45004.7089 -222423.0753 163.7148 -267427.7841 -222052.8445 163.7148 -4363.1152 -2465.6374 921491.4634 -4363.1152 -2465.6374
ENERGY: 423 21418.8986 19324.4271 5689.6736 172.2146 -337416.8950 23180.6036 0.0000 0.0000 45183.9718 -222447.1058 164.3669 -267631.0776 -222051.5227 164.3669 -3955.8307 -2434.9307 921491.4634 -3955.8307 -2434.9307
ENERGY: 424 20531.3311 19270.7815 5692.6542 170.6563 -336406.2759 23140.4641 0.0000 0.0000 45151.0461 -222449.3425 164.2471 -267600.3887 -222060.4122 164.2471 -3030.1606 -2370.2032 921491.4634 -3030.1606 -2370.2032
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ENERGY: 427 19598.5317 19595.2899 5707.1504 168.7509 -335498.4314 23074.5002 0.0000 0.0000 44915.2779 -222438.9305 163.3894 -267354.2084 -222048.7333 163.3894 -741.9008 -2207.6354 921491.4634 -741.9008 -2207.6354
ENERGY: 428 20140.4230 19760.4170 5710.4628 168.5259 -336199.9848 23087.7672 0.0000 0.0000 44884.2599 -222448.1292 163.2766 -267332.3890 -222058.0544 163.2766 -935.5734 -2206.9585 921491.4634 -935.5734 -2206.9585
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 433 21200.9072 20275.9661 5710.3763 168.4633 -338164.0628 23162.2904 0.0000 0.0000 45192.9286 -222453.1309 164.3995 -267646.0595 -222052.5980 164.3995 -3187.3735 -2272.1279 921491.4634 -3187.3735 -2272.1279
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ENERGY: 436 19670.9242 20349.9980 5717.2345 173.0864 -336303.8797 23119.9070 0.0000 0.0000 44847.0984 -222425.6312 163.1414 -267272.7296 -222059.6954 163.1414 -1520.6598 -2145.1617 921491.4634 -1520.6598 -2145.1617
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ENERGY: 438 19935.1532 20278.6093 5724.6883 179.3848 -336899.4564 23173.5511 0.0000 0.0000 45148.1328 -222459.9368 164.2365 -267608.0697 -222051.5663 164.2365 -1493.0943 -2145.0882 921491.4634 -1493.0943 -2145.0882
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TIMING: 440 CPU: 206.618, 0.457851/step Wall: 206.618, 0.457851/step, 0.00763085 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 447 19914.2847 19416.0209 5722.2107 191.8641 -335769.4393 23282.7452 0.0000 0.0000 44816.5093 -222425.8044 163.0301 -267242.3137 -222046.8337 163.0301 -1993.3113 -2253.0604 921491.4634 -1993.3113 -2253.0604
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 457 20047.4926 20251.9432 5718.5580 174.9241 -336395.8152 23277.8276 0.0000 0.0000 44521.8699 -222403.1997 161.9583 -266925.0697 -222049.4127 161.9583 -1906.4163 -2263.5012 921491.4634 -1906.4163 -2263.5012
ENERGY: 458 20585.8433 20019.2720 5720.7061 176.6081 -336835.0948 23294.7174 0.0000 0.0000 44632.7885 -222405.1594 162.3618 -267037.9479 -222051.2817 162.3618 -2684.6986 -2301.0426 921491.4634 -2684.6986 -2301.0426
ENERGY: 459 20903.4945 19784.9686 5724.0022 178.1985 -337468.1635 23318.6985 0.0000 0.0000 45113.9365 -222444.8647 164.1121 -267558.8012 -222053.1406 164.1121 -3350.5832 -2341.5795 921491.4634 -3350.5832 -2341.5795
TIMING: 460 CPU: 215.765, 0.457347/step Wall: 215.765, 0.457347/step, 0.00508163 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6140 19597.9061 5728.0972 179.4910 -338014.3760 23341.8003 0.0000 0.0000 45423.8565 -222480.6109 165.2395 -267904.4674 -222064.6829 165.2395 -3669.8202 -2365.2411 921491.4634 -3669.8202 -2365.2411
ENERGY: 461 21862.8764 19507.1075 5732.5753 180.4333 -338251.6212 23355.3937 0.0000 0.0000 45154.6138 -222458.6212 164.2601 -267613.2350 -222058.0500 164.2601 -3556.1667 -2361.1798 921491.4634 -3556.1667 -2361.1798
ENERGY: 462 22264.2256 19487.8110 5736.4823 180.9531 -337988.7168 23351.1088 0.0000 0.0000 44559.9292 -222408.2067 162.0968 -266968.1360 -222056.7207 162.0968 -2954.8200 -2323.4250 921491.4634 -2954.8200 -2323.4250
ENERGY: 463 21821.1792 19513.9018 5738.9361 181.1160 -337284.1028 23326.9480 0.0000 0.0000 44313.4572 -222388.5645 161.2002 -266702.0217 -222054.6235 161.2002 -2012.4423 -2264.0777 921491.4634 -2012.4423 -2264.0777
ENERGY: 464 20535.2460 19559.9275 5739.2519 181.0096 -336389.3844 23291.1945 0.0000 0.0000 44654.0269 -222428.7281 162.4391 -267082.7550 -222058.5725 162.4391 -1050.9227 -2205.5269 921491.4634 -1050.9227 -2205.5269
ENERGY: 465 19322.7827 19631.8856 5737.2899 180.7155 -335701.1539 23259.7394 0.0000 0.0000 45094.5691 -222474.1716 164.0416 -267568.7408 -222052.9384 164.0416 -512.3346 -2174.4009 921491.4634 -512.3346 -2174.4009
ENERGY: 466 19088.4510 19708.3582 5733.2107 180.2808 -335443.7732 23245.0607 0.0000 0.0000 45020.7914 -222467.6203 163.7733 -267488.4117 -222052.9782 163.7733 -630.3313 -2182.6711 921491.4634 -630.3313 -2182.6711
ENERGY: 467 19841.8070 19783.1742 5727.6704 179.7757 -335721.0958 23249.4533 0.0000 0.0000 44523.6673 -222415.5479 161.9649 -266939.2152 -222054.3491 161.9649 -1393.6029 -2232.5924 921491.4634 -1393.6029 -2232.5924
ENERGY: 468 20761.8483 19845.4941 5721.5090 179.2779 -336451.5674 23265.8128 0.0000 0.0000 44291.6593 -222385.9660 161.1209 -266677.6253 -222056.3588 161.1209 -2508.6715 -2314.1341 921491.4634 -2508.6715 -2314.1341
ENERGY: 469 21236.3019 19910.2020 5715.6824 178.8504 -337458.3210 23284.3965 0.0000 0.0000 44720.3208 -222412.5670 162.6802 -267132.8878 -222046.0748 162.6802 -3596.7408 -2405.7973 921491.4634 -3596.7408 -2405.7973
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1734 19972.8933 5710.9491 178.5947 -338383.2515 23297.0676 0.0000 0.0000 45346.4580 -222466.1154 164.9580 -267812.5734 -222047.6086 164.9580 -4259.6998 -2477.6832 921491.4634 -4259.6998 -2477.6832
ENERGY: 471 21732.8680 20054.6834 5707.9626 178.5890 -338913.2457 23297.5088 0.0000 0.0000 45471.3371 -222470.2968 165.4122 -267941.6339 -222047.5357 165.4122 -4290.5686 -2504.3176 921491.4634 -4290.5686 -2504.3176
ENERGY: 472 22081.2362 20161.5550 5707.0091 178.9047 -338870.6768 23279.4495 0.0000 0.0000 45028.5299 -222433.9925 163.8014 -267462.5223 -222059.5053 163.8014 -3659.7361 -2479.9183 921491.4634 -3659.7361 -2479.9183
ENERGY: 473 21866.1364 20289.3424 5707.9843 179.6165 -338307.7189 23240.7367 0.0000 0.0000 44634.5173 -222389.3854 162.3681 -267023.9027 -222043.8535 162.3681 -2556.3615 -2408.1657 921491.4634 -2556.3615 -2408.1657
ENERGY: 474 20842.9706 20372.0982 5710.2160 180.7466 -337438.4548 23189.2352 0.0000 0.0000 44733.2305 -222409.9577 162.7272 -267143.1881 -222041.2615 162.7272 -1295.5523 -2316.2727 921491.4634 -1295.5523 -2316.2727
ENERGY: 475 19674.2081 20371.7669 5712.9876 182.2512 -336604.2307 23142.3821 0.0000 0.0000 45070.2138 -222450.4212 163.9531 -267520.6349 -222039.4525 163.9531 -344.6447 -2232.2125 921491.4634 -344.6447 -2232.2125
ENERGY: 476 19235.7861 20282.0268 5715.7683 184.0125 -336100.0895 23115.8470 0.0000 0.0000 45106.0634 -222460.5855 164.0835 -267566.6489 -222053.6131 164.0835 -92.4047 -2183.0652 921491.4634 -92.4047 -2183.0652
ENERGY: 477 19704.7250 20145.9807 5718.4976 185.9230 -336101.8782 23114.2943 0.0000 0.0000 44812.3208 -222420.1368 163.0149 -267232.4577 -222044.8405 163.0149 -667.4944 -2171.8227 921491.4634 -667.4944 -2171.8227
ENERGY: 478 20493.4779 19974.7633 5721.0254 187.7262 -336537.4029 23131.2463 0.0000 0.0000 44627.0330 -222402.1308 162.3409 -267029.1638 -222047.4100 162.3409 -1807.1603 -2198.7955 921491.4634 -1807.1603 -2198.7955
ENERGY: 479 21125.3062 19793.3953 5723.3295 189.2098 -337215.5832 23156.6775 0.0000 0.0000 44802.1573 -222425.5076 162.9779 -267227.6649 -222050.5453 162.9779 -3089.8516 -2246.7917 921491.4634 -3089.8516 -2246.7917
TIMING: 480 CPU: 224.905, 0.456992/step Wall: 224.905, 0.456992/step, 0.00253885 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0330 19623.1963 5725.3111 190.1900 -337854.6780 23181.5121 0.0000 0.0000 45051.6810 -222458.7546 163.8856 -267510.4355 -222064.6205 163.8856 -4077.7328 -2291.4892 921491.4634 -4077.7328 -2291.4892
ENERGY: 481 22092.4854 19510.0434 5727.0952 190.6351 -338199.2476 23196.7962 0.0000 0.0000 45041.3364 -222440.8558 163.8480 -267482.1922 -222052.5261 163.8480 -4466.2395 -2305.6733 921491.4634 -4466.2395 -2305.6733
ENERGY: 482 22186.3468 19466.6797 5728.4963 190.3598 -338044.5413 23192.7477 0.0000 0.0000 44865.8515 -222414.0596 163.2096 -267279.9111 -222051.4108 163.2096 -4059.3099 -2278.0615 921491.4634 -4059.3099 -2278.0615
ENERGY: 483 21553.1415 19511.5748 5729.5660 189.3226 -337426.2180 23165.8743 0.0000 0.0000 44861.8963 -222414.8425 163.1952 -267276.7388 -222048.7667 163.1952 -2964.1722 -2216.4117 921491.4634 -2964.1722 -2216.4117
ENERGY: 484 20460.8928 19631.1941 5730.2465 187.5455 -336590.8877 23126.1354 0.0000 0.0000 45003.6025 -222451.2710 163.7107 -267454.8734 -222059.8735 163.7107 -1565.2422 -2143.1848 921491.4634 -1565.2422 -2143.1848
ENERGY: 485 19688.7722 19800.2992 5730.5256 185.2458 -335902.5859 23092.8472 0.0000 0.0000 44955.5720 -222449.3239 163.5360 -267404.8959 -222045.9599 163.5360 -422.1567 -2086.8735 921491.4634 -422.1567 -2086.8735
ENERGY: 486 19602.5427 19954.8176 5729.7197 182.4662 -335612.3560 23080.3809 0.0000 0.0000 44645.9115 -222416.5175 162.4096 -267062.4290 -222044.6753 162.4096 87.3183 -2070.0981 921491.4634 87.3183 -2070.0981
ENERGY: 487 19881.0926 20072.0212 5727.4347 179.4360 -335846.4475 23091.0545 0.0000 0.0000 44503.3493 -222392.0592 161.8910 -266895.4085 -222045.2400 161.8910 -192.2345 -2106.8840 921491.4634 -192.2345 -2106.8840
ENERGY: 488 20125.2102 20156.1360 5723.5440 176.4338 -336552.5448 23118.8617 0.0000 0.0000 44827.0554 -222425.3037 163.0685 -267252.3591 -222057.1934 163.0685 -1145.7536 -2194.6681 921491.4634 -1145.7536 -2194.6681
ENERGY: 489 20526.8876 20236.4608 5718.5748 173.8639 -337540.4650 23156.7311 0.0000 0.0000 45266.1000 -222461.8469 164.6656 -267727.9468 -222045.6081 164.6656 -2511.2408 -2316.7068 921491.4634 -2511.2408 -2316.7068
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7492 20292.9022 5712.8912 171.8438 -338458.1354 23196.4878 0.0000 0.0000 45213.5624 -222459.6989 164.4745 -267673.2613 -222048.2203 164.4745 -3823.4042 -2437.4157 921491.4634 -3823.4042 -2437.4157
ENERGY: 491 22430.4639 20312.1361 5707.3794 170.5404 -338984.5785 23226.0937 0.0000 0.0000 44733.0086 -222404.9564 162.7264 -267137.9650 -222049.4634 162.7264 -4629.6937 -2524.6217 921491.4634 -4629.6937 -2524.6217
ENERGY: 492 22612.9545 20289.6811 5702.9944 170.0208 -338937.5805 23232.7204 0.0000 0.0000 44542.1947 -222387.0146 162.0323 -266929.2094 -222060.3856 162.0323 -4606.8526 -2557.4731 921491.4634 -4606.8526 -2557.4731
ENERGY: 493 21558.2186 20260.7373 5700.7779 170.3201 -338358.0621 23214.0535 0.0000 0.0000 45033.8226 -222420.1321 163.8207 -267453.9547 -222046.5896 163.8207 -3796.3820 -2540.0998 921491.4634 -3796.3820 -2540.0998
ENERGY: 494 20068.3365 20225.0259 5700.9805 171.2193 -337454.3822 23183.0793 0.0000 0.0000 45622.2472 -222483.4935 165.9612 -268105.7406 -222044.0863 165.9612 -2500.8993 -2482.1070 921491.4634 -2500.8993 -2482.1070
ENERGY: 495 19383.2461 20186.8299 5703.5926 172.5416 -336566.9873 23159.4622 0.0000 0.0000 45484.1229 -222477.1921 165.4587 -267961.3150 -222041.5559 165.4587 -1249.6838 -2407.3058 921491.4634 -1249.6838 -2407.3058
ENERGY: 496 19722.4832 20130.6470 5708.0350 174.0933 -335998.7143 23154.2633 0.0000 0.0000 44699.5270 -222409.6655 162.6046 -267109.1925 -222049.0665 162.6046 -478.8998 -2343.4752 921491.4634 -478.8998 -2343.4752
ENERGY: 497 20212.6668 20059.9174 5713.4613 175.7242 -335952.5030 23166.3542 0.0000 0.0000 44261.0288 -222363.3505 161.0095 -266624.3793 -222042.7495 161.0095 -421.0234 -2316.7929 921491.4634 -421.0234 -2316.7929
ENERGY: 498 20182.0167 19957.1214 5718.5596 177.2604 -336366.4922 23189.3581 0.0000 0.0000 44728.2532 -222413.9228 162.7091 -267142.1760 -222044.5214 162.7091 -993.4682 -2331.6474 921491.4634 -993.4682 -2331.6474
ENERGY: 499 20158.0681 19847.7308 5722.4089 178.6361 -337058.4813 23219.2399 0.0000 0.0000 45439.2640 -222493.1334 165.2956 -267932.3974 -222047.2057 165.2956 -2020.8691 -2376.3392 921491.4634 -2020.8691 -2376.3392
Info: Benchmark time: 4 CPUs 0.456766 s/step 5.28664 days/ns 3224.27 MB memory
TIMING: 500 CPU: 233.971, 0.453306/step Wall: 233.971, 0.453306/step, 0 hours remaining, 3224.265625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8938 19756.6585 5724.4523 179.8271 -337741.4181 23251.1003 0.0000 0.0000 45359.0774 -222495.4086 165.0039 -267854.4860 -222061.0904 165.0039 -3197.5171 -2425.4144 921491.4634 -3197.5171 -2425.4144
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.203 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.203 MB of memory in use
====================================================
WallClock: 240.842010 CPUTime: 240.842010 Memory: 3229.203125 MB
[Partition 0][Node 0] End of program
Application 109844239 resources: utime ~947s, stime ~18s, Rss ~126700, inblocks ~67007, outblocks ~72238
Displaying status file:
verified
WALL=240.842010
CPU=240.842010
MEM=3229.203125
[SSH] completed
[SSH] exit-status: 0
[workspace] $ /bin/sh -xe /tmp/jenkins13821793197983296016.sh
+ rm -rf /var/lib/jenkins/jobs/NAMD-BW/workspace/cputime /var/lib/jenkins/jobs/NAMD-BW/workspace/memory /var/lib/jenkins/jobs/NAMD-BW/workspace/namd /var/lib/jenkins/jobs/NAMD-BW/workspace/wallclock
+ scp BW_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/cputime /var/lib/jenkins/jobs/NAMD-BW/workspace
+ scp BW_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/memory /var/lib/jenkins/jobs/NAMD-BW/workspace
+ scp BW_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/wallclock /var/lib/jenkins/jobs/NAMD-BW/workspace
Recording plot data
Saving plot series data from: /var/lib/jenkins/jobs/NAMD-BW/workspace/wallclock
Saving plot series data from: /var/lib/jenkins/jobs/NAMD-BW/workspace/cputime
Saving plot series data from: /var/lib/jenkins/jobs/NAMD-BW/workspace/memory
Finished: SUCCESS