Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/NAMD/workspace
Checking out a fresh workspace because /var/lib/jenkins/jobs/NAMD/workspace/namd doesn't exist
Cleaning local Directory namd
Checking out https://github.com/kc9qey/SWTools-BWCI/trunk/namd at revision HEAD
A .check4newver
A .exceptions
A 2.10
A 2.10/cle5.2_gnu5.1.0
A 2.10/cle5.2_gnu5.1.0/.owners
A 2.10/cle5.2_gnu5.1.0/build-notes
AU 2.10/cle5.2_gnu5.1.0/rebuild
AU 2.10/cle5.2_gnu5.1.0/relink
A 2.10/cle5.2_gnu5.1.0/remodule
AU 2.10/cle5.2_gnu5.1.0/retest
AU 2.10/cle5.2_gnu5.1.0/status
A 2.10/cle5.2_intel15.0.2
A 2.10/cle5.2_intel15.0.2/.owners
A 2.10/cle5.2_intel15.0.2/build-notes
AU 2.10/cle5.2_intel15.0.2/rebuild
AU 2.10/cle5.2_intel15.0.2/relink
A 2.10/cle5.2_intel15.0.2/remodule
AU 2.10/cle5.2_intel15.0.2/retest
AU 2.10/cle5.2_intel15.0.2/status
A description
A support
A versions
At revision 24
No changes for https://github.com/kc9qey/SWTools-BWCI/trunk/namd since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins17434125547978903922.sh
+ /usr/local/bin/jenkins_sync /var/lib/jenkins/jobs/NAMD/workspace/namd
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null
export SW_CONFIG=$SW_CONFIG
cd $SW_ROOT
echo SW_ROOT=$SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swbuildwait
[SSH] executing...
SW_ROOT=/scratch/system/bwjenkins/tests
swbuild -s -a namd -v 2.10 -b cle5.2_gnu5.1.0
# clear out old installation to prevent potential libtool chmod
# commands from failing when reinstalled by another person
rm -rf bin lib include man
rm -rf tcl* $NAMD_SRCDIR
#clear out status file since re-making
rm -f status
#-- Build TCL first since NAMD depends on TCL. Do not use other TCL version
tar -xzf /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-src.tar.gz
cd tcl*/unix
#-- Apply patch for TCL to work on Cray XE
patch -p0 < /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-crayxe-tclUnixInit.patch
patching file tclUnixInit.c
./configure CC=gcc --prefix=$SW_BLDDIR --disable-shared
checking whether to use symlinks for manpages... no
checking whether to compress the manpages... no
checking whether to add a package name suffix for the manpages... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dirent.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/wait.h usability... yes
checking sys/wait.h presence... yes
checking for sys/wait.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking if the compiler understands -pipe... yes
checking for building with threads... no (default)
checking for sin... no
checking for main in -lieee... yes
checking for main in -linet... no
checking net/errno.h usability... no
checking net/errno.h presence... no
checking for net/errno.h... no
checking for connect... yes
checking for gethostbyname... yes
checking how to build libraries... static
checking for ranlib... ranlib
checking if 64bit support is requested... no
checking if 64bit Sparc VIS support is requested... no
checking if compiler supports visibility "hidden"... yes
checking if rpath support is requested... yes
checking system version... Linux-3.0.101-0.46.1_1.0502.8871-cray_gem_s
checking for dlopen in -ldl... yes
checking for ar... ar
checking for build with symbols... no
checking for required early compiler flags... _LARGEFILE64_SOURCE
checking for 64-bit integer type... using long
checking whether byte ordering is bigendian... no
checking for getcwd... yes
checking for opendir... yes
checking for strtol... yes
checking for waitpid... yes
checking for strerror... yes
checking for getwd... yes
checking for wait3... yes
checking for uname... yes
checking for realpath... yes
checking for getaddrinfo... yes
checking for working getaddrinfo... yes
checking sys/modem.h usability... no
checking sys/modem.h presence... no
checking for sys/modem.h... no
checking termios vs. termio vs. sgtty... termios
checking for fd_set in sys/types... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for gmtime_r... yes
checking for localtime_r... yes
checking for mktime... yes
checking tm_tzadj in struct tm... no
checking tm_gmtoff in struct tm... yes
checking long timezone variable... yes
checking for struct stat.st_blocks... yes
checking for struct stat.st_blksize... yes
checking for blkcnt_t... yes
checking for fstatfs... yes
checking for working memcmp... yes
checking for memmove... yes
checking for strstr... yes
checking proper strstr implementation... ok
checking for strtoul... yes
checking proper strtoul implementation... ok
checking for strtod... yes
checking proper strtod implementation... ok
checking for strtod... (cached) yes
checking for Solaris2.4/Tru64 strtod bugs... ok
checking for mode_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for uid_t in sys/types.h... yes
checking for socklen_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking for opendir... (cached) yes
checking union wait... yes
checking for strncasecmp... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for gettimeofday declaration... present
checking whether char is unsigned... no
checking signed char declarations... yes
checking for a putenv() that copies the buffer... no
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking whether to use nl_langinfo... yes
checking for chflags... no
checking isnan... yes
checking for fts... no
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/filio.h usability... no
checking sys/filio.h presence... no
checking for sys/filio.h... no
checking system version... (cached) Linux-3.0.101-0.46.1_1.0502.8871-cray_gem_s
checking FIONBIO vs. O_NONBLOCK for nonblocking I/O... O_NONBLOCK
checking whether to use dll unloading... yes
checking for timezone data... /usr/share/zoneinfo
checking whether to enable DTrace support... no
checking if the C stack grows upwards in memory... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating dltest/Makefile
config.status: creating tclConfig.sh
make
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regcomp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regexec.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regfree.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regerror.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DUSE_TCLALLOC=0 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAsync.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c: In function 'TclEvalObjvInternal':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3659:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3751:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBinary.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCkalloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclClock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdAH.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdIL.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdMZ.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompCmds.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompExpr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDate.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDictObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEncoding.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEnv.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclExecute.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFileName.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclGet.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHash.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHistory.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIndexObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclInterp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIO.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIORChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOGT.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclListObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLiteral.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLoad.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclMain.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNamesp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNotify.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPanic.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclParse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPathObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 \
-DCFG_INSTALL_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_INSTALL_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_INSTALL_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_INSTALL_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_INSTALL_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
-DCFG_RUNTIME_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_RUNTIME_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_RUNTIME_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_RUNTIME_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_RUNTIME_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkgConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPosixStr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPreserve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c: In function 'TclObjInterpProcCore':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1718:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1753:10: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int l;
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1831:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclRegexp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResolve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResult.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclScan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStringObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStrToD.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThread.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadJoin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadStorage.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubLib.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTimer.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTrace.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtf.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclVar.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTomMathInterface.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixTime.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DTCL_LIBRARY=\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\" \
-DTCL_PACKAGE_PATH="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib \"" \
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixThrd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixCompat.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixNotfy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclLoadDl.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bncore.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_reverse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_and.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clamp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_mag.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_count_bits.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_3.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_exch.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_expt_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_grow.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_lshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_neg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_or.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_smap.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_read_radix.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_rshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_shrink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqrt.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toradix_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_unsigned_bin_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_xor.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_zero.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sub.c
rm -f libtclstub8.5.a
ar cr libtclstub8.5.a tclStubLib.o ; ranlib libtclstub8.5.a
rm -f libtcl8.5.a
ar cr libtcl8.5.a regcomp.o regexec.o regfree.o regerror.o tclAlloc.o tclAsync.o tclBasic.o tclBinary.o tclCkalloc.o tclClock.o tclCmdAH.o tclCmdIL.o tclCmdMZ.o tclCompCmds.o tclCompExpr.o tclCompile.o tclConfig.o tclDate.o tclDictObj.o tclEncoding.o tclEnv.o tclEvent.o tclExecute.o tclFCmd.o tclFileName.o tclGet.o tclHash.o tclHistory.o tclIndexObj.o tclInterp.o tclIO.o tclIOCmd.o tclIORChan.o tclIOGT.o tclIOSock.o tclIOUtil.o tclLink.o tclListObj.o tclLiteral.o tclLoad.o tclMain.o tclNamesp.o tclNotify.o tclObj.o tclPanic.o tclParse.o tclPathObj.o tclPipe.o tclPkg.o tclPkgConfig.o tclPosixStr.o tclPreserve.o tclProc.o tclRegexp.o tclResolve.o tclResult.o tclScan.o tclStringObj.o tclStrToD.o tclThread.o tclThreadAlloc.o tclThreadJoin.o tclThreadStorage.o tclStubInit.o tclStubLib.o tclTimer.o tclTrace.o tclUtf.o tclUtil.o tclVar.o tclTomMathInterface.o tclUnixChan.o tclUnixEvent.o tclUnixFCmd.o tclUnixFile.o tclUnixPipe.o tclUnixSock.o tclUnixTime.o tclUnixInit.o tclUnixThrd.o tclUnixCompat.o tclUnixNotfy.o tclLoadDl.o bncore.o bn_reverse.o bn_fast_s_mp_mul_digs.o bn_fast_s_mp_sqr.o bn_mp_add.o bn_mp_and.o bn_mp_add_d.o bn_mp_clamp.o bn_mp_clear.o bn_mp_clear_multi.o bn_mp_cmp.o bn_mp_cmp_d.o bn_mp_cmp_mag.o bn_mp_copy.o bn_mp_count_bits.o bn_mp_div.o bn_mp_div_d.o bn_mp_div_2.o bn_mp_div_2d.o bn_mp_div_3.o bn_mp_exch.o bn_mp_expt_d.o bn_mp_grow.o bn_mp_init.o bn_mp_init_copy.o bn_mp_init_multi.o bn_mp_init_set.o bn_mp_init_size.o bn_mp_karatsuba_mul.o bn_mp_karatsuba_sqr.o bn_mp_lshd.o bn_mp_mod.o bn_mp_mod_2d.o bn_mp_mul.o bn_mp_mul_2.o bn_mp_mul_2d.o bn_mp_mul_d.o bn_mp_neg.o bn_mp_or.o bn_mp_radix_size.o bn_mp_radix_smap.o bn_mp_read_radix.o bn_mp_rshd.o bn_mp_set.o bn_mp_shrink.o bn_mp_sqr.o bn_mp_sqrt.o bn_mp_sub.o bn_mp_sub_d.o bn_mp_to_unsigned_bin.o bn_mp_to_unsigned_bin_n.o bn_mp_toom_mul.o bn_mp_toom_sqr.o bn_mp_toradix_n.o bn_mp_unsigned_bin_size.o bn_mp_xor.o bn_mp_zero.o bn_s_mp_add.o bn_s_mp_mul_digs.o bn_s_mp_sqr.o bn_s_mp_sub.o ; ranlib libtcl8.5.a
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclAppInit.c
gcc -O2 -pipe -Wl,--export-dynamic tclAppInit.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix -ltcl8.5 -ldl -lieee -lm \
-Wl,-rpath,/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -o tclsh
if [ $? -ne 0 ] ; then
echo "TCL make failed"
exit 1
fi
make install
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin
Installing libtcl8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing tclsh as /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin/tclsh8.5
Installing tclConfig.sh to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing libtclstub8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing message catalogs
Creating msgs
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/opt0.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/http1.0
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/encoding
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4/platform
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.5
Installing header files
Installing library files to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5
Installing library http1.0 directory
Installing package http 2.7.5 as a Tcl Module
Installing library opt0.4 directory
Installing package msgcat 1.4.3 as a Tcl Module
Installing package tcltest 2.3.2 as a Tcl Module
Installing package platform 1.0.9 as a Tcl Module
Installing package platform::shell 1.1.4 as a Tcl Module
Installing library encoding directory
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man1
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/mann
Installing and cross-linking top-level (.1) docs
Installing and cross-linking C API (.3) docs
Installing and cross-linking command (.n) docs
if [ $? -ne 0 ] ; then
echo "TCL make install failed"
exit 1
fi
cd $SW_BLDDIR
tar -xzf /sw/sources/namd/${NAMD_VER}/${NAMD_SRCDIR}.tar.gz
cd $NAMD_SRCDIR
tar -xf ${CHARM_SRCDIR}.tar
rm -f ${CHARM_SRCDIR}.tar
cd $CHARM_SRCDIR
#-- Apply patch for charm++ bug triggered to new release of craype 2015-09
# This patch came from https://charm.cs.illinois.edu/redmine/issues/841
cat > fix_gethugepagesize.patch << EOF
diff --git a/src/arch/gni/Makefile.machine b/src/arch/gni/Makefile.machine
index c9652c9..b7a19ad 100644
--- a/src/arch/gni/Makefile.machine
+++ b/src/arch/gni/Makefile.machine
@@ -9,8 +9,5 @@ charm++: hybridAPI
.PHONY: hybridAPI
endif
-\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h \$(L)/cray_tlbhack.o
-
-\$(L)/cray_tlbhack.o: cray_tlbhack.c
- \$(CHARMC) -o \$@ cray_tlbhack.c
+\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h
diff --git a/src/scripts/charmc b/src/scripts/charmc
index 21fb325..88676b4 100755
--- a/src/scripts/charmc
+++ b/src/scripts/charmc
@@ -853,12 +853,6 @@ if [ -n "\$CHARMDEBUG" -a -z "\$SEQUENTIAL" -a -z "\$NATIVE" ]; then
OPTS_CPP="\$OPTS_CPP -O0 -g"
fi
-if [ -z "\$NATIVE" -a -n "\$UGNI_CFLAGS" ]
-then
- linkopt=\`env | grep "HUGETLB[0-9]*[MKG]_POST_LINK_OPTS" 2> /dev/null\`
- test -z "\$linkopt" && POST_LIBRARIES=\`AddList \$POST_LIBRARIES \$CHARMLIB/cray_tlbhack.o\`
-fi
-
PROCESSED_MODULES=""
if [ "\$WERROR" = "1" ]
EOF
patch -p1 < fix_gethugepagesize.patch
patching file src/arch/gni/Makefile.machine
patching file src/scripts/charmc
Hunk #1 succeeded at 842 (offset -11 lines).
./build charm++ gni-crayxc --no-build-shared --with-production
Creating dir: gni-crayxc
Creating dir: gni-crayxc/tmp
Copying src/scripts/Makefile to gni-crayxc/tmp
Soft-linking over bin
Soft-linking over lib
Soft-linking over lib_so
Soft-linking over include
Soft-linking over tmp
Generating gni-crayxc/tmp/conv-mach-pre.sh
Generating gni-crayxc/tmp/conv-mach-opt.h, conv-mach-opt.sh
Performing '/usr/bin/gmake basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in gni-crayxc/tmp
pwd
/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp
find . -type l -exec rm {} \;
rm -rf QuickThreads
rm -rf libs
rm -rf ../bin ; mkdir ../bin
if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \
cp -f ../../src/arch/`cat .vdir | awk -F- '{print $2}'`/unix2nt* ../bin; \
cp -f ../../src/arch/win32/createlink.exe ../bin; \
fi
rm -rf ../lib ; mkdir ../lib
rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso
rm -rf ../examples
rm -rf ../tests
rm -rf ../doc ; ln -s ../doc ../doc
../../src/scripts/gatherflat ../../src/scripts .
./gatherflat ../../src/conv-core .
./gatherflat ../../src/conv-ldb .
./gatherflat ../../src/conv-ccs .
./gatherflat ../../src/conv-perf .
./gatherflat ../../src/ck-core .
./gatherflat ../../src/ck-perf .
./gatherflat ../../src/ck-tune .
./gatherflat ../../src/ck-ldb .
./gatherflat ../../src/ck-com .
./gatherflat ../../src/ck-cp .
./gatherflat ../../src/conv-com .
./gatherflat ../../src/langs/simplemsg .
./gatherflat ../../src/langs/pvmc .
./gatherflat ../../src/langs/bluegene .
./gatherflat ../../src/langs/f90charm .
./gatherflat ../../src/xlatcpm .
./gathertree ../../src/QuickThreads QuickThreads
./gathertree ../../src/libs libs
./gathertree ../../src/arch/util .
./gathertree ../../src/util .
./gathertree ../../src/langs langs
./gathertree ../../src/langs/jade langs/jade
./gathertree ../../src/arch/common .
./gathertree ../../src/arch/`cat .gdir` .
test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new` . || true
./gatherflat ../../src/arch/`cat .vdir` .
./gathertree ../../examples ../examples
./gathertree ../../tests ../tests
rm -f ../bin/dep.pl ; cp dep.pl ../bin/
chmod +x charmc
./system_ln ../tmp/charmc ../bin/
rm -rf ../include ; mkdir ../include
./system_ln ../tmp/conv-*.*h ../include
./system_ln ../tmp/cc-*.*h ../include
./system_ln ../tmp/conv-mach-opt.sh ../include
if [ -x ./special.sh ] ; then ./special.sh ; fi
if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi
touch dirs+sources
/usr/bin/gmake charmxi
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
./configure --disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats
Error checking is disabled
Statistics collection is disabled
Charm tracing is disabled
Charm tracing communication thread is disabled
CharmDebug is disabled
Charm record/replay is disabled
CCS is enabled
Charm control point is disabled
Charm LB user data is disabled
Setting load balancing timer type as 'double'
checking machine name... gni-crayxc
checking "cp command as"... cp -p
checking "C++ compiler as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether C++ compiler works"... "ok"
checking "C++ linker as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether linker works"... "ok"
checking "Native C++ compiler as"... "g++ "
checking "Sequential C++ compiler as"... "g++ "
Setting charm++ envelope refnum field to unsigned short
Configuring support for message priorities of arbitrary size (bitvectors)
checking "whether compiler generates code for 64-bit"... "yes"
checking "whether compiler supports std::alignment_of"... "no"
checking "whether has values.h "... "yes"
checking "whether has stdint.h "... "yes"
checking "whether has malloc.h "... "yes"
checking "whether has alloca.h "... "yes"
checking "whether has regex.h "... "yes"
checking "whether long long works"... "yes"
checking "whether __int64 works"... "no"
checking "whether __int128 (128-bit integer) works"... "yes"
checking "whether __int128_t (128-bit integer) works"... "yes"
checking "whether long double works"... "yes"
checking "whether ucontext has FPU pointer"... "yes"
checking "whether ucontext uses uc_regs"... "no"
checking "whether ucontext has pointer (v_regs) of vector type"... "no"
checking "whether ibverbs ibv_port_attr has link_layer field"... "yes"
checking "whether inline works in C"... "yes"
checking "whether C++ signed char and char differ"... "yes"
checking "whether C++ allows declaration of varsize array"... "yes"
checking "whether typeinfo/typeid works"... "ok"
checking "whether std::iterator_traits is defined"... "ok"
checking "whether std::distance is defined"... "ok"
checking "whether std::inserter is defined"... "ok"
checking "whether std::unordered_map is defined"... "no"
checking "whether anon structs are permitted"... "yes"
checking "whether operator delete can be overloaded in same class"... "ok"
checking "whether offsetof is defined"... "yes"
checking "whether GCC x86 assembly works"... "yes"
checking "whether GCC x86 assembly for atomic increment works"... "yes"
checking "whether GCC IA64 assembly works"... "no"
checking "whether asm eieio assembly works"... "no"
checking "whether __thread (Thread Local Storage) is supported"... "yes"
checking "whether synchronization primitives (__sync_add_and_fetch) works in C"... "yes"
checking "whether synchronization primitives (__sync_synchronize) works in C"... "yes"
checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works in C"... "no"
checking "whether switching TLS register (64-bit) is supported"... "yes"
checking "whether getrusage accepts RUSAGE_THREAD"... "yes"
checking "whether has asctime"... "yes"
checking "whether has log2"... "yes"
checking "whether has sqrtf"... "yes"
checking "whether has fabsf"... "yes"
checking "whether has mkstemp"... "yes"
checking "whether has system"... "yes"
checking "whether has sync()"... "yes"
checking "whether has fsync()"... "yes"
checking "whether has fdatasync()"... "yes"
checking "whether has sbrk"... "yes"
checking "whether has _setjmp/_longjmp"... "yes"
checking "whether has mstats"... "no"
checking "whether has mallinfo"... "yes"
checking "whether has popen"... "yes"
checking "whether has poll"... "yes"
checking "whether has getpagesize"... "yes"
checking "whether has getpid"... "yes"
checking "whether has kill"... "yes"
checking "whether has setpriority"... "yes"
checking "whether to use signal-safe system() "... "no"
checking "whether sched_setaffinity call exists"... "yes"
checking "whether pthread_setaffinity_np call exists"... "yes"
checking "whether pthread_spin_lock exists"... "yes"
checking "whether bindprocessor call exists"... "no"
checking "whether dlopen links without -ldl"... "no"
checking "whether dlopen links with -ldl"... "yes"
checking "whether gethostname call exists"... "yes"
checking "whether getProcAddress works"... "no"
checking "whether has socklen_t"... "yes"
checking "whether getifaddrs call exists"... "yes"
checking "whether the mmap() syscall exists"... "yes"
checking "whether mmap() accepts MAP_ANON"... "yes"
checking "whether mmap() accepts MAP_NORESERVE"... "yes"
checking "whether has get_myaddress"... "yes"
checking "whether has mprotect"... "yes"
checking "whether glibc backtrace works"... "yes"
checking "whether has sleep "... "yes"
checking "whether has usleep "... "yes"
checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "yes"
checking "whether has zlib"... "yes"
checking "whether has elf.h "... "yes"
checking "whether has Multiprocessing.h for Apple "... "no"
checking "whether ntohl is available"... "yes"
checking "whether has libjpeg"... "yes"
checking "whether Python is installed"... "no"
checking "whether PMI_Get_nid exists"... "yes"
checking "whether Cray rca library is available"... "yes"
checking "whether Cray rca_has get_max_dimension"... "yes"
BALANCED_INJECTION test disabled on Aries network
checking "whether can build shared library"... "yes"
checking for sync... sync
checking "F77 compiler as"... "ftn "
checking "whether Fortran 77 compiler works"... "yes"
checking "F90 compiler as"... "ftn "
checking "whether Fortran 90 compiler works"... "yes"
checking subroutine name used by Fortran 90 compiler... ONESCORE
checking Fortran 90 mod name is capital... "no"
checking Fortran 90 mod name extension... "mod"
configure: creating ./config.status
config.status: creating libs/ck-libs/ampi/ampiCC
config.status: creating libs/ck-libs/ampi/ampirun
config.status: creating conv-autoconfig.h
config.status: executing config-cleanup commands
config.status: executing default commands
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-main.o ../../src/xlat-i/xi-main.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-symbol.o ../../src/xlat-i/xi-symbol.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-grammar.tab.o ../../src/xlat-i/xi-grammar.tab.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -DYY_NEVER_INTERACTIVE -c -o xi-scan.o ../../src/xlat-i/xi-scan.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-util.o ../../src/xlat-i/xi-util.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o sdag-globals.o ../../src/xlat-i/sdag/sdag-globals.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CSdagConstruct.o ../../src/xlat-i/sdag/CSdagConstruct.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C
../bin/charmc -host -language c++ -cp ../bin/ -o charmxi xi-main.o xi-symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o CParsedFile.o
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
/usr/bin/gmake headerlinks
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
../bin/charmc -intrinsic -optimize -production ckcallback.ci && touch ckcallback.ci.stamp
../bin/charmc -intrinsic -optimize -production DummyLB.ci && touch DummyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyLB.ci && touch GreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommLB.ci && touch CommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RandCentLB.ci && touch RandCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineLB.ci && touch RefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineCommLB.ci && touch RefineCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RotateLB.ci && touch RotateLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistributedLB.ci && touch DistributedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridLB.ci && touch HybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ComboCentLB.ci && touch ComboCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineSwapLB.ci && touch RefineSwapLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborLB.ci && touch NeighborLB.ci.stamp
../bin/charmc -intrinsic -optimize -production OrbLB.ci && touch OrbLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BlockLB.ci && touch BlockLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyCommLB.ci && touch GreedyCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphPartLB.ci && touch GraphPartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphBFTLB.ci && touch GraphBFTLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommLB.ci && touch GridCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommRefineLB.ci && touch GridCommRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HbmLB.ci && touch HbmLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineKLB.ci && touch RefineKLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareCommLB.ci && touch TempAwareCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TreeMatchLB.ci && touch TreeMatchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyAgentLB.ci && touch GreedyAgentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborCommLB.ci && touch NeighborCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production PhasebyArrayLB.ci && touch PhasebyArrayLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RecBipartLB.ci && touch RecBipartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommAwareRefineLB.ci && touch CommAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production AdaptiveLB.ci && touch AdaptiveLB.ci.stamp
../bin/charmc -intrinsic -optimize -production MetisLB.ci && touch MetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ScotchLB.ci && touch ScotchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TeamLB.ci && touch TeamLB.ci.stamp
../bin/charmc -intrinsic -optimize -production WSLB.ci && touch WSLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridMetisLB.ci && touch GridMetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareGreedyLB.ci && touch TempAwareGreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridSeedLB.ci && touch GridHybridSeedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoCentLB.ci && touch TopoCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridLB.ci && touch GridHybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoLB.ci && touch TopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineTopoLB.ci && touch RefineTopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareRefineLB.ci && touch TempAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmarshall.ci && touch ckmarshall.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarray.ci && touch ckarray.ci.stamp
../bin/charmc -intrinsic -optimize -production cklocation.ci && touch cklocation.ci.stamp
../bin/charmc -intrinsic -optimize -production ckreduction.ci && touch ckreduction.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarrayreductionmgr.ci && touch ckarrayreductionmgr.ci.stamp
../bin/charmc -intrinsic -optimize -production tempo.ci && touch tempo.ci.stamp
../bin/charmc -intrinsic -optimize -production waitqd.ci && touch waitqd.ci.stamp
../bin/charmc -intrinsic -optimize -production ckfutures.ci && touch ckfutures.ci.stamp
../bin/charmc -intrinsic -optimize -production ckcheckpoint.ci && touch ckcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmemcheckpoint.ci && touch ckmemcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production LBDatabase.ci && touch LBDatabase.ci.stamp
../bin/charmc -intrinsic -optimize -production MetaBalancer.ci && touch MetaBalancer.ci.stamp
../bin/charmc -intrinsic -optimize -production CentralLB.ci && touch CentralLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NullLB.ci && touch NullLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BaseLB.ci && touch BaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NborBaseLB.ci && touch NborBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistBaseLB.ci && touch DistBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridBaseLB.ci && touch HybridBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production EveryLB.ci && touch EveryLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommonLBs.ci && touch CommonLBs.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-summary.ci && touch trace-summary.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-projections.ci && touch trace-projections.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-autoPerf.ci && touch trace-autoPerf.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-simple.ci && touch trace-simple.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-controlPoints.ci && touch trace-controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-Tau.ci && touch trace-Tau.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-utilization.ci && touch trace-utilization.ci.stamp
../bin/charmc -intrinsic -optimize -production BlueGene.ci && touch BlueGene.ci.stamp
../bin/charmc -intrinsic -optimize -production ComlibManager.ci && touch ComlibManager.ci.stamp
../bin/charmc -intrinsic -optimize -production controlPoints.ci && touch controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production pathHistory.ci && touch pathHistory.ci.stamp
../bin/charmc -intrinsic -optimize -production mpi-mainmodule.ci && touch mpi-mainmodule.ci.stamp
Soft-linking headers...
for hdr in 3dgridrouter.h AAMLearner.h AAPLearner.h AdaptiveLB.decl.h AdaptiveLB.h BGPTorus.h BGQTorus.h BaseLB.decl.h BaseLB.h BlockLB.decl.h BlockLB.h BlueGene.decl.h BlueGene.h BroadcastStrategy.h CentralLB.decl.h CentralLB.h CentralLBMsg.h ChunkMulticastStrategy.h CkArray.decl.h CkArrayReductionMgr.decl.h CkCallback.decl.h CkCheckpoint.decl.h CkFutures.decl.h CkLocation.decl.h CkMarshall.decl.h CkMemCheckpoint.decl.h CkReduction.decl.h ComboCentLB.decl.h ComboCentLB.h ComlibArrayListener.h ComlibLearner.h ComlibManager.h ComlibSectionInfo.h ComlibStats.h ComlibStrategy.h CommAwareRefineLB.decl.h CommAwareRefineLB.h CommLB.decl.h CommLB.h CommLBHeap.h CommonLBs.decl.h ControlPoints.decl.h DirectMulticastStrategy.h DistBaseLB.decl.h DistBaseLB.h DistributedLB.decl.h DistributedLB.h DummyLB.decl.h DummyLB.h DummyStrategy.h EachToManyMulticastStrategy.h EveryLB.decl.h GraphBFTLB.decl.h GraphBFTLB.h GraphPartLB.decl.h GraphPartLB.h GreedyAgentLB.decl.h GreedyAgentLB.h GreedyCommLB.decl.h GreedyCommLB.h GreedyLB.decl.h GreedyLB.h GridCommLB.decl.h GridCommLB.h GridCommRefineLB.decl.h GridCommRefineLB.h GridHybridLB.decl.h GridHybridLB.h GridHybridSeedLB.decl.h GridHybridSeedLB.h GridMetisLB.decl.h GridMetisLB.h HbmLB.decl.h HbmLB.h HybridBaseLB.decl.h HybridBaseLB.h HybridLB.decl.h HybridLB.h HybridLBMsg.h LBAgent.h LBComm.h LBDBManager.h LBDatabase.decl.h LBDatabase.h LBMachineUtil.h LBOM.h LBObj.h LBProfit.h LBSimulation.h MPIStrategy.h MeshStreamingStrategy.h MetaBalancer.decl.h MetaBalancer.h MetisLB.decl.h MetisLB.h MsgPacker.h MultiRingMulticast.h MulticastStrategy.h NborBaseLB.decl.h NborBaseLB.h NeighborCommLB.decl.h NeighborCommLB.h NeighborLB.decl.h NeighborLB.h NeighborLBMsg.h NodeMulticast.h NullLB.decl.h OneTimeMulticastStrategy.h OrbLB.decl.h OrbLB.h PathHistory.decl.h PhasebyArrayLB.decl.h PhasebyArrayLB.h PipeBroadcastStrategy.h PrioStreaming.h RTH.h RandCentLB.decl.h RandCentLB.h RecBipartLB.decl.h RecBipartLB.h RectMulticastStrategy.h RefineCommLB.decl.h RefineCommLB.h RefineKLB.decl.h RefineKLB.h RefineLB.decl.h RefineLB.h RefineSwapLB.decl.h RefineSwapLB.h RefineTopoLB.decl.h RefineTopoLB.h Refiner.h RefinerApprox.h RefinerComm.h RefinerTemp.h RingMulticastStrategy.h RotateLB.decl.h RotateLB.h SSE-Double.h SSE-Float.h ScotchLB.decl.h ScotchLB.h StreamingStrategy.h TeamLB.decl.h TeamLB.h TempAwareCommLB.decl.h TempAwareCommLB.h TempAwareGreedyLB.decl.h TempAwareGreedyLB.h TempAwareRefineLB.decl.h TempAwareRefineLB.h TopoCentLB.decl.h TopoCentLB.h TopoLB.decl.h TopoLB.h TopoManager.h TraceAutoPerf.decl.h TraceControlPoints.decl.h TraceProjections.decl.h TraceSimple.decl.h TraceSummary.decl.h TraceTau.decl.h TraceUtilization.decl.h TreeMatchLB.decl.h TreeMatchLB.h WSLB.decl.h WSLB.h XTTorus.h arrayRedistributor.h autoPerfAPI.h bgconverse.h bigsim_debug.h bigsim_logs.h bigsim_network.h bigsim_ooc.h bigsim_record.h bigsim_timing.h bitvecset.h blue-conv.h blue.h blue_defs.h blue_impl.h blue_types.h ccs-auth.c ccs-auth.h ccs-client.c ccs-client.h ccs-server.h charm++.h charm-api.h charm.h ck.h ckBIconfig.h ckIgetControl.h ckarray.h ckarrayindex.h ckarrayreductionmgr.h ckbitvector.h ckcallback-ccs.h ckcallback.h ckcausalmlog.h ckcheckpoint.h ckcomplex.h ckdirect.h ckdll.h ckevacuation.h ckfutures.h ckgraph.h ckgraphTemp.h ckhashtable.h ckheap.h ckimage.h cklists.h ckliststring.h cklocation.h cklocrec.h ckmemcheckpoint.h ckmessage.h ckmessagelogging.h ckmigratable.h ckobjQ.h ckobjid.h ckreduction.h cksection.h cksequence.h cksequence_factory.h cksequence_internal.h ckset.h ckstatistics.h ckstream.h cktiming.h ckvector3d.h cmidirect.h cmidirectmanytomany.h cmimemcpy.h cmipool.h cmiqueue.h cmitls.h comlib.decl.h comlib.h controlPoints.h controlPointsf.h conv-autoconfig.h conv-ccs.h conv-common.h conv-config.h conv-config.sh conv-cpath.h conv-cpm.h conv-lists.h conv-mach.h conv-mach.sh conv-qd.h conv-random.h conv-trace.h convcomlib.h convcomlibmanager.h convcomlibstrategy.h converse.h cp_effects.h cpthreads.h crc32.h debug-charm.h debug-conv++.h debug-conv.h dummyconversestrategy.h elements.h envelope-path.h envelope.h graph.h graphrouter.h gridrouter.h hypercuberouter.h hypercubetopology.h init.h lbdb++.h lbdb.h manager.h memory-isomalloc.h mempool.h middle-blue.h middle-conv.h middle.h mpi-interoperate.h mpi_main.decl.h msgq.h objid.h pathHistory.h persistent.h petable.h pipebroadcastconverse.h pipelinestrategy.h prefixrouter.h pup.h pup_c.h pup_cmialloc.h pup_mpi.h pup_paged.h pup_stl.h pup_toNetwork.h pup_toNetwork4.h pupf.h pvm3.h pvmc.h qd.h queueing.h rand48_replacement.h random_sequence.h readonly.h register.h router.h routerstrategy.h sdag.h shared-alloc.h simd.h simplemsg.h sm.h sockRoutines.c sockRoutines.h stats.h strided_sequence.h tempo.decl.h tempo.h topology.h trace-autoPerf.h trace-bluegene.h trace-common.h trace-controlPoints.h trace-projections.h trace-simple.h trace.h treerouter.h vector2d.h waitqd.decl.h waitqd.h ; do test ! -f "../include/`basename $hdr`" && ./system_ln "../tmp/$hdr" ../include ; done
touch headerlinks
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
touch basics
Performing '/usr/bin/gmake charm++ OPTS=-optimize -production QUIET=' in gni-crayxc/tmp
../bin/charmc -optimize -production -I. -c -o DummyLB.o DummyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDummyLB.a DummyLB.o
ar: creating ../lib/libmoduleDummyLB.a
../bin/charmc -optimize -production -I. -c -o GreedyLB.o GreedyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyLB.a GreedyLB.o
ar: creating ../lib/libmoduleGreedyLB.a
../bin/charmc -optimize -production -I. -c -o CommLB.o CommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommLB.a CommLB.o
ar: creating ../lib/libmoduleCommLB.a
../bin/charmc -optimize -production -I. -c -o RandCentLB.o RandCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRandCentLB.a RandCentLB.o
ar: creating ../lib/libmoduleRandCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineLB.o RefineLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineLB.a RefineLB.o
ar: creating ../lib/libmoduleRefineLB.a
../bin/charmc -optimize -production -I. -c -o RefineCommLB.o RefineCommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineCommLB.a RefineCommLB.o
ar: creating ../lib/libmoduleRefineCommLB.a
cp -f libmoduleRefineCommLB.dep ../lib/
../bin/charmc -optimize -production -I. -c -o RotateLB.o RotateLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRotateLB.a RotateLB.o
ar: creating ../lib/libmoduleRotateLB.a
../bin/charmc -optimize -production -I. -c -o DistributedLB.o DistributedLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDistributedLB.a DistributedLB.o
ar: creating ../lib/libmoduleDistributedLB.a
../bin/charmc -optimize -production -I. -c -o HybridLB.o HybridLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleHybridLB.a HybridLB.o
ar: creating ../lib/libmoduleHybridLB.a
../bin/charmc -optimize -production -I. -c -o ComboCentLB.o ComboCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleComboCentLB.a ComboCentLB.o
ar: creating ../lib/libmoduleComboCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineSwapLB.o RefineSwapLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineSwapLB.a RefineSwapLB.o
ar: creating ../lib/libmoduleRefineSwapLB.a
../bin/charmc -optimize -production -I. -c -o NeighborLB.o NeighborLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleNeighborLB.a NeighborLB.o
ar: creating ../lib/libmoduleNeighborLB.a
../bin/charmc -optimize -production -I. -c -o OrbLB.o OrbLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleOrbLB.a OrbLB.o
ar: creating ../lib/libmoduleOrbLB.a
../bin/charmc -optimize -production -I. -c -o BlockLB.o BlockLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleBlockLB.a BlockLB.o
ar: creating ../lib/libmoduleBlockLB.a
../bin/charmc -optimize -production -I. -c -o GreedyCommLB.o GreedyCommLB.C
../bin/charmc -optimize -production -I. -c -o manager.o manager.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyCommLB.a GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleGreedyCommLB.a
../bin/charmc -optimize -production -I. -c -o CommonLBs.o CommonLBs.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommonLBs.a CommonLBs.o DummyLB.o GreedyLB.o CommLB.o RandCentLB.o RefineLB.o RefineCommLB.o RotateLB.o DistributedLB.o HybridLB.o ComboCentLB.o RefineSwapLB.o NeighborLB.o OrbLB.o BlockLB.o GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleCommonLBs.a
/usr/bin/gmake -C libs/ck-libs/completion
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../../../../bin/charmc -optimize -production -c completion.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o completion.o completion.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmodulecompletion.a completion.o
ar: creating ../../../../lib/libmodulecompletion.a
/bin/cp completion.decl.h ../../../../include
/bin/cp completion.def.h ../../../../include
/bin/cp completion.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../bin/charmc -seq -DCMK_NOT_USE_CONVERSE=1 -o sockRoutines-seq.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o trace-common.o trace-common.C
../bin/charmc -optimize -production -I. -c -o tracec.o tracec.C
../bin/charmc -optimize -production -I. -c -o tracef.o tracef.C
../bin/charmc -optimize -production -I. -c -o init.o init.C
../bin/charmc -optimize -production -I. -c -o register.o register.C
../bin/charmc -optimize -production -I. -c -o qd.o qd.C
../bin/charmc -optimize -production -I. -c -o ck.o ck.C
../bin/charmc -optimize -production -I. -c -o msgalloc.o msgalloc.C
../bin/charmc -optimize -production -I. -c -o ckfutures.o ckfutures.C
../bin/charmc -optimize -production -I. -c -o ckIgetControl.o ckIgetControl.C
../bin/charmc -optimize -production -I. -c -o debug-message.o debug-message.C
../bin/charmc -optimize -production -I. -c -o debug-charm.o debug-charm.C
../bin/charmc -optimize -production -I. -c -o ckcallback.o ckcallback.C
../bin/charmc -optimize -production -I. -c -o cklocation.o cklocation.C
../bin/charmc -optimize -production -I. -c -o ckarray.o ckarray.C
../bin/charmc -optimize -production -I. -c -o ckreduction.o ckreduction.C
../bin/charmc -optimize -production -I. -c -o ckarrayreductionmgr.o ckarrayreductionmgr.C
../bin/charmc -optimize -production -I. -c -o tempo.o tempo.C
../bin/charmc -optimize -production -I. -c -o waitqd.o waitqd.C
../bin/charmc -optimize -production -I. -c -o LBDatabase.o LBDatabase.C
../bin/charmc -optimize -production -I. -c -o MetaBalancer.o MetaBalancer.C
../bin/charmc -optimize -production -I. -c -o lbdb.o lbdb.C
../bin/charmc -optimize -production -I. -c -o lbdbf.o lbdbf.C
../bin/charmc -optimize -production -I. -c -o ckobjQ.o ckobjQ.C
../bin/charmc -optimize -production -I. -c -o LBAgent.o LBAgent.C
../bin/charmc -optimize -production -I. -c -o LBProfit.o LBProfit.C
../bin/charmc -optimize -production -I. -c -o ckcheckpoint.o ckcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckmemcheckpoint.o ckmemcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C
../bin/charmc -optimize -production -I. -c -o ckmessagelogging.o ckmessagelogging.C
../bin/charmc -optimize -production -I. -c -o ckcausalmlog.o ckcausalmlog.C
../bin/charmc -optimize -production -I. -c -o ckobjid.o ckobjid.C
../bin/charmc -optimize -production -I. -c -o LBDBManager.o LBDBManager.C
../bin/charmc -optimize -production -I. -c -o LBComm.o LBComm.C
../bin/charmc -optimize -production -I. -c -o LBObj.o LBObj.C
../bin/charmc -optimize -production -I. -c -o LBMachineUtil.o LBMachineUtil.C
../bin/charmc -optimize -production -I. -c -o CentralPredictor.o CentralPredictor.C
../bin/charmc -optimize -production -I. -c -o BaseLB.o BaseLB.C
../bin/charmc -optimize -production -I. -c -o CentralLB.o CentralLB.C
../bin/charmc -optimize -production -I. -c -o HybridBaseLB.o HybridBaseLB.C
../bin/charmc -optimize -production -I. -c -o NborBaseLB.o NborBaseLB.C
../bin/charmc -optimize -production -I. -c -o DistBaseLB.o DistBaseLB.C
../bin/charmc -optimize -production -I. -c -o ckgraphTemp.o ckgraphTemp.C
../bin/charmc -optimize -production -I. -c -o ckgraph.o ckgraph.C
../bin/charmc -optimize -production -I. -c -o LButil.o LButil.C
../bin/charmc -optimize -production -I. -c -o RefinerTemp.o RefinerTemp.C
../bin/charmc -optimize -production -I. -c -o Refiner.o Refiner.C
../bin/charmc -optimize -production -I. -c -o RefinerApprox.o RefinerApprox.C
../bin/charmc -optimize -production -I. -c -o RefinerComm.o RefinerComm.C
../bin/charmc -optimize -production -I. -c -o bitvecset.o bitvecset.c
../bin/charmc -optimize -production -I. -c -o ckset.o ckset.C
../bin/charmc -optimize -production -I. -c -o ckheap.o ckheap.C
../bin/charmc -optimize -production -I. -c -o CommLBHeap.o CommLBHeap.C
../bin/charmc -optimize -production -I. -c -o NullLB.o NullLB.C
../bin/charmc -optimize -production -I. -c -o LBSimulation.o LBSimulation.C
../bin/charmc -optimize -production -I. -c -o ComlibModuleInterface.o ComlibModuleInterface.C
../bin/charmc -optimize -production -I. -c -o modifyScheduler.o modifyScheduler.C
../bin/charmc -optimize -production -I. -c -o charmProjections.o charmProjections.C
../bin/charmc -optimize -production -I. -c -o cktiming.o cktiming.C
../bin/charmc -optimize -production -I. -c -o ckbitvector.o ckbitvector.C
../bin/charmc -optimize -production -I. -c -o pathHistory.o pathHistory.C
../bin/charmc -optimize -production -I. -c -o controlPoints.o controlPoints.C
../bin/charmc -optimize -production -I. -c -o arrayRedistributor.o arrayRedistributor.C
../bin/charmc -optimize -production -I. -c -o cp_effects.o cp_effects.C
../bin/charmc -optimize -production -I. -c -o trace-controlPoints.o trace-controlPoints.C
../bin/charmc -optimize -production -I. -c -o mpi-interoperate.o mpi-interoperate.C
../bin/charmc -optimize -production -o ../lib/libck.a trace-common.o tracec.o tracef.o init.o register.o qd.o ck.o msgalloc.o ckfutures.o ckIgetControl.o debug-message.o debug-charm.o ckcallback.o cklocation.o ckarray.o ckreduction.o ckarrayreductionmgr.o tempo.o waitqd.o LBDatabase.o MetaBalancer.o lbdb.o lbdbf.o ckobjQ.o LBAgent.o LBProfit.o ckcheckpoint.o ckmemcheckpoint.o ckevacuation.o ckmessagelogging.o ckcausalmlog.o ckobjid.o LBDBManager.o LBComm.o LBObj.o LBMachineUtil.o CentralPredictor.o BaseLB.o CentralLB.o HybridBaseLB.o NborBaseLB.o DistBaseLB.o ckgraphTemp.o ckgraph.o LButil.o RefinerTemp.o Refiner.o RefinerApprox.o RefinerComm.o bitvecset.o ckset.o ckheap.o CommLBHeap.o NullLB.o LBSimulation.o ComlibModuleInterface.o modifyScheduler.o charmProjections.o cktiming.o ckbitvector.o pathHistory.o controlPoints.o arrayRedistributor.o cp_effects.o trace-controlPoints.o mpi-interoperate.o
ar: creating ../lib/libck.a
../bin/charmc -optimize -production -I. -c -o convcore.o convcore.c
convcore.c: In function 'ConverseCommonInit':
convcore.c:3563:3: warning: implicit declaration of function 'CmiPoolAllocInit' [-Wimplicit-function-declaration]
CmiPoolAllocInit(30);
^
convcore.c: In function 'ConverseCommonExit':
convcore.c:3657:3: warning: implicit declaration of function 'seedBalancerExit' [-Wimplicit-function-declaration]
seedBalancerExit();
^
convcore.c:3658:3: warning: implicit declaration of function 'EmergencyExit' [-Wimplicit-function-declaration]
EmergencyExit();
^
../bin/charmc -optimize -production -I. -c -o conv-conds.o conv-conds.c
../bin/charmc -optimize -production -I. -c -o queueing.o queueing.C
../bin/charmc -optimize -production -I. -c -o msgmgr.o msgmgr.c
../bin/charmc -optimize -production -I. -c -o cpm.o cpm.c
../bin/charmc -optimize -production -I. -c -o cpthreads.o cpthreads.c
../bin/charmc -optimize -production -I. -c -o futures.o futures.c
../bin/charmc -optimize -production -I. -c -o cldb.o cldb.c
../bin/charmc -optimize -production -I. -c -o topology.o topology.C
../bin/charmc -optimize -production -I. -c -o random.o random.c
../bin/charmc -optimize -production -I. -c -o debug-conv.o debug-conv.c
debug-conv.c: In function 'CpdSearchLeaks':
debug-conv.c:88:3: warning: implicit declaration of function 'check_memory_leaks' [-Wimplicit-function-declaration]
check_memory_leaks(info);
^
../bin/charmc -optimize -production -I. -c -o debug-conv++.o debug-conv++.C
../bin/charmc -optimize -production -I. -c -o generate.o generate.c
../bin/charmc -optimize -production -I. -c -o edgelist.o edgelist.c
../bin/charmc -optimize -production -I. -c -o conv-ccs.o conv-ccs.c
conv-ccs.c: In function 'CcsSendReply':
conv-ccs.c:175:3: warning: implicit declaration of function 'CcsReply' [-Wimplicit-function-declaration]
CcsReply(CpvAccess(ccsReq),replyLen,replyData);
^
../bin/charmc -optimize -production -I. -c -o ccs-builtins.o ccs-builtins.C
../bin/charmc -optimize -production -I. -c -o middle-ccs.o middle-ccs.C
../bin/charmc -optimize -production -I. -c -o traceCore.o traceCore.C
../bin/charmc -optimize -production -I. -c -o traceCoreCommon.o traceCoreCommon.C
../bin/charmc -optimize -production -I. -c -o converseProjections.o converseProjections.C
../bin/charmc -optimize -production -I. -c -o machineProjections.o machineProjections.C
../bin/charmc -optimize -production -I. -c -o quiescence.o quiescence.c
../bin/charmc -optimize -production -I. -c -o isomalloc.o isomalloc.c
../bin/charmc -optimize -production -I. -c -o mem-arena.o mem-arena.c
../bin/charmc -optimize -production -I. -c -o conv-counter.o conv-counter.c
../bin/charmc -optimize -production -I. -c -o global-nop.o global-nop.c
../bin/charmc -optimize -production -I. -c -o cmipool.o cmipool.c
../bin/charmc -optimize -production -I. -c -o cpuaffinity.o cpuaffinity.c
../bin/charmc -optimize -production -I. -c -o cputopology.o cputopology.C
../bin/charmc -optimize -production -I. -c -o cmitls.o cmitls.c
../bin/charmc -optimize -production -I. -c -o memoryaffinity.o memoryaffinity.c
./commitid.sh
Copying VERSION.new = v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969 over VERSION =
echo "const char * const CmiCommitID = \"`cat VERSION`\";" > commitid.c
../bin/charmc -optimize -production -I. -c -o commitid.o commitid.c
../bin/charmc -optimize -production -I. -c -o sdag.o sdag.C
../bin/charmc -optimize -production -I. -c -o conv-interoperate.o conv-interoperate.c
../bin/charmc -optimize -production -o ../lib/libconv-core.a convcore.o conv-conds.o queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o topology.o random.o debug-conv.o debug-conv++.o generate.o edgelist.o conv-ccs.o ccs-builtins.o middle-ccs.o traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o quiescence.o isomalloc.o mem-arena.o conv-counter.o global-nop.o cmipool.o cpuaffinity.o cputopology.o cmitls.o memoryaffinity.o commitid.o sdag.o conv-interoperate.o
ar: creating ../lib/libconv-core.a
../bin/charmc -optimize -production -o machine.o -DFOR_CPLUS=1 machine.c
../bin/charmc -optimize -production -o ../lib/libconv-cplus-y.a machine.o
ar: creating ../lib/libconv-cplus-y.a
../bin/charmc -optimize -production -o ../lib/libconv-cplus-n.a -DFOR_CPLUS=0 machine.c
ar: creating ../lib/libconv-cplus-n.a
../bin/charmc -optimize -production -I. -c -o pup_util.o pup_util.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork.o pup_toNetwork.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork4.o pup_toNetwork4.C
../bin/charmc -optimize -production -I. -c -o pup_xlater.o pup_xlater.C
../bin/charmc -optimize -production -I. -c -o pup_c.o pup_c.C
../bin/charmc -optimize -production -I. -c -o pup_paged.o pup_paged.C
../bin/charmc -optimize -production -I. -c -o pup_cmialloc.o pup_cmialloc.C
../bin/charmc -optimize -production -I. -c -o ckimage.o ckimage.C
../bin/charmc -optimize -production -I. -c -o ckdll.o ckdll.C
../bin/charmc -optimize -production -I. -c -o ckhashtable.o ckhashtable.C
../bin/charmc -optimize -production -I. -c -o sockRoutines.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o conv-lists.o conv-lists.C
../bin/charmc -optimize -production -I. -c -o RTH.o RTH.C
../bin/charmc -optimize -production -I. -c -o persist-comm.o persist-comm.c
../bin/charmc -optimize -production -I. -c -o mempool.o mempool.c
../bin/charmc -optimize -production -I. -c -o graph.o graph.c
../bin/charmc -optimize -production -I. -c -o TopoManager.o TopoManager.C
../bin/charmc -optimize -production -I. -c -o CrayNid.o CrayNid.c
../bin/charmc -optimize -production -I. -c -o BGQTorus.o BGQTorus.C
../bin/charmc -optimize -production -I. -c -o crc32.o crc32.c
../bin/charmc -optimize -production -I. -c -o lz4.o lz4.c
lz4.c: In function 'lz4_wrapper_decompress':
lz4.c:871:21: warning: implicit declaration of function 'CmiAbort' [-Wimplicit-function-declaration]
if(sinkint < 0) CmiAbort("decode fails\n");
^
../bin/charmc -optimize -production -I. -c -o partitioning_strategies.o partitioning_strategies.C
../bin/charmc -optimize -production -I. -c -o hilbert.o hilbert.C
../bin/charmc -optimize -production -o ../lib/libconv-util.a pup_util.o pup_toNetwork.o pup_toNetwork4.o pup_xlater.o pup_c.o pup_paged.o pup_cmialloc.o ckimage.o ckdll.o ckhashtable.o sockRoutines.o conv-lists.o RTH.o persist-comm.o mempool.o graph.o TopoManager.o CrayNid.o BGQTorus.o crc32.o lz4.o partitioning_strategies.o hilbert.o
ar: creating ../lib/libconv-util.a
../bin/charmc -optimize -production -c pup_f.f90 && ../bin/charmc -optimize -production -cpmod ../include pupmod.M || touch pup_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a
ar: creating ../lib/libconv-utilf.a
../bin/charmc -optimize -production -o ../lib/libldb-rand.o cldb.rand.c
../bin/charmc -optimize -production -o ../lib/libldb-spray.o cldb.spray.c
../bin/charmc -optimize -production -o ../lib/libldb-workstealing.o cldb.workstealing.c
cldb.workstealing.c: In function 'CldAskLoadHandler':
cldb.workstealing.c:114:11: warning: implicit declaration of function 'CldMultipleSendPrio' [-Wimplicit-function-declaration]
CldMultipleSendPrio(receiver, sendLoad, rank, 0);
^
../bin/charmc -optimize -production -o ../lib/libldb-neighbor.o cldb.neighbor.c
../bin/charmc -optimize -production -o ../lib/libldb-none.o cldb.none.c
../bin/charmc -optimize -production -o ../lib/libldb-test.o cldb.test.c
../bin/charmc -optimize -production -o ../lib/libldb-bluegene.o cldb.bluegene.c
../bin/charmc -optimize -production -I. -c -o trace-converse.o trace-converse.c
../bin/charmc -optimize -production -o ../lib/libtrace-converse.a trace-converse.o
ar: creating ../lib/libtrace-converse.a
../bin/charmc -optimize -production -o tracef_f.o -c tracef_f.f90 && ../bin/charmc -optimize -production -cpmod ../include tracemod.M || touch tracef_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libtracef_f.a tracef_f.o || touch ../lib/libtracef_f.a
ar: creating ../lib/libtracef_f.a
../bin/charmc -optimize -production -I. -o ../lib/libmemory-default.o -DCMK_MEMORY_BUILD_DEFAULT memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os.o -DCMK_MEMORY_BUILD_OS memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-gnu.o -DCMK_MEMORY_BUILD_GNU memory.c || touch ../lib/libmemory-gnu.o
In file included from memory-gnu.c:82:0,
from memory.c:544:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory.c:544:0:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-verbose.o -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-verbose.o
In file included from memory-gnu.c:82:0,
from memory-verbose.c:11,
from memory.c:555:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-verbose.c:11:0,
from memory.c:555:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-paranoid.o -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-paranoid.o
In file included from memory-gnu.c:82:0,
from memory-paranoid.c:258,
from memory.c:559:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-paranoid.c:258:0,
from memory.c:559:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-leak.o -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-leak.o
In file included from memory-gnu.c:82:0,
from memory-leak.c:21,
from memory.c:563:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-leak.c:21:0,
from memory.c:563:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-isomalloc.o -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-isomalloc.o
In file included from memory-gnu.c:82:0,
from memory-isomalloc.c:14,
from memory.c:571:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-isomalloc.c:14:0,
from memory.c:571:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-verbose.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-os-verbose.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-isomalloc.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-os-isomalloc.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-leak.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-os-leak.o
../bin/charmc -optimize -production -o ../lib/libmemory-os-paranoid.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-os-paranoid.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-lock.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK memory.c || touch ../lib/libmemory-os-lock.o
memory.c:527:0: warning: "MEM_LOCK_AROUND" redefined
#define MEM_LOCK_AROUND(code) code
^
In file included from memory.c:261:0:
memory-lock.c:3:0: note: this is the location of the previous definition
#define MEM_LOCK_AROUND(code) \
^
../bin/charmc -optimize -production -o ../lib/libmemory-os-wrapper.o memory-os-wrapper.C || touch ../lib/libmemory-os-wrapper.o
( /usr/bin/gmake -C QuickThreads clean )
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h libqt.a libstp.a meas.o stp.o qt.o
rm -f qtmdb.s qtmds.s qtmdc.o qtmdb.o qtmds.o run
rm -f Makefile
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
( cd QuickThreads;./configure )
Running configure on generic64
( /usr/bin/gmake -C QuickThreads qt OPTS='-optimize -production -Wno-error' ) || ( echo "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" && false )
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h
../system_ln md/setjmp_d.h qtmd.h
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qt.o qt.c
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qtmds.o md/setjmp64.c
md/setjmp64.c: In function 'qt_args_1':
md/setjmp64.c:20:33: warning: implicit declaration of function 'alloca' [-Wimplicit-function-declaration]
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:56:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)rjb, push_buf((void *)jb));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c:60:3: warning: implicit declaration of function 'write' [-Wimplicit-function-declaration]
write(2,"Never get here 2.\n",18);
^
md/setjmp64.c: In function 'qt_args':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:73:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c: In function 'qt_block':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:92:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:93:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c: In function 'qt_abort':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:105:3: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:106:11: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
CHARMINC=..; . ../conv-config.sh; \
../../bin/charmc -seq -I. -shared -optimize -production -Wno-error -o libqt.$CMK_SHARED_SUF qt.o qtmds.o
Warning: building shared library is skipped, possibly due to not supported, check configuration files.
../../bin/charmc -seq -I. -optimize -production -Wno-error -o libqt.a qt.o qtmds.o
ar: creating libqt.a
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
cp -f QuickThreads/libqt.a ../lib/libckqt.a
(CHARMINC=.; . ./conv-config.sh; \
test -d ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so/libckqt.$CMK_SHARED_SUF)
cp: cannot stat `QuickThreads/libqt.so': No such file or directory
gmake: [QUICK_THREADS] Error 1 (ignored)
touch QUICK_THREADS
../bin/charmc -optimize -production -o ../lib/libthreads-default.o -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads -I. threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-default-tls.o -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads -I. threads.c 2> /dev/null || touch ../lib/libthreads-default-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt.o -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-qt-tls.o -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-qt-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-context.o -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-tls.o -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-context-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext.o -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-tls.o -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-tls.o
threads.c: In function 'CtgInstallTLS':
threads.c:485:3: warning: implicit declaration of function 'switchTLS' [-Wimplicit-function-declaration]
switchTLS((tlsseg_t *)cur, newtls);
^
threads.c: In function 'CthBaseInit':
threads.c:537:3: warning: implicit declaration of function 'currentTLS' [-Wimplicit-function-declaration]
currentTLS(&_ctgTLS);
^
threads.c: In function 'CthCreateInner':
threads.c:1772:3: warning: implicit declaration of function 'allocNewTLSSeg' [-Wimplicit-function-declaration]
allocNewTLSSeg(&B(result)->tlsseg, result);
^
../bin/charmc -optimize -production -o ../lib/libthreads-pthreads.o -DCMK_THREADS_BUILD_PTHREADS=1 -IQuickThreads threads.c || touch ../lib/libthreads-pthreads.o
../bin/charmc -optimize -production -o ../lib/libthreads-fibers.o -DCMK_THREADS_BUILD_FIBERS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-fibers.o
../bin/charmc -optimize -production -o ../lib/libthreads-stackcopy.o -DCMK_THREADS_BUILD_STACKCOPY=1 -IQuickThreads threads.c || touch ../lib/libthreads-stackcopy.o
../bin/charmc -optimize -production -o ../lib/libthreads-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads threads.c || touch ../lib/libthreads-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c || touch ../lib/libthreads-qt-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-memoryalias.o
../bin/charmc -optimize -production -DCMK_NOT_USE_CONVERSE=1 ccs-client.c
../bin/charmc -optimize -production -o ../lib/libccs-client.a ccs-client.o
ar: creating ../lib/libccs-client.a
../bin/charmc -optimize -production -I. -c -o custom_partitioner.o custom_partitioner.C
../bin/charmc -optimize -production -I. -c -o set_partition_params.o set_partition_params.c
../bin/charmc -optimize -production -o ../lib/libconv-partition.a custom_partitioner.o set_partition_params.o
ar: creating ../lib/libconv-partition.a
if [ -f charmrun ] ; then ( cp -f charmrun ../bin ) ; fi
../bin/charmc -optimize -production -c global-elfgot.C -o ../lib/libglobal-swap.o || touch ../lib/libglobal-swap.o
../bin/charmc -optimize -production -c global-elfcopy.C -o ../lib/libglobal-copy.o || touch ../lib/libglobal-copy.o
../bin/charmc -optimize -production -c loadsym.c -o ../lib/loadsym.o || touch ../lib/loadsym.o
../bin/charmc -host conv-cpm.c
conv-cpm.flex:56:1: warning: return type defaults to 'int' [-Wimplicit-int]
yywrap(){ return(1); }
^
conv-cpm.flex:458:1: warning: return type defaults to 'int' [-Wimplicit-int]
main(int argc, char **argv)
^
../bin/charmc -host -language c -o conv-cpm -cp ../bin/ conv-cpm.o
../bin/charmc -optimize -production -c -I. charmf.C
../bin/charmc -optimize -production -c charmmod.f90 || touch charmmod.o
../bin/charmc -optimize -production -cpmod ../include charm.M
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libckf.a charmf.o charmmod.o || touch ../lib/libckf.a
ar: creating ../lib/libckf.a
../bin/charmc -optimize -production -I. -c -o main.o main.C
../bin/charmc -optimize -production -o ../lib/libckmain.a main.o
ar: creating ../lib/libckmain.a
/usr/bin/gmake -C libs/ck-libs/NDMeshStreamer
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
../../../../bin/charmc -optimize -production -c NDMeshStreamer.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o NDMeshStreamer.o NDMeshStreamer.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleNDMeshStreamer.a NDMeshStreamer.o
ar: creating ../../../../lib/libmoduleNDMeshStreamer.a
/bin/cp libmoduleNDMeshStreamer.dep ../../../../lib
/bin/cp NDMeshStreamer.decl.h ../../../../include
/bin/cp NDMeshStreamer.def.h ../../../../include
/bin/cp NDMeshStreamer.h ../../../../include
/bin/cp VirtualRouter.h ../../../../include
/bin/cp DataItemTypes.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
/usr/bin/gmake -C libs/ck-libs/multicast
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
../../../../bin/charmc -optimize -production -c ckmulticast.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o ckmulticast.o ckmulticast.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkMulticast.a ckmulticast.o
ar: creating ../../../../lib/libmoduleCkMulticast.a
/bin/cp CkMulticast.decl.h ../../../../include
/bin/cp CkMulticast.def.h ../../../../include
/bin/cp ckmulticast.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
/usr/bin/gmake -C libs/ck-libs/pythonCCS
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \
if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional OPTS='-optimize -production ' || exit 1); fi)
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
/usr/bin/gmake -C libs/ck-libs/io
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../../../../bin/charmc -optimize -production -c ckio.ci
touch ckio.ci.stamp
cp ckio.h CkIO.decl.h CkIO.def.h CkIO_impl.decl.h CkIO_impl.def.h ../../../../include/
touch headers
../../../../bin/charmc -optimize -production -c ckio.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkIO.a ckio.o
ar: creating ../../../../lib/libmoduleCkIO.a
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../bin/charmc -optimize -production -I. -c -o MPIStrategy.o MPIStrategy.C
../bin/charmc -optimize -production -I. -c -o StreamingStrategy.o StreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o DummyStrategy.o DummyStrategy.C
../bin/charmc -optimize -production -I. -c -o NodeMulticast.o NodeMulticast.C
../bin/charmc -optimize -production -I. -c -o ChunkMulticastStrategy.o ChunkMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o OneTimeMulticastStrategy.o OneTimeMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o EachToManyMulticastStrategy.o EachToManyMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibSectionInfo.o ComlibSectionInfo.C
../bin/charmc -optimize -production -I. -c -o AAPLearner.o AAPLearner.C
../bin/charmc -optimize -production -I. -c -o ComlibStats.o ComlibStats.C
../bin/charmc -optimize -production -I. -c -o AAMLearner.o AAMLearner.C
../bin/charmc -optimize -production -I. -c -o MsgPacker.o MsgPacker.C
../bin/charmc -optimize -production -I. -c -o MulticastStrategy.o MulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o DirectMulticastStrategy.o DirectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o RingMulticastStrategy.o RingMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o MultiRingMulticast.o MultiRingMulticast.C
../bin/charmc -optimize -production -I. -c -o PipeBroadcastStrategy.o PipeBroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o MeshStreamingStrategy.o MeshStreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o PrioStreaming.o PrioStreaming.C
../bin/charmc -optimize -production -I. -c -o BroadcastStrategy.o BroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o RectMulticastStrategy.o RectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibstrategy.o convcomlibstrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibManager.o ComlibManager.C
../bin/charmc -optimize -production -I. -c -o ComlibStrategy.o ComlibStrategy.C
../bin/charmc -optimize -production -I. -c -o gridrouter.o gridrouter.C
../bin/charmc -optimize -production -I. -c -o hypercuberouter.o hypercuberouter.C
../bin/charmc -optimize -production -I. -c -o treerouter.o treerouter.C
../bin/charmc -optimize -production -I. -c -o petable.o petable.C
../bin/charmc -optimize -production -I. -c -o 3dgridrouter.o 3dgridrouter.C
../bin/charmc -optimize -production -I. -c -o graphrouter.o graphrouter.C
../bin/charmc -optimize -production -I. -c -o hypercubetopology.o hypercubetopology.C
../bin/charmc -optimize -production -I. -c -o routerstrategy.o routerstrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibmanager.o convcomlibmanager.C
../bin/charmc -optimize -production -I. -c -o pipebroadcastconverse.o pipebroadcastconverse.C
../bin/charmc -optimize -production -I. -c -o pipelinestrategy.o pipelinestrategy.C
../bin/charmc -optimize -production -I. -c -o prefixrouter.o prefixrouter.C
../bin/charmc -optimize -production -o ../lib/libmodulecomlib.a MPIStrategy.o StreamingStrategy.o DummyStrategy.o NodeMulticast.o ChunkMulticastStrategy.o OneTimeMulticastStrategy.o EachToManyMulticastStrategy.o ComlibSectionInfo.o AAPLearner.o ComlibStats.o AAMLearner.o MsgPacker.o MulticastStrategy.o DirectMulticastStrategy.o RingMulticastStrategy.o MultiRingMulticast.o PipeBroadcastStrategy.o MeshStreamingStrategy.o PrioStreaming.o BroadcastStrategy.o RectMulticastStrategy.o convcomlibstrategy.o ComlibManager.o ComlibStrategy.o gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libmodulecomlib.a
cp -f ../lib/libmodulecomlib.a ../lib/libmodulecommlib.a
../bin/charmc -optimize -production -o ../lib/libconvcom.a gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libconvcom.a
../bin/charmc -optimize -production -I. -c -o mpi-mainmodule.o mpi-mainmodule.C
cp mpi-mainmodule.o ../lib
touch charm++
-------------------------------------------------
charm++ built successfully.
Next, try out a sample program like gni-crayxc/tests/charm++/simplearrayhello
cd ${SW_BLDDIR}/${NAMD_SRCDIR}
rm -rf CRAY-XT-g++
./config CRAY-XT-g++ --with-tcl --tcl-prefix $SW_BLDDIR \
--with-fftw3 --fftw-prefix $FFTW3_DIR \
--charm-base ${SW_BLDDIR}/${NAMD_SRCDIR}/${CHARM_SRCDIR} \
--charm-arch gni-crayxc
Selected arch file arch/CRAY-XT-g++.arch contains:
NAMD_ARCH = CRAY-XT
CHARMARCH = mpi-crayxt
#
# The GNU compilers produce significantly faster NAMD binaries than PGI.
#
# You must run the following to switch CC/cc to the GNU compiler
# environment before building either Charm++ or NAMD:
#
# module swap PrgEnv-pgi PrgEnv-gnu
#
# Users of psfgen might also need to do 'module remove acml' in order for
# the the psfgen compilation to succeed.
#
CXX = CC -DNOHOSTNAME -DNO_GETPWUID
CXXOPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
CC = cc
COPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
#
# ensure that required modules are loaded
#
$(info $(NAMD_PLATFORM))
loaded_modules := $(subst :, ,$(LOADEDMODULES))
module := $(filter rca/%,$(loaded_modules))
ifeq (,$(module))
$(error module rca is not loaded)
else
$(info found module $(module))
endif
module := $(filter PrgEnv-gnu/%,$(loaded_modules))
ifeq (,$(module))
$(error module PrgEnv-gnu is not loaded)
else
$(info found module $(module))
endif
Creating directory: CRAY-XT-g++
Creating link: .. to .rootdir
Writing build options to CRAY-XT-g++/Make.config
Linking Makefile
Linking Make.depends
Linking src directory
Linking plugins directory
Linking psfgen directory
Generated CRAY-XT-g++/Make.config contains the following:
CHARMBASE = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1
include .rootdir/arch/CRAY-XT-g++.arch
CHARMARCH = gni-crayxc
CHARM = $(CHARMBASE)/$(CHARMARCH)
NAMD_PLATFORM = $(NAMD_ARCH)-ugni
include .rootdir/arch/$(NAMD_ARCH).base
include .rootdir/arch/$(NAMD_ARCH).tcl
include .rootdir/arch/$(NAMD_ARCH).fftw3
TCLDIR = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0
FFTDIR = /opt/cray/fftw/3.3.4.11/interlagos
You are ready to run make in directory CRAY-XT-g++ now.
#-- specifying CC/cc causes segfault
#--charm-arch mpi-crayxc --cxx CC --cc cc
cd CRAY-XT-g++
make veryclean
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
rm -rf ptrepository Templates.DB SunWS_cache obj inc
rm -f namd2 psfgen sortreplicas flipdcd flipbinpdb charmrun
make
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
if [ ! -d inc ]; then mkdir -p inc; fi
if [ ! -f inc/.exists ]; then touch inc/.exists; fi
if [ ! -d obj ]; then mkdir -p obj; fi
if [ ! -f obj/.exists ]; then touch obj/.exists; fi
cp src/Node.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Node.ci
rm -f inc/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
cp src/PatchMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/PatchMgr.ci
rm -f inc/PatchMgr.ci
mv PatchMgr.def.h inc
mv PatchMgr.decl.h inc
cp src/ComputeMoaMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMoaMgr.ci
rm -f inc/ComputeMoaMgr.ci
mv ComputeMoaMgr.def.h inc
mv ComputeMoaMgr.decl.h inc
cp src/ComputeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMgr.ci
rm -f inc/ComputeMgr.ci
mv ComputeMgr.def.h inc
mv ComputeMgr.decl.h inc
cp src/WorkDistrib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/WorkDistrib.ci
rm -f inc/WorkDistrib.ci
mv WorkDistrib.def.h inc
mv WorkDistrib.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMoa.o -c src/ComputeMoa.C
cp src/ComputeMsmMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmMgr.ci
rm -f inc/ComputeMsmMgr.ci
mv ComputeMsmMgr.def.h inc
mv ComputeMsmMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsm.o -c src/ComputeMsm.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C
cp src/ComputeMsmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmSerialMgr.ci
rm -f inc/ComputeMsmSerialMgr.ci
mv ComputeMsmSerialMgr.def.h inc
mv ComputeMsmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C
cp src/ComputeFmmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeFmmSerialMgr.ci
rm -f inc/ComputeFmmSerialMgr.ci
mv ComputeFmmSerialMgr.def.h inc
mv ComputeFmmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm.o -c src/msm.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng.o -c src/msm_longrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_setup.o -c src/msm_setup.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng.o -c src/msm_shortrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/wkfutils.o -c src/wkfutils.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/common.o -c src/common.C
src/common.C: In function 'void NAMD_err(const char*)':
src/common.C:100:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'int NAMD_file_exists(const char*)':
src/common.C:137:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'void NAMD_backup_file(const char*, const char*)':
src/common.C:166:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdlib.o -c src/dcdlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/erf.o -c src/erf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fitrms.o -c src/fitrms.C
cp src/main.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/main.ci
Charmxi> 11: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented.
rm -f inc/main.ci
mv main.def.h inc
mv main.decl.h inc
cp src/ReductionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ReductionMgr.ci
rm -f inc/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
cp src/ProxyMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ProxyMgr.ci
rm -f inc/ProxyMgr.ci
mv ProxyMgr.def.h inc
mv ProxyMgr.decl.h inc
cp src/LdbCoordinator.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/LdbCoordinator.ci
rm -f inc/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
cp src/NamdCentLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdCentLB.ci
rm -f inc/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
cp src/NamdNborLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdNborLB.ci
rm -f inc/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
cp src/NamdHybridLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdHybridLB.ci
rm -f inc/NamdHybridLB.ci
mv NamdHybridLB.def.h inc
mv NamdHybridLB.decl.h inc
cp src/NamdDummyLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdDummyLB.ci
rm -f inc/NamdDummyLB.ci
mv NamdDummyLB.def.h inc
mv NamdDummyLB.decl.h inc
cp src/ComputePmeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputePmeMgr.ci
rm -f inc/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
cp src/OptPme.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/OptPme.ci
rm -f inc/OptPme.ci
mv OptPmeMgr.def.h inc
mv OptPmeMgr.decl.h inc
cp src/fftlib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/fftlib.ci
rm -f inc/fftlib.ci
mv PmeFFTLib.def.h inc
mv PmeFFTLib.decl.h inc
cp src/ComputeExtMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeExtMgr.ci
rm -f inc/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
cp src/ComputeGBISserMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGBISserMgr.ci
rm -f inc/ComputeGBISserMgr.ci
mv ComputeGBISserMgr.def.h inc
mv ComputeGBISserMgr.decl.h inc
cp src/CollectionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMgr.ci
rm -f inc/CollectionMgr.ci
mv CollectionMgr.def.h inc
mv CollectionMgr.decl.h inc
cp src/CollectionMaster.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMaster.ci
rm -f inc/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
cp src/BroadcastMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/BroadcastMgr.ci
rm -f inc/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
cp src/Sync.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Sync.ci
rm -f inc/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
cp src/ParallelIOMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ParallelIOMgr.ci
rm -f inc/ParallelIOMgr.ci
mv ParallelIOMgr.def.h inc
mv ParallelIOMgr.decl.h inc
cp src/DataExchanger.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/DataExchanger.ci
rm -f inc/DataExchanger.ci
mv DataExchanger.def.h inc
mv DataExchanger.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/main.o -c src/main.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/mainfunc.o -c src/mainfunc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/memusage.o -c src/memusage.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/strlib.o -c src/strlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgSeven.o -c src/AlgSeven.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgRecBisection.o -c src/AlgRecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgNbor.o -c src/AlgNbor.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AtomMap.o -c src/AtomMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BackEnd.o -c src/BackEnd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastClient.o -c src/BroadcastClient.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMaster.o -c src/CollectionMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMgr.o -c src/CollectionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Communicate.o -c src/Communicate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Compute.o -c src/Compute.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAngles.o -c src/ComputeAngles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAniso.o -c src/ComputeAniso.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeBonds.o -c src/ComputeBonds.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForce.o -c src/ComputeConsForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPME.o -c src/ComputeDPME.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEField.o -c src/ComputeEField.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEwald.o -c src/ComputeEwald.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeExt.o -c src/ComputeExt.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBISser.o -c src/ComputeGBISser.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBIS.o -c src/ComputeGBIS.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeLCPO.o -c src/ComputeLCPO.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeImpropers.o -c src/ComputeImpropers.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGridForce.o -c src/ComputeGridForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMap.o -c src/ComputeMap.C
src/ComputeMap.C: In member function 'void ComputeMap::printComputeMap()':
src/ComputeMap.C:232:7: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
fname = "computeMap.orig";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMgr.o -c src/ComputeMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C
In file included from src/ComputeNonbondedMICKernelBase2.h:218:0,
from src/ComputeNonbondedMICKernelBase.h:1555,
from src/ComputeNonbondedMICKernel.C:2645:
src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space
pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatch.o -c src/ComputePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatchPair.o -c src/ComputePatchPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePme.o -c src/ComputePme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPme.o -c src/OptPme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeRestraints.o -c src/ComputeRestraints.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeStir.o -c src/ComputeStir.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeTclBC.o -c src/ComputeTclBC.C
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)':
src/ComputeTclBC.C:145:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C:156:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:166:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:184:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:196:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:236:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:241:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:272:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:320:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:332:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:337:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:349:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:354:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:378:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/ComputeTclBC.C:384:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:398:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:404:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeThole.o -c src/ComputeThole.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ConfigList.o -c src/ConfigList.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Controller.o -c src/Controller.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ccsinterface.o -c src/ccsinterface.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataStream.o -c src/DataStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DumpBench.o -c src/DumpBench.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C
src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:205:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);};
^
src/FreeEnergyRestrain.C:213:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
src/FreeEnergyRestrain.C:218:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);}
^
src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:247:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);}
^
src/FreeEnergyRestrain.C:251:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fstream_namd.o -c src/fstream_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMaster.o -c src/GlobalMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:44:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:58:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"atom not found",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:74:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:100:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:150:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:163:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:193:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:265:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:307:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:365:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:410:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:429:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:437:72: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvar.o -c src/colvar.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvaratoms.o -c src/colvaratoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias.o -c src/colvarbias.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_abf.o -c src/colvarbias_abf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_alb.o -c src/colvarbias_alb.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_meta.o -c src/colvarbias_meta.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp.o -c src/colvarcomp.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvargrid.o -c src/colvargrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarmodule.o -c src/colvarmodule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarparse.o -c src/colvarparse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarscript.o -c src/colvarscript.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvartypes.o -c src/colvartypes.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarvalue.o -c src/colvarvalue.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GridForceGrid.o -c src/GridForceGrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GromacsTopFile.o -c src/GromacsTopFile.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/heap.o -c src/heap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/HomePatch.o -c src/HomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/IMDOutput.o -c src/IMDOutput.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/InfoStream.o -c src/InfoStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LdbCoordinator.o -c src/LdbCoordinator.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LJTable.o -c src/LJTable.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Measure.o -c src/Measure.C
src/Measure.C: In function 'int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/Measure.C:114:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MGridforceParams.o -c src/MGridforceParams.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MStream.o -c src/MStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule.o -c src/Molecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule2.o -c src/Molecule2.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GoMolecule.o -c src/GoMolecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdCentLB.o -c src/NamdCentLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdNborLB.o -c src/NamdNborLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdHybridLB.o -c src/NamdHybridLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdDummyLB.o -c src/NamdDummyLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdState.o -c src/NamdState.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdOneTools.o -c src/NamdOneTools.C
cp src/ComputeGridForceMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGridForceMgr.ci
rm -f inc/ComputeGridForceMgr.ci
mv ComputeGridForceMgr.def.h inc
mv ComputeGridForceMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Node.o -c src/Node.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Output.o -c src/Output.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Parameters.o -c src/Parameters.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParseOptions.o -c src/ParseOptions.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Patch.o -c src/Patch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMgr.o -c src/PatchMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMap.o -c src/PatchMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDB.o -c src/PDB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDBData.o -c src/PDBData.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeKSpace.o -c src/PmeKSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeRealSpace.o -c src/PmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyMgr.o -c src/ProxyMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyPatch.o -c src/ProxyPatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Rebalancer.o -c src/Rebalancer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RecBisection.o -c src/RecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ReductionMgr.o -c src/ReductionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineOnly.o -c src/RefineOnly.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineTorusLB.o -c src/RefineTorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ScriptTcl.o -c src/ScriptTcl.C
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:165:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:174:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:183:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:192:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:201:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:211:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:240:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:253:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: source",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:274:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:287:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:291:75: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:296:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:302:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:345:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:349:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C:354:61: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:382:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:386:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:392:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:429:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:505:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C:520:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:530:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:557:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:565:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:570:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:580:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:588:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:592:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C:596:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:600:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:610:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:618:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:628:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:634:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:646:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:655:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value too long",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:674:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:691:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:708:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:712:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:721:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not norepeat",TCL_VOLATILE);
^
src/ScriptTcl.C:731:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:736:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:740:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:766:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:774:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:779:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:783:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:808:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C:820:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:839:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:847:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"syntax is 'move <id> to|by {<x> <y> <z>}'",TCL_VOLATILE);
^
src/ScriptTcl.C:857:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:885:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:889:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:894:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"file name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:907:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not withforces or onlyforces",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:946:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:973:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:978:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C:990:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE);
^
src/ScriptTcl.C:1002:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1015:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1020:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1066:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1071:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1088:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1113:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1127:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1140:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1174:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sequencer.o -c src/Sequencer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Set.o -c src/Set.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Settle.o -c src/Settle.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SimParameters.o -c src/SimParameters.C
src/SimParameters.C: In member function 'void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)':
src/SimParameters.C:5384:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case CUBIC: approx_str = "C1 CUBIC"; break;
^
src/SimParameters.C:5385:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC: approx_str = "C1 QUINTIC"; break;
^
src/SimParameters.C:5386:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC2: approx_str = "C2 QUINTIC"; break;
^
src/SimParameters.C:5387:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC: approx_str = "C1 SEPTIC"; break;
^
src/SimParameters.C:5388:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC3: approx_str = "C3 SEPTIC"; break;
^
src/SimParameters.C:5389:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC: approx_str = "C1 NONIC"; break;
^
src/SimParameters.C:5390:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC4: approx_str = "C4 NONIC"; break;
^
src/SimParameters.C:5391:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case C1HERMITE:approx_str = "C1 HERMITE"; break;
^
src/SimParameters.C:5392:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: approx_str = "UNKNOWN"; break;
^
src/SimParameters.C:5395:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR2: split_str = "C2 TAYLOR"; break;
^
src/SimParameters.C:5396:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR3: split_str = "C3 TAYLOR"; break;
^
src/SimParameters.C:5397:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR4: split_str = "C4 TAYLOR"; break;
^
src/SimParameters.C:5398:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR5: split_str = "C5 TAYLOR"; break;
^
src/SimParameters.C:5399:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR6: split_str = "C6 TAYLOR"; break;
^
src/SimParameters.C:5400:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR7: split_str = "C7 TAYLOR"; break;
^
src/SimParameters.C:5401:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR8: split_str = "C8 TAYLOR"; break;
^
src/SimParameters.C:5402:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: split_str = "UNKNOWN"; break;
^
In file included from src/SimParameters.h:21:0,
from src/GridForceGrid.h:14,
from src/Molecule.h:31,
from src/ComputeNonbondedUtil.h:16,
from src/SimParameters.C:21:
src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)':
src/MGridforceParams.h:18:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
#define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams"
^
src/SimParameters.C:5637:25: note: in expansion of macro 'MGRIDFORCEPARAMS_DEFAULTKEY'
char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY;
^
src/SimParameters.C: In member function 'void SimParameters::print_mgrid_params()':
src/SimParameters.C:6054:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char *qcol_msg = "Use atom charge";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SortAtoms.o -c src/SortAtoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sync.o -c src/Sync.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TclCommands.o -c src/TclCommands.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TorusLB.o -c src/TorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/WorkDistrib.o -c src/WorkDistrib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pub3dfft.o -c src/pub3dfft.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/vmdsock.o -c src/vmdsock.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/parm.o -c src/parm.C
src/parm.C: In member function 'int parm::readparm(char*)':
src/parm.C:184:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TITLE"))
^
src/parm.C:194:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"POINTERS"))
^
src/parm.C:318:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ATOM_NAME"))
^
src/parm.C:332:28: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"CHARGE"))
^
src/parm.C:350:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"MASS"))
^
src/parm.C:368:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOM_TYPE_INDEX"))
^
src/parm.C:389:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NUMBER_EXCLUDED_ATOMS"))
^
src/parm.C:410:43: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NONBONDED_PARM_INDEX"))
^
src/parm.C:431:35: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"RESIDUE_LABEL"))
^
src/parm.C:443:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"RESIDUE_POINTER"))
^
src/parm.C:465:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_FORCE_CONSTANT"))
^
src/parm.C:483:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_EQUIL_VALUE"))
^
src/parm.C:501:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_FORCE_CONSTANT"))
^
src/parm.C:519:39: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_EQUIL_VALUE"))
^
src/parm.C:537:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT"))
^
src/parm.C:555:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PERIODICITY"))
^
src/parm.C:573:36: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PHASE"))
^
src/parm.C:591:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"SOLTY"))
^
src/parm.C:610:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_ACOEF"))
^
src/parm.C:629:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_BCOEF"))
^
src/parm.C:650:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_INC_HYDROGEN"))
^
src/parm.C:682:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_WITHOUT_HYDROGEN"))
^
src/parm.C:715:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_INC_HYDROGEN"))
^
src/parm.C:750:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN"))
^
src/parm.C:786:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_INC_HYDROGEN"))
^
src/parm.C:823:49: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN"))
^
src/parm.C:855:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"EXCLUDED_ATOMS_LIST"))
^
src/parm.C:876:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_ACOEF"))
^
src/parm.C:894:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_BCOEF"))
^
src/parm.C:912:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBCUT"))
^
src/parm.C:933:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"AMBER_ATOM_TYPE"))
^
src/parm.C:945:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TREE_CHAIN_CLASSIFICATION"))
^
src/parm.C:957:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"JOIN_ARRAY"))
^
src/parm.C:980:29: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"IROTAT"))
^
src/parm.C:1009:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"SOLVENT_POINTERS"))
^
src/parm.C:1034:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOMS_PER_MOLECULE"))
^
src/parm.C:1050:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOX_DIMENSIONS"))
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/imd.o -c src/imd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CompressPsf.o -c src/CompressPsf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PluginIOMgr.o -c src/PluginIOMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataExchanger.o -c src/DataExchanger.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c
rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"bwjenkins\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/buildinfo.o -c obj/buildinfo.C
const char *namd_build_date = "Thu Dec 16 22:45:06 CST 2021";
const char *namd_build_user = "bwjenkins";
const char *namd_build_machine = "jyc1";
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc -verbose -ld++-option \
'-I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer ' \
"-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast" -language charm++ \
obj/buildinfo.o \
obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o \
\
\
\
\
\
-L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl \
-L/opt/cray/fftw/3.3.4.11/interlagos/lib/lib -lfftw3f \
obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \
\
\
-lm -o namd2
Verbose mode set
Adding file obj/buildinfo.o...
Adding file obj/ComputeMoa.o...
Adding file obj/ComputeMsm.o...
Adding file obj/ComputeMsmMsa.o...
Adding file obj/ComputeMsmSerial.o...
Adding file obj/ComputeFmmSerial.o...
Adding file obj/msm.o...
Adding file obj/msm_longrng.o...
Adding file obj/msm_longrng_sprec.o...
Adding file obj/msm_setup.o...
Adding file obj/msm_shortrng.o...
Adding file obj/msm_shortrng_sprec.o...
Adding file obj/wkfutils.o...
Adding file obj/common.o...
Adding file obj/dcdlib.o...
Adding file obj/erf.o...
Adding file obj/fitrms.o...
Adding file obj/main.o...
Adding file obj/mainfunc.o...
Adding file obj/memusage.o...
Adding file obj/strlib.o...
Adding file obj/AlgSeven.o...
Adding file obj/AlgRecBisection.o...
Adding file obj/AlgNbor.o...
Adding file obj/AtomMap.o...
Adding file obj/BackEnd.o...
Adding file obj/BroadcastMgr.o...
Adding file obj/BroadcastClient.o...
Adding file obj/CollectionMaster.o...
Adding file obj/CollectionMgr.o...
Adding file obj/Communicate.o...
Adding file obj/Compute.o...
Adding file obj/ComputeAngles.o...
Adding file obj/ComputeAniso.o...
Adding file obj/ComputeBonds.o...
Adding file obj/ComputeConsForce.o...
Adding file obj/ComputeConsForceMsgs.o...
Adding file obj/ComputeCrossterms.o...
Adding file obj/ComputeCylindricalBC.o...
Adding file obj/ComputeDihedrals.o...
Adding file obj/ComputeDPME.o...
Adding file obj/ComputeDPMEMsgs.o...
Adding file obj/ComputeDPMTA.o...
Adding file obj/ComputeEField.o...
Adding file obj/ComputeEwald.o...
Adding file obj/ComputeExt.o...
Adding file obj/ComputeGBISser.o...
Adding file obj/ComputeGBIS.o...
Adding file obj/ComputeGromacsPair.o...
Adding file obj/ComputeLCPO.o...
Adding file obj/ComputeFullDirect.o...
Adding file obj/ComputeHomePatch.o...
Adding file obj/ComputeHomePatches.o...
Adding file obj/ComputeImpropers.o...
Adding file obj/ComputeGlobal.o...
Adding file obj/ComputeGlobalMsgs.o...
Adding file obj/ComputeGridForce.o...
Adding file obj/ComputeMap.o...
Adding file obj/ComputeMgr.o...
Adding file obj/ComputeNonbondedSelf.o...
Adding file obj/ComputeNonbondedPair.o...
Adding file obj/ComputeNonbondedUtil.o...
Adding file obj/ComputeNonbondedStd.o...
Adding file obj/ComputeNonbondedFEP.o...
Adding file obj/ComputeNonbondedGo.o...
Adding file obj/ComputeNonbondedTI.o...
Adding file obj/ComputeNonbondedLES.o...
Adding file obj/ComputeNonbondedPProf.o...
Adding file obj/ComputeNonbondedTabEnergies.o...
Adding file obj/ComputeNonbondedCUDA.o...
Adding file obj/ComputeNonbondedCUDAExcl.o...
Adding file obj/ComputeNonbondedMIC.o...
Adding file obj/ComputeNonbondedMICKernel.o...
Adding file obj/ComputePatch.o...
Adding file obj/ComputePatchPair.o...
Adding file obj/ComputePme.o...
Adding file obj/OptPme.o...
Adding file obj/OptPmeRealSpace.o...
Adding file obj/ComputeRestraints.o...
Adding file obj/ComputeSphericalBC.o...
Adding file obj/ComputeStir.o...
Adding file obj/ComputeTclBC.o...
Adding file obj/ComputeThole.o...
Adding file obj/ConfigList.o...
Adding file obj/Controller.o...
Adding file obj/ccsinterface.o...
Adding file obj/DataStream.o...
Adding file obj/DumpBench.o...
Adding file obj/FreeEnergyAssert.o...
Adding file obj/FreeEnergyGroup.o...
Adding file obj/FreeEnergyLambda.o...
Adding file obj/FreeEnergyLambdMgr.o...
Adding file obj/FreeEnergyParse.o...
Adding file obj/FreeEnergyRestrain.o...
Adding file obj/FreeEnergyRMgr.o...
Adding file obj/FreeEnergyVector.o...
Adding file obj/fstream_namd.o...
Adding file obj/GlobalMaster.o...
Adding file obj/GlobalMasterServer.o...
Adding file obj/GlobalMasterTest.o...
Adding file obj/GlobalMasterIMD.o...
Adding file obj/GlobalMasterTcl.o...
Adding file obj/GlobalMasterSMD.o...
Adding file obj/GlobalMasterTMD.o...
Adding file obj/Matrix4Symmetry.o...
Adding file obj/GlobalMasterSymmetry.o...
Adding file obj/GlobalMasterFreeEnergy.o...
Adding file obj/GlobalMasterEasy.o...
Adding file obj/GlobalMasterMisc.o...
Adding file obj/colvar.o...
Adding file obj/colvaratoms.o...
Adding file obj/colvarbias.o...
Adding file obj/colvarbias_abf.o...
Adding file obj/colvarbias_alb.o...
Adding file obj/colvarbias_meta.o...
Adding file obj/colvarbias_restraint.o...
Adding file obj/colvarcomp.o...
Adding file obj/colvarcomp_angles.o...
Adding file obj/colvarcomp_coordnums.o...
Adding file obj/colvarcomp_distances.o...
Adding file obj/colvarcomp_protein.o...
Adding file obj/colvarcomp_rotations.o...
Adding file obj/colvargrid.o...
Adding file obj/colvarmodule.o...
Adding file obj/colvarparse.o...
Adding file obj/colvarproxy_namd.o...
Adding file obj/colvarscript.o...
Adding file obj/colvartypes.o...
Adding file obj/colvarvalue.o...
Adding file obj/GridForceGrid.o...
Adding file obj/GromacsTopFile.o...
Adding file obj/heap.o...
Adding file obj/HomePatch.o...
Adding file obj/IMDOutput.o...
Adding file obj/InfoStream.o...
Adding file obj/LdbCoordinator.o...
Adding file obj/LJTable.o...
Adding file obj/Measure.o...
Adding file obj/MGridforceParams.o...
Adding file obj/MStream.o...
Adding file obj/MigrateAtomsMsg.o...
Adding file obj/Molecule.o...
Adding file obj/Molecule2.o...
Adding file obj/GoMolecule.o...
Adding file obj/NamdCentLB.o...
Adding file obj/NamdNborLB.o...
Adding file obj/NamdHybridLB.o...
Adding file obj/NamdDummyLB.o...
Adding file obj/NamdState.o...
Adding file obj/NamdOneTools.o...
Adding file obj/Node.o...
Adding file obj/Output.o...
Adding file obj/Parameters.o...
Adding file obj/ParseOptions.o...
Adding file obj/Patch.o...
Adding file obj/PatchMgr.o...
Adding file obj/PatchMap.o...
Adding file obj/PDB.o...
Adding file obj/PDBData.o...
Adding file obj/PmeKSpace.o...
Adding file obj/PmeRealSpace.o...
Adding file obj/ProcessorPrivate.o...
Adding file obj/ProxyMgr.o...
Adding file obj/ProxyPatch.o...
Adding file obj/Rebalancer.o...
Adding file obj/RecBisection.o...
Adding file obj/ReductionMgr.o...
Adding file obj/RefineOnly.o...
Adding file obj/RefineTorusLB.o...
Adding file obj/ScriptTcl.o...
Adding file obj/Sequencer.o...
Adding file obj/Set.o...
Adding file obj/Settle.o...
Adding file obj/SimParameters.o...
Adding file obj/SortAtoms.o...
Adding file obj/Sync.o...
Adding file obj/TclCommands.o...
Adding file obj/TorusLB.o...
Adding file obj/WorkDistrib.o...
Adding file obj/pub3dfft.o...
Adding file obj/vmdsock.o...
Adding file obj/parm.o...
Adding file obj/imd.o...
Adding file obj/CompressPsf.o...
Adding file obj/PluginIOMgr.o...
Adding file obj/DataExchanger.o...
Adding file obj/ParallelIOMgr.o...
Adding file obj/dcdplugin.o...
Adding file obj/jsplugin.o...
Adding file obj/namdbinplugin.o...
Adding file obj/pdbplugin.o...
Adding file obj/psfplugin.o...
OpenMP support not enabled
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete ------------
Adding registration for module NeighborLB
Adding registration for module HybridLB
Adding registration for module RefineLB
Adding registration for module GreedyLB
Adding registration for module CkMulticast
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -U_FORTIFY_SOURCE -c moduleinit8207.C -o moduleinit8207.o
charmc> All libraries are: -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit8207.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -rdynamic -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -L/opt/cray/fftw/3.3.4.11/interlagos/lib/lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -o namd2 -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit8207.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing rm -f charmrun
charmc: Executing cp -p /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
rm -f moduleinit8207.C moduleinit8207.o
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_main.o -c sb/src/tcl_main.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_file.o -c sb/src/charmm_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/extract_alias.o -c sb/src/extract_alias.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hash.o -c sb/src/hash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hasharray.o -c sb/src/hasharray.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/memarena.o -c sb/src/memarena.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file.o -c sb/src/pdb_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file.o -c sb/src/psf_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_defs.o -c sb/src/topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol.o -c sb/src/topo_mol.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/stringhash.o -c sb/src/stringhash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl -lm
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/sortreplicas.o -c src/sortreplicas.c
src/sortreplicas.c: In function 'main':
src/sortreplicas.c:52:5: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/sortreplicas.c:52:5: warning: incompatible implicit declaration of built-in function 'exit'
src/sortreplicas.c:52:5: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:55:18: warning: implicit declaration of function 'atoi' [-Wimplicit-function-declaration]
num_replicas = atoi(argv[2]);
^
src/sortreplicas.c:85:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:85:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:92:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:92:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:102:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:102:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:110:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:110:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:131:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:131:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:138:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:138:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:146:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:146:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:172:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:172:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:178:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:178:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:188:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:188:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:193:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:193:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:219:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:219:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:225:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:225:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:259:3: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration]
free(frame.coords);
^
src/sortreplicas.c:259:3: warning: incompatible implicit declaration of built-in function 'free'
src/sortreplicas.c:259:3: note: include '<stdlib.h>' or provide a declaration of 'free'
src/sortreplicas.c:281:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/sortreplicas.c:281:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o sortreplicas obj/sortreplicas.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -lm
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipdcd src/flipdcd.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \
chmod +x flipdcd
src/flipdcd.c: In function 'main':
src/flipdcd.c:42:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipdcd.c:42:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipdcd.c:42:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipdcd.c:47:9: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration]
if ((strncmp(argv[argcount],"-S",2) == 0) || (strncmp(argv[argcount],"-s",2) == 0)){
^
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipbinpdb src/flipbinpdb.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \
chmod +x flipbinpdb
src/flipbinpdb.c: In function 'main':
src/flipbinpdb.c:30:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipbinpdb.c:30:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipbinpdb.c:30:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:35:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:35:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:40:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:40:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:47:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:47:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:53:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:53:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:64:1: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/flipbinpdb.c:64:1: note: include '<stdlib.h>' or provide a declaration of 'exit'
cp /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
if [ $? -ne 0 ] ; then
echo "$PACKAGE make failed"
exit 1
fi
mkdir $SW_BLDDIR/bin
mkdir: cannot create directory `/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin': File exists
cp namd2 $SW_BLDDIR/bin
cp charmrun $SW_BLDDIR/bin
cp flipbinpdb $SW_BLDDIR/bin
cp flipdcd $SW_BLDDIR/bin
cp psfgen $SW_BLDDIR/bin
cd ../
############################### if this far, return 0
exit 0
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/rebuild : passed (0)
[SSH] completed
[SSH] exit-status: 0
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"
echo $PATH $SW_CONFIG $PYTHONPATH SW_WORKDIR > /dev/null
export SW_CONFIG=$SW_CONFIG
export SW_WORKDIR=$SW_WORKDIR
cd $SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swtestwait
pwd
chmod -R 755 $SW_ROOT
# recalculate the cputime memory and wallclock file contents since the retest script is broken
~arnoldg/namd/findvals.sh
ls -lt
[SSH] executing...
Submitted job 598592.jyc is running. Following .running ...
598592.jyc
Charm++> Running on Gemini (GNI) with 4 processes
Charm++> static SMSG
Charm++> SMSG memory: 19.8KB
Charm++> memory pool init block size: 8MB, total memory pool limit 0MB (0 means no limit)
Charm++> memory pool registered memory limit: 200000MB, send limit: 100000MB
Charm++> Cray TLB page size: 2048K
Charm++> Running in non-SMP mode: numPes 4
Charm++> Using recursive bisection (scheme 3) for topology aware partitions
Converse/Charm++ Commit ID: v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (32-way SMP).
Info: NAMD 2.10 for CRAY-XT-ugni
Info:
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info:
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info:
Info: Based on Charm++/Converse 60601 for gni-crayxc
Info: Built Thu Dec 16 22:45:06 CST 2021 by bwjenkins on jyc1
Info: Running on 4 processors, 4 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.00674814 s
Info: 3103.79 MB of memory in use based on /proc/self/stat
Info: Configuration file is apoa1.namd
Info: Working in the current directory /mnt/abc/scratch/system/bwjenkins/sw_workdir/retest/2021-12-16T22:45:46.990040/namd_2.10_cle5.2_gnu5.1.0
TCL: Suspending until startup complete.
Info: SIMULATION PARAMETERS:
Info: TIMESTEP 1
Info: NUMBER OF STEPS 500
Info: STEPS PER CYCLE 20
Info: PERIODIC CELL BASIS 1 108.861 0 0
Info: PERIODIC CELL BASIS 2 0 108.861 0
Info: PERIODIC CELL BASIS 3 0 0 77.758
Info: PERIODIC CELL CENTER 0 0 0
Info: LOAD BALANCER Centralized
Info: LOAD BALANCING STRATEGY New Load Balancers -- DEFAULT
Info: LDB PERIOD 4000 steps
Info: FIRST LDB TIMESTEP 100
Info: LAST LDB TIMESTEP -1
Info: LDB BACKGROUND SCALING 1
Info: HOM BACKGROUND SCALING 1
Info: PME BACKGROUND SCALING 1
Info: MIN ATOMS PER PATCH 40
Info: INITIAL TEMPERATURE 300
Info: CENTER OF MASS MOVING INITIALLY? NO
Info: DIELECTRIC 1
Info: EXCLUDE SCALED ONE-FOUR
Info: 1-4 ELECTROSTATICS SCALED BY 1
Info: MODIFIED 1-4 VDW PARAMETERS WILL BE USED
Info: NO DCD TRAJECTORY OUTPUT
Info: NO EXTENDED SYSTEM TRAJECTORY OUTPUT
Info: NO VELOCITY DCD OUTPUT
Info: NO FORCE DCD OUTPUT
Info: OUTPUT FILENAME /usr/tmp/apoa1-out
Info: BINARY OUTPUT FILES WILL BE USED
Info: NO RESTART FILE
Info: SWITCHING ACTIVE
Info: SWITCHING ON 10
Info: SWITCHING OFF 12
Info: PAIRLIST DISTANCE 13.5
Info: PAIRLIST SHRINK RATE 0.01
Info: PAIRLIST GROW RATE 0.01
Info: PAIRLIST TRIGGER 0.3
Info: PAIRLISTS PER CYCLE 2
Info: PAIRLISTS ENABLED
Info: MARGIN 0
Info: HYDROGEN GROUP CUTOFF 2.5
Info: PATCH DIMENSION 16
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: TIMING OUTPUT STEPS 20
Info: PARTICLE MESH EWALD (PME) ACTIVE
Info: PME TOLERANCE 1e-06
Info: PME EWALD COEFFICIENT 0.257952
Info: PME INTERPOLATION ORDER 4
Info: PME GRID DIMENSIONS 108 108 80
Info: PME MAXIMUM GRID SPACING 1.5
Info: Attempting to read FFTW data from system
Info: Attempting to read FFTW data from FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: Optimizing 6 FFT steps. 1... 2... 3... 4... 5... 6... Done.
Info: Writing FFTW data to FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: FULL ELECTROSTATIC EVALUATION FREQUENCY 4
Info: USING VERLET I (r-RESPA) MTS SCHEME.
Info: C1 SPLITTING OF LONG RANGE ELECTROSTATICS
Info: PLACING ATOMS IN PATCHES BY HYDROGEN GROUPS
Info: RANDOM NUMBER SEED 74269
Info: USE HYDROGEN BONDS? NO
Info: COORDINATE PDB apoa1.pdb
Info: STRUCTURE FILE apoa1.psf
Info: PARAMETER file: XPLOR format! (default)
Info: PARAMETERS par_all22_prot_lipid.xplor
Info: PARAMETERS par_all22_popc.xplor
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.84498
Info: TIME FOR READING PDB FILE: 0.500216
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.43598 s, 3129.55 MB of memory in use
Info: Startup phase 0 took 0.000301877 s, 3129.55 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.19936 s, 3151.57 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101342 s, 3151.57 MB of memory in use
Info: Startup phase 3 took 0.000128346 s, 3151.57 MB of memory in use
Info: Startup phase 4 took 0.000404345 s, 3151.57 MB of memory in use
Info: Startup phase 5 took 0.000135713 s, 3151.57 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0449541 s, 3170.4 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.416517 s, 3170.4 MB of memory in use
Info: Startup phase 8 took 0.00770786 s, 3178.4 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000499126 s, 3178.4 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00572599 s, 3178.4 MB of memory in use
Info: Startup phase 11 took 0.000227259 s, 3178.4 MB of memory in use
Info: Startup phase 12 took 0.000209876 s, 3178.4 MB of memory in use
Info: Finished startup at 7.11316 s, 3178.4 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8940 24849.5776 0.0000 0.0000 58070.8721 -222575.0715 211.2459 -280645.9435 -223447.0521 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2977 25088.6262 0.0000 0.0000 59867.7844 -223079.1305 217.7825 -282946.9149 -223360.7367 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2220 25459.6294 0.0000 0.0000 52507.9934 -222544.6645 191.0096 -275052.6578 -223356.7149 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0127 25887.6534 0.0000 0.0000 42953.1287 -221679.2679 156.2517 -264632.3966 -223352.8551 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3010 26266.0174 0.0000 0.0000 42465.0707 -221790.4528 154.4763 -264255.5236 -223296.4330 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9402 26591.7245 0.0000 0.0000 50541.8171 -222627.2004 183.8572 -273169.0175 -223230.8086 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2671 26963.6414 0.0000 0.0000 55373.6415 -223162.5380 201.4341 -278536.1795 -223232.0103 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0265 27435.0793 0.0000 0.0000 49899.6949 -222651.4169 181.5214 -272551.1118 -223231.3828 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
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LDB: =============== DONE WITH MIGRATION ================ 16.6627
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 54.6409
LDB: Largest compute 200 load 0.434408 is 1.2% of average load 36.841619
LDB: Average compute 0.051607 is 0.1% of average load 36.841619
LDB: Partitioning computes with target load 3.684162
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.055845
LDB: ============== END OF LOAD BALANCING =============== 54.643
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.6439
Info: Initial time: 4 CPUs 0.474759 s/step 5.4949 days/ns 3221.52 MB memory
TIMING: 100 CPU: 48.4471, 0.473851/step Wall: 48.4471, 0.473851/step, 0.0526502 hours remaining, 3221.523438 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 64.1038
LDB: ============== END OF LOAD BALANCING =============== 64.1039
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 64.1043
TIMING: 120 CPU: 57.9072, 0.473004/step Wall: 57.9072, 0.473004/step, 0.0499282 hours remaining, 3221.652344 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 138 21874.8525 19195.4802 5730.8549 192.8766 -333203.4343 21083.5324 0.0000 0.0000 42784.9638 -222340.8738 155.6399 -265125.8377 -222213.1815 155.6399 -2704.7054 -2927.3525 921491.4634 -2704.7054 -2927.3525
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TIMING: 140 CPU: 67.3599, 0.472635/step Wall: 67.3599, 0.472635/step, 0.0472635 hours remaining, 3221.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 160 CPU: 76.7997, 0.471991/step Wall: 76.7997, 0.471991/step, 0.0445769 hours remaining, 3222.093750 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 180 CPU: 86.2301, 0.471521/step Wall: 86.2301, 0.471521/step, 0.041913 hours remaining, 3222.234375 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 101.858
LDB: Largest compute 200 load 0.429719 is 1.2% of average load 36.660865
LDB: Average compute 0.051352 is 0.1% of average load 36.660865
LDB: TIME 101.859 LOAD: AVG 36.6609 MAX 37.7531 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.55 MB
LDB: TIME 101.862 LOAD: AVG 36.6609 MAX 37.6574 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.55 MB
LDB: ============== END OF LOAD BALANCING =============== 101.863
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.867
Info: Initial time: 4 CPUs 0.472085 s/step 5.46395 days/ns 3223.52 MB memory
TIMING: 200 CPU: 95.6655, 0.471768/step Wall: 95.6655, 0.471768/step, 0.039314 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 220 CPU: 105.113, 0.472354/step Wall: 105.113, 0.472354/step, 0.0367387 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 240 CPU: 114.549, 0.471829/step Wall: 114.549, 0.471829/step, 0.0340765 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 244 18822.2463 19849.3934 5737.4544 169.6534 -334482.6005 21720.5675 0.0000 0.0000 45629.1661 -222554.1194 165.9864 -268183.2854 -222078.7770 165.9864 -2667.7296 -2573.2149 921491.4634 -2667.7296 -2573.2149
ENERGY: 245 20148.2367 19811.7599 5725.7784 171.4559 -334087.5942 21701.2469 0.0000 0.0000 44168.5247 -222360.5917 160.6730 -266529.1163 -222068.6365 160.6730 -1771.6900 -2533.5454 921491.4634 -1771.6900 -2533.5454
ENERGY: 246 20878.5480 19853.7024 5716.8932 174.1558 -334213.1202 21705.0850 0.0000 0.0000 43600.4181 -222284.3178 158.6063 -265884.7359 -222067.4295 158.6063 -1173.7929 -2523.3911 921491.4634 -1173.7929 -2523.3911
ENERGY: 247 19868.5286 19979.6440 5712.7400 177.5412 -334802.1839 21719.8454 0.0000 0.0000 44912.1911 -222431.6936 163.3782 -267343.8848 -222068.1393 163.3782 -983.0000 -2552.5930 921491.4634 -983.0000 -2552.5930
ENERGY: 248 19035.4925 20164.4296 5713.8450 181.3144 -335623.1352 21746.4310 0.0000 0.0000 46185.9361 -222595.6866 168.0117 -268781.6227 -222090.3128 168.0117 -1359.1247 -2608.3065 921491.4634 -1359.1247 -2608.3065
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 252 21994.9041 20013.1599 5733.2541 193.8023 -336093.2676 21826.9294 0.0000 0.0000 43905.3720 -222425.8459 159.7157 -266331.2179 -222091.3307 159.7157 -3843.4681 -2758.0338 921491.4634 -3843.4681 -2758.0338
ENERGY: 253 19499.8636 19667.1121 5729.5496 195.2411 -334977.1807 21784.0535 0.0000 0.0000 45520.0192 -222581.3415 165.5893 -268101.3607 -222082.7208 165.5893 -3300.1272 -2735.8132 921491.4634 -3300.1272 -2735.8132
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ENERGY: 255 20324.2310 19109.4101 5707.6062 196.0620 -333099.9234 21746.1514 0.0000 0.0000 43667.4213 -222349.0413 158.8501 -266016.4626 -222078.3978 158.8501 -2282.5424 -2662.7814 921491.4634 -2282.5424 -2662.7814
ENERGY: 256 20899.4409 18950.9577 5693.4518 195.6570 -332975.5970 21757.6847 0.0000 0.0000 43181.1613 -222297.2436 157.0812 -265478.4049 -222071.2738 157.0812 -2042.2408 -2664.5198 921491.4634 -2042.2408 -2664.5198
ENERGY: 257 20029.5653 18878.1873 5681.1759 194.7976 -333481.0037 21780.2418 0.0000 0.0000 44488.5469 -222428.4889 161.8371 -266917.0358 -222060.1682 161.8371 -2035.5362 -2692.1441 921491.4634 -2035.5362 -2692.1441
ENERGY: 258 19453.5867 18882.0667 5673.2911 193.6684 -334373.1542 21817.5077 0.0000 0.0000 45796.2577 -222556.7760 166.5942 -268353.0337 -222062.0606 166.5942 -2331.2328 -2737.1919 921491.4634 -2331.2328 -2737.1919
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TIMING: 260 CPU: 123.978, 0.471441/step Wall: 123.978, 0.471441/step, 0.0314294 hours remaining, 3223.867188 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 262 21606.2724 19814.6777 5694.0656 188.7122 -336291.7858 21947.6073 0.0000 0.0000 44601.6346 -222438.8160 162.2485 -267040.4506 -222052.4323 162.2485 -3214.7560 -2810.4637 921491.4634 -3214.7560 -2810.4637
ENERGY: 263 19781.1228 20140.5621 5703.8103 187.9445 -335614.9712 21924.4739 0.0000 0.0000 45349.7771 -222527.2804 164.9700 -267877.0575 -222051.1547 164.9700 -2647.8115 -2773.3903 921491.4634 -2647.8115 -2773.3903
ENERGY: 264 19385.2260 20436.4304 5710.6950 187.5052 -334855.9511 21907.7771 0.0000 0.0000 44751.4784 -222476.8389 162.7936 -267228.3173 -222069.1984 162.7936 -2191.1926 -2723.5294 921491.4634 -2191.1926 -2723.5294
ENERGY: 265 19946.8414 20681.9925 5713.6242 187.4392 -334395.6631 21906.0162 0.0000 0.0000 43607.6375 -222352.1121 158.6326 -265959.7496 -222054.3372 158.6326 -2038.0573 -2683.6035 921491.4634 -2038.0573 -2683.6035
ENERGY: 266 20048.7898 20788.8700 5712.1327 187.6137 -334399.4576 21914.4804 0.0000 0.0000 43399.3797 -222348.1913 157.8750 -265747.5710 -222054.3635 157.8750 -2130.7241 -2664.5957 921491.4634 -2130.7241 -2664.5957
ENERGY: 267 19648.0905 20691.2678 5707.0583 187.8501 -334831.4855 21930.8373 0.0000 0.0000 44220.2168 -222446.1646 160.8610 -266666.3814 -222055.6585 160.8610 -2435.4236 -2662.6783 921491.4634 -2435.4236 -2662.6783
ENERGY: 268 19962.9161 20375.7516 5700.1930 187.9286 -335513.7448 21959.1257 0.0000 0.0000 44823.5376 -222504.2923 163.0557 -267327.8299 -222075.9874 163.0557 -2903.2126 -2658.6181 921491.4634 -2903.2126 -2658.6181
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 270 22620.1933 19450.9168 5690.3173 187.1618 -336650.6773 22028.8070 0.0000 0.0000 44308.0075 -222365.2737 161.1804 -266673.2812 -222067.0433 161.1804 -3583.3634 -2617.7583 921491.4634 -3583.3634 -2617.7583
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ENERGY: 272 21021.5584 18896.0661 5692.8269 184.9335 -335921.4614 22015.0579 0.0000 0.0000 45607.7077 -222503.3109 165.9083 -268111.0186 -222081.1571 165.9083 -2551.9684 -2501.8805 921491.4634 -2551.9684 -2501.8805
ENERGY: 273 20123.2136 18932.9080 5697.5118 183.8526 -334925.7011 21985.5295 0.0000 0.0000 45502.7162 -222499.9695 165.5264 -268002.6856 -222069.0458 165.5264 -1837.1975 -2434.6760 921491.4634 -1837.1975 -2434.6760
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ENERGY: 276 19401.8501 19594.7509 5701.2547 182.4904 -333292.1281 21971.0409 0.0000 0.0000 44028.5272 -222412.2139 160.1637 -266440.7412 -222072.9394 160.1637 -1580.1300 -2417.6041 921491.4634 -1580.1300 -2417.6041
ENERGY: 277 19149.2972 19724.7161 5695.5210 182.9396 -333864.3453 21997.2386 0.0000 0.0000 44632.8112 -222481.8217 162.3619 -267114.6328 -222061.0987 162.3619 -2311.7545 -2498.0545 921491.4634 -2311.7545 -2498.0545
ENERGY: 278 20199.4577 19713.7761 5686.9122 183.6585 -334821.1003 22041.3358 0.0000 0.0000 44532.2540 -222463.7060 161.9961 -266995.9600 -222063.4130 161.9961 -3254.8157 -2593.7696 921491.4634 -3254.8157 -2593.7696
ENERGY: 279 21984.3649 19593.9432 5677.5176 184.5187 -335888.5800 22096.4198 0.0000 0.0000 43975.0880 -222376.7278 159.9693 -266351.8158 -222065.2023 159.9693 -4044.3213 -2682.8389 921491.4634 -4044.3213 -2682.8389
TIMING: 280 CPU: 133.391, 0.470657/step Wall: 133.391, 0.470657/step, 0.0287624 hours remaining, 3223.867188 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 280 22859.3230 19458.4367 5670.0026 185.3899 -336752.6633 22145.1353 0.0000 0.0000 44066.7339 -222367.6419 160.3027 -266434.3758 -222073.4247 160.3027 -4286.3893 -2748.0546 921491.4634 -4286.3893 -2748.0546
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ENERGY: 282 20943.7898 19615.5379 5669.9796 186.8360 -336942.5035 22176.7653 0.0000 0.0000 45823.3371 -222526.2578 166.6927 -268349.5949 -222063.3316 166.6927 -2992.3271 -2779.3668 921491.4634 -2992.3271 -2779.3668
ENERGY: 283 20432.1060 19966.6614 5678.8137 187.1634 -336251.9201 22171.0647 0.0000 0.0000 45328.8522 -222487.2587 164.8939 -267816.1109 -222060.8460 164.8939 -2008.7736 -2748.2306 921491.4634 -2008.7736 -2748.2306
ENERGY: 284 20506.3999 20401.8821 5692.0830 187.1346 -335412.6297 22166.2908 0.0000 0.0000 44071.4481 -222387.3911 160.3198 -266458.8392 -222061.5537 160.3198 -1267.2790 -2712.3901 921491.4634 -1267.2790 -2712.3901
ENERGY: 285 20203.3287 20789.9629 5707.3565 186.7145 -334827.1962 22167.0165 0.0000 0.0000 43418.2632 -222354.5542 157.9437 -265772.8173 -222053.5963 157.9437 -1010.8437 -2700.0819 921491.4634 -1010.8437 -2700.0819
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 149.017
LDB: Largest compute 200 load 0.524838 is 1.1% of average load 45.781358
LDB: Average compute 0.064134 is 0.1% of average load 45.781358
LDB: TIME 149.019 LOAD: AVG 45.7814 MAX 47.1509 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.29 MB
LDB: TIME 149.02 LOAD: AVG 45.7814 MAX 47.1509 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3224.29 MB
LDB: TIME 149.025 LOAD: AVG 45.7814 MAX 46.1401 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: ============== END OF LOAD BALANCING =============== 149.026
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 149.027
Info: Initial time: 4 CPUs 0.471156 s/step 5.4532 days/ns 3224.29 MB memory
TIMING: 300 CPU: 142.791, 0.469984/step Wall: 142.791, 0.469985/step, 0.0261103 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 320 CPU: 151.98, 0.459478/step Wall: 151.98, 0.459478/step, 0.0229739 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 340 CPU: 161.159, 0.458951/step Wall: 161.159, 0.458951/step, 0.0203978 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 360 CPU: 170.335, 0.458772/step Wall: 170.335, 0.458772/step, 0.0178411 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 368 20561.5937 19748.2121 5739.6692 179.8275 -335728.0877 22808.6652 0.0000 0.0000 44272.8405 -222417.2795 161.0524 -266690.1200 -222068.2914 161.0524 -2928.4886 -2487.3069 921491.4634 -2928.4886 -2487.3069
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 377 20646.4608 20251.1593 5706.5522 182.3248 -335763.5802 22794.3776 0.0000 0.0000 43848.2752 -222334.4303 159.5080 -266182.7055 -222041.4014 159.5080 -1819.5856 -2472.4985 921491.4634 -1819.5856 -2472.4985
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TIMING: 380 CPU: 179.503, 0.458418/step Wall: 179.503, 0.458418/step, 0.0152806 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 384 19625.4111 19596.0353 5710.5350 179.0647 -336052.0487 22884.2538 0.0000 0.0000 45539.1830 -222517.5659 165.6590 -268056.7489 -222062.0926 165.6590 -569.2377 -2166.9356 921491.4634 -569.2377 -2166.9356
ENERGY: 385 19327.8178 19356.8911 5707.7752 177.4354 -335210.6402 22871.6148 0.0000 0.0000 45299.7168 -222469.3890 164.7879 -267769.1058 -222051.0994 164.7879 215.3517 -2064.3635 921491.4634 215.3517 -2064.3635
ENERGY: 386 19981.2272 19220.9464 5707.6638 175.9384 -334865.1819 22880.7962 0.0000 0.0000 44519.8583 -222378.7516 161.9510 -266898.6099 -222051.0438 161.9510 122.6672 -2011.2426 921491.4634 122.6672 -2011.2426
ENERGY: 387 20367.2860 19202.4843 5710.9355 174.6759 -335109.8729 22905.2749 0.0000 0.0000 44377.1813 -222372.0350 161.4320 -266749.2163 -222053.0051 161.4320 -738.9583 -2019.1687 921491.4634 -738.9583 -2019.1687
ENERGY: 388 20282.3987 19280.0166 5717.2935 173.7038 -335824.1524 22938.2905 0.0000 0.0000 44972.7760 -222459.6733 163.5986 -267432.4493 -222067.4820 163.5986 -2063.8554 -2076.2821 921491.4634 -2063.8554 -2076.2821
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 398 19692.8116 20133.3591 5716.9814 176.0456 -336812.3384 23014.0591 0.0000 0.0000 45592.7321 -222486.3496 165.8538 -268079.0817 -222045.7222 165.8538 -1710.2235 -2443.6963 921491.4634 -1710.2235 -2443.6963
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LDB: ============= START OF LOAD BALANCING ============== 194.917
LDB: Largest compute 230 load 0.531014 is 1.2% of average load 45.756312
LDB: Average compute 0.064036 is 0.1% of average load 45.756312
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.29 MB
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: ============== END OF LOAD BALANCING =============== 194.92
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.921
Info: Benchmark time: 4 CPUs 0.45884 s/step 5.31065 days/ns 3224.29 MB memory
TIMING: 400 CPU: 188.679, 0.458786/step Wall: 188.679, 0.458786/step, 0.0127441 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 402 22444.0480 19835.9108 5715.8942 173.8391 -338107.6289 23109.6383 0.0000 0.0000 44436.8094 -222391.4891 161.6489 -266828.2985 -222049.2227 161.6489 -4939.3795 -2681.7024 921491.4634 -4939.3795 -2681.7024
ENERGY: 403 20784.9693 19778.4827 5715.7218 174.2695 -337239.9784 23077.8406 0.0000 0.0000 45225.5959 -222483.0985 164.5183 -267708.6944 -222046.6855 164.5183 -3613.5977 -2605.7428 921491.4634 -3613.5977 -2605.7428
ENERGY: 404 19687.5951 19735.4027 5713.8114 175.5084 -336169.1137 23038.2904 0.0000 0.0000 45313.8389 -222504.6667 164.8393 -267818.5056 -222060.2369 164.8393 -1967.0744 -2494.0437 921491.4634 -1967.0744 -2494.0437
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ENERGY: 408 19735.8469 19387.6644 5692.2152 187.5226 -335902.8217 23017.8176 0.0000 0.0000 45394.4120 -222487.3430 165.1324 -267881.7550 -222063.5309 165.1324 -920.8281 -2294.1555 921491.4634 -920.8281 -2294.1555
ENERGY: 409 20350.1189 19376.4607 5688.4775 191.1593 -336896.6846 23057.9925 0.0000 0.0000 45733.6057 -222498.8701 166.3663 -268232.4758 -222051.6702 166.3663 -2367.4920 -2346.9324 921491.4634 -2367.4920 -2346.9324
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 410 21850.5213 19470.1803 5687.6650 194.4179 -337813.1845 23106.2031 0.0000 0.0000 45077.0712 -222427.1257 163.9780 -267504.1969 -222054.6425 163.9780 -3838.6212 -2402.0239 921491.4634 -3838.6212 -2402.0239
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ENERGY: 412 22535.8950 19878.8221 5694.3234 198.8205 -338356.4974 23146.2937 0.0000 0.0000 44499.5085 -222402.8342 161.8770 -266902.3427 -222068.4598 161.8770 -4717.2139 -2436.3028 921491.4634 -4717.2139 -2436.3028
ENERGY: 413 21130.1415 20138.5248 5699.9334 199.7191 -337872.5318 23125.1117 0.0000 0.0000 45113.2144 -222465.8869 164.1095 -267579.1012 -222055.3452 164.1095 -3850.6269 -2398.9549 921491.4634 -3850.6269 -2398.9549
ENERGY: 414 19987.3855 20381.5505 5705.1135 199.5118 -337122.7796 23094.4558 0.0000 0.0000 45271.6528 -222483.1097 164.6858 -267754.7624 -222052.1623 164.6858 -2501.3241 -2333.9464 921491.4634 -2501.3241 -2333.9464
ENERGY: 415 19745.2666 20572.1258 5708.7452 198.1487 -336456.1970 23071.1991 0.0000 0.0000 44733.2273 -222427.4844 162.7272 -267160.7116 -222049.0345 162.7272 -1174.6451 -2266.5615 921491.4634 -1174.6451 -2266.5615
ENERGY: 416 19942.3169 20661.9894 5710.0857 195.6953 -336157.5859 23063.1714 0.0000 0.0000 44200.2850 -222384.0420 160.7885 -266584.3271 -222052.9643 160.7885 -282.7612 -2224.6897 921491.4634 -282.7612 -2224.6897
ENERGY: 417 20031.3748 20631.3207 5709.0494 192.4696 -336373.1072 23072.1097 0.0000 0.0000 44338.4621 -222398.3209 161.2911 -266736.7830 -222044.6993 161.2911 -112.4553 -2227.1699 921491.4634 -112.4553 -2227.1699
ENERGY: 418 20154.6647 20457.0907 5705.5848 188.6536 -336970.7865 23098.6724 0.0000 0.0000 44915.1424 -222450.9778 163.3889 -267366.1202 -222046.7092 163.3889 -671.8546 -2269.9921 921491.4634 -671.8546 -2269.9921
ENERGY: 419 20790.7633 20185.5522 5700.4811 184.6054 -337717.8754 23139.8021 0.0000 0.0000 45250.3101 -222466.3613 164.6082 -267716.6713 -222049.5950 164.6082 -1783.9423 -2336.6465 921491.4634 -1783.9423 -2336.6465
TIMING: 420 CPU: 197.822, 0.45716/step Wall: 197.822, 0.45716/step, 0.0101591 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 420 21812.8762 19887.3909 5695.0415 180.6770 -338321.5509 23183.0572 0.0000 0.0000 45121.9775 -222440.5306 164.1414 -267562.5081 -222061.1149 164.1414 -3051.6032 -2402.9274 921491.4634 -3051.6032 -2402.9274
ENERGY: 421 22491.6106 19639.6134 5690.9238 177.2518 -338550.3531 23210.1381 0.0000 0.0000 44931.8959 -222408.9194 163.4499 -267340.8154 -222052.6021 163.4499 -4041.3728 -2452.8636 921491.4634 -4041.3728 -2452.8636
ENERGY: 422 22275.7612 19449.5348 5688.9977 174.4058 -338225.0309 23208.5472 0.0000 0.0000 45004.7083 -222423.0760 163.7148 -267427.7843 -222052.8452 163.7148 -4363.1153 -2465.6374 921491.4634 -4363.1153 -2465.6374
ENERGY: 423 21418.8982 19324.4271 5689.6736 172.2145 -337416.8949 23180.6036 0.0000 0.0000 45183.9713 -222447.1065 164.3669 -267631.0778 -222051.5234 164.3669 -3955.8307 -2434.9307 921491.4634 -3955.8307 -2434.9307
ENERGY: 424 20531.3308 19270.7814 5692.6543 170.6563 -336406.2754 23140.4641 0.0000 0.0000 45151.0455 -222449.3430 164.2471 -267600.3885 -222060.4127 164.2471 -3030.1608 -2370.2034 921491.4634 -3030.1608 -2370.2034
ENERGY: 425 19942.3360 19314.5607 5697.3263 169.6876 -335607.5196 23103.7915 0.0000 0.0000 44956.0479 -222423.7697 163.5377 -267379.8175 -222050.7963 163.5377 -1980.9653 -2297.0091 921491.4634 -1980.9653 -2297.0091
ENERGY: 426 19603.3345 19432.3068 5702.4947 169.0990 -335270.6868 23080.2886 0.0000 0.0000 44862.7385 -222420.4246 163.1983 -267283.1630 -222049.1089 163.1983 -1125.8051 -2237.7216 921491.4634 -1125.8051 -2237.7216
ENERGY: 427 19598.5313 19595.2898 5707.1505 168.7509 -335498.4312 23074.5000 0.0000 0.0000 44915.2777 -222438.9310 163.3894 -267354.2087 -222048.7337 163.3894 -741.9011 -2207.6357 921491.4634 -741.9011 -2207.6357
ENERGY: 428 20140.4227 19760.4170 5710.4629 168.5259 -336199.9847 23087.7670 0.0000 0.0000 44884.2596 -222448.1297 163.2766 -267332.3893 -222058.0549 163.2766 -935.5734 -2206.9586 921491.4634 -935.5734 -2206.9586
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 430 22013.9874 20024.3739 5712.1700 168.1897 -338096.9201 23149.4486 0.0000 0.0000 44626.3099 -222402.4406 162.3383 -267028.7504 -222047.3915 162.3383 -2472.2460 -2268.0467 921491.4634 -2472.2460 -2268.0467
ENERGY: 431 22204.1021 20111.4154 5711.2600 168.0704 -338644.7641 23172.3798 0.0000 0.0000 44858.4631 -222419.0732 163.1828 -267277.5363 -222048.7169 163.1828 -3116.2808 -2293.5593 921491.4634 -3116.2808 -2293.5593
ENERGY: 432 21768.3701 20188.6726 5710.3547 168.1086 -338651.2096 23176.0839 0.0000 0.0000 45177.9913 -222461.6285 164.3451 -267639.6198 -222065.9058 164.3451 -3350.2744 -2296.1500 921491.4634 -3350.2744 -2296.1500
ENERGY: 433 21200.9069 20275.9665 5710.3764 168.4633 -338164.0632 23162.2904 0.0000 0.0000 45192.9286 -222453.1311 164.3995 -267646.0597 -222052.5982 164.3995 -3187.3734 -2272.1278 921491.4634 -3187.3734 -2272.1278
ENERGY: 434 20730.3412 20338.1500 5711.6061 169.3247 -337394.2699 23140.7729 0.0000 0.0000 44883.0998 -222420.9751 163.2724 -267304.0750 -222051.1462 163.2724 -2694.3109 -2227.7887 921491.4634 -2694.3109 -2227.7887
ENERGY: 435 20235.2201 20362.4015 5714.0003 170.8455 -336680.6550 23123.4092 0.0000 0.0000 44675.9840 -222398.7944 162.5190 -267074.7784 -222049.5889 162.5190 -2061.3583 -2179.8953 921491.4634 -2061.3583 -2179.8953
ENERGY: 436 19670.9241 20349.9981 5717.2346 173.0864 -336303.8809 23119.9073 0.0000 0.0000 44847.0986 -222425.6318 163.1414 -267272.7305 -222059.6960 163.1414 -1520.6600 -2145.1619 921491.4634 -1520.6600 -2145.1619
ENERGY: 437 19434.5514 20329.5092 5720.9894 175.9827 -336411.9782 23136.3864 0.0000 0.0000 45159.2690 -222455.2902 164.2770 -267614.5593 -222050.7504 164.2770 -1319.1171 -2134.4850 921491.4634 -1319.1171 -2134.4850
ENERGY: 438 19935.1532 20278.6095 5724.6884 179.3849 -336899.4575 23173.5516 0.0000 0.0000 45148.1324 -222459.9375 164.2365 -267608.0699 -222051.5669 164.2365 -1493.0944 -2145.0883 921491.4634 -1493.0944 -2145.0883
ENERGY: 439 21052.7410 20184.4296 5727.7929 183.0561 -337561.7718 23224.7479 0.0000 0.0000 44760.8208 -222428.1834 162.8276 -267189.0042 -222052.7967 162.8276 -1936.1992 -2169.8748 921491.4634 -1936.1992 -2169.8748
TIMING: 440 CPU: 206.958, 0.45679/step Wall: 206.958, 0.45679/step, 0.00761317 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 440 22071.5686 20036.2372 5729.7527 186.7202 -338123.1805 23276.2483 0.0000 0.0000 44417.5456 -222405.1080 161.5788 -266822.6535 -222059.4774 161.5788 -2408.4615 -2197.9673 921491.4634 -2408.4615 -2197.9673
ENERGY: 441 22355.5486 19860.0409 5730.3488 190.1146 -338361.1713 23313.2043 0.0000 0.0000 44502.6962 -222409.2180 161.8886 -266911.9142 -222050.0861 161.8886 -2716.1029 -2221.5315 921491.4634 -2716.1029 -2221.5315
ENERGY: 442 21853.6115 19664.5349 5729.4855 192.9412 -338090.1529 23327.1566 0.0000 0.0000 44880.6319 -222441.7915 163.2634 -267322.4233 -222049.7756 163.2634 -2710.5577 -2229.0697 921491.4634 -2710.5577 -2229.0697
ENERGY: 443 21064.3314 19487.0722 5727.6165 194.9329 -337369.3146 23320.0156 0.0000 0.0000 45118.1104 -222457.2355 164.1273 -267575.3459 -222048.5997 164.1273 -2448.1648 -2220.3532 921491.4634 -2448.1648 -2220.3532
ENERGY: 444 20449.3363 19357.2689 5725.4095 195.8735 -336464.1917 23301.5275 0.0000 0.0000 44987.7172 -222447.0588 163.6530 -267434.7760 -222057.9798 163.6530 -2090.2099 -2206.4400 921491.4634 -2090.2099 -2206.4400
ENERGY: 445 20125.5608 19307.2517 5723.6513 195.6942 -335759.3910 23283.8137 0.0000 0.0000 44708.7151 -222414.7042 162.6380 -267123.4192 -222046.5428 162.6380 -1846.9626 -2201.6926 921491.4634 -1846.9626 -2201.6926
ENERGY: 446 19947.6803 19324.9005 5722.5430 194.3235 -335494.5705 23276.0450 0.0000 0.0000 44620.2943 -222408.7839 162.3164 -267029.0782 -222046.1621 162.3164 -1800.7518 -2216.7294 921491.4634 -1800.7518 -2216.7294
ENERGY: 447 19914.2847 19416.0210 5722.2107 191.8641 -335769.4398 23282.7457 0.0000 0.0000 44816.5085 -222425.8050 163.0301 -267242.3136 -222046.8343 163.0301 -1993.3113 -2253.0603 921491.4634 -1993.3113 -2253.0603
ENERGY: 448 20187.5923 19583.6801 5722.5765 188.5554 -336503.1801 23303.8903 0.0000 0.0000 45065.6670 -222451.2186 163.9365 -267516.8856 -222059.3482 163.9365 -2372.1880 -2303.7899 921491.4634 -2372.1880 -2303.7899
ENERGY: 449 20877.4063 19832.6987 5723.5713 184.8596 -337500.9072 23334.5921 0.0000 0.0000 45101.1672 -222446.6120 164.0657 -267547.7792 -222047.7100 164.0657 -2827.1083 -2356.1407 921491.4634 -2827.1083 -2356.1407
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 450 21754.4855 20108.1300 5724.4776 181.0897 -338419.3250 23364.6241 0.0000 0.0000 44854.3093 -222432.2087 163.1676 -267286.5180 -222048.7862 163.1676 -3116.6758 -2394.3897 921491.4634 -3116.6758 -2394.3897
ENERGY: 451 22355.5900 20357.7255 5724.7144 177.6517 -338952.0908 23381.8005 0.0000 0.0000 44542.6986 -222411.9102 162.0341 -266954.6087 -222048.8247 162.0341 -3074.2533 -2405.7798 921491.4634 -3074.2533 -2405.7798
ENERGY: 452 22246.2012 20536.0133 5723.8953 174.8859 -338927.1537 23378.0941 0.0000 0.0000 44452.9196 -222415.1441 161.7075 -266868.0638 -222059.6372 161.7075 -2659.9605 -2384.7568 921491.4634 -2659.9605 -2384.7568
ENERGY: 453 21399.8725 20641.1309 5722.2878 173.1350 -338392.7933 23354.5905 0.0000 0.0000 44683.7033 -222418.0732 162.5470 -267101.7764 -222043.5373 162.5470 -2048.3338 -2342.4668 921491.4634 -2048.3338 -2342.4668
ENERGY: 454 20248.3382 20654.1372 5720.2217 172.3637 -337567.1413 23320.6899 0.0000 0.0000 45008.1463 -222443.2443 163.7273 -267451.3906 -222041.8393 163.7273 -1453.4578 -2293.1450 921491.4634 -1453.4578 -2293.1450
ENERGY: 455 19486.7907 20584.7118 5718.4844 172.5169 -336790.6451 23290.4021 0.0000 0.0000 45086.5787 -222451.1605 164.0126 -267537.7392 -222040.8571 164.0126 -1151.8824 -2255.8572 921491.4634 -1151.8824 -2255.8572
ENERGY: 456 19493.3720 20440.6798 5717.7556 173.4248 -336350.1074 23274.9629 0.0000 0.0000 44811.4726 -222438.4397 163.0118 -267249.9123 -222055.3487 163.0118 -1305.5005 -2245.5823 921491.4634 -1305.5005 -2245.5823
ENERGY: 457 20047.4929 20251.9433 5718.5580 174.9241 -336395.8164 23277.8272 0.0000 0.0000 44521.8704 -222403.2004 161.9583 -266925.0708 -222049.4134 161.9583 -1906.4167 -2263.5014 921491.4634 -1906.4167 -2263.5014
ENERGY: 458 20585.8438 20019.2722 5720.7061 176.6081 -336835.0958 23294.7170 0.0000 0.0000 44632.7886 -222405.1600 162.3618 -267037.9487 -222051.2824 162.3618 -2684.6990 -2301.0428 921491.4634 -2684.6990 -2301.0428
ENERGY: 459 20903.4950 19784.9689 5724.0021 178.1985 -337468.1643 23318.6980 0.0000 0.0000 45113.9364 -222444.8654 164.1121 -267558.8018 -222053.1413 164.1121 -3350.5835 -2341.5798 921491.4634 -3350.5835 -2341.5798
TIMING: 460 CPU: 216.103, 0.457282/step Wall: 216.103, 0.457282/step, 0.00508091 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6141 19597.9063 5728.0971 179.4910 -338014.3765 23341.7998 0.0000 0.0000 45423.8564 -222480.6117 165.2395 -267904.4681 -222064.6836 165.2395 -3669.8204 -2365.2413 921491.4634 -3669.8204 -2365.2413
ENERGY: 461 21862.8762 19507.1074 5732.5752 180.4333 -338251.6212 23355.3932 0.0000 0.0000 45154.6139 -222458.6220 164.2601 -267613.2359 -222058.0507 164.2601 -3556.1667 -2361.1801 921491.4634 -3556.1667 -2361.1801
ENERGY: 462 22264.2254 19487.8108 5736.4822 180.9531 -337988.7165 23351.1083 0.0000 0.0000 44559.9292 -222408.2075 162.0968 -266968.1367 -222056.7215 162.0968 -2954.8200 -2323.4252 921491.4634 -2954.8200 -2323.4252
ENERGY: 463 21821.1791 19513.9014 5738.9361 181.1160 -337284.1022 23326.9474 0.0000 0.0000 44313.4570 -222388.5653 161.2002 -266702.0223 -222054.6243 161.2002 -2012.4424 -2264.0780 921491.4634 -2012.4424 -2264.0780
ENERGY: 464 20535.2460 19559.9271 5739.2518 181.0096 -336389.3835 23291.1938 0.0000 0.0000 44654.0266 -222428.7286 162.4391 -267082.7552 -222058.5731 162.4391 -1050.9228 -2205.5271 921491.4634 -1050.9228 -2205.5271
ENERGY: 465 19322.7826 19631.8854 5737.2898 180.7155 -335701.1530 23259.7387 0.0000 0.0000 45094.5689 -222474.1721 164.0416 -267568.7410 -222052.9390 164.0416 -512.3349 -2174.4011 921491.4634 -512.3349 -2174.4011
ENERGY: 466 19088.4509 19708.3582 5733.2107 180.2808 -335443.7723 23245.0599 0.0000 0.0000 45020.7911 -222467.6208 163.7733 -267488.4119 -222052.9787 163.7733 -630.3318 -2182.6713 921491.4634 -630.3318 -2182.6713
ENERGY: 467 19841.8070 19783.1743 5727.6703 179.7757 -335721.0950 23249.4525 0.0000 0.0000 44523.6667 -222415.5484 161.9649 -266939.2152 -222054.3497 161.9649 -1393.6035 -2232.5927 921491.4634 -1393.6035 -2232.5927
ENERGY: 468 20761.8485 19845.4943 5721.5089 179.2779 -336451.5665 23265.8121 0.0000 0.0000 44291.6586 -222385.9663 161.1209 -266677.6249 -222056.3591 161.1209 -2508.6720 -2314.1343 921491.4634 -2508.6720 -2314.1343
ENERGY: 469 21236.3019 19910.2022 5715.6824 178.8504 -337458.3202 23284.3957 0.0000 0.0000 44720.3204 -222412.5672 162.6802 -267132.8877 -222046.0750 162.6802 -3596.7411 -2405.7975 921491.4634 -3596.7411 -2405.7975
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1731 19972.8934 5710.9491 178.5947 -338383.2508 23297.0667 0.0000 0.0000 45346.4580 -222466.1156 164.9580 -267812.5736 -222047.6088 164.9580 -4259.6999 -2477.6834 921491.4634 -4259.6999 -2477.6834
ENERGY: 471 21732.8676 20054.6835 5707.9626 178.5890 -338913.2452 23297.5080 0.0000 0.0000 45471.3375 -222470.2971 165.4122 -267941.6345 -222047.5359 165.4122 -4290.5685 -2504.3178 921491.4634 -4290.5685 -2504.3178
ENERGY: 472 22081.2359 20161.5551 5707.0091 178.9047 -338870.6767 23279.4486 0.0000 0.0000 45028.5305 -222433.9929 163.8014 -267462.5234 -222059.5058 163.8014 -3659.7362 -2479.9187 921491.4634 -3659.7362 -2479.9187
ENERGY: 473 21866.1362 20289.3425 5707.9843 179.6165 -338307.7192 23240.7359 0.0000 0.0000 44634.5180 -222389.3859 162.3681 -267023.9039 -222043.8539 162.3681 -2556.3617 -2408.1660 921491.4634 -2556.3617 -2408.1660
ENERGY: 474 20842.9704 20372.0985 5710.2160 180.7466 -337438.4555 23189.2344 0.0000 0.0000 44733.2314 -222409.9581 162.7272 -267143.1895 -222041.2619 162.7272 -1295.5526 -2316.2731 921491.4634 -1295.5526 -2316.2731
ENERGY: 475 19674.2079 20371.7674 5712.9876 182.2512 -336604.2318 23142.3814 0.0000 0.0000 45070.2147 -222450.4216 163.9531 -267520.6363 -222039.4530 163.9531 -344.6451 -2232.2128 921491.4634 -344.6451 -2232.2128
ENERGY: 476 19235.7861 20282.0275 5715.7683 184.0125 -336100.0909 23115.8463 0.0000 0.0000 45106.0642 -222460.5860 164.0835 -267566.6502 -222053.6137 164.0835 -92.4052 -2183.0654 921491.4634 -92.4052 -2183.0654
ENERGY: 477 19704.7251 20145.9814 5718.4976 185.9230 -336101.8796 23114.2937 0.0000 0.0000 44812.3215 -222420.1374 163.0149 -267232.4588 -222044.8410 163.0149 -667.4949 -2171.8229 921491.4634 -667.4949 -2171.8229
ENERGY: 478 20493.4779 19974.7639 5721.0254 187.7262 -336537.4043 23131.2458 0.0000 0.0000 44627.0337 -222402.1313 162.3409 -267029.1651 -222047.4106 162.3409 -1807.1607 -2198.7956 921491.4634 -1807.1607 -2198.7956
ENERGY: 479 21125.3059 19793.3957 5723.3295 189.2099 -337215.5844 23156.6770 0.0000 0.0000 44802.1582 -222425.5082 162.9779 -267227.6664 -222050.5459 162.9779 -3089.8517 -2246.7917 921491.4634 -3089.8517 -2246.7917
TIMING: 480 CPU: 225.246, 0.457142/step Wall: 225.246, 0.457142/step, 0.00253968 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0326 19623.1965 5725.3111 190.1901 -337854.6789 23181.5117 0.0000 0.0000 45051.6820 -222458.7550 163.8856 -267510.4370 -222064.6209 163.8856 -4077.7326 -2291.4891 921491.4634 -4077.7326 -2291.4891
ENERGY: 481 22092.4851 19510.0433 5727.0952 190.6351 -338199.2482 23196.7958 0.0000 0.0000 45041.3374 -222440.8563 163.8480 -267482.1936 -222052.5265 163.8480 -4466.2391 -2305.6732 921491.4634 -4466.2391 -2305.6732
ENERGY: 482 22186.3465 19466.6794 5728.4964 190.3598 -338044.5417 23192.7474 0.0000 0.0000 44865.8523 -222414.0600 163.2096 -267279.9123 -222051.4112 163.2096 -4059.3094 -2278.0614 921491.4634 -4059.3094 -2278.0614
ENERGY: 483 21553.1412 19511.5744 5729.5660 189.3227 -337426.2183 23165.8740 0.0000 0.0000 44861.8971 -222414.8429 163.1953 -267276.7400 -222048.7671 163.1953 -2964.1718 -2216.4114 921491.4634 -2964.1718 -2216.4114
ENERGY: 484 20460.8924 19631.1938 5730.2465 187.5455 -336590.8884 23126.1351 0.0000 0.0000 45003.6033 -222451.2718 163.7107 -267454.8751 -222059.8743 163.7107 -1565.2422 -2143.1849 921491.4634 -1565.2422 -2143.1849
ENERGY: 485 19688.7718 19800.2990 5730.5256 185.2458 -335902.5866 23092.8470 0.0000 0.0000 44955.5727 -222449.3247 163.5360 -267404.8973 -222045.9607 163.5360 -422.1568 -2086.8735 921491.4634 -422.1568 -2086.8735
ENERGY: 486 19602.5426 19954.8175 5729.7198 182.4662 -335612.3569 23080.3807 0.0000 0.0000 44645.9118 -222416.5183 162.4096 -267062.4300 -222044.6761 162.4096 87.3180 -2070.0981 921491.4634 87.3180 -2070.0981
ENERGY: 487 19881.0927 20072.0212 5727.4348 179.4360 -335846.4483 23091.0544 0.0000 0.0000 44503.3493 -222392.0600 161.8910 -266895.4093 -222045.2408 161.8910 -192.2348 -2106.8840 921491.4634 -192.2348 -2106.8840
ENERGY: 488 20125.2102 20156.1360 5723.5441 176.4338 -336552.5454 23118.8617 0.0000 0.0000 44827.0555 -222425.3041 163.0685 -267252.3596 -222057.1939 163.0685 -1145.7537 -2194.6679 921491.4634 -1145.7537 -2194.6679
ENERGY: 489 20526.8873 20236.4608 5718.5749 173.8639 -337540.4656 23156.7311 0.0000 0.0000 45266.1004 -222461.8473 164.6656 -267727.9477 -222045.6086 164.6656 -2511.2406 -2316.7066 921491.4634 -2511.2406 -2316.7066
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7488 20292.9021 5712.8912 171.8438 -338458.1362 23196.4879 0.0000 0.0000 45213.5630 -222459.6994 164.4745 -267673.2624 -222048.2208 164.4745 -3823.4038 -2437.4154 921491.4634 -3823.4038 -2437.4154
ENERGY: 491 22430.4637 20312.1360 5707.3795 170.5404 -338984.5794 23226.0939 0.0000 0.0000 44733.0090 -222404.9569 162.7264 -267137.9659 -222049.4638 162.7264 -4629.6932 -2524.6214 921491.4634 -4629.6932 -2524.6214
ENERGY: 492 22612.9546 20289.6811 5702.9945 170.0208 -338937.5817 23232.7207 0.0000 0.0000 44542.1950 -222387.0151 162.0323 -266929.2102 -222060.3861 162.0323 -4606.8521 -2557.4729 921491.4634 -4606.8521 -2557.4729
ENERGY: 493 21558.2188 20260.7375 5700.7779 170.3200 -338358.0636 23214.0539 0.0000 0.0000 45033.8228 -222420.1326 163.8207 -267453.9555 -222046.5901 163.8207 -3796.3816 -2540.0995 921491.4634 -3796.3816 -2540.0995
ENERGY: 494 20068.3366 20225.0262 5700.9806 171.2193 -337454.3839 23183.0797 0.0000 0.0000 45622.2475 -222483.4940 165.9612 -268105.7415 -222044.0868 165.9612 -2500.8990 -2482.1068 921491.4634 -2500.8990 -2482.1068
ENERGY: 495 19383.2462 20186.8302 5703.5926 172.5416 -336566.9892 23159.4627 0.0000 0.0000 45484.1232 -222477.1926 165.4587 -267961.3158 -222041.5564 165.4587 -1249.6837 -2407.3056 921491.4634 -1249.6837 -2407.3056
ENERGY: 496 19722.4834 20130.6474 5708.0351 174.0933 -335998.7163 23154.2638 0.0000 0.0000 44699.5272 -222409.6662 162.6046 -267109.1934 -222049.0672 162.6046 -478.8999 -2343.4751 921491.4634 -478.8999 -2343.4751
ENERGY: 497 20212.6670 20059.9178 5713.4613 175.7242 -335952.5050 23166.3548 0.0000 0.0000 44261.0288 -222363.3512 161.0095 -266624.3800 -222042.7502 161.0095 -421.0234 -2316.7928 921491.4634 -421.0234 -2316.7928
ENERGY: 498 20182.0167 19957.1217 5718.5597 177.2604 -336366.4941 23189.3588 0.0000 0.0000 44728.2534 -222413.9235 162.7091 -267142.1768 -222044.5221 162.7091 -993.4682 -2331.6472 921491.4634 -993.4682 -2331.6472
ENERGY: 499 20158.0679 19847.7309 5722.4090 178.6361 -337058.4831 23219.2407 0.0000 0.0000 45439.2644 -222493.1341 165.2956 -267932.3985 -222047.2064 165.2956 -2020.8689 -2376.3390 921491.4634 -2020.8689 -2376.3390
Info: Benchmark time: 4 CPUs 0.456378 s/step 5.28215 days/ns 3224.29 MB memory
TIMING: 500 CPU: 234.317, 0.453524/step Wall: 234.317, 0.453524/step, 0 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8935 19756.6584 5724.4523 179.8271 -337741.4197 23251.1012 0.0000 0.0000 45359.0780 -222495.4092 165.0039 -267854.4872 -222061.0910 165.0039 -3197.5167 -2425.4141 921491.4634 -3197.5167 -2425.4141
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.781 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.781 MB of memory in use
====================================================
WallClock: 241.439987 CPUTime: 241.439987 Memory: 3229.781250 MB
[Partition 0][Node 0] End of program
Application 1110708 resources: utime ~949s, stime ~18s, Rss ~127184, inblocks ~66552, outblocks ~71876
Displaying test.log:
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/retest : batch submitted (2)
Charm++> Running on Gemini (GNI) with 4 processes
Charm++> static SMSG
Charm++> SMSG memory: 19.8KB
Charm++> memory pool init block size: 8MB, total memory pool limit 0MB (0 means no limit)
Charm++> memory pool registered memory limit: 200000MB, send limit: 100000MB
Charm++> Cray TLB page size: 2048K
Charm++> Running in non-SMP mode: numPes 4
Charm++> Using recursive bisection (scheme 3) for topology aware partitions
Converse/Charm++ Commit ID: v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (32-way SMP).
Info: NAMD 2.10 for CRAY-XT-ugni
Info:
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info:
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info:
Info: Based on Charm++/Converse 60601 for gni-crayxc
Info: Built Thu Dec 16 22:45:06 CST 2021 by bwjenkins on jyc1
Info: Running on 4 processors, 4 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.00674814 s
Info: 3103.79 MB of memory in use based on /proc/self/stat
Info: Configuration file is apoa1.namd
Info: Working in the current directory /mnt/abc/scratch/system/bwjenkins/sw_workdir/retest/2021-12-16T22:45:46.990040/namd_2.10_cle5.2_gnu5.1.0
TCL: Suspending until startup complete.
Info: SIMULATION PARAMETERS:
Info: TIMESTEP 1
Info: NUMBER OF STEPS 500
Info: STEPS PER CYCLE 20
Info: PERIODIC CELL BASIS 1 108.861 0 0
Info: PERIODIC CELL BASIS 2 0 108.861 0
Info: PERIODIC CELL BASIS 3 0 0 77.758
Info: PERIODIC CELL CENTER 0 0 0
Info: LOAD BALANCER Centralized
Info: LOAD BALANCING STRATEGY New Load Balancers -- DEFAULT
Info: LDB PERIOD 4000 steps
Info: FIRST LDB TIMESTEP 100
Info: LAST LDB TIMESTEP -1
Info: LDB BACKGROUND SCALING 1
Info: HOM BACKGROUND SCALING 1
Info: PME BACKGROUND SCALING 1
Info: MIN ATOMS PER PATCH 40
Info: INITIAL TEMPERATURE 300
Info: CENTER OF MASS MOVING INITIALLY? NO
Info: DIELECTRIC 1
Info: EXCLUDE SCALED ONE-FOUR
Info: 1-4 ELECTROSTATICS SCALED BY 1
Info: MODIFIED 1-4 VDW PARAMETERS WILL BE USED
Info: NO DCD TRAJECTORY OUTPUT
Info: NO EXTENDED SYSTEM TRAJECTORY OUTPUT
Info: NO VELOCITY DCD OUTPUT
Info: NO FORCE DCD OUTPUT
Info: OUTPUT FILENAME /usr/tmp/apoa1-out
Info: BINARY OUTPUT FILES WILL BE USED
Info: NO RESTART FILE
Info: SWITCHING ACTIVE
Info: SWITCHING ON 10
Info: SWITCHING OFF 12
Info: PAIRLIST DISTANCE 13.5
Info: PAIRLIST SHRINK RATE 0.01
Info: PAIRLIST GROW RATE 0.01
Info: PAIRLIST TRIGGER 0.3
Info: PAIRLISTS PER CYCLE 2
Info: PAIRLISTS ENABLED
Info: MARGIN 0
Info: HYDROGEN GROUP CUTOFF 2.5
Info: PATCH DIMENSION 16
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: TIMING OUTPUT STEPS 20
Info: PARTICLE MESH EWALD (PME) ACTIVE
Info: PME TOLERANCE 1e-06
Info: PME EWALD COEFFICIENT 0.257952
Info: PME INTERPOLATION ORDER 4
Info: PME GRID DIMENSIONS 108 108 80
Info: PME MAXIMUM GRID SPACING 1.5
Info: Attempting to read FFTW data from system
Info: Attempting to read FFTW data from FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: Optimizing 6 FFT steps. 1... 2... 3... 4... 5... 6... Done.
Info: Writing FFTW data to FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: FULL ELECTROSTATIC EVALUATION FREQUENCY 4
Info: USING VERLET I (r-RESPA) MTS SCHEME.
Info: C1 SPLITTING OF LONG RANGE ELECTROSTATICS
Info: PLACING ATOMS IN PATCHES BY HYDROGEN GROUPS
Info: RANDOM NUMBER SEED 74269
Info: USE HYDROGEN BONDS? NO
Info: COORDINATE PDB apoa1.pdb
Info: STRUCTURE FILE apoa1.psf
Info: PARAMETER file: XPLOR format! (default)
Info: PARAMETERS par_all22_prot_lipid.xplor
Info: PARAMETERS par_all22_popc.xplor
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.84498
Info: TIME FOR READING PDB FILE: 0.500216
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.43598 s, 3129.55 MB of memory in use
Info: Startup phase 0 took 0.000301877 s, 3129.55 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.19936 s, 3151.57 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101342 s, 3151.57 MB of memory in use
Info: Startup phase 3 took 0.000128346 s, 3151.57 MB of memory in use
Info: Startup phase 4 took 0.000404345 s, 3151.57 MB of memory in use
Info: Startup phase 5 took 0.000135713 s, 3151.57 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0449541 s, 3170.4 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.416517 s, 3170.4 MB of memory in use
Info: Startup phase 8 took 0.00770786 s, 3178.4 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000499126 s, 3178.4 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00572599 s, 3178.4 MB of memory in use
Info: Startup phase 11 took 0.000227259 s, 3178.4 MB of memory in use
Info: Startup phase 12 took 0.000209876 s, 3178.4 MB of memory in use
Info: Finished startup at 7.11316 s, 3178.4 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8940 24849.5776 0.0000 0.0000 58070.8721 -222575.0715 211.2459 -280645.9435 -223447.0521 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2977 25088.6262 0.0000 0.0000 59867.7844 -223079.1305 217.7825 -282946.9149 -223360.7367 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2220 25459.6294 0.0000 0.0000 52507.9934 -222544.6645 191.0096 -275052.6578 -223356.7149 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0127 25887.6534 0.0000 0.0000 42953.1287 -221679.2679 156.2517 -264632.3966 -223352.8551 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3010 26266.0174 0.0000 0.0000 42465.0707 -221790.4528 154.4763 -264255.5236 -223296.4330 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9402 26591.7245 0.0000 0.0000 50541.8171 -222627.2004 183.8572 -273169.0175 -223230.8086 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2671 26963.6414 0.0000 0.0000 55373.6415 -223162.5380 201.4341 -278536.1795 -223232.0103 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0265 27435.0793 0.0000 0.0000 49899.6949 -222651.4169 181.5214 -272551.1118 -223231.3828 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
ENERGY: 12 26285.2529 18611.6925 5237.4073 254.5717 -340969.2133 27945.8074 0.0000 0.0000 40727.6954 -221906.7861 148.1562 -262634.4816 -223172.5614 148.1562 -1887.2027 -1155.3187 921491.4634 -1887.2027 -1155.3187
ENERGY: 13 25810.1550 20340.2227 5243.3633 239.3557 -340247.5483 28408.4744 0.0000 0.0000 38364.5171 -221841.4601 139.5596 -260205.9773 -223110.9488 139.5596 -1878.7366 -948.4511 921491.4634 -1878.7366 -948.4511
ENERGY: 14 18229.5292 21618.1813 5255.0116 219.9345 -339811.4722 28840.3575 0.0000 0.0000 43120.5707 -222527.8873 156.8608 -265648.4581 -223112.7585 156.8608 -1024.8387 -790.0063 921491.4634 -1024.8387 -790.0063
ENERGY: 15 14141.3260 21914.0174 5270.4562 198.4604 -339999.9011 29330.1986 0.0000 0.0000 46274.3874 -222871.0551 168.3335 -269145.4425 -223114.1848 168.3335 -276.1129 -654.0185 921491.4634 -276.1129 -654.0185
ENERGY: 16 18533.5985 21379.4766 5286.3853 177.1317 -341073.7438 29909.1296 0.0000 0.0000 43310.7888 -222477.2332 157.5527 -265788.0221 -223107.6653 157.5527 -215.9503 -534.2016 921491.4634 -215.9503 -534.2016
ENERGY: 17 24285.5817 20685.3759 5300.2791 158.0483 -342718.3075 30497.9364 0.0000 0.0000 39857.6662 -221933.4200 144.9912 -261791.0862 -223067.7882 144.9912 -418.5180 -445.9262 921491.4634 -418.5180 -445.9262
ENERGY: 18 23242.4117 20468.5288 5310.2673 142.6286 -344641.7090 31004.0211 0.0000 0.0000 42309.0086 -222164.8430 153.9085 -264473.8516 -223068.8515 153.9085 -264.8021 -408.6302 921491.4634 -264.8021 -408.6302
ENERGY: 19 18143.9400 20989.5296 5316.6991 131.8194 -346529.5495 31434.4322 0.0000 0.0000 47714.3022 -222798.8270 173.5715 -270513.1292 -223071.3656 173.5715 41.9014 -392.2664 921491.4634 41.9014 -392.2664
LDB: ============= START OF LOAD BALANCING ============== 16.6622
LDB: ============== END OF LOAD BALANCING =============== 16.6623
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 16.6627
TIMING: 20 CPU: 10.4778, 0.475521/step Wall: 10.4778, 0.475521/step, 0.0634028 hours remaining, 3219.722656 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 20 17965.5059 22054.9968 5321.8173 125.9640 -348206.1516 31862.6111 0.0000 0.0000 47960.4281 -222914.8283 174.4669 -270875.2564 -223082.7607 174.4669 -133.8116 -346.5459 921491.4634 -133.8116 -346.5459
ENERGY: 21 24039.1423 23261.1505 5329.8150 124.9653 -349366.5698 32291.6370 0.0000 0.0000 42039.3836 -222280.4760 152.9277 -264319.8596 -223063.1338 152.9277 -740.3955 -247.6204 921491.4634 -740.3955 -247.6204
ENERGY: 22 27739.0451 24128.7772 5344.8281 128.0343 -349763.5536 32625.8383 0.0000 0.0000 37948.0934 -221848.9373 138.0447 -259797.0307 -223062.3008 138.0447 -901.2301 -130.9897 921491.4634 -901.2301 -130.9897
ENERGY: 23 23247.6166 24272.4991 5370.4269 134.1642 -349332.6447 32798.0362 0.0000 0.0000 41280.9383 -222228.9634 150.1687 -263509.9017 -223063.4053 150.1687 -121.6534 -27.8474 921491.4634 -121.6534 -27.8474
ENERGY: 24 16511.8017 23459.5972 5407.7262 142.1780 -348420.3087 32880.6042 0.0000 0.0000 47144.4570 -222873.9444 171.4986 -270018.4014 -223056.8663 171.4986 942.5310 70.4533 921491.4634 942.5310 70.4533
ENERGY: 25 16917.9802 21778.2434 5454.8988 151.0023 -347594.2603 32989.6205 0.0000 0.0000 47486.3028 -222816.2123 172.7421 -270302.5151 -223053.2179 172.7421 1272.0519 195.5279 921491.4634 1272.0519 195.5279
ENERGY: 26 23581.2555 19675.3687 5506.8492 159.5877 -347249.8436 33136.3761 0.0000 0.0000 43029.5317 -222160.8746 156.5296 -265190.4063 -223051.5349 156.5296 769.4263 319.1965 921491.4634 769.4263 319.1965
ENERGY: 27 26456.6584 17946.7066 5557.4986 167.2901 -347403.8185 33225.3823 0.0000 0.0000 42147.2259 -221903.0567 153.3200 -264050.2826 -223051.1656 153.3200 220.6605 393.1594 921491.4634 220.6605 393.1594
ENERGY: 28 21041.4522 17329.1340 5601.2360 173.7564 -347813.2805 33197.2135 0.0000 0.0000 47975.5933 -222494.8953 174.5220 -270470.4886 -223001.5672 174.5220 79.1066 399.7476 921491.4634 79.1066 399.7476
ENERGY: 29 15396.3270 18061.9472 5634.3634 178.8635 -348340.9353 33114.0513 0.0000 0.0000 52817.3032 -223138.0796 192.1348 -275955.3828 -223013.8477 192.1348 -116.7881 392.2540 921491.4634 -116.7881 392.2540
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 30 18751.3177 19659.9906 5655.0732 182.5488 -348790.2987 33060.9284 0.0000 0.0000 48617.0317 -222863.4082 176.8554 -271480.4399 -223014.4701 176.8554 -820.6934 415.3193 921491.4634 -820.6934 415.3193
ENERGY: 31 27694.5951 21259.1820 5664.2790 184.9293 -348929.5883 33008.3021 0.0000 0.0000 39136.7131 -221981.5877 142.3686 -261118.3008 -223012.7194 142.3686 -1451.9808 460.8912 921491.4634 -1451.9808 460.8912
ENERGY: 32 30068.2853 22087.7452 5665.1959 186.2529 -348469.1901 32843.5146 0.0000 0.0000 35956.7802 -221661.4159 130.8009 -257618.1961 -222879.6160 130.8009 -898.8256 477.0667 921491.4634 -898.8256 477.0667
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TIMING: 40 CPU: 19.9852, 0.475374/step Wall: 19.9852, 0.475374/step, 0.0607422 hours remaining, 3220.609375 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 60 CPU: 29.4835, 0.474913/step Wall: 29.4835, 0.474913/step, 0.058045 hours remaining, 3220.890625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 80 CPU: 38.9701, 0.474329/step Wall: 38.9701, 0.474329/step, 0.0553384 hours remaining, 3221.046875 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 97 19809.1309 22949.2011 5737.7476 216.2279 -334886.9639 22225.8322 0.0000 0.0000 41505.2398 -222443.5845 150.9847 -263948.8243 -222346.5815 150.9847 -2891.9374 -2214.1665 921491.4634 -2891.9374 -2214.1665
ENERGY: 98 19979.7556 22958.8353 5756.3117 214.8681 -335616.8431 22188.2114 0.0000 0.0000 41993.4227 -222525.4382 152.7605 -264518.8609 -222347.6398 152.7605 -3206.5490 -2272.3421 921491.4634 -3206.5490 -2272.3421
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LDB: ============= START OF LOAD BALANCING ============== 54.6409
LDB: Largest compute 200 load 0.434408 is 1.2% of average load 36.841619
LDB: Average compute 0.051607 is 0.1% of average load 36.841619
LDB: Partitioning computes with target load 3.684162
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.055845
LDB: ============== END OF LOAD BALANCING =============== 54.643
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.6439
Info: Initial time: 4 CPUs 0.474759 s/step 5.4949 days/ns 3221.52 MB memory
TIMING: 100 CPU: 48.4471, 0.473851/step Wall: 48.4471, 0.473851/step, 0.0526502 hours remaining, 3221.523438 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 64.1038
LDB: ============== END OF LOAD BALANCING =============== 64.1039
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 64.1043
TIMING: 120 CPU: 57.9072, 0.473004/step Wall: 57.9072, 0.473004/step, 0.0499282 hours remaining, 3221.652344 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 160 CPU: 76.7997, 0.471991/step Wall: 76.7997, 0.471991/step, 0.0445769 hours remaining, 3222.093750 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 178 21917.7900 18733.9559 5737.6245 154.5770 -332975.2976 21015.2133 0.0000 0.0000 43101.1544 -222314.9824 156.7902 -265416.1368 -222126.1321 156.7902 -2936.2256 -2665.7682 921491.4634 -2936.2256 -2665.7682
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TIMING: 180 CPU: 86.2301, 0.471521/step Wall: 86.2301, 0.471521/step, 0.041913 hours remaining, 3222.234375 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 180 19770.2943 19384.7963 5738.8341 156.9935 -334084.3526 21065.2916 0.0000 0.0000 45324.2214 -222643.9214 164.8771 -267968.1428 -222142.6346 164.8771 -2684.8630 -2671.3561 921491.4634 -2684.8630 -2671.3561
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ENERGY: 187 22073.2968 19471.4303 5678.7398 184.6336 -333156.1128 21076.9265 0.0000 0.0000 42449.0055 -222222.0802 154.4178 -264671.0857 -222130.9081 154.4178 -3641.8536 -2802.0867 921491.4634 -3641.8536 -2802.0867
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 197 21700.3670 19122.7580 5714.1451 184.7200 -332668.2731 21129.4587 0.0000 0.0000 42574.3654 -222242.4588 154.8738 -264816.8242 -222086.7181 154.8738 -3040.7437 -2596.5494 921491.4634 -3040.7437 -2596.5494
ENERGY: 198 21224.0060 18800.3005 5711.3574 186.3640 -333385.4998 21161.1533 0.0000 0.0000 43911.2864 -222391.0322 159.7372 -266302.3185 -222090.4393 159.7372 -4381.6809 -2646.7680 921491.4634 -4381.6809 -2646.7680
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LDB: ============= START OF LOAD BALANCING ============== 101.858
LDB: Largest compute 200 load 0.429719 is 1.2% of average load 36.660865
LDB: Average compute 0.051352 is 0.1% of average load 36.660865
LDB: TIME 101.859 LOAD: AVG 36.6609 MAX 37.7531 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.55 MB
LDB: TIME 101.862 LOAD: AVG 36.6609 MAX 37.6574 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.55 MB
LDB: ============== END OF LOAD BALANCING =============== 101.863
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.867
Info: Initial time: 4 CPUs 0.472085 s/step 5.46395 days/ns 3223.52 MB memory
TIMING: 200 CPU: 95.6655, 0.471768/step Wall: 95.6655, 0.471768/step, 0.039314 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 200 21073.6837 18595.6349 5711.8747 190.0258 -334670.2810 21209.9247 0.0000 0.0000 45319.1601 -222569.9771 164.8586 -267889.1372 -222114.5244 164.8586 -5241.8526 -2703.6813 921491.4634 -5241.8526 -2703.6813
ENERGY: 201 23380.1030 18674.3333 5716.2802 191.4188 -334751.7129 21239.1340 0.0000 0.0000 43222.4695 -222327.9741 157.2315 -265550.4436 -222100.1077 157.2315 -4546.2004 -2661.1900 921491.4634 -4546.2004 -2661.1900
ENERGY: 202 23622.8116 18850.8450 5722.5980 192.1474 -334305.3005 21243.2751 0.0000 0.0000 42432.5587 -222241.0646 154.3580 -264673.6233 -222096.8290 154.3580 -3005.0518 -2588.0013 921491.4634 -3005.0518 -2588.0013
ENERGY: 203 20743.8944 19130.0391 5729.2400 192.0764 -333501.9371 21215.8253 0.0000 0.0000 44059.6986 -222431.1633 160.2771 -266490.8619 -222093.6426 160.2771 -1046.8257 -2512.4435 921491.4634 -1046.8257 -2512.4435
ENERGY: 204 17862.6123 19486.9557 5734.1463 191.2124 -332722.2199 21188.8402 0.0000 0.0000 45629.4719 -222628.9811 165.9875 -268258.4529 -222116.7003 165.9875 452.9933 -2462.2930 921491.4634 452.9933 -2462.2930
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ENERGY: 208 20293.2703 20371.8903 5718.1572 182.8654 -334789.2381 21322.2409 0.0000 0.0000 44428.6271 -222472.1868 161.6191 -266900.8139 -222122.6317 161.6191 -3669.0644 -2719.7953 921491.4634 -3669.0644 -2719.7953
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 210 21385.1734 20194.2569 5705.3139 178.4614 -336615.7771 21385.1095 0.0000 0.0000 45251.4335 -222516.0285 164.6123 -267767.4619 -222108.2019 164.6123 -6091.3664 -2896.2628 921491.4634 -6091.3664 -2896.2628
ENERGY: 211 24099.1928 19985.8632 5704.9373 176.9105 -336667.8930 21415.1477 0.0000 0.0000 43031.7285 -222254.1131 156.5376 -265285.8416 -222106.8544 156.5376 -5900.2978 -2885.1011 921491.4634 -5900.2978 -2885.1011
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ENERGY: 213 20150.2159 19524.5249 5720.1722 175.9508 -334874.6441 21380.5551 0.0000 0.0000 45418.7805 -222504.4447 165.2210 -267923.2252 -222097.3834 165.2210 -2174.3116 -2725.0841 921491.4634 -2174.3116 -2725.0841
ENERGY: 214 17315.5528 19421.7448 5733.3059 176.6827 -333645.3933 21358.4485 0.0000 0.0000 46958.4702 -222681.1885 170.8220 -269639.6586 -222093.7407 170.8220 -143.6684 -2626.0578 921491.4634 -143.6684 -2626.0578
ENERGY: 215 18210.5055 19441.9743 5746.5772 178.1492 -332787.3320 21379.5596 0.0000 0.0000 45302.6745 -222527.8916 164.7987 -267830.5661 -222091.0447 164.7987 784.0015 -2554.0368 921491.4634 784.0015 -2554.0368
ENERGY: 216 20973.4717 19522.5061 5756.9571 180.1770 -332560.1062 21436.4835 0.0000 0.0000 42442.1787 -222248.3320 154.3930 -264690.5107 -222073.6158 154.3930 420.9901 -2541.5428 921491.4634 420.9901 -2541.5428
ENERGY: 217 21778.3867 19581.4819 5762.2416 182.5517 -333010.6759 21497.2705 0.0000 0.0000 41983.6750 -222225.0685 152.7251 -264208.7435 -222064.4467 152.7251 -882.1700 -2598.7243 921491.4634 -882.1700 -2598.7243
ENERGY: 218 20165.9157 19540.0890 5761.2415 184.9927 -333856.1149 21546.6561 0.0000 0.0000 44178.6836 -222478.5363 160.7099 -266657.2199 -222068.8157 160.7099 -2628.0653 -2703.9746 921491.4634 -2628.0653 -2703.9746
ENERGY: 219 19429.8641 19413.3931 5754.3577 187.2447 -334778.0710 21596.8808 0.0000 0.0000 45751.9297 -222644.4010 166.4329 -268396.3307 -222073.1722 166.4329 -4457.7333 -2810.5237 921491.4634 -4457.7333 -2810.5237
TIMING: 220 CPU: 105.113, 0.472354/step Wall: 105.113, 0.472354/step, 0.0367387 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 220 21580.9145 19260.1136 5743.1672 189.1021 -335473.8429 21655.3184 0.0000 0.0000 44539.5738 -222505.6535 162.0227 -267045.2272 -222092.6289 162.0227 -5898.3511 -2876.6576 921491.4634 -5898.3511 -2876.6576
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 230 21999.2457 20926.2538 5717.1889 185.9786 -336838.6565 21834.6451 0.0000 0.0000 43751.0551 -222424.2894 159.1543 -266175.3444 -222088.6909 159.1543 -4902.3781 -2766.0557 921491.4634 -4902.3781 -2766.0557
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TIMING: 240 CPU: 114.549, 0.471829/step Wall: 114.549, 0.471829/step, 0.0340765 hours remaining, 3223.519531 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 260 CPU: 123.978, 0.471441/step Wall: 123.978, 0.471441/step, 0.0314294 hours remaining, 3223.867188 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 263 19781.1228 20140.5621 5703.8103 187.9445 -335614.9712 21924.4739 0.0000 0.0000 45349.7771 -222527.2804 164.9700 -267877.0575 -222051.1547 164.9700 -2647.8115 -2773.3903 921491.4634 -2647.8115 -2773.3903
ENERGY: 264 19385.2260 20436.4304 5710.6950 187.5052 -334855.9511 21907.7771 0.0000 0.0000 44751.4784 -222476.8389 162.7936 -267228.3173 -222069.1984 162.7936 -2191.1926 -2723.5294 921491.4634 -2191.1926 -2723.5294
ENERGY: 265 19946.8414 20681.9925 5713.6242 187.4392 -334395.6631 21906.0162 0.0000 0.0000 43607.6375 -222352.1121 158.6326 -265959.7496 -222054.3372 158.6326 -2038.0573 -2683.6035 921491.4634 -2038.0573 -2683.6035
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ENERGY: 267 19648.0905 20691.2678 5707.0583 187.8501 -334831.4855 21930.8373 0.0000 0.0000 44220.2168 -222446.1646 160.8610 -266666.3814 -222055.6585 160.8610 -2435.4236 -2662.6783 921491.4634 -2435.4236 -2662.6783
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 278 20199.4577 19713.7761 5686.9122 183.6585 -334821.1003 22041.3358 0.0000 0.0000 44532.2540 -222463.7060 161.9961 -266995.9600 -222063.4130 161.9961 -3254.8157 -2593.7696 921491.4634 -3254.8157 -2593.7696
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TIMING: 280 CPU: 133.391, 0.470657/step Wall: 133.391, 0.470657/step, 0.0287624 hours remaining, 3223.867188 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 149.017
LDB: Largest compute 200 load 0.524838 is 1.1% of average load 45.781358
LDB: Average compute 0.064134 is 0.1% of average load 45.781358
LDB: TIME 149.019 LOAD: AVG 45.7814 MAX 47.1509 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.29 MB
LDB: TIME 149.02 LOAD: AVG 45.7814 MAX 47.1509 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3224.29 MB
LDB: TIME 149.025 LOAD: AVG 45.7814 MAX 46.1401 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: ============== END OF LOAD BALANCING =============== 149.026
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 149.027
Info: Initial time: 4 CPUs 0.471156 s/step 5.4532 days/ns 3224.29 MB memory
TIMING: 300 CPU: 142.791, 0.469984/step Wall: 142.791, 0.469985/step, 0.0261103 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 320 CPU: 151.98, 0.459478/step Wall: 151.98, 0.459478/step, 0.0229739 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 323 21976.7005 21085.8078 5695.4506 181.8003 -337194.0743 22550.8101 0.0000 0.0000 43361.4903 -222342.0147 157.7372 -265703.5050 -222061.4466 157.7372 -3808.3605 -2616.6945 921491.4634 -3808.3605 -2616.6945
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 336 19127.9132 19639.0996 5698.6022 180.2744 -334271.7853 22519.6995 0.0000 0.0000 44649.6647 -222456.5317 162.4232 -267106.1964 -222055.6203 162.4232 -1093.5005 -2488.8702 921491.4634 -1093.5005 -2488.8702
ENERGY: 337 20420.1633 19649.7063 5693.3319 179.7347 -334824.3556 22536.4220 0.0000 0.0000 43995.5995 -222349.3978 160.0439 -266344.9973 -222040.1026 160.0439 -1064.7184 -2460.5860 921491.4634 -1064.7184 -2460.5860
ENERGY: 338 21007.5746 19722.4643 5687.5590 179.5437 -335808.8618 22564.1942 0.0000 0.0000 44285.9171 -222361.6090 161.1000 -266647.5261 -222041.5960 161.1000 -1500.9499 -2462.8576 921491.4634 -1500.9499 -2462.8576
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TIMING: 340 CPU: 161.159, 0.458951/step Wall: 161.159, 0.458951/step, 0.0203978 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 345 18694.7356 20199.0881 5702.3270 182.4513 -335224.1272 22568.7533 0.0000 0.0000 45351.4661 -222525.3057 164.9762 -267876.7718 -222058.0556 164.9762 -1576.2390 -2261.7961 921491.4634 -1576.2390 -2261.7961
ENERGY: 346 19350.9888 19892.9542 5701.0894 182.7368 -334783.0720 22565.1334 0.0000 0.0000 44652.5019 -222437.6674 162.4335 -267090.1693 -222056.8257 162.4335 -1239.3023 -2211.7782 921491.4634 -1239.3023 -2211.7782
ENERGY: 347 20669.8295 19583.9410 5696.3950 182.8447 -334881.4385 22581.1979 0.0000 0.0000 43831.1328 -222336.0977 159.4456 -266167.2304 -222056.9475 159.4456 -1358.8147 -2194.9213 921491.4634 -1358.8147 -2194.9213
ENERGY: 348 21062.2472 19315.9903 5689.3479 182.7918 -335425.6668 22604.2197 0.0000 0.0000 44195.9877 -222375.0821 160.7729 -266571.0699 -222064.0949 160.7729 -1766.2768 -2218.9159 921491.4634 -1766.2768 -2218.9159
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 356 19622.4369 20015.8109 5694.4280 181.9402 -334758.7691 22674.4075 0.0000 0.0000 44153.0886 -222416.6569 160.6168 -266569.7455 -222053.0965 160.6168 -1622.0263 -2446.8267 921491.4634 -1622.0263 -2446.8267
ENERGY: 357 20687.2712 20255.1054 5697.1708 182.0215 -335288.0645 22700.2945 0.0000 0.0000 43438.0178 -222328.1834 158.0156 -265766.2012 -222042.2333 158.0156 -2061.3608 -2486.6664 921491.4634 -2061.3608 -2486.6664
ENERGY: 358 20785.4067 20424.8428 5696.9833 182.1295 -336225.9479 22730.2415 0.0000 0.0000 44019.5823 -222386.7619 160.1311 -266406.3442 -222043.9948 160.1311 -2636.8582 -2541.3594 921491.4634 -2636.8582 -2541.3594
ENERGY: 359 20493.6441 20484.4983 5694.4425 182.1894 -337270.5929 22762.0664 0.0000 0.0000 45152.8979 -222500.8543 164.2538 -267653.7522 -222046.1005 164.2538 -3161.2179 -2593.4282 921491.4634 -3161.2179 -2593.4282
TIMING: 360 CPU: 170.335, 0.458772/step Wall: 170.335, 0.458772/step, 0.0178411 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 366 19854.2637 19578.5649 5722.5903 180.3919 -334923.1927 22780.3501 0.0000 0.0000 44422.2469 -222384.7850 161.5959 -266807.0319 -222057.2778 161.5959 -1392.6925 -2417.6863 921491.4634 -1392.6925 -2417.6863
ENERGY: 367 20741.0596 19662.8835 5732.9484 180.1165 -335098.3157 22794.3494 0.0000 0.0000 43662.6182 -222324.3401 158.8326 -265986.9583 -222058.3714 158.8326 -2104.1274 -2437.9269 921491.4634 -2104.1274 -2437.9269
ENERGY: 368 20561.5937 19748.2121 5739.6692 179.8275 -335728.0877 22808.6652 0.0000 0.0000 44272.8405 -222417.2795 161.0524 -266690.1200 -222068.2914 161.0524 -2928.4886 -2487.3069 921491.4634 -2928.4886 -2487.3069
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 370 21302.3706 19815.7285 5738.6028 179.1429 -337296.0560 22846.3050 0.0000 0.0000 44920.4943 -222493.4118 163.4084 -267413.9061 -222062.2628 163.4084 -4081.4436 -2576.8189 921491.4634 -4081.4436 -2576.8189
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TIMING: 380 CPU: 179.503, 0.458418/step Wall: 179.503, 0.458418/step, 0.0152806 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 386 19981.2272 19220.9464 5707.6638 175.9384 -334865.1819 22880.7962 0.0000 0.0000 44519.8583 -222378.7516 161.9510 -266898.6099 -222051.0438 161.9510 122.6672 -2011.2426 921491.4634 122.6672 -2011.2426
ENERGY: 387 20367.2860 19202.4843 5710.9355 174.6759 -335109.8729 22905.2749 0.0000 0.0000 44377.1813 -222372.0350 161.4320 -266749.2163 -222053.0051 161.4320 -738.9583 -2019.1687 921491.4634 -738.9583 -2019.1687
ENERGY: 388 20282.3987 19280.0166 5717.2935 173.7038 -335824.1524 22938.2905 0.0000 0.0000 44972.7760 -222459.6733 163.5986 -267432.4493 -222067.4820 163.5986 -2063.8554 -2076.2821 921491.4634 -2063.8554 -2076.2821
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 398 19692.8116 20133.3591 5716.9814 176.0456 -336812.3384 23014.0591 0.0000 0.0000 45592.7321 -222486.3496 165.8538 -268079.0817 -222045.7222 165.8538 -1710.2235 -2443.6963 921491.4634 -1710.2235 -2443.6963
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LDB: ============= START OF LOAD BALANCING ============== 194.917
LDB: Largest compute 230 load 0.531014 is 1.2% of average load 45.756312
LDB: Average compute 0.064036 is 0.1% of average load 45.756312
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3224.29 MB
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: TIME 194.919 LOAD: AVG 45.7563 MAX 45.8864 PROXIES: TOTAL 115 MAXPE 31 MAXPATCH 2 RefineTorusLB MEM: 3224.29 MB
LDB: ============== END OF LOAD BALANCING =============== 194.92
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.921
Info: Benchmark time: 4 CPUs 0.45884 s/step 5.31065 days/ns 3224.29 MB memory
TIMING: 400 CPU: 188.679, 0.458786/step Wall: 188.679, 0.458786/step, 0.0127441 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 400 21983.9559 19981.4881 5714.2278 174.7229 -338264.6732 23090.3533 0.0000 0.0000 44890.2679 -222429.6571 163.2985 -267319.9251 -222060.6832 163.2985 -4748.6078 -2656.9997 921491.4634 -4748.6078 -2656.9997
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ENERGY: 402 22444.0480 19835.9108 5715.8942 173.8391 -338107.6289 23109.6383 0.0000 0.0000 44436.8094 -222391.4891 161.6489 -266828.2985 -222049.2227 161.6489 -4939.3795 -2681.7024 921491.4634 -4939.3795 -2681.7024
ENERGY: 403 20784.9693 19778.4827 5715.7218 174.2695 -337239.9784 23077.8406 0.0000 0.0000 45225.5959 -222483.0985 164.5183 -267708.6944 -222046.6855 164.5183 -3613.5977 -2605.7428 921491.4634 -3613.5977 -2605.7428
ENERGY: 404 19687.5951 19735.4027 5713.8114 175.5084 -336169.1137 23038.2904 0.0000 0.0000 45313.8389 -222504.6667 164.8393 -267818.5056 -222060.2369 164.8393 -1967.0744 -2494.0437 921491.4634 -1967.0744 -2494.0437
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ENERGY: 408 19735.8469 19387.6644 5692.2152 187.5226 -335902.8217 23017.8176 0.0000 0.0000 45394.4120 -222487.3430 165.1324 -267881.7550 -222063.5309 165.1324 -920.8281 -2294.1555 921491.4634 -920.8281 -2294.1555
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 410 21850.5213 19470.1803 5687.6650 194.4179 -337813.1845 23106.2031 0.0000 0.0000 45077.0712 -222427.1257 163.9780 -267504.1969 -222054.6425 163.9780 -3838.6212 -2402.0239 921491.4634 -3838.6212 -2402.0239
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ENERGY: 413 21130.1415 20138.5248 5699.9334 199.7191 -337872.5318 23125.1117 0.0000 0.0000 45113.2144 -222465.8869 164.1095 -267579.1012 -222055.3452 164.1095 -3850.6269 -2398.9549 921491.4634 -3850.6269 -2398.9549
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ENERGY: 415 19745.2666 20572.1258 5708.7452 198.1487 -336456.1970 23071.1991 0.0000 0.0000 44733.2273 -222427.4844 162.7272 -267160.7116 -222049.0345 162.7272 -1174.6451 -2266.5615 921491.4634 -1174.6451 -2266.5615
ENERGY: 416 19942.3169 20661.9894 5710.0857 195.6953 -336157.5859 23063.1714 0.0000 0.0000 44200.2850 -222384.0420 160.7885 -266584.3271 -222052.9643 160.7885 -282.7612 -2224.6897 921491.4634 -282.7612 -2224.6897
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ENERGY: 418 20154.6647 20457.0907 5705.5848 188.6536 -336970.7865 23098.6724 0.0000 0.0000 44915.1424 -222450.9778 163.3889 -267366.1202 -222046.7092 163.3889 -671.8546 -2269.9921 921491.4634 -671.8546 -2269.9921
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TIMING: 420 CPU: 197.822, 0.45716/step Wall: 197.822, 0.45716/step, 0.0101591 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 422 22275.7612 19449.5348 5688.9977 174.4058 -338225.0309 23208.5472 0.0000 0.0000 45004.7083 -222423.0760 163.7148 -267427.7843 -222052.8452 163.7148 -4363.1153 -2465.6374 921491.4634 -4363.1153 -2465.6374
ENERGY: 423 21418.8982 19324.4271 5689.6736 172.2145 -337416.8949 23180.6036 0.0000 0.0000 45183.9713 -222447.1065 164.3669 -267631.0778 -222051.5234 164.3669 -3955.8307 -2434.9307 921491.4634 -3955.8307 -2434.9307
ENERGY: 424 20531.3308 19270.7814 5692.6543 170.6563 -336406.2754 23140.4641 0.0000 0.0000 45151.0455 -222449.3430 164.2471 -267600.3885 -222060.4127 164.2471 -3030.1608 -2370.2034 921491.4634 -3030.1608 -2370.2034
ENERGY: 425 19942.3360 19314.5607 5697.3263 169.6876 -335607.5196 23103.7915 0.0000 0.0000 44956.0479 -222423.7697 163.5377 -267379.8175 -222050.7963 163.5377 -1980.9653 -2297.0091 921491.4634 -1980.9653 -2297.0091
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ENERGY: 427 19598.5313 19595.2898 5707.1505 168.7509 -335498.4312 23074.5000 0.0000 0.0000 44915.2777 -222438.9310 163.3894 -267354.2087 -222048.7337 163.3894 -741.9011 -2207.6357 921491.4634 -741.9011 -2207.6357
ENERGY: 428 20140.4227 19760.4170 5710.4629 168.5259 -336199.9847 23087.7670 0.0000 0.0000 44884.2596 -222448.1297 163.2766 -267332.3893 -222058.0549 163.2766 -935.5734 -2206.9586 921491.4634 -935.5734 -2206.9586
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 430 22013.9874 20024.3739 5712.1700 168.1897 -338096.9201 23149.4486 0.0000 0.0000 44626.3099 -222402.4406 162.3383 -267028.7504 -222047.3915 162.3383 -2472.2460 -2268.0467 921491.4634 -2472.2460 -2268.0467
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ENERGY: 432 21768.3701 20188.6726 5710.3547 168.1086 -338651.2096 23176.0839 0.0000 0.0000 45177.9913 -222461.6285 164.3451 -267639.6198 -222065.9058 164.3451 -3350.2744 -2296.1500 921491.4634 -3350.2744 -2296.1500
ENERGY: 433 21200.9069 20275.9665 5710.3764 168.4633 -338164.0632 23162.2904 0.0000 0.0000 45192.9286 -222453.1311 164.3995 -267646.0597 -222052.5982 164.3995 -3187.3734 -2272.1278 921491.4634 -3187.3734 -2272.1278
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ENERGY: 435 20235.2201 20362.4015 5714.0003 170.8455 -336680.6550 23123.4092 0.0000 0.0000 44675.9840 -222398.7944 162.5190 -267074.7784 -222049.5889 162.5190 -2061.3583 -2179.8953 921491.4634 -2061.3583 -2179.8953
ENERGY: 436 19670.9241 20349.9981 5717.2346 173.0864 -336303.8809 23119.9073 0.0000 0.0000 44847.0986 -222425.6318 163.1414 -267272.7305 -222059.6960 163.1414 -1520.6600 -2145.1619 921491.4634 -1520.6600 -2145.1619
ENERGY: 437 19434.5514 20329.5092 5720.9894 175.9827 -336411.9782 23136.3864 0.0000 0.0000 45159.2690 -222455.2902 164.2770 -267614.5593 -222050.7504 164.2770 -1319.1171 -2134.4850 921491.4634 -1319.1171 -2134.4850
ENERGY: 438 19935.1532 20278.6095 5724.6884 179.3849 -336899.4575 23173.5516 0.0000 0.0000 45148.1324 -222459.9375 164.2365 -267608.0699 -222051.5669 164.2365 -1493.0944 -2145.0883 921491.4634 -1493.0944 -2145.0883
ENERGY: 439 21052.7410 20184.4296 5727.7929 183.0561 -337561.7718 23224.7479 0.0000 0.0000 44760.8208 -222428.1834 162.8276 -267189.0042 -222052.7967 162.8276 -1936.1992 -2169.8748 921491.4634 -1936.1992 -2169.8748
TIMING: 440 CPU: 206.958, 0.45679/step Wall: 206.958, 0.45679/step, 0.00761317 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 440 22071.5686 20036.2372 5729.7527 186.7202 -338123.1805 23276.2483 0.0000 0.0000 44417.5456 -222405.1080 161.5788 -266822.6535 -222059.4774 161.5788 -2408.4615 -2197.9673 921491.4634 -2408.4615 -2197.9673
ENERGY: 441 22355.5486 19860.0409 5730.3488 190.1146 -338361.1713 23313.2043 0.0000 0.0000 44502.6962 -222409.2180 161.8886 -266911.9142 -222050.0861 161.8886 -2716.1029 -2221.5315 921491.4634 -2716.1029 -2221.5315
ENERGY: 442 21853.6115 19664.5349 5729.4855 192.9412 -338090.1529 23327.1566 0.0000 0.0000 44880.6319 -222441.7915 163.2634 -267322.4233 -222049.7756 163.2634 -2710.5577 -2229.0697 921491.4634 -2710.5577 -2229.0697
ENERGY: 443 21064.3314 19487.0722 5727.6165 194.9329 -337369.3146 23320.0156 0.0000 0.0000 45118.1104 -222457.2355 164.1273 -267575.3459 -222048.5997 164.1273 -2448.1648 -2220.3532 921491.4634 -2448.1648 -2220.3532
ENERGY: 444 20449.3363 19357.2689 5725.4095 195.8735 -336464.1917 23301.5275 0.0000 0.0000 44987.7172 -222447.0588 163.6530 -267434.7760 -222057.9798 163.6530 -2090.2099 -2206.4400 921491.4634 -2090.2099 -2206.4400
ENERGY: 445 20125.5608 19307.2517 5723.6513 195.6942 -335759.3910 23283.8137 0.0000 0.0000 44708.7151 -222414.7042 162.6380 -267123.4192 -222046.5428 162.6380 -1846.9626 -2201.6926 921491.4634 -1846.9626 -2201.6926
ENERGY: 446 19947.6803 19324.9005 5722.5430 194.3235 -335494.5705 23276.0450 0.0000 0.0000 44620.2943 -222408.7839 162.3164 -267029.0782 -222046.1621 162.3164 -1800.7518 -2216.7294 921491.4634 -1800.7518 -2216.7294
ENERGY: 447 19914.2847 19416.0210 5722.2107 191.8641 -335769.4398 23282.7457 0.0000 0.0000 44816.5085 -222425.8050 163.0301 -267242.3136 -222046.8343 163.0301 -1993.3113 -2253.0603 921491.4634 -1993.3113 -2253.0603
ENERGY: 448 20187.5923 19583.6801 5722.5765 188.5554 -336503.1801 23303.8903 0.0000 0.0000 45065.6670 -222451.2186 163.9365 -267516.8856 -222059.3482 163.9365 -2372.1880 -2303.7899 921491.4634 -2372.1880 -2303.7899
ENERGY: 449 20877.4063 19832.6987 5723.5713 184.8596 -337500.9072 23334.5921 0.0000 0.0000 45101.1672 -222446.6120 164.0657 -267547.7792 -222047.7100 164.0657 -2827.1083 -2356.1407 921491.4634 -2827.1083 -2356.1407
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 450 21754.4855 20108.1300 5724.4776 181.0897 -338419.3250 23364.6241 0.0000 0.0000 44854.3093 -222432.2087 163.1676 -267286.5180 -222048.7862 163.1676 -3116.6758 -2394.3897 921491.4634 -3116.6758 -2394.3897
ENERGY: 451 22355.5900 20357.7255 5724.7144 177.6517 -338952.0908 23381.8005 0.0000 0.0000 44542.6986 -222411.9102 162.0341 -266954.6087 -222048.8247 162.0341 -3074.2533 -2405.7798 921491.4634 -3074.2533 -2405.7798
ENERGY: 452 22246.2012 20536.0133 5723.8953 174.8859 -338927.1537 23378.0941 0.0000 0.0000 44452.9196 -222415.1441 161.7075 -266868.0638 -222059.6372 161.7075 -2659.9605 -2384.7568 921491.4634 -2659.9605 -2384.7568
ENERGY: 453 21399.8725 20641.1309 5722.2878 173.1350 -338392.7933 23354.5905 0.0000 0.0000 44683.7033 -222418.0732 162.5470 -267101.7764 -222043.5373 162.5470 -2048.3338 -2342.4668 921491.4634 -2048.3338 -2342.4668
ENERGY: 454 20248.3382 20654.1372 5720.2217 172.3637 -337567.1413 23320.6899 0.0000 0.0000 45008.1463 -222443.2443 163.7273 -267451.3906 -222041.8393 163.7273 -1453.4578 -2293.1450 921491.4634 -1453.4578 -2293.1450
ENERGY: 455 19486.7907 20584.7118 5718.4844 172.5169 -336790.6451 23290.4021 0.0000 0.0000 45086.5787 -222451.1605 164.0126 -267537.7392 -222040.8571 164.0126 -1151.8824 -2255.8572 921491.4634 -1151.8824 -2255.8572
ENERGY: 456 19493.3720 20440.6798 5717.7556 173.4248 -336350.1074 23274.9629 0.0000 0.0000 44811.4726 -222438.4397 163.0118 -267249.9123 -222055.3487 163.0118 -1305.5005 -2245.5823 921491.4634 -1305.5005 -2245.5823
ENERGY: 457 20047.4929 20251.9433 5718.5580 174.9241 -336395.8164 23277.8272 0.0000 0.0000 44521.8704 -222403.2004 161.9583 -266925.0708 -222049.4134 161.9583 -1906.4167 -2263.5014 921491.4634 -1906.4167 -2263.5014
ENERGY: 458 20585.8438 20019.2722 5720.7061 176.6081 -336835.0958 23294.7170 0.0000 0.0000 44632.7886 -222405.1600 162.3618 -267037.9487 -222051.2824 162.3618 -2684.6990 -2301.0428 921491.4634 -2684.6990 -2301.0428
ENERGY: 459 20903.4950 19784.9689 5724.0021 178.1985 -337468.1643 23318.6980 0.0000 0.0000 45113.9364 -222444.8654 164.1121 -267558.8018 -222053.1413 164.1121 -3350.5835 -2341.5798 921491.4634 -3350.5835 -2341.5798
TIMING: 460 CPU: 216.103, 0.457282/step Wall: 216.103, 0.457282/step, 0.00508091 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6141 19597.9063 5728.0971 179.4910 -338014.3765 23341.7998 0.0000 0.0000 45423.8564 -222480.6117 165.2395 -267904.4681 -222064.6836 165.2395 -3669.8204 -2365.2413 921491.4634 -3669.8204 -2365.2413
ENERGY: 461 21862.8762 19507.1074 5732.5752 180.4333 -338251.6212 23355.3932 0.0000 0.0000 45154.6139 -222458.6220 164.2601 -267613.2359 -222058.0507 164.2601 -3556.1667 -2361.1801 921491.4634 -3556.1667 -2361.1801
ENERGY: 462 22264.2254 19487.8108 5736.4822 180.9531 -337988.7165 23351.1083 0.0000 0.0000 44559.9292 -222408.2075 162.0968 -266968.1367 -222056.7215 162.0968 -2954.8200 -2323.4252 921491.4634 -2954.8200 -2323.4252
ENERGY: 463 21821.1791 19513.9014 5738.9361 181.1160 -337284.1022 23326.9474 0.0000 0.0000 44313.4570 -222388.5653 161.2002 -266702.0223 -222054.6243 161.2002 -2012.4424 -2264.0780 921491.4634 -2012.4424 -2264.0780
ENERGY: 464 20535.2460 19559.9271 5739.2518 181.0096 -336389.3835 23291.1938 0.0000 0.0000 44654.0266 -222428.7286 162.4391 -267082.7552 -222058.5731 162.4391 -1050.9228 -2205.5271 921491.4634 -1050.9228 -2205.5271
ENERGY: 465 19322.7826 19631.8854 5737.2898 180.7155 -335701.1530 23259.7387 0.0000 0.0000 45094.5689 -222474.1721 164.0416 -267568.7410 -222052.9390 164.0416 -512.3349 -2174.4011 921491.4634 -512.3349 -2174.4011
ENERGY: 466 19088.4509 19708.3582 5733.2107 180.2808 -335443.7723 23245.0599 0.0000 0.0000 45020.7911 -222467.6208 163.7733 -267488.4119 -222052.9787 163.7733 -630.3318 -2182.6713 921491.4634 -630.3318 -2182.6713
ENERGY: 467 19841.8070 19783.1743 5727.6703 179.7757 -335721.0950 23249.4525 0.0000 0.0000 44523.6667 -222415.5484 161.9649 -266939.2152 -222054.3497 161.9649 -1393.6035 -2232.5927 921491.4634 -1393.6035 -2232.5927
ENERGY: 468 20761.8485 19845.4943 5721.5089 179.2779 -336451.5665 23265.8121 0.0000 0.0000 44291.6586 -222385.9663 161.1209 -266677.6249 -222056.3591 161.1209 -2508.6720 -2314.1343 921491.4634 -2508.6720 -2314.1343
ENERGY: 469 21236.3019 19910.2022 5715.6824 178.8504 -337458.3202 23284.3957 0.0000 0.0000 44720.3204 -222412.5672 162.6802 -267132.8877 -222046.0750 162.6802 -3596.7411 -2405.7975 921491.4634 -3596.7411 -2405.7975
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1731 19972.8934 5710.9491 178.5947 -338383.2508 23297.0667 0.0000 0.0000 45346.4580 -222466.1156 164.9580 -267812.5736 -222047.6088 164.9580 -4259.6999 -2477.6834 921491.4634 -4259.6999 -2477.6834
ENERGY: 471 21732.8676 20054.6835 5707.9626 178.5890 -338913.2452 23297.5080 0.0000 0.0000 45471.3375 -222470.2971 165.4122 -267941.6345 -222047.5359 165.4122 -4290.5685 -2504.3178 921491.4634 -4290.5685 -2504.3178
ENERGY: 472 22081.2359 20161.5551 5707.0091 178.9047 -338870.6767 23279.4486 0.0000 0.0000 45028.5305 -222433.9929 163.8014 -267462.5234 -222059.5058 163.8014 -3659.7362 -2479.9187 921491.4634 -3659.7362 -2479.9187
ENERGY: 473 21866.1362 20289.3425 5707.9843 179.6165 -338307.7192 23240.7359 0.0000 0.0000 44634.5180 -222389.3859 162.3681 -267023.9039 -222043.8539 162.3681 -2556.3617 -2408.1660 921491.4634 -2556.3617 -2408.1660
ENERGY: 474 20842.9704 20372.0985 5710.2160 180.7466 -337438.4555 23189.2344 0.0000 0.0000 44733.2314 -222409.9581 162.7272 -267143.1895 -222041.2619 162.7272 -1295.5526 -2316.2731 921491.4634 -1295.5526 -2316.2731
ENERGY: 475 19674.2079 20371.7674 5712.9876 182.2512 -336604.2318 23142.3814 0.0000 0.0000 45070.2147 -222450.4216 163.9531 -267520.6363 -222039.4530 163.9531 -344.6451 -2232.2128 921491.4634 -344.6451 -2232.2128
ENERGY: 476 19235.7861 20282.0275 5715.7683 184.0125 -336100.0909 23115.8463 0.0000 0.0000 45106.0642 -222460.5860 164.0835 -267566.6502 -222053.6137 164.0835 -92.4052 -2183.0654 921491.4634 -92.4052 -2183.0654
ENERGY: 477 19704.7251 20145.9814 5718.4976 185.9230 -336101.8796 23114.2937 0.0000 0.0000 44812.3215 -222420.1374 163.0149 -267232.4588 -222044.8410 163.0149 -667.4949 -2171.8229 921491.4634 -667.4949 -2171.8229
ENERGY: 478 20493.4779 19974.7639 5721.0254 187.7262 -336537.4043 23131.2458 0.0000 0.0000 44627.0337 -222402.1313 162.3409 -267029.1651 -222047.4106 162.3409 -1807.1607 -2198.7956 921491.4634 -1807.1607 -2198.7956
ENERGY: 479 21125.3059 19793.3957 5723.3295 189.2099 -337215.5844 23156.6770 0.0000 0.0000 44802.1582 -222425.5082 162.9779 -267227.6664 -222050.5459 162.9779 -3089.8517 -2246.7917 921491.4634 -3089.8517 -2246.7917
TIMING: 480 CPU: 225.246, 0.457142/step Wall: 225.246, 0.457142/step, 0.00253968 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0326 19623.1965 5725.3111 190.1901 -337854.6789 23181.5117 0.0000 0.0000 45051.6820 -222458.7550 163.8856 -267510.4370 -222064.6209 163.8856 -4077.7326 -2291.4891 921491.4634 -4077.7326 -2291.4891
ENERGY: 481 22092.4851 19510.0433 5727.0952 190.6351 -338199.2482 23196.7958 0.0000 0.0000 45041.3374 -222440.8563 163.8480 -267482.1936 -222052.5265 163.8480 -4466.2391 -2305.6732 921491.4634 -4466.2391 -2305.6732
ENERGY: 482 22186.3465 19466.6794 5728.4964 190.3598 -338044.5417 23192.7474 0.0000 0.0000 44865.8523 -222414.0600 163.2096 -267279.9123 -222051.4112 163.2096 -4059.3094 -2278.0614 921491.4634 -4059.3094 -2278.0614
ENERGY: 483 21553.1412 19511.5744 5729.5660 189.3227 -337426.2183 23165.8740 0.0000 0.0000 44861.8971 -222414.8429 163.1953 -267276.7400 -222048.7671 163.1953 -2964.1718 -2216.4114 921491.4634 -2964.1718 -2216.4114
ENERGY: 484 20460.8924 19631.1938 5730.2465 187.5455 -336590.8884 23126.1351 0.0000 0.0000 45003.6033 -222451.2718 163.7107 -267454.8751 -222059.8743 163.7107 -1565.2422 -2143.1849 921491.4634 -1565.2422 -2143.1849
ENERGY: 485 19688.7718 19800.2990 5730.5256 185.2458 -335902.5866 23092.8470 0.0000 0.0000 44955.5727 -222449.3247 163.5360 -267404.8973 -222045.9607 163.5360 -422.1568 -2086.8735 921491.4634 -422.1568 -2086.8735
ENERGY: 486 19602.5426 19954.8175 5729.7198 182.4662 -335612.3569 23080.3807 0.0000 0.0000 44645.9118 -222416.5183 162.4096 -267062.4300 -222044.6761 162.4096 87.3180 -2070.0981 921491.4634 87.3180 -2070.0981
ENERGY: 487 19881.0927 20072.0212 5727.4348 179.4360 -335846.4483 23091.0544 0.0000 0.0000 44503.3493 -222392.0600 161.8910 -266895.4093 -222045.2408 161.8910 -192.2348 -2106.8840 921491.4634 -192.2348 -2106.8840
ENERGY: 488 20125.2102 20156.1360 5723.5441 176.4338 -336552.5454 23118.8617 0.0000 0.0000 44827.0555 -222425.3041 163.0685 -267252.3596 -222057.1939 163.0685 -1145.7537 -2194.6679 921491.4634 -1145.7537 -2194.6679
ENERGY: 489 20526.8873 20236.4608 5718.5749 173.8639 -337540.4656 23156.7311 0.0000 0.0000 45266.1004 -222461.8473 164.6656 -267727.9477 -222045.6086 164.6656 -2511.2406 -2316.7066 921491.4634 -2511.2406 -2316.7066
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7488 20292.9021 5712.8912 171.8438 -338458.1362 23196.4879 0.0000 0.0000 45213.5630 -222459.6994 164.4745 -267673.2624 -222048.2208 164.4745 -3823.4038 -2437.4154 921491.4634 -3823.4038 -2437.4154
ENERGY: 491 22430.4637 20312.1360 5707.3795 170.5404 -338984.5794 23226.0939 0.0000 0.0000 44733.0090 -222404.9569 162.7264 -267137.9659 -222049.4638 162.7264 -4629.6932 -2524.6214 921491.4634 -4629.6932 -2524.6214
ENERGY: 492 22612.9546 20289.6811 5702.9945 170.0208 -338937.5817 23232.7207 0.0000 0.0000 44542.1950 -222387.0151 162.0323 -266929.2102 -222060.3861 162.0323 -4606.8521 -2557.4729 921491.4634 -4606.8521 -2557.4729
ENERGY: 493 21558.2188 20260.7375 5700.7779 170.3200 -338358.0636 23214.0539 0.0000 0.0000 45033.8228 -222420.1326 163.8207 -267453.9555 -222046.5901 163.8207 -3796.3816 -2540.0995 921491.4634 -3796.3816 -2540.0995
ENERGY: 494 20068.3366 20225.0262 5700.9806 171.2193 -337454.3839 23183.0797 0.0000 0.0000 45622.2475 -222483.4940 165.9612 -268105.7415 -222044.0868 165.9612 -2500.8990 -2482.1068 921491.4634 -2500.8990 -2482.1068
ENERGY: 495 19383.2462 20186.8302 5703.5926 172.5416 -336566.9892 23159.4627 0.0000 0.0000 45484.1232 -222477.1926 165.4587 -267961.3158 -222041.5564 165.4587 -1249.6837 -2407.3056 921491.4634 -1249.6837 -2407.3056
ENERGY: 496 19722.4834 20130.6474 5708.0351 174.0933 -335998.7163 23154.2638 0.0000 0.0000 44699.5272 -222409.6662 162.6046 -267109.1934 -222049.0672 162.6046 -478.8999 -2343.4751 921491.4634 -478.8999 -2343.4751
ENERGY: 497 20212.6670 20059.9178 5713.4613 175.7242 -335952.5050 23166.3548 0.0000 0.0000 44261.0288 -222363.3512 161.0095 -266624.3800 -222042.7502 161.0095 -421.0234 -2316.7928 921491.4634 -421.0234 -2316.7928
ENERGY: 498 20182.0167 19957.1217 5718.5597 177.2604 -336366.4941 23189.3588 0.0000 0.0000 44728.2534 -222413.9235 162.7091 -267142.1768 -222044.5221 162.7091 -993.4682 -2331.6472 921491.4634 -993.4682 -2331.6472
ENERGY: 499 20158.0679 19847.7309 5722.4090 178.6361 -337058.4831 23219.2407 0.0000 0.0000 45439.2644 -222493.1341 165.2956 -267932.3985 -222047.2064 165.2956 -2020.8689 -2376.3390 921491.4634 -2020.8689 -2376.3390
Info: Benchmark time: 4 CPUs 0.456378 s/step 5.28215 days/ns 3224.29 MB memory
TIMING: 500 CPU: 234.317, 0.453524/step Wall: 234.317, 0.453524/step, 0 hours remaining, 3224.289062 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8935 19756.6584 5724.4523 179.8271 -337741.4197 23251.1012 0.0000 0.0000 45359.0780 -222495.4092 165.0039 -267854.4872 -222061.0910 165.0039 -3197.5167 -2425.4141 921491.4634 -3197.5167 -2425.4141
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.781 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.781 MB of memory in use
====================================================
WallClock: 241.439987 CPUTime: 241.439987 Memory: 3229.781250 MB
[Partition 0][Node 0] End of program
Application 1110708 resources: utime ~949s, stime ~18s, Rss ~127184, inblocks ~66552, outblocks ~71876
Displaying status file:
verified
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0
WALL=241.439987
CPU=241.439987
MEM=3229.781250
total 744
-rwxr-xr-x 1 bwjenkins BW_System 18 Dec 16 22:50 cputime
-rwxr-xr-x 1 bwjenkins BW_System 19 Dec 16 22:50 memory
-rwxr-xr-x 1 bwjenkins BW_System 18 Dec 16 22:50 wallclock
-rwxr-xr-x 1 bwjenkins BW_System 9 Dec 16 22:50 status
-rwxr-xr-x 1 bwjenkins BW_System 189493 Dec 16 22:50 test.log
-rwxr-xr-x 1 bwjenkins BW_System 505293 Dec 16 22:45 build.log
drwxr-xr-x 2 bwjenkins BW_System 4096 Dec 16 22:45 bin
drwxr-xr-x 11 bwjenkins BW_System 4096 Dec 16 22:35 NAMD_2.10_Source
drwxr-xr-x 5 bwjenkins BW_System 4096 Dec 16 22:23 man
drwxr-xr-x 2 bwjenkins BW_System 4096 Dec 16 22:23 include
drwxr-xr-x 4 bwjenkins BW_System 4096 Dec 16 22:23 lib
-rwxr-xr-x 1 bwjenkins BW_System 1987 Dec 16 22:21 build-notes
-rwxr-xr-x 1 bwjenkins BW_System 4016 Dec 16 22:21 rebuild
lrwxrwxrwx 1 bwjenkins BW_System 7 Dec 16 22:21 relink -> rebuild
-rwxr-xr-x 1 bwjenkins BW_System 761 Dec 16 22:21 remodule
-rwxr-xr-x 1 bwjenkins BW_System 2926 Dec 16 22:21 retest
drwxr-xr-x 12 bwjenkins BW_System 4096 Sep 8 2010 tcl8.5.9
[SSH] completed
[SSH] exit-status: 0
[workspace] $ /bin/sh -xe /tmp/jenkins13899361882063775303.sh
+ rm -rf /var/lib/jenkins/jobs/NAMD/workspace/cputime /var/lib/jenkins/jobs/NAMD/workspace/memory /var/lib/jenkins/jobs/NAMD/workspace/namd /var/lib/jenkins/jobs/NAMD/workspace/wallclock
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/cputime /var/lib/jenkins/jobs/NAMD/workspace
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/memory /var/lib/jenkins/jobs/NAMD/workspace
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/wallclock /var/lib/jenkins/jobs/NAMD/workspace
Recording plot data
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/wallclock
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/cputime
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/memory
Finished: SUCCESS