Started by user tbouvet
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/cray-hdf5-parallel-h2ologin4/workspace
[SSH] script:

module load cray-hdf5-parallel
~/bin/myenv.sh
mkdir hdf5-jenkins
cd hdf5-jenkins
rm -rf *
cp ~arnoldg/hdf5/ph5example.c .
cc -v -o ph5example ph5example.c

echo "#!/bin/bash" > hdf5.pbs
echo "#PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p" >> hdf5.pbs
echo "cd  ~/hdf5-jenkins" >> hdf5.pbs
echo "aprun -n 2 ~/hdf5-jenkins/ph5example -c  > ph5example.out" >> hdf5.pbs
echo "aprun -n 1 hostname > stream-compute-node" >> hdf5.pbs

cat -n hdf5.pbs

MYJOBID=`qsub hdf5.pbs`
echo MYJOBID=$MYJOBID
~/bin/wait_for.sh $MYJOBID

# do some validation
module unload cray-hdf5-parallel
module load cray-hdf5
h5dump ParaEg0.h5
cat ph5example.out

echo "=== JOB RAN ON ==="
cat ~/hdf5-jenkins/stream-compute-node
rm -f ~/hdf5-jenkins/stream-compute-node

[SSH] executing...
mkdir: cannot create directory `hdf5-jenkins': File exists
cp: cannot stat `/u/staff/arnoldg/hdf5/ph5example.c': Permission denied
CC-2151 craycc: ERROR in command line
  The source file "ph5example.c" is unavailable.
CC-2107 craycc: ERROR in command line
  No valid filenames are specified on the command line.
rm /tmp/pe_6790//pldir/PL_module_list
rm /tmp/pe_6790//pldir/PL_global_data
rm /tmp/pe_6790//pldir/PL_path
rmdir /tmp/pe_6790//pldir
rmdir /tmp/pe_6790/
=== RUNNING /u/system/bwjenkins/bin/myenv.sh ===
HOST=h2ologin2
HOME=/u/system/bwjenkins
SCRATCH=/u/system/bwjenkins/scratch
     ls SCRATCH:
mdtest
rmg-spp
rmg-spp-topo
setsm_benchmark
setsm_rsync
SPP-PPM
stripe8
sw_config
SWTools-BWCI
sw_workdir
tests
wrf
wrf-spp
     my id:
uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd)
Currently Loaded Modulefiles:
  1) modules/3.2.10.4
  2) eswrap/1.3.3-1.020200.1280.0
  3) cce/8.7.7
  4) craype-network-gemini
  5) craype/2.5.16
  6) cray-libsci/18.12.1
  7) udreg/2.3.2-1.0502.10518.2.17.gem
  8) ugni/6.0-1.0502.10863.8.28.gem
  9) pmi/5.0.14
 10) dmapp/7.0.1-1.0502.11080.8.74.gem
 11) gni-headers/4.0-1.0502.10859.7.8.gem
 12) xpmem/0.1-2.0502.64982.5.3.gem
 13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem
 14) alps/5.2.4-2.0502.9774.31.12.gem
 15) rca/1.0.0-2.0502.60530.1.63.gem
 16) atp/2.0.4
 17) PrgEnv-cray/5.2.82
 18) cray-mpich/7.7.4
 19) craype-interlagos
 20) torque/6.0.4
 21) moab/9.1.2-sles11
 22) java/jdk1.8.0_51
 23) globus/6.0
 24) gsissh/7.5p1b
 25) xalt/0.7.6.local
 26) scripts
 27) OpenSSL/1.0.2m
 28) cURL/7.59.0
 29) git/2.17.0
 30) wget/1.19.4
 31) user-paths
 32) gnuplot/5.0.5
 33) darshan/3.1.3
 34) cray-hdf5-parallel/1.10.2.0
     1	#!/bin/bash
     2	#PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p
     3	cd  ~/hdf5-jenkins
     4	aprun -n 2 ~/hdf5-jenkins/ph5example -c  > ph5example.out
     5	aprun -n 1 hostname > stream-compute-node
INFO: Job submitted to account: jnc
MYJOBID=11042049.bw
=== RUNNING /u/system/bwjenkins/bin/wait_for.sh ===
Fri Jan 31 14:13:47 CST 2020: waiting for 11042049.bw to finish
Fri Jan 31 14:18:47 CST 2020: waiting for 11042049.bw to finish
qstat: Unknown Job Id Error 11042049.bw
11042049.bw finished
h5dump error: unable to open file "ParaEg0.h5"
=== JOB RAN ON ===
nid12859
Application 84532993 resources: utime ~0s, stime ~1s, Rss ~22860, inblocks ~19, outblocks ~28

[SSH] completed
[SSH] exit-status: 0

[workspace] $ /bin/sh -xe /tmp/jenkins9106108645272330668.sh
+ scp 'BW_REMOTE_2:~/hdf5-jenkins/*' /var/lib/jenkins/jobs/cray-hdf5-parallel-h2ologin4/workspace
Finished: SUCCESS