Started by timer Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/cray-hdf5-parallel-bw/workspace [SSH] script: module load cray-hdf5-parallel ~/bin/myenv.sh mkdir hdf5-jenkins cd hdf5-jenkins rm -rf * cp ~arnoldg/hdf5/ph5example.c . cc -v -o ph5example ph5example.c echo "#!/bin/bash" > hdf5.pbs echo "#PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p" >> hdf5.pbs echo "cd ~/hdf5-jenkins" >> hdf5.pbs echo "aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out" >> hdf5.pbs echo "aprun -n 1 hostname > stream-compute-node" >> hdf5.pbs cat -n hdf5.pbs MYJOBID=`qsub hdf5.pbs` echo MYJOBID=$MYJOBID ~/bin/wait_for.sh $MYJOBID # do some validation module unload cray-hdf5-parallel module load cray-hdf5 h5dump ParaEg0.h5 cat ph5example.out echo "=== JOB RAN ON ===" cat ~/hdf5-jenkins/stream-compute-node rm -f ~/hdf5-jenkins/stream-compute-node [SSH] executing... mkdir: cannot create directory `hdf5-jenkins': File exists rm /tmp/pe_18711/ph5example_1.s /opt/cray/cce/8.7.7/cce/x86_64/bin/ccfe -hc -hcpu=interlagos -D __CRAYXE -D __CRAY_INTERLAGOS -D __CRAYXT_COMPUTE_LINUX_TARGET -hnetwork=gemini -nostdinc -isystem /opt/cray/cce/8.7.7/cce/x86_64/include/craylibs -isystem /opt/cray/cce/8.7.7/cce/x86_64/include/basic -isystem /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0/include -isystem /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0/include-fixed -isystem /opt/gcc/6.1.0/snos/include -isystem /usr/include -I /opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/include -I /opt/cray/libsci/18.12.1/CRAY/8.6/x86_64/include -I /opt/cray/hdf5-parallel/1.10.2.0/cray/8.6/include -I /opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I /opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I /opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/include -I /opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I /opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/include -I /opt/cray/pmi/5.0.14/include -I /opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I /opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/include -I /usr/local/include -I /opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I /opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I /opt/cray-hss-devel/7.2.0/include -D__PEDRVR_GCC_BASE_ACTIVE__ -hpl=/tmp/pe_18711//pldir -rx8503 -ru87000 -CZ /tmp/pe_18711/ph5example.T -Cx -CX /tmp/pe_18711/ph5example.xml -hdecompile=/mnt/a/u/system/bwjenkins/hdf5-jenkins/ph5example. -S /tmp/pe_18711/ph5example_1.s -hipa3 -ufile_id=1 ph5example.c /opt/cray/cce/8.7.7/cce/x86_64/bin/optcg /tmp/pe_18711//pldir 1 === RUNNING /u/system/bwjenkins/bin/myenv.sh === HOST=h2ologin1 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest rmg-spp rmg-spp-topo setsm_benchmark setsm_rsync SPP-PPM stripe8 sw_config SWTools-BWCI sw_workdir tests wrf wrf-spp my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.4 2) eswrap/1.3.3-1.020200.1280.0 3) cce/8.7.7 4) craype-network-gemini 5) craype/2.5.16 6) cray-libsci/18.12.1 7) udreg/2.3.2-1.0502.10518.2.17.gem 8) ugni/6.0-1.0502.10863.8.28.gem 9) pmi/5.0.14 10) dmapp/7.0.1-1.0502.11080.8.74.gem 11) gni-headers/4.0-1.0502.10859.7.8.gem 12) xpmem/0.1-2.0502.64982.5.3.gem 13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem 14) alps/5.2.4-2.0502.9774.31.12.gem 15) rca/1.0.0-2.0502.60530.1.63.gem 16) atp/2.0.4 17) PrgEnv-cray/5.2.82 18) cray-mpich/7.7.4 19) craype-interlagos 20) torque/6.1.2 21) moab/9.1.2-sles11 22) openssh/7.5p1 23) xalt/0.7.6.local 24) scripts 25) OpenSSL/1.0.2m 26) cURL/7.59.0 27) git/2.17.0 28) wget/1.19.4 29) user-paths 30) gnuplot/5.0.5 31) darshan/3.1.3 32) cray-hdf5-parallel/1.10.2.0 /opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/bin/as -o /tmp/pe_18711/ph5example_1.o --64 /tmp/pe_18711/ph5example_1.s rm /tmp/pe_18711/ph5example_1.s /opt/xalt/0.7.6/sles11.3/bin/ld /usr/lib64//crt1.o /usr/lib64//crti.o /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtbeginT.o /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtfastmath.o /opt/cray/cce/8.7.7/cce/x86_64/lib/qc_fastmath.o /opt/cray/cce/8.7.7/cce/x86_64/lib/no_mmap.o /tmp/pe_18711/ph5example_1.o -Bstatic -rpath=/opt/cray/cce/8.7.7/cce/x86_64/lib -L /opt/gcc/6.1.0/snos/lib64 -rpath=/opt/cray/gcc-libs -L /opt/cray/dmapp/default/lib64 -L /opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/lib -L /opt/cray/libsci/18.12.1/CRAY/8.6/x86_64/lib -L /opt/cray/hdf5-parallel/1.10.2.0/cray/8.6/lib -L /sw/xe/darshan/3.1.3/darshan-3.1.3-longusername/lib -L /opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L /opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 -L /opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64 -L /opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64 -L /opt/cray/pmi/5.0.14/lib64 -L /opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64 -L /opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64 -L /opt/cray/atp/2.0.4/libApp -L /opt/cray/cce/8.7.7/cce/x86_64/lib/pkgconfig/../ -L /usr/local/lib -L /opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/lib64 @/sw/xe/darshan/3.1.3/darshan-3.1.3-longusername/share/ld-opts/darshan-base-ld-opts -L /usr/lib64 -L /lib64 -rpath=/usr/lib64 -rpath=/lib64 -lfmpich -lmpichcxx --start-group -ldarshan -ldarshan-stubs --end-group -lz --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lpthread -lhdf5_hl_parallel -lrt -lz -ldl -lm -lpthread -lhdf5_parallel -lrt -lz -ldl -lm -lpthread -lsci_cray_mpi_mp -lm -lf -lsci_cray_mp -lmpich_cray -lrt -lugni -lpthread -lpmi -lsci_cray_mp -lcraymp -lm -lpthread -lf -lhugetlbfs -lpgas-dmapp -lfi -lu -lrt -ldmapp -lugni -ludreg -lpthread -lm -lcray-c++-rts -lstdc++ -lxpmem -ldmapp -lpthread -ludreg -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lugni -lpthread -lalpsutil -lpthread -lrca -lquadmath -lm -lomp -lrt -lcraymp -lpthread -lrt -ldl -lcray-c++-rts -lstdc++ -lm -lmodules -lm -lrt -lfi -lm -lquadmath -lrt -lcraymath -lm -lgfortran -lquadmath -lrt -lf -lm -lpthread -lrt -lu -lrt -ldl -lcray-c++-rts -lstdc++ -lm -lcsup -lrt --as-needed -latomic --no-as-needed -lstdc++ -lpthread --start-group -lc -lcsup -lgcc_eh -lm -lgcc --end-group -T/opt/cray/cce/8.7.7/cce/x86_64/lib/2.23.1.cce.ld -L /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0 -L /opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib -EL -o ph5example --undefined=__pthread_initialize_minimal /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtend.o /usr/lib64//crtn.o rm /tmp/pe_18711/ph5example_1.o /opt/cray/cce/8.7.7/binutils/x86_64/bin/objcopy --remove-section=.note.ftn_module_data ph5example rm /tmp/pe_18711//pldir/ph5example_1.inl rm /tmp/pe_18711//pldir/iline_1 rm /tmp/pe_18711//pldir/PL_global_data rm /tmp/pe_18711//pldir/gline_1 rm /tmp/pe_18711//pldir/PL_module_list rm /tmp/pe_18711//pldir/PL_path rmdir /tmp/pe_18711//pldir rm /tmp/pe_18711//ph5example.T rm /tmp/pe_18711//ph5example.Tfe rm /tmp/pe_18711//ph5example_1.cif.Ttmp rm /tmp/pe_18711//ph5example.xml rm /tmp/pe_18711//ph5example_1.xml.Ttmp rmdir /tmp/pe_18711/ 1 #!/bin/bash 2 #PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p 3 cd ~/hdf5-jenkins 4 aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out 5 aprun -n 1 hostname > stream-compute-node INFO: Job submitted to account: jnc MYJOBID=13063485.bw === RUNNING /u/system/bwjenkins/bin/wait_for.sh === Fri Nov 19 23:01:08 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:06:08 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:11:08 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:16:09 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:21:09 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:26:09 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:31:10 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:36:10 CST 2021: waiting for 13063485.bw to finish Fri Nov 19 23:41:10 CST 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714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, (8,0): 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, (8,13): 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, (9,0): 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, (9,13): 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, (10,0): 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, (10,10): 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, (10,20): 1021, 1022, 1023, 1024, (11,0): 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1109, 1110, (11,10): 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, (11,20): 1121, 1122, 1123, 1124, (12,0): 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, (12,10): 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, (12,20): 1221, 1222, 1223, 1224, (13,0): 1301, 1302, 1303, 1304, 1305, 1306, 1307, 1308, 1309, 1310, (13,10): 1311, 1312, 1313, 1314, 1315, 1316, 1317, 1318, 1319, 1320, (13,20): 1321, 1322, 1323, 1324, (14,0): 1401, 1402, 1403, 1404, 1405, 1406, 1407, 1408, 1409, 1410, (14,10): 1411, 1412, 1413, 1414, 1415, 1416, 1417, 1418, 1419, 1420, (14,20): 1421, 1422, 1423, 1424, (15,0): 1501, 1502, 1503, 1504, 1505, 1506, 1507, 1508, 1509, 1510, (15,10): 1511, 1512, 1513, 1514, 1515, 1516, 1517, 1518, 1519, 1520, (15,20): 1521, 1522, 1523, 1524, (16,0): 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 1609, 1610, (16,10): 1611, 1612, 1613, 1614, 1615, 1616, 1617, 1618, 1619, 1620, (16,20): 1621, 1622, 1623, 1624, (17,0): 1701, 1702, 1703, 1704, 1705, 1706, 1707, 1708, 1709, 1710, (17,10): 1711, 1712, 1713, 1714, 1715, 1716, 1717, 1718, 1719, 1720, (17,20): 1721, 1722, 1723, 1724, (18,0): 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, (18,10): 1811, 1812, 1813, 1814, 1815, 1816, 1817, 1818, 1819, 1820, (18,20): 1821, 1822, 1823, 1824, (19,0): 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909, 1910, (19,10): 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919, 1920, (19,20): 1921, 1922, 1923, 1924, (20,0): 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, (20,10): 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, (20,20): 2021, 2022, 2023, 2024, (21,0): 2101, 2102, 2103, 2104, 2105, 2106, 2107, 2108, 2109, 2110, (21,10): 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, (21,20): 2121, 2122, 2123, 2124, (22,0): 2201, 2202, 2203, 2204, 2205, 2206, 2207, 2208, 2209, 2210, (22,10): 2211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2219, 2220, (22,20): 2221, 2222, 2223, 2224, (23,0): 2301, 2302, 2303, 2304, 2305, 2306, 2307, 2308, 2309, 2310, (23,10): 2311, 2312, 2313, 2314, 2315, 2316, 2317, 2318, 2319, 2320, (23,20): 2321, 2322, 2323, 2324 } } } } Parallel test files are: ./ParaEg0.h5 ./ParaEg1.h5 -------------------------------- Proc 0: *** testing PHDF5 dataset using split communicators... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset using split communicators... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset collective write... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset collective write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent read... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent read... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset collective read... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset collective read... -------------------------------- =================================== PHDF5 tests finished with no errors =================================== Application 108153055 resources: utime ~0s, stime ~1s, Rss ~9808, inblocks ~11305, outblocks ~29212 === JOB RAN ON === nid03631 Application 108153063 resources: utime ~0s, stime ~1s, Rss ~9808, inblocks ~19, outblocks ~28 [SSH] completed [SSH] exit-status: 0 [workspace] $ /bin/sh -xe /tmp/jenkins8642630691201706407.sh + scp 'BW_REMOTE:~/hdf5-jenkins/*' /var/lib/jenkins/jobs/cray-hdf5-parallel-bw/workspace Finished: SUCCESS