Started by timer
Building on master in workspace /var/lib/jenkins/workspace/namd-spp
executing script:

rm -rf namd-spp/
mkdir namd-spp/
cd namd-spp/
tar xvf ~/namd-spp-staging/namd-spp-1.0.tar
cd namd-spp-1.0
cat -n build.sh
./build.sh
cd run/
cat -n namd.100.cpu.pbs

MYJOBID=`qsub namd.100.cpu.pbs`
echo MYJOBID=$MYJOBID
~/bin/wait_for.sh $MYJOBID

cd  *.bw   # the job makes a directory like <jobid>.bw
grep ENERGY *.bw
MYWALLCLOCK=`grep WallClock *.bw | cut -d' ' -f2` 
echo "YVALUE= $MYWALLCLOCK" > ~/namd-spp/wallclock.txt
cat -n ~/namd-spp/wallclock.txt

namd-spp-1.0/
namd-spp-1.0/build.sh
namd-spp-1.0/tcl8.5.9-crayxe-threaded.tar.gz
namd-spp-1.0/run/
namd-spp-1.0/run/namd.4500.cpu.pbs
namd-spp-1.0/run/namd.11000.cpu.pbs
namd-spp-1.0/run/namd.2100.gpu.pbs
namd-spp-1.0/run/chromat100/
namd-spp-1.0/run/chromat100/chromat100-in.coor
namd-spp-1.0/run/chromat100/final.js.inter.bin
namd-spp-1.0/run/chromat100/final.js.inter
namd-spp-1.0/run/chromat100/chromat100-in.vel
namd-spp-1.0/run/chromat100/peta-chromat.qsub
namd-spp-1.0/run/chromat100/chromat100-in.xsc
namd-spp-1.0/run/chromat100/peta-chromat-restart.qsub
namd-spp-1.0/run/chromat100/chromat100-restart.namd
namd-spp-1.0/run/chromat100/parameters/
namd-spp-1.0/run/chromat100/parameters/par_all27_prot_na.inp
namd-spp-1.0/run/chromat100/parameters/par_all27_prot_lipid_cmap.inp
namd-spp-1.0/run/chromat100/parameters/qh2.par
namd-spp-1.0/run/chromat100/parameters/par_heme.inp
namd-spp-1.0/run/chromat100/parameters/top_all27_prot_lipidM.inp
namd-spp-1.0/run/chromat100/parameters/par_fes.inp
namd-spp-1.0/run/chromat100/parameters/cofactors.par
namd-spp-1.0/run/chromat100/parameters/all27_prot_lipid_cmap.par
namd-spp-1.0/run/chromat100/parameters/par_all36_lipid.prm
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all27_prot_na.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all27_prot_lipid_cmap.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/qh2.par
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_heme.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_fes.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all22_prot_cmap.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all27_prot_lipid.prm
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all27_prot_lipid_na.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/tail-internal-unit.par
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/par_all27_prot_na.prm
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_parameters/tail-endcap.par
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_prot_na.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_fes.inp~
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_fes.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_CY2_FES_HEME_HS2-reduced-Fe2S2.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_prot_lipidM.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_heme_c1.inp~
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_prot_lipid_na.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_heme_c1.inp-orig
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_CY2_HS2_FES_HMR-for-reduced-Fe2S2_with-CMAP.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_heme_c1.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_na_lipid.rtf
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all22_prot_cmap.inp
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_prot_na.rtf
namd-spp-1.0/run/chromat100/parameters/bc1_top_par/bc1_topologies/top_all27_prot_na_bc1-cofactors.rtf
namd-spp-1.0/run/chromat100/parameters/rhodopin-glucoside.par
namd-spp-1.0/run/chromat100/parameters/par_all22_prot_cmap.inp
namd-spp-1.0/run/chromat100/parameters/par_all27_prot_lipid.prm
namd-spp-1.0/run/chromat100/parameters/all27_prot_lipid_cmap-wcofactors.par
namd-spp-1.0/run/chromat100/parameters/par_all27_prot_lipid_na.inp
namd-spp-1.0/run/chromat100/parameters/top_all36_lipid.rtf
namd-spp-1.0/run/chromat100/parameters/tail-internal-unit.par
namd-spp-1.0/run/chromat100/parameters/par_all27_prot_na.prm
namd-spp-1.0/run/chromat100/parameters/tail-endcap.par
namd-spp-1.0/run/chromat100/parameters/all27_prot_lipid_cmap-test.par
namd-spp-1.0/run/chromat100/chromat100.namd
namd-spp-1.0/run/chromat100/chromat100-bench.namd
namd-spp-1.0/run/namd.100.gpu.pbs
namd-spp-1.0/run/namd.100.cpu.pbs
namd-spp-1.0/run/namd.800.gpu.pbs
namd-spp-1.0/NAMD_2.12b1_Source.tar.gz
namd-spp-1.0/clean.sh
     1	#!/bin/bash
     2	
     3	tar zxvf NAMD_2.12b1_Source.tar.gz
     4	ln -s NAMD_2.12b1_Source namd
     5	pushd namd
     6	tar zxvf ../tcl8.5.9-crayxe-threaded.tar.gz
     7	ln -s tcl8.5.9-crayxe-threaded ./tcl
     8	
     9	tar xvf charm-6.7.1.tar
    10	
    11	module swap PrgEnv-cray PrgEnv-gnu
    12	module load fftw rca craype-hugepages8M
    13	
    14	module list
    15	
    16	cd charm-6.7.1
    17	./build charm++ gni-crayxe smp --with-production -j8
    18	cd ..
    19	
    20	./config CRAY-XE-gnu --with-fftw --with-fftw3 --fftw-prefix $FFTW_DIR/.. --with-memopt --charm-arch gni-crayxe-smp 
    21	cd CRAY-XE-gnu/
    22	make -j8
    23	cd ..
    24	mv CRAY-XE-gnu CRAY-XE-gnu-cpu
    25	
    26	cp CRAY-XE-gnu-cpu/namd2 ../run/namd2-cpu
    27	
    28	module load cudatoolkit
    29	./config CRAY-XE-gnu --with-fftw --with-fftw3 --fftw-prefix $FFTW_DIR/.. --with-memopt --with-cuda --charm-arch gni-crayxe-smp 
    30	cd CRAY-XE-gnu
    31	make -j8
    32	cd ..
    33	mv CRAY-XE-gnu CRAY-XE-gnu-gpu
    34	
    35	cp CRAY-XE-gnu-gpu/namd2 ../run/namd2-gpu
    36	popd
NAMD_2.12b1_Source/
NAMD_2.12b1_Source/lib/
NAMD_2.12b1_Source/lib/init.tcl
NAMD_2.12b1_Source/lib/colvars/
NAMD_2.12b1_Source/lib/colvars/CVS/
NAMD_2.12b1_Source/lib/colvars/CVS/Repository
NAMD_2.12b1_Source/lib/colvars/CVS/Entries
NAMD_2.12b1_Source/lib/colvars/CVS/Tag
NAMD_2.12b1_Source/lib/colvars/CVS/Root
NAMD_2.12b1_Source/lib/colvars/pathCV.tcl
NAMD_2.12b1_Source/lib/colvars/test_scripted_gradients.tcl
NAMD_2.12b1_Source/lib/abf/
NAMD_2.12b1_Source/lib/abf/pkgIndex.tcl
NAMD_2.12b1_Source/lib/abf/zCoord.tcl
NAMD_2.12b1_Source/lib/abf/abf.tcl
NAMD_2.12b1_Source/lib/abf/CVS/
NAMD_2.12b1_Source/lib/abf/CVS/Entries
NAMD_2.12b1_Source/lib/abf/CVS/Root
NAMD_2.12b1_Source/lib/abf/CVS/Repository
NAMD_2.12b1_Source/lib/abf/CVS/Tag
NAMD_2.12b1_Source/lib/abf/vectors.tcl
NAMD_2.12b1_Source/lib/abf/distance-com.tcl
NAMD_2.12b1_Source/lib/abf/zCoord-1atom.tcl
NAMD_2.12b1_Source/lib/abf/abf_script.tcl
NAMD_2.12b1_Source/lib/abf/distance.tcl
NAMD_2.12b1_Source/lib/abf/xyDistance.tcl
NAMD_2.12b1_Source/lib/abf/abscissa.tcl
NAMD_2.12b1_Source/lib/ramd/
NAMD_2.12b1_Source/lib/ramd/CVS/
NAMD_2.12b1_Source/lib/ramd/CVS/Entries
NAMD_2.12b1_Source/lib/ramd/CVS/Root
NAMD_2.12b1_Source/lib/ramd/CVS/Tag
NAMD_2.12b1_Source/lib/ramd/CVS/Repository
NAMD_2.12b1_Source/lib/ramd/examples/
NAMD_2.12b1_Source/lib/ramd/examples/README.examples
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/example_ramd.namdout
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/CVS/
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/CVS/Tag
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/CVS/Root
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/CVS/Repository
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd_output/CVS/Entries
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/example_ramd-md.namdout
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/CVS/
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/CVS/Repository
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/CVS/Root
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/CVS/Tag
NAMD_2.12b1_Source/lib/ramd/examples/example_ramd-md_output/CVS/Entries
NAMD_2.12b1_Source/lib/ramd/examples/run_ramd-md_example.sh
NAMD_2.12b1_Source/lib/ramd/examples/CVS/
NAMD_2.12b1_Source/lib/ramd/examples/CVS/Entries
NAMD_2.12b1_Source/lib/ramd/examples/CVS/Repository
NAMD_2.12b1_Source/lib/ramd/examples/CVS/Tag
NAMD_2.12b1_Source/lib/ramd/examples/CVS/Root
NAMD_2.12b1_Source/lib/ramd/examples/run_ramd_example.sh
NAMD_2.12b1_Source/lib/ramd/scripts/
NAMD_2.12b1_Source/lib/ramd/scripts/ramd-4.1.tcl
NAMD_2.12b1_Source/lib/ramd/scripts/CVS/
NAMD_2.12b1_Source/lib/ramd/scripts/CVS/Root
NAMD_2.12b1_Source/lib/ramd/scripts/CVS/Repository
NAMD_2.12b1_Source/lib/ramd/scripts/CVS/Entries
NAMD_2.12b1_Source/lib/ramd/scripts/CVS/Tag
NAMD_2.12b1_Source/lib/ramd/scripts/ramd-4.1_script.tcl
NAMD_2.12b1_Source/lib/ramd/scripts/vectors.tcl
NAMD_2.12b1_Source/lib/ramd/README
NAMD_2.12b1_Source/lib/abf_integrate/
NAMD_2.12b1_Source/lib/abf_integrate/abf_data.cpp
NAMD_2.12b1_Source/lib/abf_integrate/CVS/
NAMD_2.12b1_Source/lib/abf_integrate/CVS/Tag
NAMD_2.12b1_Source/lib/abf_integrate/CVS/Root
NAMD_2.12b1_Source/lib/abf_integrate/CVS/Repository
NAMD_2.12b1_Source/lib/abf_integrate/CVS/Entries
NAMD_2.12b1_Source/lib/abf_integrate/abf_integrate.cpp
NAMD_2.12b1_Source/lib/abf_integrate/abf_data.h
NAMD_2.12b1_Source/lib/replica/
NAMD_2.12b1_Source/lib/replica/umbrella2d/
NAMD_2.12b1_Source/lib/replica/umbrella2d/job1.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/alanin.pdb
NAMD_2.12b1_Source/lib/replica/umbrella2d/CVS/
NAMD_2.12b1_Source/lib/replica/umbrella2d/CVS/Repository
NAMD_2.12b1_Source/lib/replica/umbrella2d/CVS/Tag
NAMD_2.12b1_Source/lib/replica/umbrella2d/CVS/Entries
NAMD_2.12b1_Source/lib/replica/umbrella2d/CVS/Root
NAMD_2.12b1_Source/lib/replica/umbrella2d/job0.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/alanin.psf
NAMD_2.12b1_Source/lib/replica/umbrella2d/colvars.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/mplexjob0.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/stretch_alanin.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/alanin.params
NAMD_2.12b1_Source/lib/replica/umbrella2d/mplexjob1.conf
NAMD_2.12b1_Source/lib/replica/umbrella2d/alanin_base.namd
NAMD_2.12b1_Source/lib/replica/umbrella.namd
NAMD_2.12b1_Source/lib/replica/FEP_wca/
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/sort-data-fe.cpp
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/wham-fep.cpp
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/fep_solv.conf
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/sum_fe.pl
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/get_fe.sh
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/wham_data_solv.sh
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/extract-repul.cpp
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/CVS/
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/CVS/Tag
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/CVS/Repository
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/CVS/Entries
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/CVS/Root
NAMD_2.12b1_Source/lib/replica/FEP_wca/wham/wham_fe.sh
NAMD_2.12b1_Source/lib/replica/FEP_wca/solv_benz_namd.psf
NAMD_2.12b1_Source/lib/replica/FEP_wca/fep_solv_base.namd
NAMD_2.12b1_Source/lib/replica/FEP_wca/solv_benz_namd.pdb
NAMD_2.12b1_Source/lib/replica/FEP_wca/CVS/
NAMD_2.12b1_Source/lib/replica/FEP_wca/CVS/Repository
NAMD_2.12b1_Source/lib/replica/FEP_wca/CVS/Root
NAMD_2.12b1_Source/lib/replica/FEP_wca/CVS/Tag
NAMD_2.12b1_Source/lib/replica/FEP_wca/CVS/Entries
NAMD_2.12b1_Source/lib/replica/FEP_wca/solv_benz.fep
NAMD_2.12b1_Source/lib/replica/FEP_wca/par_all22_prot_cmap.inp
NAMD_2.12b1_Source/lib/replica/FEP_wca/readme.txt
NAMD_2.12b1_Source/lib/replica/FEP_wca/fep_solv.conf
NAMD_2.12b1_Source/lib/replica/FEP_wca.namd
NAMD_2.12b1_Source/lib/replica/example/
NAMD_2.12b1_Source/lib/replica/example/unfolded.pdb
NAMD_2.12b1_Source/lib/replica/example/mplexjob1.conf
NAMD_2.12b1_Source/lib/replica/example/job0.conf
NAMD_2.12b1_Source/lib/replica/example/alanin.pdb
NAMD_2.12b1_Source/lib/replica/example/mplexjob0.conf
NAMD_2.12b1_Source/lib/replica/example/load_all.vmd
NAMD_2.12b1_Source/lib/replica/example/job1.conf
NAMD_2.12b1_Source/lib/replica/example/alanin.psf
NAMD_2.12b1_Source/lib/replica/example/fold_alanin.conf
NAMD_2.12b1_Source/lib/replica/example/alanin_base.namd
NAMD_2.12b1_Source/lib/replica/example/alanin.params
NAMD_2.12b1_Source/lib/replica/example/CVS/
NAMD_2.12b1_Source/lib/replica/example/CVS/Tag
NAMD_2.12b1_Source/lib/replica/example/CVS/Entries
NAMD_2.12b1_Source/lib/replica/example/CVS/Repository
NAMD_2.12b1_Source/lib/replica/example/CVS/Root
NAMD_2.12b1_Source/lib/replica/make_output_dirs.sh
NAMD_2.12b1_Source/lib/replica/replica.namd
NAMD_2.12b1_Source/lib/replica/CVS/
NAMD_2.12b1_Source/lib/replica/CVS/Root
NAMD_2.12b1_Source/lib/replica/CVS/Entries
NAMD_2.12b1_Source/lib/replica/CVS/Repository
NAMD_2.12b1_Source/lib/replica/CVS/Tag
NAMD_2.12b1_Source/lib/replica/umbrella/
NAMD_2.12b1_Source/lib/replica/umbrella/input/
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.5.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.2.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.11.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.12.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.6.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.10.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.2.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.3.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.4.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.10.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.7.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.13.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.3.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.3.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/CVS/
NAMD_2.12b1_Source/lib/replica/umbrella/input/CVS/Root
NAMD_2.12b1_Source/lib/replica/umbrella/input/CVS/Tag
NAMD_2.12b1_Source/lib/replica/umbrella/input/CVS/Repository
NAMD_2.12b1_Source/lib/replica/umbrella/input/CVS/Entries
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.4.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.5.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.2.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.11.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.1.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.6.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.11.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.5.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.8.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.12.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.15.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.1.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.15.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.14.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.13.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.7.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.0.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.9.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.9.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.14.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.13.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.9.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.7.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.8.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.0.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.8.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.4.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.10.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.1.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.6.vel
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.0.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.14.coor
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.12.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/input/alanin.initial.15.xsc
NAMD_2.12b1_Source/lib/replica/umbrella/stretch_alanin.conf
NAMD_2.12b1_Source/lib/replica/umbrella/job1.conf
NAMD_2.12b1_Source/lib/replica/umbrella/mplexjob1.conf
NAMD_2.12b1_Source/lib/replica/umbrella/alanin.params
NAMD_2.12b1_Source/lib/replica/umbrella/job0.conf
NAMD_2.12b1_Source/lib/replica/umbrella/mplexjob0.conf
NAMD_2.12b1_Source/lib/replica/umbrella/CVS/
NAMD_2.12b1_Source/lib/replica/umbrella/CVS/Root
NAMD_2.12b1_Source/lib/replica/umbrella/CVS/Tag
NAMD_2.12b1_Source/lib/replica/umbrella/CVS/Repository
NAMD_2.12b1_Source/lib/replica/umbrella/CVS/Entries
NAMD_2.12b1_Source/lib/replica/umbrella/colvars.conf
NAMD_2.12b1_Source/lib/replica/umbrella/alanin_base.namd
NAMD_2.12b1_Source/lib/replica/umbrella/alanin.pdb
NAMD_2.12b1_Source/lib/replica/umbrella/alanin.psf
NAMD_2.12b1_Source/lib/replica/umbrella_mplex.namd
NAMD_2.12b1_Source/lib/replica/replica_util.namd
NAMD_2.12b1_Source/lib/replica/clone_reps.vmd
NAMD_2.12b1_Source/lib/replica/README.txt
NAMD_2.12b1_Source/lib/replica/show_replicas.vmd
NAMD_2.12b1_Source/lib/replica/multiplex.namd
NAMD_2.12b1_Source/lib/CVS/
NAMD_2.12b1_Source/lib/CVS/Repository
NAMD_2.12b1_Source/lib/CVS/Tag
NAMD_2.12b1_Source/lib/CVS/Root
NAMD_2.12b1_Source/lib/CVS/Entries
NAMD_2.12b1_Source/lib/eabf/
NAMD_2.12b1_Source/lib/eabf/eabf.tcl
NAMD_2.12b1_Source/lib/eabf/CVS/
NAMD_2.12b1_Source/lib/eabf/CVS/Entries
NAMD_2.12b1_Source/lib/eabf/CVS/Root
NAMD_2.12b1_Source/lib/eabf/CVS/Repository
NAMD_2.12b1_Source/lib/eabf/CVS/Tag
NAMD_2.12b1_Source/lib/eabf/example/
NAMD_2.12b1_Source/lib/eabf/example/abf.namd
NAMD_2.12b1_Source/lib/eabf/example/CVS/
NAMD_2.12b1_Source/lib/eabf/example/CVS/Entries
NAMD_2.12b1_Source/lib/eabf/example/CVS/Tag
NAMD_2.12b1_Source/lib/eabf/example/CVS/Root
NAMD_2.12b1_Source/lib/eabf/example/CVS/Repository
NAMD_2.12b1_Source/lib/eabf/example/CH_cgenff.prm
NAMD_2.12b1_Source/lib/eabf/example/CH_final.pdb
NAMD_2.12b1_Source/lib/eabf/example/co.in
NAMD_2.12b1_Source/lib/eabf/example/CH_final.psf
NAMD_2.12b1_Source/Make.depends
NAMD_2.12b1_Source/config
NAMD_2.12b1_Source/notes.txt
NAMD_2.12b1_Source/license.txt
NAMD_2.12b1_Source/cub/
NAMD_2.12b1_Source/cub/CVS/
NAMD_2.12b1_Source/cub/CVS/Root
NAMD_2.12b1_Source/cub/CVS/Tag
NAMD_2.12b1_Source/cub/CVS/Repository
NAMD_2.12b1_Source/cub/CVS/Entries
NAMD_2.12b1_Source/cub/LICENSE.TXT
NAMD_2.12b1_Source/cub/CHANGE_LOG.TXT
NAMD_2.12b1_Source/cub/cub/
NAMD_2.12b1_Source/cub/cub/util_device.cuh
NAMD_2.12b1_Source/cub/cub/util_namespace.cuh
NAMD_2.12b1_Source/cub/cub/util_ptx.cuh
NAMD_2.12b1_Source/cub/cub/util_arch.cuh
NAMD_2.12b1_Source/cub/cub/grid/
NAMD_2.12b1_Source/cub/cub/grid/CVS/
NAMD_2.12b1_Source/cub/cub/grid/CVS/Entries
NAMD_2.12b1_Source/cub/cub/grid/CVS/Tag
NAMD_2.12b1_Source/cub/cub/grid/CVS/Root
NAMD_2.12b1_Source/cub/cub/grid/CVS/Repository
NAMD_2.12b1_Source/cub/cub/grid/grid_mapping.cuh
NAMD_2.12b1_Source/cub/cub/grid/grid_barrier.cuh
NAMD_2.12b1_Source/cub/cub/grid/grid_queue.cuh
NAMD_2.12b1_Source/cub/cub/grid/grid_even_share.cuh
NAMD_2.12b1_Source/cub/cub/warp/
NAMD_2.12b1_Source/cub/cub/warp/specializations/
NAMD_2.12b1_Source/cub/cub/warp/specializations/warp_reduce_smem.cuh
NAMD_2.12b1_Source/cub/cub/warp/specializations/CVS/
NAMD_2.12b1_Source/cub/cub/warp/specializations/CVS/Entries
NAMD_2.12b1_Source/cub/cub/warp/specializations/CVS/Tag
NAMD_2.12b1_Source/cub/cub/warp/specializations/CVS/Repository
NAMD_2.12b1_Source/cub/cub/warp/specializations/CVS/Root
NAMD_2.12b1_Source/cub/cub/warp/specializations/warp_reduce_shfl.cuh
NAMD_2.12b1_Source/cub/cub/warp/specializations/warp_scan_shfl.cuh
NAMD_2.12b1_Source/cub/cub/warp/specializations/warp_scan_smem.cuh
NAMD_2.12b1_Source/cub/cub/warp/CVS/
NAMD_2.12b1_Source/cub/cub/warp/CVS/Root
NAMD_2.12b1_Source/cub/cub/warp/CVS/Repository
NAMD_2.12b1_Source/cub/cub/warp/CVS/Entries
NAMD_2.12b1_Source/cub/cub/warp/CVS/Tag
NAMD_2.12b1_Source/cub/cub/warp/warp_reduce.cuh
NAMD_2.12b1_Source/cub/cub/warp/warp_scan.cuh
NAMD_2.12b1_Source/cub/cub/host/
NAMD_2.12b1_Source/cub/cub/host/CVS/
NAMD_2.12b1_Source/cub/cub/host/CVS/Root
NAMD_2.12b1_Source/cub/cub/host/CVS/Entries
NAMD_2.12b1_Source/cub/cub/host/CVS/Tag
NAMD_2.12b1_Source/cub/cub/host/CVS/Repository
NAMD_2.12b1_Source/cub/cub/host/mutex.cuh
NAMD_2.12b1_Source/cub/cub/util_macro.cuh
NAMD_2.12b1_Source/cub/cub/iterator/
NAMD_2.12b1_Source/cub/cub/iterator/transform_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/CVS/
NAMD_2.12b1_Source/cub/cub/iterator/CVS/Entries
NAMD_2.12b1_Source/cub/cub/iterator/CVS/Repository
NAMD_2.12b1_Source/cub/cub/iterator/CVS/Tag
NAMD_2.12b1_Source/cub/cub/iterator/CVS/Root
NAMD_2.12b1_Source/cub/cub/iterator/counting_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/cache_modified_output_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/constant_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/cache_modified_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/arg_index_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/tex_ref_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/iterator/tex_obj_input_iterator.cuh
NAMD_2.12b1_Source/cub/cub/CVS/
NAMD_2.12b1_Source/cub/cub/CVS/Tag
NAMD_2.12b1_Source/cub/cub/CVS/Root
NAMD_2.12b1_Source/cub/cub/CVS/Repository
NAMD_2.12b1_Source/cub/cub/CVS/Entries
NAMD_2.12b1_Source/cub/cub/cub.cuh
NAMD_2.12b1_Source/cub/cub/util_allocator.cuh
NAMD_2.12b1_Source/cub/cub/util_debug.cuh
NAMD_2.12b1_Source/cub/cub/block/
NAMD_2.12b1_Source/cub/cub/block/block_scan.cuh
NAMD_2.12b1_Source/cub/cub/block/block_store.cuh
NAMD_2.12b1_Source/cub/cub/block/block_reduce.cuh
NAMD_2.12b1_Source/cub/cub/block/block_reduce_by_key.cuh
NAMD_2.12b1_Source/cub/cub/block/block_load.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/
NAMD_2.12b1_Source/cub/cub/block/specializations/block_scan_raking.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_histogram_sort.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_reduce_warp_reductions.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_histogram_atomic.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_reduce_raking_commutative_only.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_reduce_raking.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/block_scan_warp_scans.cuh
NAMD_2.12b1_Source/cub/cub/block/specializations/CVS/
NAMD_2.12b1_Source/cub/cub/block/specializations/CVS/Repository
NAMD_2.12b1_Source/cub/cub/block/specializations/CVS/Root
NAMD_2.12b1_Source/cub/cub/block/specializations/CVS/Entries
NAMD_2.12b1_Source/cub/cub/block/specializations/CVS/Tag
NAMD_2.12b1_Source/cub/cub/block/block_radix_sort.cuh
NAMD_2.12b1_Source/cub/cub/block/block_radix_rank.cuh
NAMD_2.12b1_Source/cub/cub/block/CVS/
NAMD_2.12b1_Source/cub/cub/block/CVS/Tag
NAMD_2.12b1_Source/cub/cub/block/CVS/Entries
NAMD_2.12b1_Source/cub/cub/block/CVS/Root
NAMD_2.12b1_Source/cub/cub/block/CVS/Repository
NAMD_2.12b1_Source/cub/cub/block/block_shuffle.cuh
NAMD_2.12b1_Source/cub/cub/block/block_histogram.cuh
NAMD_2.12b1_Source/cub/cub/block/block_raking_layout.cuh
NAMD_2.12b1_Source/cub/cub/block/block_exchange.cuh
NAMD_2.12b1_Source/cub/cub/block/block_discontinuity.cuh
NAMD_2.12b1_Source/cub/cub/agent/
NAMD_2.12b1_Source/cub/cub/agent/agent_reduce.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_reduce_by_key.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_radix_sort_upsweep.cuh
NAMD_2.12b1_Source/cub/cub/agent/single_pass_scan_operators.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_spmv_csrt.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_spmv_row_based.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_spmv_orig.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_radix_sort_downsweep.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_scan.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_rle.cuh
NAMD_2.12b1_Source/cub/cub/agent/CVS/
NAMD_2.12b1_Source/cub/cub/agent/CVS/Root
NAMD_2.12b1_Source/cub/cub/agent/CVS/Tag
NAMD_2.12b1_Source/cub/cub/agent/CVS/Entries
NAMD_2.12b1_Source/cub/cub/agent/CVS/Repository
NAMD_2.12b1_Source/cub/cub/agent/agent_histogram.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_segment_fixup.cuh
NAMD_2.12b1_Source/cub/cub/agent/agent_select_if.cuh
NAMD_2.12b1_Source/cub/cub/thread/
NAMD_2.12b1_Source/cub/cub/thread/thread_reduce.cuh
NAMD_2.12b1_Source/cub/cub/thread/CVS/
NAMD_2.12b1_Source/cub/cub/thread/CVS/Entries
NAMD_2.12b1_Source/cub/cub/thread/CVS/Repository
NAMD_2.12b1_Source/cub/cub/thread/CVS/Root
NAMD_2.12b1_Source/cub/cub/thread/CVS/Tag
NAMD_2.12b1_Source/cub/cub/thread/thread_store.cuh
NAMD_2.12b1_Source/cub/cub/thread/thread_operators.cuh
NAMD_2.12b1_Source/cub/cub/thread/thread_scan.cuh
NAMD_2.12b1_Source/cub/cub/thread/thread_search.cuh
NAMD_2.12b1_Source/cub/cub/thread/thread_load.cuh
NAMD_2.12b1_Source/cub/cub/device/
NAMD_2.12b1_Source/cub/cub/device/device_histogram.cuh
NAMD_2.12b1_Source/cub/cub/device/device_run_length_encode.cuh
NAMD_2.12b1_Source/cub/cub/device/device_partition.cuh
NAMD_2.12b1_Source/cub/cub/device/device_select.cuh
NAMD_2.12b1_Source/cub/cub/device/device_spmv.cuh
NAMD_2.12b1_Source/cub/cub/device/CVS/
NAMD_2.12b1_Source/cub/cub/device/CVS/Root
NAMD_2.12b1_Source/cub/cub/device/CVS/Tag
NAMD_2.12b1_Source/cub/cub/device/CVS/Entries
NAMD_2.12b1_Source/cub/cub/device/CVS/Repository
NAMD_2.12b1_Source/cub/cub/device/device_scan.cuh
NAMD_2.12b1_Source/cub/cub/device/device_radix_sort.cuh
NAMD_2.12b1_Source/cub/cub/device/device_segmented_reduce.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_rle.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_spmv_row_based.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_reduce.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_histogram.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_select_if.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_spmv_orig.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_spmv_csrt.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_radix_sort.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/CVS/
NAMD_2.12b1_Source/cub/cub/device/dispatch/CVS/Entries
NAMD_2.12b1_Source/cub/cub/device/dispatch/CVS/Repository
NAMD_2.12b1_Source/cub/cub/device/dispatch/CVS/Tag
NAMD_2.12b1_Source/cub/cub/device/dispatch/CVS/Root
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_scan.cuh
NAMD_2.12b1_Source/cub/cub/device/dispatch/dispatch_reduce_by_key.cuh
NAMD_2.12b1_Source/cub/cub/device/device_reduce.cuh
NAMD_2.12b1_Source/cub/cub/device/device_segmented_radix_sort.cuh
NAMD_2.12b1_Source/cub/cub/util_type.cuh
NAMD_2.12b1_Source/README.txt
NAMD_2.12b1_Source/arch/
NAMD_2.12b1_Source/arch/Win32.base
NAMD_2.12b1_Source/arch/MacOSX-x86-clang.arch
NAMD_2.12b1_Source/arch/Win64.fftw
NAMD_2.12b1_Source/arch/Cygwin-MPI-mingw.arch
NAMD_2.12b1_Source/arch/BlueGeneL-MPI-xlC.arch
NAMD_2.12b1_Source/arch/Linux-ARM64.tcl
NAMD_2.12b1_Source/arch/Solaris-x86_64.tcl
NAMD_2.12b1_Source/arch/CRAY-XT.base
NAMD_2.12b1_Source/arch/Linux-KNL.tcl
NAMD_2.12b1_Source/arch/MacOSX-x86_64-clang.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.tcl
NAMD_2.12b1_Source/arch/Linux-ARM64.fftw
NAMD_2.12b1_Source/arch/CRAY-XT3.tcl
NAMD_2.12b1_Source/arch/Linux-mips64.fftw
NAMD_2.12b1_Source/arch/Linux-ARM64-g++.arch
NAMD_2.12b1_Source/arch/Linux-PPC-MX-xlc.arch
NAMD_2.12b1_Source/arch/Cygwin.fftw
NAMD_2.12b1_Source/arch/BlueGeneQ-xlC.arch
NAMD_2.12b1_Source/arch/CRAY-XT3.base
NAMD_2.12b1_Source/arch/CRAY-XE.base
NAMD_2.12b1_Source/arch/BlueGeneL.tcl
NAMD_2.12b1_Source/arch/MacOSX-x86_64.tcl
NAMD_2.12b1_Source/arch/MacOSX-x86.tcl
NAMD_2.12b1_Source/arch/Linux-x86-icc.arch
NAMD_2.12b1_Source/arch/MacOSX-x86_64.base
NAMD_2.12b1_Source/arch/CVS/
NAMD_2.12b1_Source/arch/CVS/Repository
NAMD_2.12b1_Source/arch/CVS/Entries
NAMD_2.12b1_Source/arch/CVS/Tag
NAMD_2.12b1_Source/arch/CVS/Root
NAMD_2.12b1_Source/arch/Win64.cuda
NAMD_2.12b1_Source/arch/CRAY-XC-KNL.fftw
NAMD_2.12b1_Source/arch/Linux-Itanium-icc.arch
NAMD_2.12b1_Source/arch/Linux-PPC.fftw
NAMD_2.12b1_Source/arch/Linux-ARM64.cuda
NAMD_2.12b1_Source/arch/Solaris-Sparc.base
NAMD_2.12b1_Source/arch/Linux-POWER-xlC.arch
NAMD_2.12b1_Source/arch/BlueGeneL-g++.arch
NAMD_2.12b1_Source/arch/Solaris-Sparc-g++.arch
NAMD_2.12b1_Source/arch/Linux-POWER.base
NAMD_2.12b1_Source/arch/Linux-x86.tcl
NAMD_2.12b1_Source/arch/CRAY-XC.fftw3
NAMD_2.12b1_Source/arch/BlueGeneP.tcl
NAMD_2.12b1_Source/arch/Solaris-Sparc.tcl
NAMD_2.12b1_Source/arch/CRAY-XC-KNL-intel.arch
NAMD_2.12b1_Source/arch/Linux-KNL-icc.arch
NAMD_2.12b1_Source/arch/Linux-POWER.fftw
NAMD_2.12b1_Source/arch/CRAY-XT.cuda
NAMD_2.12b1_Source/arch/Linux-ARM-g++.arch
NAMD_2.12b1_Source/arch/Solaris-Sparc.fftw
NAMD_2.12b1_Source/arch/Linux-mips64-MPI-pathcc.arch
NAMD_2.12b1_Source/arch/CRAY-XT.fftw3
NAMD_2.12b1_Source/arch/Linux-PPC.base
NAMD_2.12b1_Source/arch/Win32.tcl
NAMD_2.12b1_Source/arch/CRAY-XC-KNL.tcl
NAMD_2.12b1_Source/arch/CRAY-XC-KNL.base
NAMD_2.12b1_Source/arch/Linux-mips64.tcl
NAMD_2.12b1_Source/arch/MacOSX-x86_64.fftw
NAMD_2.12b1_Source/arch/AIX-POWER-xlC.arch
NAMD_2.12b1_Source/arch/Solaris-x86_64-CC.arch
NAMD_2.12b1_Source/arch/CRAY-XE.fftw
NAMD_2.12b1_Source/arch/CRAY-XT3.fftw
NAMD_2.12b1_Source/arch/Cygwin.base
NAMD_2.12b1_Source/arch/Win64.tcl
NAMD_2.12b1_Source/arch/BlueGeneQ.tcl
NAMD_2.12b1_Source/arch/Linux-mips64.base
NAMD_2.12b1_Source/arch/CRAY-XT-pgcc.arch
NAMD_2.12b1_Source/arch/MacOSX-x86-g++.arch
NAMD_2.12b1_Source/arch/Linux-ARM64.base
NAMD_2.12b1_Source/arch/Linux-POWER.cuda
NAMD_2.12b1_Source/arch/BlueGeneP-MPI-g++.arch
NAMD_2.12b1_Source/arch/CRAY-XT.fftw
NAMD_2.12b1_Source/arch/BlueGeneP-xlC.arch
NAMD_2.12b1_Source/arch/CRAY-XC-KNL.fftw3
NAMD_2.12b1_Source/arch/CRAY-XE.cuda
NAMD_2.12b1_Source/arch/CRAY-XT.tcl
NAMD_2.12b1_Source/arch/MacOSX-x86_64.cuda
NAMD_2.12b1_Source/arch/Linux-x86-g++.arch
NAMD_2.12b1_Source/arch/CRAY-XC-intel.arch
NAMD_2.12b1_Source/arch/Linux-POWER.fftw3
NAMD_2.12b1_Source/arch/Win64.base
NAMD_2.12b1_Source/arch/Win32.fftw
NAMD_2.12b1_Source/arch/BlueGeneP-MPI-xlC.arch
NAMD_2.12b1_Source/arch/Linux-KNL.mkl
NAMD_2.12b1_Source/arch/Linux-KNL.fftw3
NAMD_2.12b1_Source/arch/Linux-ARM.base
NAMD_2.12b1_Source/arch/CRAY-XE.tcl
NAMD_2.12b1_Source/arch/CRAY-XE-gnu.arch
NAMD_2.12b1_Source/arch/Linux-mips64-MPI-g++.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.mkl
NAMD_2.12b1_Source/arch/Win64-MSVC.arch
NAMD_2.12b1_Source/arch/AIX-POWER.base
NAMD_2.12b1_Source/arch/CRAY-XC.fftw
NAMD_2.12b1_Source/arch/Linux-POWER.tcl
NAMD_2.12b1_Source/arch/CRAY-XT-g++.arch
NAMD_2.12b1_Source/arch/AIX-POWER.tcl
NAMD_2.12b1_Source/arch/CRAY-XT3.arch
NAMD_2.12b1_Source/arch/Linux-Itanium.fftw
NAMD_2.12b1_Source/arch/BlueGeneQ-MPI-xlC.arch
NAMD_2.12b1_Source/arch/MacOSX-x86_64-g++.arch
NAMD_2.12b1_Source/arch/Linux-PPC.tcl
NAMD_2.12b1_Source/arch/CRAY-XT3-g++.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.fftw
NAMD_2.12b1_Source/arch/Linux-x86_64-g++.arch
NAMD_2.12b1_Source/arch/Solaris-Sparc-CC.arch
NAMD_2.12b1_Source/arch/BlueGeneP-g++.arch
NAMD_2.12b1_Source/arch/CRAY-XE-intel.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.fftw3
NAMD_2.12b1_Source/arch/CRAY-XC.cuda
NAMD_2.12b1_Source/arch/BlueGeneP.fftw
NAMD_2.12b1_Source/arch/BlueGeneQ.base
NAMD_2.12b1_Source/arch/Linux-KNL.fftw
NAMD_2.12b1_Source/arch/Linux-x86.base
NAMD_2.12b1_Source/arch/CRAY-XT-cce.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.cuda
NAMD_2.12b1_Source/arch/Linux-PPC-MX64-xlc64.arch
NAMD_2.12b1_Source/arch/Solaris-x86_64.base
NAMD_2.12b1_Source/arch/BlueGeneL.base
NAMD_2.12b1_Source/arch/MacOSX-x86.base
NAMD_2.12b1_Source/arch/MacOSX-x86.fftw
NAMD_2.12b1_Source/arch/BlueGeneL.fftw
NAMD_2.12b1_Source/arch/Solaris-x86_64.fftw
NAMD_2.12b1_Source/arch/Win32-MSVC.arch
NAMD_2.12b1_Source/arch/Linux-x86_64-icc.arch
NAMD_2.12b1_Source/arch/Linux-x86.fftw
NAMD_2.12b1_Source/arch/Linux-KNL.base
NAMD_2.12b1_Source/arch/BlueGeneQ.fftw
NAMD_2.12b1_Source/arch/Linux-ARM.cuda
NAMD_2.12b1_Source/arch/BlueGeneP.base
NAMD_2.12b1_Source/arch/BlueGeneL-xlC.arch
NAMD_2.12b1_Source/arch/Cygwin.tcl
NAMD_2.12b1_Source/arch/Linux-POWER-g++.arch
NAMD_2.12b1_Source/arch/CRAY-XC.tcl
NAMD_2.12b1_Source/arch/Linux-ARM.tcl
NAMD_2.12b1_Source/arch/Linux-x86_64.base
NAMD_2.12b1_Source/arch/BlueGeneL-MPI-g++.arch
NAMD_2.12b1_Source/arch/Linux-x86_64.mic
NAMD_2.12b1_Source/arch/Linux-Itanium.tcl
NAMD_2.12b1_Source/arch/Cygwin.arch
NAMD_2.12b1_Source/arch/CRAY-XE.fftw3
NAMD_2.12b1_Source/arch/Linux-Itanium.base
NAMD_2.12b1_Source/arch/CRAY-XC.base
NAMD_2.12b1_Source/arch/AIX-POWER.fftw
NAMD_2.12b1_Source/arch/CRAY-XT-craycc.arch
NAMD_2.12b1_Source/arch/Linux-ARM.fftw
NAMD_2.12b1_Source/src/
NAMD_2.12b1_Source/src/TorusLB.h
NAMD_2.12b1_Source/src/colvarbias_abf.h
NAMD_2.12b1_Source/src/MGridforceParams.C
NAMD_2.12b1_Source/src/memusage.h
NAMD_2.12b1_Source/src/NamdState.h
NAMD_2.12b1_Source/src/dumpdcd.c
NAMD_2.12b1_Source/src/BackEnd.h
NAMD_2.12b1_Source/src/ProxyMgr.h
NAMD_2.12b1_Source/src/colvarcomp_rotations.C
NAMD_2.12b1_Source/src/ProxyPatch.C
NAMD_2.12b1_Source/src/PmeRealSpace.C
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernelBase.h
NAMD_2.12b1_Source/src/ComputeNonbondedBase2.h
NAMD_2.12b1_Source/src/RecBisection.h
NAMD_2.12b1_Source/src/fftlib.h
NAMD_2.12b1_Source/src/ComputeExt.C
NAMD_2.12b1_Source/src/ParallelIOMgr.C
NAMD_2.12b1_Source/src/ComputeRestraints.C
NAMD_2.12b1_Source/src/DeviceCUDA.h
NAMD_2.12b1_Source/src/wkfutils.h
NAMD_2.12b1_Source/src/ComputeNonbondedGo.C
NAMD_2.12b1_Source/src/CollectionMaster.C
NAMD_2.12b1_Source/src/parm.h
NAMD_2.12b1_Source/src/fftmap.h
NAMD_2.12b1_Source/src/FreeEnergyVector.h
NAMD_2.12b1_Source/src/colvardeps.C
NAMD_2.12b1_Source/src/HomePatch.C
NAMD_2.12b1_Source/src/PluginIOMgr.h
NAMD_2.12b1_Source/src/colvarbias_alb.C
NAMD_2.12b1_Source/src/Parameters.C
NAMD_2.12b1_Source/src/ComputeMsm.C
NAMD_2.12b1_Source/src/PatchMap.h
NAMD_2.12b1_Source/src/fitrms.C
NAMD_2.12b1_Source/src/msm_shortrng.c
NAMD_2.12b1_Source/src/ComputeTclBC.h
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernelBase2_scalar.h
NAMD_2.12b1_Source/src/DumpBench.C
NAMD_2.12b1_Source/src/ComputeGlobalMsgs.h
NAMD_2.12b1_Source/src/AlgRecBisection.h
NAMD_2.12b1_Source/src/ProcessorPrivate.C
NAMD_2.12b1_Source/src/ComputeHomePatch.C
NAMD_2.12b1_Source/src/ComputePmeCUDAMgr.C
NAMD_2.12b1_Source/src/ComputeGBISser.h
NAMD_2.12b1_Source/src/ComputeNonbondedCUDA.C
NAMD_2.12b1_Source/src/LdbCoordinator.C
NAMD_2.12b1_Source/src/GlobalMasterEasy.C
NAMD_2.12b1_Source/src/CudaComputeNonbondedKernel.h
NAMD_2.12b1_Source/src/PmeSolver.h
NAMD_2.12b1_Source/src/Measure.C
NAMD_2.12b1_Source/src/PDBData.C
NAMD_2.12b1_Source/src/ComputeGridForce.C
NAMD_2.12b1_Source/src/ComputePmeCUDA.h
NAMD_2.12b1_Source/src/TclCommands.h
NAMD_2.12b1_Source/src/ComputeMoa.h
NAMD_2.12b1_Source/src/GromacsTopFile.C
NAMD_2.12b1_Source/src/Matrix4.h
NAMD_2.12b1_Source/src/ComputeDPME.C
NAMD_2.12b1_Source/src/SortedArray.h
NAMD_2.12b1_Source/src/ComputeMap.C
NAMD_2.12b1_Source/src/GridForceGrid.C
NAMD_2.12b1_Source/src/OptPmeRealSpace.h
NAMD_2.12b1_Source/src/elements.h
NAMD_2.12b1_Source/src/ComputePmeCUDAMgr.ci
NAMD_2.12b1_Source/src/Pointer.h
NAMD_2.12b1_Source/src/colvarbias.C
NAMD_2.12b1_Source/src/Patch.C
NAMD_2.12b1_Source/src/ComputeNonbondedTabEnergies.C
NAMD_2.12b1_Source/src/GlobalMasterFreeEnergy.h
NAMD_2.12b1_Source/src/GlobalMasterServer.h
NAMD_2.12b1_Source/src/ComputeConsForceMsgs.C
NAMD_2.12b1_Source/src/PatchMap.inl
NAMD_2.12b1_Source/src/GridForceGrid.inl
NAMD_2.12b1_Source/src/ComputeDihedrals.inl
NAMD_2.12b1_Source/src/ComputeStir.h
NAMD_2.12b1_Source/src/ComputeHomeTuples.h
NAMD_2.12b1_Source/src/PatchMgr.h
NAMD_2.12b1_Source/src/vmdsock.h
NAMD_2.12b1_Source/src/BroadcastMgr.ci
NAMD_2.12b1_Source/src/GlobalMasterTest.h
NAMD_2.12b1_Source/src/colvarcomp_coordnums.C
NAMD_2.12b1_Source/src/ComputeGBIS.inl
NAMD_2.12b1_Source/src/ComputeMsmMsa.C
NAMD_2.12b1_Source/src/Box.h
NAMD_2.12b1_Source/src/ComputeMgr.C
NAMD_2.12b1_Source/src/FreeEnergyParse.C
NAMD_2.12b1_Source/src/imd.h
NAMD_2.12b1_Source/src/ReductionMgr.ci
NAMD_2.12b1_Source/src/ComputeFmmSerial.C
NAMD_2.12b1_Source/src/BroadcastClient.C
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAExcl.C
NAMD_2.12b1_Source/src/ComputeDPMTA.h
NAMD_2.12b1_Source/src/PatchTypes.h
NAMD_2.12b1_Source/src/CudaTileListKernel.cu
NAMD_2.12b1_Source/src/ComputeMsmSerial.h
NAMD_2.12b1_Source/src/AlgNbor.C
NAMD_2.12b1_Source/src/ComputePatch.h
NAMD_2.12b1_Source/src/sortreplicas.c
NAMD_2.12b1_Source/src/ComputeDihedrals.h
NAMD_2.12b1_Source/src/ComputeConsForce.h
NAMD_2.12b1_Source/src/NamdDummyLB.h
NAMD_2.12b1_Source/src/Node.C
NAMD_2.12b1_Source/src/DataExchanger.C
NAMD_2.12b1_Source/src/ComputeSphericalBC.C
NAMD_2.12b1_Source/src/RefineOnly.C
NAMD_2.12b1_Source/src/ComputeMsmSerialMgr.ci
NAMD_2.12b1_Source/src/colvar.h
NAMD_2.12b1_Source/src/strlib.h
NAMD_2.12b1_Source/src/CudaComputeGBISKernel.cu
NAMD_2.12b1_Source/src/NamdCentLB.h
NAMD_2.12b1_Source/src/ComputeMsmMgr.ci
NAMD_2.12b1_Source/src/InfoStream.C
NAMD_2.12b1_Source/src/CudaUtils.C
NAMD_2.12b1_Source/src/colvarmodule.C
NAMD_2.12b1_Source/src/ComputeExt.h
NAMD_2.12b1_Source/src/ParallelIOMgr.h
NAMD_2.12b1_Source/src/DumpBenchParams.h
NAMD_2.12b1_Source/src/fftlib.C
NAMD_2.12b1_Source/src/RecBisection.C
NAMD_2.12b1_Source/src/ComputeNonbondedFEP.C
NAMD_2.12b1_Source/src/CudaPmeSolverUtilKernel.h
NAMD_2.12b1_Source/src/NamdTypes.h
NAMD_2.12b1_Source/src/CollectionMaster.h
NAMD_2.12b1_Source/src/ComputeRestraints.h
NAMD_2.12b1_Source/src/Molecule2.C
NAMD_2.12b1_Source/src/DeviceCUDA.C
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAKernel.cu
NAMD_2.12b1_Source/src/ProxyMgr.C
NAMD_2.12b1_Source/src/BackEnd.C
NAMD_2.12b1_Source/src/NamdState.C
NAMD_2.12b1_Source/src/memusage.C
NAMD_2.12b1_Source/src/TorusLB.C
NAMD_2.12b1_Source/src/colvarbias_abf.C
NAMD_2.12b1_Source/src/MGridforceParams.h
NAMD_2.12b1_Source/src/PmeRealSpace.h
NAMD_2.12b1_Source/src/ComputeMoaMgr.ci
NAMD_2.12b1_Source/src/Debug.h
NAMD_2.12b1_Source/src/UniqueSortedArray.h
NAMD_2.12b1_Source/src/ProxyPatch.h
NAMD_2.12b1_Source/src/ComputeGBISser.C
NAMD_2.12b1_Source/src/LdbCoordinator.h
NAMD_2.12b1_Source/src/ComputeNonbondedCUDA.h
NAMD_2.12b1_Source/src/GlobalMasterEasy.h
NAMD_2.12b1_Source/src/ComputePmeCUDAMgr.h
NAMD_2.12b1_Source/src/eabf.h
NAMD_2.12b1_Source/src/ComputeHomePatch.h
NAMD_2.12b1_Source/src/colvarcomp_protein.C
NAMD_2.12b1_Source/src/ComputeThole.inl
NAMD_2.12b1_Source/src/AlgRecBisection.C
NAMD_2.12b1_Source/src/ComputeGlobalMsgs.C
NAMD_2.12b1_Source/src/ProcessorPrivate.h
NAMD_2.12b1_Source/src/ComputeDPME.h
NAMD_2.12b1_Source/src/ComputeMap.h
NAMD_2.12b1_Source/src/Matrix4.C
NAMD_2.12b1_Source/src/GromacsTopFile.h
NAMD_2.12b1_Source/src/ComputeGridForce.h
NAMD_2.12b1_Source/src/ComputeMoa.C
NAMD_2.12b1_Source/src/TclCommands.C
NAMD_2.12b1_Source/src/ComputePmeCUDA.C
NAMD_2.12b1_Source/src/PmeSolver.C
NAMD_2.12b1_Source/src/PDBData.h
NAMD_2.12b1_Source/src/Measure.h
NAMD_2.12b1_Source/src/colvardeps.h
NAMD_2.12b1_Source/src/ComputeNonbondedSplitting.h
NAMD_2.12b1_Source/src/HomePatch.h
NAMD_2.12b1_Source/src/FreeEnergyVector.C
NAMD_2.12b1_Source/src/loaddcd.c
NAMD_2.12b1_Source/src/NamdCentLB.ci
NAMD_2.12b1_Source/src/parm.C
NAMD_2.12b1_Source/src/DumpBench.h
NAMD_2.12b1_Source/src/CollectionMgr.ci
NAMD_2.12b1_Source/src/ComputeAngles.inl
NAMD_2.12b1_Source/src/MsmMap.h
NAMD_2.12b1_Source/src/ComputeTclBC.C
NAMD_2.12b1_Source/src/fftlib.ci
NAMD_2.12b1_Source/src/erf.C
NAMD_2.12b1_Source/src/fitrms.h
NAMD_2.12b1_Source/src/PatchMap.C
NAMD_2.12b1_Source/src/ComputeGBISCUDAKernel.h
NAMD_2.12b1_Source/src/PluginIOMgr.C
NAMD_2.12b1_Source/src/colvarbias_alb.h
NAMD_2.12b1_Source/src/Parameters.h
NAMD_2.12b1_Source/src/ComputeMsm.h
NAMD_2.12b1_Source/src/CudaTileListKernel.h
NAMD_2.12b1_Source/src/flipbinpdb.c
NAMD_2.12b1_Source/src/GlobalMasterTest.C
NAMD_2.12b1_Source/src/ComputeMsmMsaMgr.ci
NAMD_2.12b1_Source/src/moduleinit.C
NAMD_2.12b1_Source/src/ComputeFmmSerial.h
NAMD_2.12b1_Source/src/BroadcastClient.h
NAMD_2.12b1_Source/src/MsmMacros.h
NAMD_2.12b1_Source/src/mainfunc.C
NAMD_2.12b1_Source/src/ComputeMsmMsa.h
NAMD_2.12b1_Source/src/ComputeMgr.h
NAMD_2.12b1_Source/src/imd.C
NAMD_2.12b1_Source/src/FreeEnergyParse.h
NAMD_2.12b1_Source/src/ComputeExtMgr.ci
NAMD_2.12b1_Source/src/PressureProfile.h
NAMD_2.12b1_Source/src/GlobalMasterFreeEnergy.C
NAMD_2.12b1_Source/src/GlobalMasterServer.C
NAMD_2.12b1_Source/src/PmeSolver.ci
NAMD_2.12b1_Source/src/colvarbias.h
NAMD_2.12b1_Source/src/Patch.h
NAMD_2.12b1_Source/src/CudaPmeSolver.ci
NAMD_2.12b1_Source/src/GridForceGrid.h
NAMD_2.12b1_Source/src/OptPmeRealSpace.C
NAMD_2.12b1_Source/src/PatchMgr.C
NAMD_2.12b1_Source/src/vmdsock.C
NAMD_2.12b1_Source/src/ComputeStir.C
NAMD_2.12b1_Source/src/ComputeConsForceMsgs.h
NAMD_2.12b1_Source/src/strlib.C
NAMD_2.12b1_Source/src/NamdCentLB.C
NAMD_2.12b1_Source/src/Sync.ci
NAMD_2.12b1_Source/src/colvar.C
NAMD_2.12b1_Source/src/ComputeSphericalBC.h
NAMD_2.12b1_Source/src/RefineOnly.h
NAMD_2.12b1_Source/src/msm_setup.c
NAMD_2.12b1_Source/src/ComputeNonbondedInl.h
NAMD_2.12b1_Source/src/alanin.params
NAMD_2.12b1_Source/src/msm.h
NAMD_2.12b1_Source/src/colvarmodule.h
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAExcl.inl
NAMD_2.12b1_Source/src/CudaUtils.h
NAMD_2.12b1_Source/src/InfoStream.h
NAMD_2.12b1_Source/src/FreeEnergyEnums.h
NAMD_2.12b1_Source/src/ComputePatch.C
NAMD_2.12b1_Source/src/OwnerBox.h
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernelBase2_handcode_single.h
NAMD_2.12b1_Source/src/AlgNbor.h
NAMD_2.12b1_Source/src/ComputeMsmSerial.C
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAKernelBase.h
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAExcl.h
NAMD_2.12b1_Source/src/ComputeDPMTA.C
NAMD_2.12b1_Source/src/ComputeSelfTuples.h
NAMD_2.12b1_Source/src/NamdNborLB.ci
NAMD_2.12b1_Source/src/DataExchanger.h
NAMD_2.12b1_Source/src/ReserveArray.h
NAMD_2.12b1_Source/src/ResizeArrayIter.h
NAMD_2.12b1_Source/src/ComputeFmmSerialMgr.ci
NAMD_2.12b1_Source/src/Node.h
NAMD_2.12b1_Source/src/NamdDummyLB.C
NAMD_2.12b1_Source/src/ComputeConsForce.C
NAMD_2.12b1_Source/src/ComputeDihedrals.C
NAMD_2.12b1_Source/src/ResizeArrayPrimIter.h
NAMD_2.12b1_Source/src/FreeEnergyRMgr.C
NAMD_2.12b1_Source/src/colvarscript.h
NAMD_2.12b1_Source/src/GlobalMasterColvars.h
NAMD_2.12b1_Source/src/MathArray.h
NAMD_2.12b1_Source/src/eabf1D.C
NAMD_2.12b1_Source/src/ComputeGBISserMgr.ci
NAMD_2.12b1_Source/src/FreeEnergyLambdMgr.C
NAMD_2.12b1_Source/src/ComputeNonbondedUtil.C
NAMD_2.12b1_Source/src/ComputeHomePatches.h
NAMD_2.12b1_Source/src/colvargrid.h
NAMD_2.12b1_Source/src/OptPme.C
NAMD_2.12b1_Source/src/colvarcomp.h
NAMD_2.12b1_Source/src/Compute.C
NAMD_2.12b1_Source/src/ComputeNonbondedStd.C
NAMD_2.12b1_Source/src/ComputeGBIS.C
NAMD_2.12b1_Source/src/Vector.h
NAMD_2.12b1_Source/src/DeviceCUDAkernel.cu
NAMD_2.12b1_Source/src/SimParameters.C
NAMD_2.12b1_Source/src/ComputePmeMgr.ci
NAMD_2.12b1_Source/src/CudaComputeNonbonded.C
NAMD_2.12b1_Source/src/colvarproxy_namd.h
NAMD_2.12b1_Source/src/AtomMap.h
NAMD_2.12b1_Source/src/CudaPmeSolverUtil.C
NAMD_2.12b1_Source/src/Communicate.h
NAMD_2.12b1_Source/src/structures.h
NAMD_2.12b1_Source/src/colvarbias_restraint.h
NAMD_2.12b1_Source/src/msm_shortrng_sprec.c
NAMD_2.12b1_Source/src/RefineTorusLB.C
NAMD_2.12b1_Source/src/colvarproxy.h
NAMD_2.12b1_Source/src/BroadcastMgr.C
NAMD_2.12b1_Source/src/NamdOneTools.h
NAMD_2.12b1_Source/src/NamdHybridLB.ci
NAMD_2.12b1_Source/src/CudaComputeNonbondedKernel.cu
NAMD_2.12b1_Source/src/main.C
NAMD_2.12b1_Source/src/PDB.h
NAMD_2.12b1_Source/src/fstream_namd.C
NAMD_2.12b1_Source/src/FreeEnergyLambda.C
NAMD_2.12b1_Source/src/colvarvalue.h
NAMD_2.12b1_Source/src/CudaPmeSolverUtilKernel.cu
NAMD_2.12b1_Source/src/AlgSeven.C
NAMD_2.12b1_Source/src/Sequencer.h
NAMD_2.12b1_Source/src/CompressPsf.h
NAMD_2.12b1_Source/src/ComputeGromacsPair.C
NAMD_2.12b1_Source/src/GlobalMasterTcl.C
NAMD_2.12b1_Source/src/ComputeNonbondedPair.h
NAMD_2.12b1_Source/src/MsmTouch.txt
NAMD_2.12b1_Source/src/ComputeCrossterms.h
NAMD_2.12b1_Source/src/pub3dfft.C
NAMD_2.12b1_Source/src/LJTable.h
NAMD_2.12b1_Source/src/FreeEnergyRestrain.C
NAMD_2.12b1_Source/src/msm_defn.h
NAMD_2.12b1_Source/src/Broadcasts.h
NAMD_2.12b1_Source/src/ComputeNonbondedSelf.h
NAMD_2.12b1_Source/src/DataExchanger.ci
NAMD_2.12b1_Source/src/WorkDistrib.C
NAMD_2.12b1_Source/src/Sync.C
NAMD_2.12b1_Source/src/colvaratoms.C
NAMD_2.12b1_Source/src/SortAtoms.h
NAMD_2.12b1_Source/src/colvarbias_meta.C
NAMD_2.12b1_Source/src/ComputeFullDirectBase.h
NAMD_2.12b1_Source/src/OptPme.ci
NAMD_2.12b1_Source/src/ComputeEField.C
NAMD_2.12b1_Source/src/ccsinterface.C
NAMD_2.12b1_Source/src/dcdlib.C
NAMD_2.12b1_Source/src/eabfTcl.C
NAMD_2.12b1_Source/src/ComputePme.h
NAMD_2.12b1_Source/src/heap.h
NAMD_2.12b1_Source/src/ComputeAngles.C
NAMD_2.12b1_Source/src/ComputeCylindricalBC.h
NAMD_2.12b1_Source/src/IMDOutput.C
NAMD_2.12b1_Source/src/ComputeDPMEMsgs.h
NAMD_2.12b1_Source/src/Set.h
NAMD_2.12b1_Source/src/BOCgroup.h
NAMD_2.12b1_Source/src/MStream.h
NAMD_2.12b1_Source/src/dc.pl
NAMD_2.12b1_Source/src/PatchMgr.ci
NAMD_2.12b1_Source/src/SortableResizeArray.h
NAMD_2.12b1_Source/src/NamdHybridLB.C
NAMD_2.12b1_Source/src/ComputeAniso.h
NAMD_2.12b1_Source/src/ComputeLCPO.C
NAMD_2.12b1_Source/src/ComputeCUDAMgr.C
NAMD_2.12b1_Source/src/HomePatchList.h
NAMD_2.12b1_Source/src/ScriptTcl.h
NAMD_2.12b1_Source/src/common.h
NAMD_2.12b1_Source/src/GlobalMasterMisc.C
NAMD_2.12b1_Source/src/ComputeGridForceMgr.ci
NAMD_2.12b1_Source/src/ComputePmeCUDAKernel.h
NAMD_2.12b1_Source/src/eabf2D.C
NAMD_2.12b1_Source/src/MigrateAtomsMsg.C
NAMD_2.12b1_Source/src/ComputeGlobal.h
NAMD_2.12b1_Source/src/alanin.pdb
NAMD_2.12b1_Source/src/Hydrogen.h
NAMD_2.12b1_Source/src/eabffunc.C
NAMD_2.12b1_Source/src/flipdcd.c
NAMD_2.12b1_Source/src/ConfigList.h
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernel.C
NAMD_2.12b1_Source/src/GlobalMaster.C
NAMD_2.12b1_Source/src/Array.h
NAMD_2.12b1_Source/src/GoMolecule.C
NAMD_2.12b1_Source/src/CudaComputeGBISKernel.h
NAMD_2.12b1_Source/src/NamdNborLB.C
NAMD_2.12b1_Source/src/ParseOptions.C
NAMD_2.12b1_Source/src/CollectionMgr.C
NAMD_2.12b1_Source/src/Output.C
NAMD_2.12b1_Source/src/colvartypes.h
NAMD_2.12b1_Source/src/GlobalMasterSymmetry.C
NAMD_2.12b1_Source/src/colvarparse.h
NAMD_2.12b1_Source/src/FreeEnergyAssert.h
NAMD_2.12b1_Source/src/PmeKSpace.C
NAMD_2.12b1_Source/src/GlobalMasterSMD.h
NAMD_2.12b1_Source/src/ResizeArray.h
NAMD_2.12b1_Source/src/ComputeImpropers.h
NAMD_2.12b1_Source/src/ReductionMgr.C
NAMD_2.12b1_Source/src/Molecule.C
NAMD_2.12b1_Source/src/WorkDistrib.ci
NAMD_2.12b1_Source/src/ComputeThole.C
NAMD_2.12b1_Source/src/Lattice.h
NAMD_2.12b1_Source/src/ComputeQM.C
NAMD_2.12b1_Source/src/Thread.h
NAMD_2.12b1_Source/src/ComputeFullDirect.h
NAMD_2.12b1_Source/src/ComputePatchPair.C
NAMD_2.12b1_Source/src/colvarbias_histogram.C
NAMD_2.12b1_Source/src/ComputeBonds.C
NAMD_2.12b1_Source/src/DataStream.C
NAMD_2.12b1_Source/src/GlobalMasterTMD.h
NAMD_2.12b1_Source/src/ComputeNonbondedMIC.h
NAMD_2.12b1_Source/src/FreeEnergyGroup.C
NAMD_2.12b1_Source/src/Settle.h
NAMD_2.12b1_Source/src/msm_longrng.c
NAMD_2.12b1_Source/src/Rebalancer.C
NAMD_2.12b1_Source/src/GlobalMasterIMD.C
NAMD_2.12b1_Source/src/Priorities.h
NAMD_2.12b1_Source/src/CudaPmeSolver.C
NAMD_2.12b1_Source/src/Migration.h
NAMD_2.12b1_Source/src/ComputeAniso.inl
NAMD_2.12b1_Source/src/ComputeEwald.h
NAMD_2.12b1_Source/src/MsmNotes.txt
NAMD_2.12b1_Source/src/Controller.h
NAMD_2.12b1_Source/src/Matrix4Symmetry.h
NAMD_2.12b1_Source/src/wkfutils.c
NAMD_2.12b1_Source/src/msm_longrng_sprec.c
NAMD_2.12b1_Source/src/Random.h
NAMD_2.12b1_Source/src/colvarcomp_distances.C
NAMD_2.12b1_Source/src/NamdDummyLB.ci
NAMD_2.12b1_Source/src/ComputeGromacsPair.inl
NAMD_2.12b1_Source/src/ComputePmeCUDAKernel.cu
NAMD_2.12b1_Source/src/colvarcomp.C
NAMD_2.12b1_Source/src/Compute.h
NAMD_2.12b1_Source/src/diffbinpdb.c
NAMD_2.12b1_Source/src/ComputeMgr.ci
NAMD_2.12b1_Source/src/RefineTorusLB.h
NAMD_2.12b1_Source/src/BroadcastMgr.h
NAMD_2.12b1_Source/src/Communicate.C
NAMD_2.12b1_Source/src/msm.c
NAMD_2.12b1_Source/src/colvarbias_restraint.C
NAMD_2.12b1_Source/src/CudaPmeSolverUtil.h
NAMD_2.12b1_Source/src/AtomMap.C
NAMD_2.12b1_Source/src/SimParameters.h
NAMD_2.12b1_Source/src/CudaComputeNonbonded.h
NAMD_2.12b1_Source/src/colvarproxy_namd.C
NAMD_2.12b1_Source/src/FreeEnergyLambdMgr.h
NAMD_2.12b1_Source/src/packmsg.h
NAMD_2.12b1_Source/src/CollectionMaster.ci
NAMD_2.12b1_Source/src/PmeBase.inl
NAMD_2.12b1_Source/src/eabf1D.h
NAMD_2.12b1_Source/src/FreeEnergyRMgr.h
NAMD_2.12b1_Source/src/colvarscript.C
NAMD_2.12b1_Source/src/OptPme.h
NAMD_2.12b1_Source/src/ComputeCUDAMgr.ci
NAMD_2.12b1_Source/src/colvargrid.C
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernelBase2.h
NAMD_2.12b1_Source/src/ComputeNonbondedUtil.h
NAMD_2.12b1_Source/src/ComputeHomePatches.C
NAMD_2.12b1_Source/src/alanin.psf
NAMD_2.12b1_Source/src/UniqueSet.h
NAMD_2.12b1_Source/src/ccsinterface.h
NAMD_2.12b1_Source/src/ComputeEField.h
NAMD_2.12b1_Source/src/colvaratoms.h
NAMD_2.12b1_Source/src/SortAtoms.C
NAMD_2.12b1_Source/src/colvarbias_meta.h
NAMD_2.12b1_Source/src/Sync.h
NAMD_2.12b1_Source/src/WorkDistrib.h
NAMD_2.12b1_Source/src/FreeEnergyMain.C
NAMD_2.12b1_Source/src/alanin
NAMD_2.12b1_Source/src/Set.C
NAMD_2.12b1_Source/src/ComputeDPMEMsgs.C
NAMD_2.12b1_Source/src/colvarcomp_angles.C
NAMD_2.12b1_Source/src/heap.C
NAMD_2.12b1_Source/src/ComputePme.C
NAMD_2.12b1_Source/src/ComputeCylindricalBC.C
NAMD_2.12b1_Source/src/ProxyMgr.ci
NAMD_2.12b1_Source/src/ComputeAngles.h
NAMD_2.12b1_Source/src/IMDOutput.h
NAMD_2.12b1_Source/src/ParallelIOMgr.ci
NAMD_2.12b1_Source/src/dcdlib.h
NAMD_2.12b1_Source/src/BroadcastObject.h
NAMD_2.12b1_Source/src/colvarvalue.C
NAMD_2.12b1_Source/src/PDB.C
NAMD_2.12b1_Source/src/fstream_namd.h
NAMD_2.12b1_Source/src/FreeEnergyLambda.h
NAMD_2.12b1_Source/src/ComputeNonbondedPProf.C
NAMD_2.12b1_Source/src/ComputeBonds.inl
NAMD_2.12b1_Source/src/NamdOneTools.C
NAMD_2.12b1_Source/src/main.h
NAMD_2.12b1_Source/src/ComputeNonbondedSelf.C
NAMD_2.12b1_Source/src/pub3dfft.h
NAMD_2.12b1_Source/src/LJTable.C
NAMD_2.12b1_Source/src/UniqueSetIter.h
NAMD_2.12b1_Source/src/FreeEnergyRestrain.h
NAMD_2.12b1_Source/src/ComputeNonbondedTI.C
NAMD_2.12b1_Source/src/ComputeCrossterms.C
NAMD_2.12b1_Source/src/Sequencer.C
NAMD_2.12b1_Source/src/CompressPsf.C
NAMD_2.12b1_Source/src/ComputeNonbondedPair.C
NAMD_2.12b1_Source/src/GlobalMasterTcl.h
NAMD_2.12b1_Source/src/ComputeGromacsPair.h
NAMD_2.12b1_Source/src/eabffunc.h
NAMD_2.12b1_Source/src/ConfigList.C
NAMD_2.12b1_Source/src/MoleculeQM.C
NAMD_2.12b1_Source/src/GlobalMaster.h
NAMD_2.12b1_Source/src/ComputeNonbondedMICKernel.h
NAMD_2.12b1_Source/src/Node.ci
NAMD_2.12b1_Source/src/ComputeGlobal.C
NAMD_2.12b1_Source/src/CVS/
NAMD_2.12b1_Source/src/CVS/Repository
NAMD_2.12b1_Source/src/CVS/Tag
NAMD_2.12b1_Source/src/CVS/Root
NAMD_2.12b1_Source/src/CVS/Entries
NAMD_2.12b1_Source/src/ComputeQMMgr.ci
NAMD_2.12b1_Source/src/colvartypes.C
NAMD_2.12b1_Source/src/GlobalMasterSymmetry.h
NAMD_2.12b1_Source/src/CollectionMgr.h
NAMD_2.12b1_Source/src/ParseOptions.h
NAMD_2.12b1_Source/src/Output.h
NAMD_2.12b1_Source/src/NamdNborLB.h
NAMD_2.12b1_Source/src/ComputeCUDAMgr.h
NAMD_2.12b1_Source/src/LdbCoordinator.ci
NAMD_2.12b1_Source/src/ComputeLCPO.h
NAMD_2.12b1_Source/src/ComputeAniso.C
NAMD_2.12b1_Source/src/PmeBase.h
NAMD_2.12b1_Source/src/NamdHybridLB.h
NAMD_2.12b1_Source/src/MStream.C
NAMD_2.12b1_Source/src/MigrateAtomsMsg.h
NAMD_2.12b1_Source/src/eabf2D.h
NAMD_2.12b1_Source/src/largefiles.h
NAMD_2.12b1_Source/src/ComputeNonbondedLES.C
NAMD_2.12b1_Source/src/fixdcd.c
NAMD_2.12b1_Source/src/common.C
NAMD_2.12b1_Source/src/ObjectArena.h
NAMD_2.12b1_Source/src/GlobalMasterMisc.h
NAMD_2.12b1_Source/src/ComputeNonbondedCUDAKernel.h
NAMD_2.12b1_Source/src/ScriptTcl.C
NAMD_2.12b1_Source/src/ResizeArrayRaw.h
NAMD_2.12b1_Source/src/PmeSolverUtil.h
NAMD_2.12b1_Source/src/GlobalMasterIMD.h
NAMD_2.12b1_Source/src/Rebalancer.h
NAMD_2.12b1_Source/src/Tensor.h
NAMD_2.12b1_Source/src/ComputeNonbondedBase.h
NAMD_2.12b1_Source/src/Controller.C
NAMD_2.12b1_Source/src/Matrix4Symmetry.C
NAMD_2.12b1_Source/src/CudaPmeSolver.h
NAMD_2.12b1_Source/src/ComputeEwald.C
NAMD_2.12b1_Source/src/TclVec.C
NAMD_2.12b1_Source/src/ComputeThole.h
NAMD_2.12b1_Source/src/Molecule.h
NAMD_2.12b1_Source/src/ReductionMgr.h
NAMD_2.12b1_Source/src/ComputeImpropers.C
NAMD_2.12b1_Source/src/Alg7.h
NAMD_2.12b1_Source/src/main.ci
NAMD_2.12b1_Source/src/colvarparse.C
NAMD_2.12b1_Source/src/PmeKSpace.h
NAMD_2.12b1_Source/src/FreeEnergyAssert.C
NAMD_2.12b1_Source/src/GlobalMasterSMD.C
NAMD_2.12b1_Source/src/FreeEnergyGroup.h
NAMD_2.12b1_Source/src/ComputeNonbondedMIC.C
NAMD_2.12b1_Source/src/Settle.C
NAMD_2.12b1_Source/src/colvarbias_histogram.h
NAMD_2.12b1_Source/src/varsizemsg.h
NAMD_2.12b1_Source/src/DataStream.h
NAMD_2.12b1_Source/src/ComputeBonds.h
NAMD_2.12b1_Source/src/ComputeNonbondedBase2KNL.h
NAMD_2.12b1_Source/src/GlobalMasterTMD.C
NAMD_2.12b1_Source/src/ComputePatchPair.h
NAMD_2.12b1_Source/src/ComputeQM.h
NAMD_2.12b1_Source/src/ComputeFullDirect.C
NAMD_2.12b1_Source/src/UniqueSetRaw.h
NAMD_2.12b1_Source/Makefile
NAMD_2.12b1_Source/CVS/
NAMD_2.12b1_Source/CVS/Repository
NAMD_2.12b1_Source/CVS/Entries
NAMD_2.12b1_Source/CVS/Tag
NAMD_2.12b1_Source/CVS/Root
NAMD_2.12b1_Source/plugins/
NAMD_2.12b1_Source/plugins/molfile_plugin/
NAMD_2.12b1_Source/plugins/molfile_plugin/src/
NAMD_2.12b1_Source/plugins/molfile_plugin/src/namdbinplugin.c
NAMD_2.12b1_Source/plugins/molfile_plugin/src/CVS/
NAMD_2.12b1_Source/plugins/molfile_plugin/src/CVS/Repository
NAMD_2.12b1_Source/plugins/molfile_plugin/src/CVS/Tag
NAMD_2.12b1_Source/plugins/molfile_plugin/src/CVS/Entries
NAMD_2.12b1_Source/plugins/molfile_plugin/src/CVS/Root
NAMD_2.12b1_Source/plugins/molfile_plugin/src/fortread.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/fastio.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/hash.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/largefiles.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/readpdb.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/jsplugin.c
NAMD_2.12b1_Source/plugins/molfile_plugin/src/pdbplugin.c
NAMD_2.12b1_Source/plugins/molfile_plugin/src/periodic_table.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/psfplugin.c
NAMD_2.12b1_Source/plugins/molfile_plugin/src/endianswap.h
NAMD_2.12b1_Source/plugins/molfile_plugin/src/hash.c
NAMD_2.12b1_Source/plugins/molfile_plugin/src/dcdplugin.c
NAMD_2.12b1_Source/plugins/molfile_plugin/CVS/
NAMD_2.12b1_Source/plugins/molfile_plugin/CVS/Entries
NAMD_2.12b1_Source/plugins/molfile_plugin/CVS/Repository
NAMD_2.12b1_Source/plugins/molfile_plugin/CVS/Tag
NAMD_2.12b1_Source/plugins/molfile_plugin/CVS/Root
NAMD_2.12b1_Source/plugins/CVS/
NAMD_2.12b1_Source/plugins/CVS/Entries
NAMD_2.12b1_Source/plugins/CVS/Root
NAMD_2.12b1_Source/plugins/CVS/Tag
NAMD_2.12b1_Source/plugins/CVS/Repository
NAMD_2.12b1_Source/plugins/import_tree
NAMD_2.12b1_Source/plugins/include/
NAMD_2.12b1_Source/plugins/include/libmolfile_plugin.h
NAMD_2.12b1_Source/plugins/include/vmdplugin.h
NAMD_2.12b1_Source/plugins/include/molfile_plugin.h
NAMD_2.12b1_Source/plugins/include/CVS/
NAMD_2.12b1_Source/plugins/include/CVS/Repository
NAMD_2.12b1_Source/plugins/include/CVS/Entries
NAMD_2.12b1_Source/plugins/include/CVS/Root
NAMD_2.12b1_Source/plugins/include/CVS/Tag
NAMD_2.12b1_Source/psfgen/
NAMD_2.12b1_Source/psfgen/doc/
NAMD_2.12b1_Source/psfgen/doc/CVS/
NAMD_2.12b1_Source/psfgen/doc/CVS/Entries
NAMD_2.12b1_Source/psfgen/doc/CVS/Tag
NAMD_2.12b1_Source/psfgen/doc/CVS/Root
NAMD_2.12b1_Source/psfgen/doc/CVS/Repository
NAMD_2.12b1_Source/psfgen/doc/ug.tex
NAMD_2.12b1_Source/psfgen/doc/ug_macros.tex
NAMD_2.12b1_Source/psfgen/doc/psfgenflowchart.png
NAMD_2.12b1_Source/psfgen/doc/ug_title.tex
NAMD_2.12b1_Source/psfgen/doc/ug_psfgen.tex
NAMD_2.12b1_Source/psfgen/scripts/
NAMD_2.12b1_Source/psfgen/scripts/minimize.tcl
NAMD_2.12b1_Source/psfgen/scripts/template.conf
NAMD_2.12b1_Source/psfgen/scripts/CVS/
NAMD_2.12b1_Source/psfgen/scripts/CVS/Entries
NAMD_2.12b1_Source/psfgen/scripts/CVS/Root
NAMD_2.12b1_Source/psfgen/scripts/CVS/Tag
NAMD_2.12b1_Source/psfgen/scripts/CVS/Repository
NAMD_2.12b1_Source/psfgen/scripts/buildmin.tcl
NAMD_2.12b1_Source/psfgen/scripts/build.tcl
NAMD_2.12b1_Source/psfgen/CVS/
NAMD_2.12b1_Source/psfgen/CVS/Root
NAMD_2.12b1_Source/psfgen/CVS/Entries
NAMD_2.12b1_Source/psfgen/CVS/Tag
NAMD_2.12b1_Source/psfgen/CVS/Repository
NAMD_2.12b1_Source/psfgen/import_tree
NAMD_2.12b1_Source/psfgen/src/
NAMD_2.12b1_Source/psfgen/src/memarena.c
NAMD_2.12b1_Source/psfgen/src/tcl_psfgen.c
NAMD_2.12b1_Source/psfgen/src/topo_mol.c
NAMD_2.12b1_Source/psfgen/src/psf_file.c
NAMD_2.12b1_Source/psfgen/src/CVS/
NAMD_2.12b1_Source/psfgen/src/CVS/Entries
NAMD_2.12b1_Source/psfgen/src/CVS/Repository
NAMD_2.12b1_Source/psfgen/src/CVS/Root
NAMD_2.12b1_Source/psfgen/src/CVS/Tag
NAMD_2.12b1_Source/psfgen/src/charmm_file.c
NAMD_2.12b1_Source/psfgen/src/stringhash.c
NAMD_2.12b1_Source/psfgen/src/topo_mol_pluginio.h
NAMD_2.12b1_Source/psfgen/src/topo_mol_output.c
NAMD_2.12b1_Source/psfgen/src/psfgen.h
NAMD_2.12b1_Source/psfgen/src/hasharray.c
NAMD_2.12b1_Source/psfgen/src/pdb_file.h
NAMD_2.12b1_Source/psfgen/src/topo_defs.h
NAMD_2.12b1_Source/psfgen/src/extract_alias.c
NAMD_2.12b1_Source/psfgen/src/psf_file_extract.h
NAMD_2.12b1_Source/psfgen/src/charmm_parse_topo_defs.c
NAMD_2.12b1_Source/psfgen/src/pdb_file_extract.h
NAMD_2.12b1_Source/psfgen/src/hash.c
NAMD_2.12b1_Source/psfgen/src/topo_mol_pluginio.c
NAMD_2.12b1_Source/psfgen/src/topo_mol_output.h
NAMD_2.12b1_Source/psfgen/src/charmm_file.h
NAMD_2.12b1_Source/psfgen/src/stringhash.h
NAMD_2.12b1_Source/psfgen/src/topo_mol.h
NAMD_2.12b1_Source/psfgen/src/psf_file.h
NAMD_2.12b1_Source/psfgen/src/topo_mol_struct.h
NAMD_2.12b1_Source/psfgen/src/memarena.h
NAMD_2.12b1_Source/psfgen/src/psf_file_extract.c
NAMD_2.12b1_Source/psfgen/src/charmm_parse_topo_defs.h
NAMD_2.12b1_Source/psfgen/src/topo_defs_struct.h
NAMD_2.12b1_Source/psfgen/src/pdb_file_extract.c
NAMD_2.12b1_Source/psfgen/src/hash.h
NAMD_2.12b1_Source/psfgen/src/tcl_main.c
NAMD_2.12b1_Source/psfgen/src/topo_defs.c
NAMD_2.12b1_Source/psfgen/src/extract_alias.h
NAMD_2.12b1_Source/psfgen/src/hasharray.h
NAMD_2.12b1_Source/psfgen/src/pdb_file.c
NAMD_2.12b1_Source/Make.charm
NAMD_2.12b1_Source/ug/
NAMD_2.12b1_Source/ug/ug_accel.tex
NAMD_2.12b1_Source/ug/ug_abf.tex
NAMD_2.12b1_Source/ug/ug_sample.tex
NAMD_2.12b1_Source/ug/ug_xplor.tex
NAMD_2.12b1_Source/ug/ug_colvars.tex
NAMD_2.12b1_Source/ug/ug_analysis.tex
NAMD_2.12b1_Source/ug/ug_eabf.tex
NAMD_2.12b1_Source/ug/namd_title.tex
NAMD_2.12b1_Source/ug/ug_fenergy.tex
NAMD_2.12b1_Source/ug/ug_avail.tex
NAMD_2.12b1_Source/ug/namd_begindoc.tex
NAMD_2.12b1_Source/ug/ug_userdef.tex
NAMD_2.12b1_Source/ug/ug_performance.tex
NAMD_2.12b1_Source/ug/ug_go.tex
NAMD_2.12b1_Source/ug/ug_colvars-cv.tex
NAMD_2.12b1_Source/ug/ug.bib
NAMD_2.12b1_Source/ug/ug_intro.tex
NAMD_2.12b1_Source/ug/ug_forcefield.tex
NAMD_2.12b1_Source/ug/namd_macros.tex
NAMD_2.12b1_Source/ug/ug_start.tex
NAMD_2.12b1_Source/ug/colvars-cv.tex
NAMD_2.12b1_Source/ug/ug_runit.tex
NAMD_2.12b1_Source/ug/ug.tex
NAMD_2.12b1_Source/ug/CVS/
NAMD_2.12b1_Source/ug/CVS/Entries
NAMD_2.12b1_Source/ug/CVS/Root
NAMD_2.12b1_Source/ug/CVS/Repository
NAMD_2.12b1_Source/ug/CVS/Tag
NAMD_2.12b1_Source/ug/ug_alchemy.tex
NAMD_2.12b1_Source/ug/ug_io.tex
NAMD_2.12b1_Source/ug/ug_colvars_macros.tex
NAMD_2.12b1_Source/ug/Makefile
NAMD_2.12b1_Source/ug/fep.bib
NAMD_2.12b1_Source/ug/namd_copyright.tex
NAMD_2.12b1_Source/ug/figures/
NAMD_2.12b1_Source/ug/figures/colvars_diagram.ps
NAMD_2.12b1_Source/ug/figures/switching.eps
NAMD_2.12b1_Source/ug/figures/overlap3.pdf
NAMD_2.12b1_Source/ug/figures/softcore_lambda.png
NAMD_2.12b1_Source/ug/figures/overlap_dens3.pdf
NAMD_2.12b1_Source/ug/figures/softcore_lambda.pdf
NAMD_2.12b1_Source/ug/figures/amd_schematic.jpg
NAMD_2.12b1_Source/ug/figures/overlap2.pdf
NAMD_2.12b1_Source/ug/figures/switching.pdf
NAMD_2.12b1_Source/ug/figures/CVS/
NAMD_2.12b1_Source/ug/figures/CVS/Repository
NAMD_2.12b1_Source/ug/figures/CVS/Entries
NAMD_2.12b1_Source/ug/figures/CVS/Root
NAMD_2.12b1_Source/ug/figures/CVS/Tag
NAMD_2.12b1_Source/ug/figures/overlap_dens2.pdf
NAMD_2.12b1_Source/ug/figures/dual_top.pdf
NAMD_2.12b1_Source/ug/figures/overlap3.ps
NAMD_2.12b1_Source/ug/figures/overlap2.ps
NAMD_2.12b1_Source/ug/figures/TI.eps
NAMD_2.12b1_Source/ug/figures/colvars_diagram.pdf
NAMD_2.12b1_Source/ug/figures/gridshift.pdf
NAMD_2.12b1_Source/ug/figures/overlap_dens1.pdf
NAMD_2.12b1_Source/ug/figures/shifting.pdf
NAMD_2.12b1_Source/ug/figures/overlap1.pdf
NAMD_2.12b1_Source/ug/figures/fmaOn.pdf
NAMD_2.12b1_Source/ug/figures/overlap1.ps
NAMD_2.12b1_Source/ug/figures/pairlistdist.pdf
NAMD_2.12b1_Source/ug/figures/dual_top.eps
NAMD_2.12b1_Source/ug/figures/TI.pdf
NAMD_2.12b1_Source/ug/figures/colvars_diagram.eps
NAMD_2.12b1_Source/ug/figures/gridshift.eps
NAMD_2.12b1_Source/ug/figures/shifting.eps
NAMD_2.12b1_Source/ug/figures/fmaOn.eps
NAMD_2.12b1_Source/ug/figures/pairlistdist.eps
NAMD_2.12b1_Source/ug/.latex2html-init
NAMD_2.12b1_Source/ug/ug_dynamics.tex
NAMD_2.12b1_Source/ug/ug_eabf.bib
NAMD_2.12b1_Source/ug/ug_colvars.bib
NAMD_2.12b1_Source/ug/ug_gbis.tex
NAMD_2.12b1_Source/ug/ug_macros.tex
NAMD_2.12b1_Source/announce.txt
NAMD_2.12b1_Source/charm-6.7.1.tar
/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/namd /mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0
tcl8.5.9-crayxe-threaded/
tcl8.5.9-crayxe-threaded/bin/
tcl8.5.9-crayxe-threaded/bin/tclsh8.5
tcl8.5.9-crayxe-threaded/include/
tcl8.5.9-crayxe-threaded/include/tclTomMath.h
tcl8.5.9-crayxe-threaded/include/tcl.h
tcl8.5.9-crayxe-threaded/include/tclPlatDecls.h
tcl8.5.9-crayxe-threaded/include/tclDecls.h
tcl8.5.9-crayxe-threaded/include/tclTomMathDecls.h
tcl8.5.9-crayxe-threaded/lib/
tcl8.5.9-crayxe-threaded/lib/tcl8/
tcl8.5.9-crayxe-threaded/lib/tcl8/8.5/
tcl8.5.9-crayxe-threaded/lib/tcl8/8.5/tcltest-2.3.2.tm
tcl8.5.9-crayxe-threaded/lib/tcl8/8.5/msgcat-1.4.3.tm
tcl8.5.9-crayxe-threaded/lib/tcl8/8.3/
tcl8.5.9-crayxe-threaded/lib/tcl8/8.4/
tcl8.5.9-crayxe-threaded/lib/tcl8/8.4/platform-1.0.9.tm
tcl8.5.9-crayxe-threaded/lib/tcl8/8.4/platform/
tcl8.5.9-crayxe-threaded/lib/tcl8/8.4/platform/shell-1.1.4.tm
tcl8.5.9-crayxe-threaded/lib/tcl8/8.4/http-2.7.5.tm
tcl8.5.9-crayxe-threaded/lib/tclConfig.sh
tcl8.5.9-crayxe-threaded/lib/libtclstub8.5.a
tcl8.5.9-crayxe-threaded/lib/tcl8.5/
tcl8.5.9-crayxe-threaded/lib/tcl8.5/tclIndex
tcl8.5.9-crayxe-threaded/lib/tcl8.5/http1.0/
tcl8.5.9-crayxe-threaded/lib/tcl8.5/http1.0/http.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/http1.0/pkgIndex.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/tm.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/opt0.4/
tcl8.5.9-crayxe-threaded/lib/tcl8.5/opt0.4/pkgIndex.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/opt0.4/optparse.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/package.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/parray.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/tclAppInit.c
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/ksc5601.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp862.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macCentEuro.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macCyrillic.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/jis0212.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp852.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/gb12345.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-15.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-10.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/ebcdic.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp860.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/euc-cn.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/euc-kr.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/koi8-u.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp932.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-6.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macRoman.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp865.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/ascii.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macJapan.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp949.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp863.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp737.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macGreek.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1256.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macTurkish.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-3.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/tis-620.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp869.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1258.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-7.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1250.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macCroatian.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macThai.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macRomania.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/gb1988.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-16.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp437.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp866.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp864.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1251.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp855.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-1.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-9.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/big5.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso2022-kr.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp857.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/shiftjis.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp950.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/symbol.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/dingbats.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/koi8-r.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-5.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso2022.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso2022-jp.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp874.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp850.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-4.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-8.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1252.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/gb2312-raw.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1254.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/gb2312.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/jis0208.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-13.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1253.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macUkraine.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp775.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1257.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macIceland.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-2.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/euc-jp.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/jis0201.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp936.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/iso8859-14.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp1255.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/cp861.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/encoding/macDingbats.enc
tcl8.5.9-crayxe-threaded/lib/tcl8.5/clock.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/init.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_ar.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/it_ch.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_pr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ca.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/da.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_gb.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/zh_cn.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_zw.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/mr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fo.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ja.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/af.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_cr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ar_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/et.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/tr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fr_ca.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_py.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_hk.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_co.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kok.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/he.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ar_jo.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/eu_es.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/th.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/uk.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_bo.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_sg.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kl_gl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/pl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fr_ch.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/gl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_cl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sk.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_ec.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_ph.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/mt.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/hi_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/mk.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fo_fo.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ta_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ga_ie.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ar_lb.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_gt.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_za.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/bn_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/be.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/nl_be.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_ie.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/eu.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kw_gb.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/hi.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_hn.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/el.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_ni.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fa.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_do.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/hu.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/de.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kok_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ko.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_au.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ar_sy.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/pt_br.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_be.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sh.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/cs.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sv.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/eo.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/zh_tw.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ko_kr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/gl_es.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/id_id.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fi.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fr_be.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/lv.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/pt.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_nz.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_uy.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ro.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/bg.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_pa.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sq.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ru.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/zh.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ga.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_ve.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/nb.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/sw.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_bw.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/zh_sg.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/is.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/lt.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ms.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/zh_hk.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/kw.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/nn.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/gv.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/de_be.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/id.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_mx.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/mr_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/te.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/gv_gb.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/af_za.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_ca.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/en_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fa_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ru_ua.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ar.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ms_my.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/te_in.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/fa_ir.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/de_at.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/ta.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_sv.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/bn.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/vi.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/nl.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/hr.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/es_pe.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/msgs/it.msg
tcl8.5.9-crayxe-threaded/lib/tcl8.5/safe.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/history.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/word.tcl
tcl8.5.9-crayxe-threaded/lib/tcl8.5/auto.tcl
tcl8.5.9-crayxe-threaded/lib/libtcl8.5.a
tcl8.5.9-crayxe-threaded/man/
tcl8.5.9-crayxe-threaded/man/mann/
tcl8.5.9-crayxe-threaded/man/mann/exit.n
tcl8.5.9-crayxe-threaded/man/mann/apply.n
tcl8.5.9-crayxe-threaded/man/mann/trace.n
tcl8.5.9-crayxe-threaded/man/mann/tell.n
tcl8.5.9-crayxe-threaded/man/mann/lindex.n
tcl8.5.9-crayxe-threaded/man/mann/auto_mkindex_old.n
tcl8.5.9-crayxe-threaded/man/mann/return.n
tcl8.5.9-crayxe-threaded/man/mann/chan.n
tcl8.5.9-crayxe-threaded/man/mann/history.n
tcl8.5.9-crayxe-threaded/man/mann/array.n
tcl8.5.9-crayxe-threaded/man/mann/for.n
tcl8.5.9-crayxe-threaded/man/mann/unload.n
tcl8.5.9-crayxe-threaded/man/mann/mathop.n
tcl8.5.9-crayxe-threaded/man/mann/set.n
tcl8.5.9-crayxe-threaded/man/mann/fileevent.n
tcl8.5.9-crayxe-threaded/man/mann/dde.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_wordBreakBefore.n
tcl8.5.9-crayxe-threaded/man/mann/format.n
tcl8.5.9-crayxe-threaded/man/mann/fcopy.n
tcl8.5.9-crayxe-threaded/man/mann/exec.n
tcl8.5.9-crayxe-threaded/man/mann/case.n
tcl8.5.9-crayxe-threaded/man/mann/lreverse.n
tcl8.5.9-crayxe-threaded/man/mann/regexp.n
tcl8.5.9-crayxe-threaded/man/mann/msgcat.n
tcl8.5.9-crayxe-threaded/man/mann/pkg_mkIndex.n
tcl8.5.9-crayxe-threaded/man/mann/if.n
tcl8.5.9-crayxe-threaded/man/mann/auto_execok.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_startOfNextWord.n
tcl8.5.9-crayxe-threaded/man/mann/fblocked.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_startOfPreviousWord.n
tcl8.5.9-crayxe-threaded/man/mann/lsearch.n
tcl8.5.9-crayxe-threaded/man/mann/update.n
tcl8.5.9-crayxe-threaded/man/mann/glob.n
tcl8.5.9-crayxe-threaded/man/mann/variable.n
tcl8.5.9-crayxe-threaded/man/mann/filename.n
tcl8.5.9-crayxe-threaded/man/mann/error.n
tcl8.5.9-crayxe-threaded/man/mann/mathfunc.n
tcl8.5.9-crayxe-threaded/man/mann/unknown.n
tcl8.5.9-crayxe-threaded/man/mann/auto_qualify.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_wordBreakAfter.n
tcl8.5.9-crayxe-threaded/man/mann/namespace.n
tcl8.5.9-crayxe-threaded/man/mann/package.n
tcl8.5.9-crayxe-threaded/man/mann/Tcl.n
tcl8.5.9-crayxe-threaded/man/mann/binary.n
tcl8.5.9-crayxe-threaded/man/mann/global.n
tcl8.5.9-crayxe-threaded/man/mann/lreplace.n
tcl8.5.9-crayxe-threaded/man/mann/subst.n
tcl8.5.9-crayxe-threaded/man/mann/source.n
tcl8.5.9-crayxe-threaded/man/mann/tm.n
tcl8.5.9-crayxe-threaded/man/mann/scan.n
tcl8.5.9-crayxe-threaded/man/mann/append.n
tcl8.5.9-crayxe-threaded/man/mann/expr.n
tcl8.5.9-crayxe-threaded/man/mann/platform::shell.n
tcl8.5.9-crayxe-threaded/man/mann/linsert.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_findLibrary.n
tcl8.5.9-crayxe-threaded/man/mann/regsub.n
tcl8.5.9-crayxe-threaded/man/mann/memory.n
tcl8.5.9-crayxe-threaded/man/mann/flush.n
tcl8.5.9-crayxe-threaded/man/mann/bgerror.n
tcl8.5.9-crayxe-threaded/man/mann/interp.n
tcl8.5.9-crayxe-threaded/man/mann/while.n
tcl8.5.9-crayxe-threaded/man/mann/info.n
tcl8.5.9-crayxe-threaded/man/mann/string.n
tcl8.5.9-crayxe-threaded/man/mann/tcl_endOfWord.n
tcl8.5.9-crayxe-threaded/man/mann/encoding.n
tcl8.5.9-crayxe-threaded/man/mann/seek.n
tcl8.5.9-crayxe-threaded/man/mann/auto_import.n
tcl8.5.9-crayxe-threaded/man/mann/pwd.n
tcl8.5.9-crayxe-threaded/man/mann/re_syntax.n
tcl8.5.9-crayxe-threaded/man/mann/uplevel.n
tcl8.5.9-crayxe-threaded/man/mann/unset.n
tcl8.5.9-crayxe-threaded/man/mann/split.n
tcl8.5.9-crayxe-threaded/man/mann/lset.n
tcl8.5.9-crayxe-threaded/man/mann/join.n
tcl8.5.9-crayxe-threaded/man/mann/tclvars.n
tcl8.5.9-crayxe-threaded/man/mann/lassign.n
tcl8.5.9-crayxe-threaded/man/mann/platform.n
tcl8.5.9-crayxe-threaded/man/mann/vwait.n
tcl8.5.9-crayxe-threaded/man/mann/http.n
tcl8.5.9-crayxe-threaded/man/mann/eval.n
tcl8.5.9-crayxe-threaded/man/mann/refchan.n
tcl8.5.9-crayxe-threaded/man/mann/auto_mkindex.n
tcl8.5.9-crayxe-threaded/man/mann/auto_load.n
tcl8.5.9-crayxe-threaded/man/mann/parray.n
tcl8.5.9-crayxe-threaded/man/mann/close.n
tcl8.5.9-crayxe-threaded/man/mann/puts.n
tcl8.5.9-crayxe-threaded/man/mann/continue.n
tcl8.5.9-crayxe-threaded/man/mann/time.n
tcl8.5.9-crayxe-threaded/man/mann/list.n
tcl8.5.9-crayxe-threaded/man/mann/file.n
tcl8.5.9-crayxe-threaded/man/mann/break.n
tcl8.5.9-crayxe-threaded/man/mann/open.n
tcl8.5.9-crayxe-threaded/man/mann/lrange.n
tcl8.5.9-crayxe-threaded/man/mann/rename.n
tcl8.5.9-crayxe-threaded/man/mann/upvar.n
tcl8.5.9-crayxe-threaded/man/mann/fconfigure.n
tcl8.5.9-crayxe-threaded/man/mann/concat.n
tcl8.5.9-crayxe-threaded/man/mann/dict.n
tcl8.5.9-crayxe-threaded/man/mann/cd.n
tcl8.5.9-crayxe-threaded/man/mann/switch.n
tcl8.5.9-crayxe-threaded/man/mann/pkg::create.n
tcl8.5.9-crayxe-threaded/man/mann/lappend.n
tcl8.5.9-crayxe-threaded/man/mann/tcltest.n
tcl8.5.9-crayxe-threaded/man/mann/clock.n
tcl8.5.9-crayxe-threaded/man/mann/after.n
tcl8.5.9-crayxe-threaded/man/mann/SafeBase.n
tcl8.5.9-crayxe-threaded/man/mann/lsort.n
tcl8.5.9-crayxe-threaded/man/mann/incr.n
tcl8.5.9-crayxe-threaded/man/mann/lrepeat.n
tcl8.5.9-crayxe-threaded/man/mann/eof.n
tcl8.5.9-crayxe-threaded/man/mann/auto_reset.n
tcl8.5.9-crayxe-threaded/man/mann/gets.n
tcl8.5.9-crayxe-threaded/man/mann/llength.n
tcl8.5.9-crayxe-threaded/man/mann/catch.n
tcl8.5.9-crayxe-threaded/man/mann/registry.n
tcl8.5.9-crayxe-threaded/man/mann/read.n
tcl8.5.9-crayxe-threaded/man/mann/load.n
tcl8.5.9-crayxe-threaded/man/mann/proc.n
tcl8.5.9-crayxe-threaded/man/mann/foreach.n
tcl8.5.9-crayxe-threaded/man/mann/pid.n
tcl8.5.9-crayxe-threaded/man/mann/socket.n
tcl8.5.9-crayxe-threaded/man/man1/
tcl8.5.9-crayxe-threaded/man/man1/tclsh.1
tcl8.5.9-crayxe-threaded/man/man3/
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConvertElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetStringFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FreeParse.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelCloseProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjGetElements.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConvertToType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSMountsChanged.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjRemoveKeyList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AddObjErrorInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToLower.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelSeekProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetNormalizedPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SourceRCFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CutChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharToUtf.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprBoolean.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Gets.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FindEnsemble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Release.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateCloseHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelOption.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AddErrorInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetErrno.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSEvalFileEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InterpDeleted.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetTranslatedPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ObjPrintf.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InputBlocked.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetTopChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteEventSource.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TruncateChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalTokensStandard.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEnsembleSubcommandList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendObjToErrorInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AsyncInvoke.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetCommandInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NumUtfChars.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprDoubleObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseVarName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UnsetVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitStubs.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringGetResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendStringsToObjVA.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitMemory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseBraces.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCurrentThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitExceeded.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Ungets.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ThreadQueueEvent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UnsetVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitReady.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelSetOptionProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewIntObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SplitList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FindExecutable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FindHashEntry.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsDigit.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseQuotedString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringStartSublist.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Free.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Backslash.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalObjv.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetMainLoop.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_HideCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SubstObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetObjType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSJoinPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetUniChar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitCustomHashTable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsPrint.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelBufferSize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Finalize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_StandardChannels.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetRange.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendResultVA.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewDoubleObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpMatch.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCommandName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IncrRefCount.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExitThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UntraceCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetVar2Ex.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjAppendList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelHandlerProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ScanElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitSetCommands.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsLower.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelMode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCurrentNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RestoreResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteExitHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_StringCaseMatch.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetAliasObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetEnsembleMappingDict.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FindCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DiscardInterpState.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateHashEntry.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetMaster.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Export.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelTruncateProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSRenameFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCommandFullName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprLongObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WaitPid.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Flush.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ValidateAllMemory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringSetLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Preserve.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UntraceVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CancelIdleCall.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetSystemEncoding.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetReturnOptions.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_JoinPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCommandInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSListVolumes.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteThreadExitHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsShared.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCommandFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetExitProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetMaxBlockTime.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalTokens.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsAlnum.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetBooleanObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringTrunc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateInterp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_VarTraceInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendFormatToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ClearChannelHandlers.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprDouble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitTypeExceeded.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetBignumFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PanicVA.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsGraph.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSCreateDirectory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprLong.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncoding.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSFileAttrsGet.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_StackChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Read.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UpdateLinkedVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelWideSeekProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WinTCharToUtf.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetTranslatedStringPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjPutKeyList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FindNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsChannelRegistered.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConditionFinalize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GlobalEvalObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetServiceMode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetRecursionLimit.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AsyncReady.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ObjSetVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ThreadAlert.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewListObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TraceVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitSetGranularity.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MutexFinalize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegisterChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_StaticPackage.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetPathType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetReturnOptions.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateObjCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSJoinToPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AttemptSetObjLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UnlinkVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetTime.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateObjTrace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetLongObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSAccess.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_VarTraceInfo2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Write.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteTimerHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FirstHashEntry.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetHostName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCwd.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSSplitPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsSpace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSEqualPaths.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_QueueEvent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetObjLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteInterp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsControl.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetEnsembleSubcommandList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetInt.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ReadChars.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Format.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConcatObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetNamespaceUnknownHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetStringObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelVersion.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetHashKey.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSStat.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteEvents.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjDone.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfNext.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetByteArrayLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsChannelExisting.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitTypeReset.3
tcl8.5.9-crayxe-threaded/man/man3/TCL_MEM_DEBUG.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetNamespaceUnknownHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniChar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCharLength.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_OpenCommandChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncodingNames.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgProvideEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSRegister.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelWatchProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ErrnoMsg.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetStdChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharToLower.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharCaseMatch.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendUnicodeToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToExternalDString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteAssocData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PosixError.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateThreadExitHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateEventSource.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MakeTcpClientChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalObjEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsPunct.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSPathSeparator.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConvertCountedElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetStdChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharToUtfDString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AttemptRealloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjReplace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSFileAttrStrings.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_JoinThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetBooleanFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelFlushProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AlertNotifier.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetHashValue.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetObjErrorCode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ObjGetVar2.3
tcl8.5.9-crayxe-threaded/man/man3/ckrealloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelBuffered.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Tell.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitGetCommands.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfPrev.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetDoubleObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsEnsemble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitObjHashTable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MakeSafe.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_BackgroundError.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetStackedChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Eval.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSConvertToPathType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateAliasObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjIndex.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitTypeSet.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetIntObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EvalFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetPanicProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSChdir.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TraceCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringAppend.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExternalToUtf.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitSetTime.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncodingName.3
tcl8.5.9-crayxe-threaded/man/man3/attemptckrealloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetsObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetCwd.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UntraceVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelHandle.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DecrRefCount.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetObjResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsUpper.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfAtIndex.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharNcasecmp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetDoubleFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetErrorCodeVA.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsChannelShared.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendLimitedToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExternalToUtfDString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InvalidateStringRep.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewStringObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Sleep.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetOpenFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSMatchInDirectory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InputBuffered.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringAppendElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateAlias.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetAssocData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewWideIntObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelInstanceData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LinkVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_OutputBuffered.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEnsembleUnknownHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Alloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToUpper.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncodingSearchPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListObjAppendElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitTypeEnabled.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelOutputProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsStandardChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSEvalFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSFileSystemInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToTitle.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SaveResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteHashEntry.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjSize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewDictObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Access.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ListMathFuncs.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEnsembleFlags.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TranslateFileName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetRegExpFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WriteRaw.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSUtime.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharToUpper.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetWideIntObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpExec.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewLongObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitHashTable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEnsembleMappingDict.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetIndexFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetChannelOption.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_OpenTcpServer.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ReapDetachedProcs.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetErrorCode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_OpenFileChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpExecObj.3
tcl8.5.9-crayxe-threaded/man/man3/attemptckalloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSLink.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetVersion.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpCompile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetChannelError.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetNameOfExecutable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendPrintfToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Panic.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetIndexFromObjStruct.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsAlpha.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Merge.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Seek.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CommandComplete.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ServiceEvent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToUniChar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Stat.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_InitNotifier.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ResetResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateSlave.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_QueryTimeProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetMathFuncInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetEnsembleUnknownHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SignalId.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteFileHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgRequireEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NextHashEntry.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetNativePath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteTrace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateChannelHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringFree.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AllowExceptions.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetChannelErrorInterp.3
tcl8.5.9-crayxe-threaded/man/man3/ckalloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConditionNotify.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UnregisterChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetAssocData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetCommandInfoFromToken.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjRemove.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_IsSafe.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Main.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetSlave.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DontCallWhenDeleted.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Close.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringInit.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AttemptAlloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSDeleteFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DoOneEvent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharLen.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DuplicateObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitRemoveHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelBlockModeProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitGetTime.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelErrorInterp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RestoreInterpState.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_VarEval.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegisterConfig.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_OpenTcpClient.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendAllObjTypes.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelThreadActionProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjNext.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AllocStatBuf.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgPresentEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSCopyDirectory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelError.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DetachPids.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetTimeProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSLstat.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewBooleanObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetBoolean.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncodingNameFromEnvironment.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendObjToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSUnregister.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgRequire.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AsyncMark.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfFindFirst.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ConditionWait.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetStringResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewBignumObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Eof.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetUnicode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetUnicodeObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppInit.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendStringsToObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToExternal.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetInterpPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelNamesEx.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetInternalRep.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MutexLock.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharAtIndex.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfFindLast.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfToUniCharDString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateFileHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_BadChannelOption.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteCommandFromToken.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetEnsembleFlags.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Realloc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprString.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitCheck.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PrintDouble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSRemoveDirectory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateExitHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetThreadData.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FreeEncoding.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NotifyChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AsyncCreate.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateTimerHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetObjResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelNames.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SpliceChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetListObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_EventuallyFree.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ScanCountedElement.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RecordAndEval.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DetachChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WinUtfToTChar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetIntFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetDouble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateEncoding.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateMathFunc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TakeBignumFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpMatchObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UnstackChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Init.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegisterObjType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjFirst.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitGetGranularity.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DumpActiveMemory.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetWideIntFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WriteChars.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LimitAddHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_VarEvalVA.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetGlobalNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgPresent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewByteArrayObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ServiceAll.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringValue.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetByteArrayFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DiscardResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetServiceMode.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExposeCommand.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FreeResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetTimer.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SplitPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpGetInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Interp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfCharComplete.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetErrno.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetPathType.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetHashValue.3
tcl8.5.9-crayxe-threaded/man/man3/ckfree.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelName.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharNcmp.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetChannelBufferSize.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteChannelHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ReadRaw.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Exit.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetResult.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateTrace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetEncodingSearchPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetVar2Ex.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MutexUnlock.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharIsWordChar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetDefaultEncodingDir.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetByteArrayObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SaveInterpState.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetChannelThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetLongFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ParseExpr.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ForgetImport.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSFileAttrsSet.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEnsembleNamespace.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PutEnv.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SignalMsg.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_TraceVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_LogCommandInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WrongNumArgs.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetUnicodeFromObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSOpenFileChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RegExpRange.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UpVar2.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Import.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetDefaultEncodingDir.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_RecordAndEvalObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelGetOptionProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_StringMatch.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ExprBooleanObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelClose2Proc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CreateEnsemble.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CallWhenDeleted.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_CommandTraceInfo.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgRequireProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelInputProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_NewUnicodeObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteHashTable.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSGetFileSystemForPath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DoWhenIdle.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_MakeFileChannel.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AppendExportList.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_SetBignumObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UniCharToTitle.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_AsyncDelete.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSNewNativePath.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSCopyFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ChannelGetHandleProc.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FinalizeNotifier.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DeleteCloseHandler.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WaitForEvent.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_WriteObj.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FSLoadFile.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GlobalEval.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_ErrnoId.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjGet.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetCommandInfoFromToken.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DictObjPut.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UpVar.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_UtfBackslash.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_HashStats.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_DStringEndSublist.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Chdir.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_Concat.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetAlias.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_FinalizeThread.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_PkgProvide.3
tcl8.5.9-crayxe-threaded/man/man3/Tcl_GetEncodingFromObj.3
charm-6.7.1/
charm-6.7.1/relink.script
charm-6.7.1/README.bigsim_quick
charm-6.7.1/README.cygwin
charm-6.7.1/README
charm-6.7.1/CHANGES
charm-6.7.1/src/
charm-6.7.1/src/conv-ccs/
charm-6.7.1/src/conv-ccs/ccs-server.h
charm-6.7.1/src/conv-ccs/ccs-builtins.C
charm-6.7.1/src/conv-ccs/ccs-auth.h
charm-6.7.1/src/conv-ccs/ccs-builtins.h
charm-6.7.1/src/conv-ccs/ccs-client.c
charm-6.7.1/src/conv-ccs/conv-ccs.c
charm-6.7.1/src/conv-ccs/ccs-auth.c
charm-6.7.1/src/conv-ccs/middle-ccs.C
charm-6.7.1/src/conv-ccs/ccs-server.c
charm-6.7.1/src/conv-ccs/conv-ccs.h
charm-6.7.1/src/conv-ccs/ccs-client.h
charm-6.7.1/src/conv-core/
charm-6.7.1/src/conv-core/conv-config.h
charm-6.7.1/src/conv-core/debug-conv.c
charm-6.7.1/src/conv-core/memory-paranoid.c
charm-6.7.1/src/conv-core/cpuaffinity.c
charm-6.7.1/src/conv-core/global-macho.C
charm-6.7.1/src/conv-core/conv-cpm.h
charm-6.7.1/src/conv-core/debug-conv++.C
charm-6.7.1/src/conv-core/conv-counter.c
charm-6.7.1/src/conv-core/msgmgr.c
charm-6.7.1/src/conv-core/memory.c
charm-6.7.1/src/conv-core/memory-os-wrapper.C
charm-6.7.1/src/conv-core/mem-arena.c
charm-6.7.1/src/conv-core/msgcallbacks.c
charm-6.7.1/src/conv-core/quiescence.c
charm-6.7.1/src/conv-core/memory-charmdebug.c
charm-6.7.1/src/conv-core/memory-lock.c
charm-6.7.1/src/conv-core/isomalloc.c
charm-6.7.1/src/conv-core/conv-interoperate.c
charm-6.7.1/src/conv-core/conv-qd.h
charm-6.7.1/src/conv-core/conv-onesided.c
charm-6.7.1/src/conv-core/cpthreads.h
charm-6.7.1/src/conv-core/memory-gnu-threads.h
charm-6.7.1/src/conv-core/debug-conv++.h
charm-6.7.1/src/conv-core/converse.h
charm-6.7.1/src/conv-core/memory-isomalloc.c
charm-6.7.1/src/conv-core/memory-gnu.c
charm-6.7.1/src/conv-core/memory-verbose.c
charm-6.7.1/src/conv-core/convcore.c
charm-6.7.1/src/conv-core/cmipool.h
charm-6.7.1/src/conv-core/conv-conds.c
charm-6.7.1/src/conv-core/threads.c
charm-6.7.1/src/conv-core/mem-arena.h
charm-6.7.1/src/conv-core/cpath.c
charm-6.7.1/src/conv-core/quiescence.h
charm-6.7.1/src/conv-core/queueing.C
charm-6.7.1/src/conv-core/cmidirect.h
charm-6.7.1/src/conv-core/global-elfcopy.C
charm-6.7.1/src/conv-core/fmain.f90
charm-6.7.1/src/conv-core/global-nop.c
charm-6.7.1/src/conv-core/cpm.c
charm-6.7.1/src/conv-core/memory-gnu-internal.c
charm-6.7.1/src/conv-core/global-elfgot.C
charm-6.7.1/src/conv-core/cmibacktrace.c
charm-6.7.1/src/conv-core/cputopology.C
charm-6.7.1/src/conv-core/loadsym.c
charm-6.7.1/src/conv-core/debug-conv.h
charm-6.7.1/src/conv-core/memoryaffinity.c
charm-6.7.1/src/conv-core/conv-ooc.h
charm-6.7.1/src/conv-core/queueing.h
charm-6.7.1/src/conv-core/cmidirectmanytomany.h
charm-6.7.1/src/conv-core/persistent.h
charm-6.7.1/src/conv-core/cmipool.c
charm-6.7.1/src/conv-core/conv-random.h
charm-6.7.1/src/conv-core/futures.c
charm-6.7.1/src/conv-core/msgq.h
charm-6.7.1/src/conv-core/conv-onesided.h
charm-6.7.1/src/conv-core/memory-leak.c
charm-6.7.1/src/conv-core/cpthreads.c
charm-6.7.1/src/conv-core/random.c
charm-6.7.1/src/conv-core/memory-isomalloc.h
charm-6.7.1/src/conv-core/conv-trace.h
charm-6.7.1/src/conv-core/conv-cpath.h
charm-6.7.1/src/ck-perf/
charm-6.7.1/src/ck-perf/trace-common.C
charm-6.7.1/src/ck-perf/trace-Tau.h
charm-6.7.1/src/ck-perf/trace-utilization.C
charm-6.7.1/src/ck-perf/tracef_f.f90
charm-6.7.1/src/ck-perf/trace-simple.C
charm-6.7.1/src/ck-perf/trace-memory.C
charm-6.7.1/src/ck-perf/trace-projectionsBOC.h
charm-6.7.1/src/ck-perf/trace-converse.c
charm-6.7.1/src/ck-perf/tracef.C
charm-6.7.1/src/ck-perf/trace-TauBOC.h
charm-6.7.1/src/ck-perf/trace-summary.C
charm-6.7.1/src/ck-perf/trace-projector.h
charm-6.7.1/src/ck-perf/trace-controlPoints.ci
charm-6.7.1/src/ck-perf/trace-common.h
charm-6.7.1/src/ck-perf/trace-utilization.h
charm-6.7.1/src/ck-perf/trace-Tau.C
charm-6.7.1/src/ck-perf/trace-controlPoints-BGP.C
charm-6.7.1/src/ck-perf/trace-simple.ci
charm-6.7.1/src/ck-perf/trace.h
charm-6.7.1/src/ck-perf/trace-simple.h
charm-6.7.1/src/ck-perf/trace-memory.h
charm-6.7.1/src/ck-perf/trace-simpleBOC.h
charm-6.7.1/src/ck-perf/trace-utilization.ci
charm-6.7.1/src/ck-perf/trace-projector.C
charm-6.7.1/src/ck-perf/trace-summaryBOC.h
charm-6.7.1/src/ck-perf/trace-summary.h
charm-6.7.1/src/ck-perf/trace-projections.ci
charm-6.7.1/src/ck-perf/trace-all.C
charm-6.7.1/src/ck-perf/trace-controlPoints.h
charm-6.7.1/src/ck-perf/trace-controlPointsBOC.h
charm-6.7.1/src/ck-perf/tracec.h
charm-6.7.1/src/ck-perf/trace-summary.ci
charm-6.7.1/src/ck-perf/trace-projections.h
charm-6.7.1/src/ck-perf/trace-counter.C
charm-6.7.1/src/ck-perf/trace-bluegene.C
charm-6.7.1/src/ck-perf/trace-controlPoints.C
charm-6.7.1/src/ck-perf/trace-Tau.ci
charm-6.7.1/src/ck-perf/tracec.C
charm-6.7.1/src/ck-perf/trace-bluegene.h
charm-6.7.1/src/ck-perf/trace-projections.C
charm-6.7.1/src/ck-perf/trace-counter.h
charm-6.7.1/src/ck-core/
charm-6.7.1/src/ck-core/ckmarshall.ci
charm-6.7.1/src/ck-core/ckreduction.h
charm-6.7.1/src/ck-core/tempo.h
charm-6.7.1/src/ck-core/ckmessagelogging.C
charm-6.7.1/src/ck-core/ckarrayindex.h
charm-6.7.1/src/ck-core/msgalloc.C
charm-6.7.1/src/ck-core/register.C
charm-6.7.1/src/ck-core/ckevacuation.C
charm-6.7.1/src/ck-core/sdag.C
charm-6.7.1/src/ck-core/ckcheckpoint.C
charm-6.7.1/src/ck-core/ckstream.h
charm-6.7.1/src/ck-core/ckcallback.h
charm-6.7.1/src/ck-core/waitqd.h
charm-6.7.1/src/ck-core/ck.h
charm-6.7.1/src/ck-core/waitqd.ci
charm-6.7.1/src/ck-core/cklocation.C
charm-6.7.1/src/ck-core/ckmessage.h
charm-6.7.1/src/ck-core/debug-charm.h
charm-6.7.1/src/ck-core/ckdirect.h
charm-6.7.1/src/ck-core/ckarrayreductionmgr.C
charm-6.7.1/src/ck-core/ckreduction.ci
charm-6.7.1/src/ck-core/init.C
charm-6.7.1/src/ck-core/ckfutures.h
charm-6.7.1/src/ck-core/middle-conv.h
charm-6.7.1/src/ck-core/ckreduction.C
charm-6.7.1/src/ck-core/ckmessagelogging.h
charm-6.7.1/src/ck-core/charm++.h
charm-6.7.1/src/ck-core/tempo.C
charm-6.7.1/src/ck-core/cksection.h
charm-6.7.1/src/ck-core/sdag.h
charm-6.7.1/src/ck-core/ckfutures.ci
charm-6.7.1/src/ck-core/ckevacuation.h
charm-6.7.1/src/ck-core/ckcheckpoint.h
charm-6.7.1/src/ck-core/ckmigratable.h
charm-6.7.1/src/ck-core/stats.h
charm-6.7.1/src/ck-core/objid.h
charm-6.7.1/src/ck-core/register.h
charm-6.7.1/src/ck-core/charmmod.f90
charm-6.7.1/src/ck-core/cklocation.h
charm-6.7.1/src/ck-core/ckcheckpoint.ci
charm-6.7.1/src/ck-core/debug-charm.C
charm-6.7.1/src/ck-core/envelope.h
charm-6.7.1/src/ck-core/ckmemcheckpoint.ci
charm-6.7.1/src/ck-core/debug-message.C
charm-6.7.1/src/ck-core/ckcallback.C
charm-6.7.1/src/ck-core/waitqd.C
charm-6.7.1/src/ck-core/ck.C
charm-6.7.1/src/ck-core/mpi-mainmodule.C
charm-6.7.1/src/ck-core/ckarrayreductionmgr.h
charm-6.7.1/src/ck-core/ckfutures.C
charm-6.7.1/src/ck-core/init.h
charm-6.7.1/src/ck-core/qd.h
charm-6.7.1/src/ck-core/ckmemcheckpoint.h
charm-6.7.1/src/ck-core/ckobjQ.h
charm-6.7.1/src/ck-core/ckobjid.h
charm-6.7.1/src/ck-core/ckcausalmlog.h
charm-6.7.1/src/ck-core/tempo.ci
charm-6.7.1/src/ck-core/ckarray.ci
charm-6.7.1/src/ck-core/ckIgetControl.h
charm-6.7.1/src/ck-core/ckcallback-ccs.h
charm-6.7.1/src/ck-core/ckarray.C
charm-6.7.1/src/ck-core/main.C
charm-6.7.1/src/ck-core/middle.h
charm-6.7.1/src/ck-core/mpi-interoperate.h
charm-6.7.1/src/ck-core/charmf.h
charm-6.7.1/src/ck-core/cktiming.C
charm-6.7.1/src/ck-core/ckobjQ.C
charm-6.7.1/src/ck-core/ckmemcheckpoint.C
charm-6.7.1/src/ck-core/ckcheckpointstatus.ci
charm-6.7.1/src/ck-core/mpi-mainmodule.ci
charm-6.7.1/src/ck-core/qd.C
charm-6.7.1/src/ck-core/modifyScheduler.C
charm-6.7.1/src/ck-core/middle-blue.h
charm-6.7.1/src/ck-core/ckobjid.C
charm-6.7.1/src/ck-core/cklocation.ci
charm-6.7.1/src/ck-core/charm.h
charm-6.7.1/src/ck-core/cklocrec.h
charm-6.7.1/src/ck-core/ckcausalmlog.C
charm-6.7.1/src/ck-core/ckarray.h
charm-6.7.1/src/ck-core/ckarrayreductionmgr.ci
charm-6.7.1/src/ck-core/envelope-path.h
charm-6.7.1/src/ck-core/charm-api.h
charm-6.7.1/src/ck-core/readonly.h
charm-6.7.1/src/ck-core/ckIgetControl.C
charm-6.7.1/src/ck-core/charmf.C
charm-6.7.1/src/ck-core/cktiming.h
charm-6.7.1/src/ck-core/ckcallback.ci
charm-6.7.1/src/ck-core/mpi-interoperate.C
charm-6.7.1/src/conv-ldb/
charm-6.7.1/src/conv-ldb/cldb.prioritycentralized.h
charm-6.7.1/src/conv-ldb/cldb.neighbor.h
charm-6.7.1/src/conv-ldb/topology.C
charm-6.7.1/src/conv-ldb/cldb.c
charm-6.7.1/src/conv-ldb/graphdefs.h
charm-6.7.1/src/conv-ldb/cldb.workstealing.h
charm-6.7.1/src/conv-ldb/edgelist.c
charm-6.7.1/src/conv-ldb/topology.h
charm-6.7.1/src/conv-ldb/cldb.spray.c
charm-6.7.1/src/conv-ldb/cldb.test.c
charm-6.7.1/src/conv-ldb/priorityqueue.c
charm-6.7.1/src/conv-ldb/generate.c
charm-6.7.1/src/conv-ldb/cldb.h
charm-6.7.1/src/conv-ldb/cldb.prioritycentralized.c
charm-6.7.1/src/conv-ldb/cldb.neighbor.c
charm-6.7.1/src/conv-ldb/cldb.rand.c
charm-6.7.1/src/conv-ldb/cldb.bluegene.c
charm-6.7.1/src/conv-ldb/cldb.none.c
charm-6.7.1/src/conv-ldb/cldb.workstealing.c
charm-6.7.1/src/scripts/
charm-6.7.1/src/scripts/conv-autoconfig.h.in
charm-6.7.1/src/scripts/commitid.sh.orig
charm-6.7.1/src/scripts/testrun
charm-6.7.1/src/scripts/Makefile
charm-6.7.1/src/scripts/conv-config.sh
charm-6.7.1/src/scripts/configure.in
charm-6.7.1/src/scripts/commitid.sh
charm-6.7.1/src/scripts/gatherflat
charm-6.7.1/src/scripts/Make.tau
charm-6.7.1/src/scripts/Make.depends
charm-6.7.1/src/scripts/charmc
charm-6.7.1/src/scripts/charm.mk
charm-6.7.1/src/scripts/gathertree
charm-6.7.1/src/scripts/dep.pl
charm-6.7.1/src/scripts/Makefile.win32
charm-6.7.1/src/scripts/Make.cidepends
charm-6.7.1/src/scripts/configure
charm-6.7.1/src/conv-perf/
charm-6.7.1/src/conv-perf/charmProjections.C
charm-6.7.1/src/conv-perf/README.conv-perf
charm-6.7.1/src/conv-perf/traceCoreCommon.h
charm-6.7.1/src/conv-perf/charmProjections.h
charm-6.7.1/src/conv-perf/threadEvents.h
charm-6.7.1/src/conv-perf/traceCoreCommon.C
charm-6.7.1/src/conv-perf/traceCoreAPI.h
charm-6.7.1/src/conv-perf/allEvents.h
charm-6.7.1/src/conv-perf/machineProjections.C
charm-6.7.1/src/conv-perf/traceCore.C
charm-6.7.1/src/conv-perf/converseProjections.C
charm-6.7.1/src/conv-perf/converseEvents.h
charm-6.7.1/src/conv-perf/machineEvents.h
charm-6.7.1/src/conv-perf/traceCore.h
charm-6.7.1/src/conv-perf/charmEvents.h
charm-6.7.1/src/conv-perf/machineProjections.h
charm-6.7.1/src/conv-perf/converseProjections.h
charm-6.7.1/src/libs/
charm-6.7.1/src/libs/conv-libs/
charm-6.7.1/src/libs/conv-libs/Makefile
charm-6.7.1/src/libs/conv-libs/ddt/
charm-6.7.1/src/libs/conv-libs/ddt/ddt.h
charm-6.7.1/src/libs/conv-libs/ddt/Makefile
charm-6.7.1/src/libs/conv-libs/ddt/ddt.C
charm-6.7.1/src/libs/conv-libs/master-slave/
charm-6.7.1/src/libs/conv-libs/master-slave/cms.c
charm-6.7.1/src/libs/conv-libs/master-slave/Makefile
charm-6.7.1/src/libs/conv-libs/master-slave/cms.h
charm-6.7.1/src/libs/conv-libs/gotmanager/
charm-6.7.1/src/libs/conv-libs/gotmanager/GOTManager.h
charm-6.7.1/src/libs/conv-libs/gotmanager/Makefile
charm-6.7.1/src/libs/conv-libs/gotmanager/GOTManager.C
charm-6.7.1/src/libs/conv-libs/lrpc/
charm-6.7.1/src/libs/conv-libs/lrpc/lrpc.c
charm-6.7.1/src/libs/conv-libs/lrpc/lrpc.h
charm-6.7.1/src/libs/conv-libs/packlib/
charm-6.7.1/src/libs/conv-libs/packlib/Makefile
charm-6.7.1/src/libs/conv-libs/packlib/packf77.C
charm-6.7.1/src/libs/conv-libs/packlib/PackLib.h
charm-6.7.1/src/libs/conv-libs/packlib/packc.C
charm-6.7.1/src/libs/conv-libs/packlib/cpacklib.h
charm-6.7.1/src/libs/conv-libs/packlib/packtest.C
charm-6.7.1/src/libs/Makefile
charm-6.7.1/src/libs/other/
charm-6.7.1/src/libs/other/Makefile
charm-6.7.1/src/libs/ck-libs/
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS_CUDA.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS_Types.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS_CUDA.cu
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM-Tops.doxy
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/Makefile
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS.cc
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS.ci
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/Makefile-CUDA
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/ParFUM_TOPS_Iterators.cc
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops-Dev/libmoduleParFUM_TOPS.dep
charm-6.7.1/src/libs/ck-libs/barrier/
charm-6.7.1/src/libs/ck-libs/barrier/barrier.ci
charm-6.7.1/src/libs/ck-libs/barrier/barrier.C
charm-6.7.1/src/libs/ck-libs/barrier/barrier.h
charm-6.7.1/src/libs/ck-libs/barrier/Makefile
charm-6.7.1/src/libs/ck-libs/irecv/
charm-6.7.1/src/libs/ck-libs/irecv/receiver.ci
charm-6.7.1/src/libs/ck-libs/irecv/receiver.h
charm-6.7.1/src/libs/ck-libs/irecv/receiverf.h
charm-6.7.1/src/libs/ck-libs/irecv/receiver.C
charm-6.7.1/src/libs/ck-libs/irecv/Makefile
charm-6.7.1/src/libs/ck-libs/common.mk
charm-6.7.1/src/libs/ck-libs/sparseReducer/
charm-6.7.1/src/libs/ck-libs/sparseReducer/cksparsereducer.C
charm-6.7.1/src/libs/ck-libs/sparseReducer/cksparsereducer.h
charm-6.7.1/src/libs/ck-libs/sparseReducer/cksparsereducer.ci
charm-6.7.1/src/libs/ck-libs/sparseReducer/Makefile
charm-6.7.1/src/libs/ck-libs/netfem/
charm-6.7.1/src/libs/ck-libs/netfem/netfem_data.C
charm-6.7.1/src/libs/ck-libs/netfem/netfemf.h
charm-6.7.1/src/libs/ck-libs/netfem/Makefile
charm-6.7.1/src/libs/ck-libs/netfem/netfem.C
charm-6.7.1/src/libs/ck-libs/netfem/netfem_data.h
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/Makefile
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/NetFEM_To_Paraview.cpp
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/netfem_update_vtk.h
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/netfem_update_vtk.cpp
charm-6.7.1/src/libs/ck-libs/netfem/ParaviewConverter/.gitignore
charm-6.7.1/src/libs/ck-libs/netfem/netfem.h
charm-6.7.1/src/libs/ck-libs/netfem/textclient.C
charm-6.7.1/src/libs/ck-libs/netfem/netfem.ci
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/searchEngine_impl.h
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/searchEngine.ci
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/searchEngine.h
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/Makefile
charm-6.7.1/src/libs/ck-libs/state_space_searchengine/searchEngine.C
charm-6.7.1/src/libs/ck-libs/ifem/
charm-6.7.1/src/libs/ck-libs/ifem/cg.C
charm-6.7.1/src/libs/ck-libs/ifem/ilsif.h
charm-6.7.1/src/libs/ck-libs/ifem/libmoduleifem.dep
charm-6.7.1/src/libs/ck-libs/ifem/Makefile
charm-6.7.1/src/libs/ck-libs/ifem/ifemf.h
charm-6.7.1/src/libs/ck-libs/ifem/ifemc.h
charm-6.7.1/src/libs/ck-libs/ifem/ilsi.C
charm-6.7.1/src/libs/ck-libs/ifem/ifem.C
charm-6.7.1/src/libs/ck-libs/ifem/solver_test.C
charm-6.7.1/src/libs/ck-libs/ifem/ilsi_vec.h
charm-6.7.1/src/libs/ck-libs/ifem/ilsi.h
charm-6.7.1/src/libs/ck-libs/ifem/ilsic.h
charm-6.7.1/src/libs/ck-libs/ParFUM/
charm-6.7.1/src/libs/ck-libs/ParFUM/mesh_modify.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_Adapt.h
charm-6.7.1/src/libs/ck-libs/ParFUM/main.C
charm-6.7.1/src/libs/ck-libs/ParFUM/compat_init.c
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt_algs.C
charm-6.7.1/src/libs/ck-libs/ParFUM/MsaHashtable.C
charm-6.7.1/src/libs/ck-libs/ParFUM/lock_node.C
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_SA.h
charm-6.7.1/src/libs/ck-libs/ParFUM/util.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_Interpolate.h
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUMf.h
charm-6.7.1/src/libs/ck-libs/ParFUM/mesh_adjacency.C
charm-6.7.1/src/libs/ck-libs/ParFUM/import.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ElemList.h
charm-6.7.1/src/libs/ck-libs/ParFUM/map.C
charm-6.7.1/src/libs/ck-libs/ParFUM/derive_shared.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM.h
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt_if.C
charm-6.7.1/src/libs/ck-libs/ParFUM/compat.C
charm-6.7.1/src/libs/ck-libs/ParFUM/interpolate.C
charm-6.7.1/src/libs/ck-libs/ParFUM/collide.C
charm-6.7.1/src/libs/ck-libs/ParFUM/compat_finit.c
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_SA.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_Types.h
charm-6.7.1/src/libs/ck-libs/ParFUM/MsaHashtable.h
charm-6.7.1/src/libs/ck-libs/ParFUM/call_init.c
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt_lock.C
charm-6.7.1/src/libs/ck-libs/ParFUM/mesh_feature_detect.C
charm-6.7.1/src/libs/ck-libs/ParFUM/import.h
charm-6.7.1/src/libs/ck-libs/ParFUM/parallel_part.C
charm-6.7.1/src/libs/ck-libs/ParFUM/lock.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM.doxy
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM.C
charm-6.7.1/src/libs/ck-libs/ParFUM/Makefile
charm-6.7.1/src/libs/ck-libs/ParFUM/global_numbering.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM.ci
charm-6.7.1/src/libs/ck-libs/ParFUM/bulk_adapt.h
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_Mesh_Modify.h
charm-6.7.1/src/libs/ck-libs/ParFUM/mesh_modify.ci
charm-6.7.1/src/libs/ck-libs/ParFUM/symmetries.C
charm-6.7.1/src/libs/ck-libs/ParFUM/libmoduleParFUM.dep
charm-6.7.1/src/libs/ck-libs/ParFUM/partition.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_internals.h
charm-6.7.1/src/libs/ck-libs/ParFUM/bulk_adapt_ops.C
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt_adj.C
charm-6.7.1/src/libs/ck-libs/ParFUM/bulk_adapt.C
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_Adapt_Algs.h
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_SA.ci
charm-6.7.1/src/libs/ck-libs/ParFUM/compat_driver.c
charm-6.7.1/src/libs/ck-libs/ParFUM/adapt_adj.h
charm-6.7.1/src/libs/ck-libs/ParFUM/bulk_adapt_ops.h
charm-6.7.1/src/libs/ck-libs/ParFUM/ParFUM_locking.h
charm-6.7.1/src/libs/ck-libs/ParFUM/README.txt
charm-6.7.1/src/libs/ck-libs/ParFUM/mesh.C
charm-6.7.1/src/libs/ck-libs/ParFUM/compat_fdriver.c
charm-6.7.1/src/libs/ck-libs/ampi/
charm-6.7.1/src/libs/ck-libs/ampi/compat_ampicm.C
charm-6.7.1/src/libs/ck-libs/ampi/ampirun.in
charm-6.7.1/src/libs/ck-libs/ampi/ampi.C
charm-6.7.1/src/libs/ck-libs/ampi/ampiEvents.h
charm-6.7.1/src/libs/ck-libs/ampi/compat_ampim.C
charm-6.7.1/src/libs/ck-libs/ampi/ampif90
charm-6.7.1/src/libs/ck-libs/ampi/compat_ampius.C
charm-6.7.1/src/libs/ck-libs/ampi/ampiMisc.C
charm-6.7.1/src/libs/ck-libs/ampi/libmoduleampif.dep
charm-6.7.1/src/libs/ck-libs/ampi/compat_ampifm.C
charm-6.7.1/src/libs/ck-libs/ampi/ampi.h
charm-6.7.1/src/libs/ck-libs/ampi/ampi.ci
charm-6.7.1/src/libs/ck-libs/ampi/ampimod.f90
charm-6.7.1/src/libs/ck-libs/ampi/ampif77
charm-6.7.1/src/libs/ck-libs/ampi/ampiCC.in
charm-6.7.1/src/libs/ck-libs/ampi/mpich-alltoall.C
charm-6.7.1/src/libs/ck-libs/ampi/ampif.C
charm-6.7.1/src/libs/ck-libs/ampi/ampiProjections.C
charm-6.7.1/src/libs/ck-libs/ampi/compat_ampifus.C
charm-6.7.1/src/libs/ck-libs/ampi/ampif.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/
charm-6.7.1/src/libs/ck-libs/ampi/romio/COPYRIGHT
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_setsh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_getsh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_nfs/ad_nfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pfs/ad_pfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_xfs/ad_xfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_sfs/ad_sfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ntfs/ad_ntfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adioi_fs_proto.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/mpio_error.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/mpisgi2.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adio_cb_config_list.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/romioconf.h.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/BaseIOErrMsgs.msg
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adioi_error.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adio.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adioi.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adioi_errmsg.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/adio_extern.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/include/mpipr.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_setsh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_getsh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_delete.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_testfs/ad_testfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_hfs/ad_hfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_piofs/ad_piofs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/gencheck.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_write_str.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/get_fp_posn.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/byte_offset.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/flatten.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_end.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_read_coll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_get_sh_fp.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_init.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_aggregate.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_read_str.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/eof_offset.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_read_str_naive.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/lock.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/setfn.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/cb_config_list.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/shfp_fname.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_delete.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_write_coll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/status_setb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/malloc.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_fstype.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/error.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/async_list.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_set_sh_fp.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/req_malloc.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/iscontig.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/common/ad_set_view.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/sgi/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/sgi/mpi3.1/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/sgi/mpi3.1/mpi.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/sgi/mpi3.1/mpif.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_ufs/ad_ufs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_fcntl.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_rdcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_flush.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_delete.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_resize.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_wait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_hints.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_done.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_wrcoll.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/adio/ad_pvfs/ad_pvfs_seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/README
charm-6.7.1/src/libs/ck-libs/ampi/romio/acconfig.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/configure.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/include/
charm-6.7.1/src/libs/ck-libs/ampi/romio/include/mpiof.h.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/include/mpio.h.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/configure
charm-6.7.1/src/libs/ck-libs/ampi/romio/.config_params
charm-6.7.1/src/libs/ck-libs/ampi/romio/README.AMPI
charm-6.7.1/src/libs/ck-libs/ampi/romio/install.sh
charm-6.7.1/src/libs/ck-libs/ampi/romio/util/
charm-6.7.1/src/libs/ck-libs/ampi/romio/util/tarch
charm-6.7.1/src/libs/ck-libs/ampi/romio/util/charmdir
charm-6.7.1/src/libs/ck-libs/ampi/romio/util/romioinstall.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_allb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_info.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iread_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_orde.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_all.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/delete.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_amode.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/set_errh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/open.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iotest.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_atall.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/ioreq_c2f.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iread_at.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/close.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/ioreq_f2c.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_ordb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_alle.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_view.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_ord.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_posn.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/wr_atallb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/rd_atallb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_group.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/mpioimpl.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/mpioprof.h
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/set_atom.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/prealloc.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_size.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_atall.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_ord.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iread.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/set_info.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/seek.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iwrite_at.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fsync.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/file_c2f.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iwrite_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_allef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_posnf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/ireadf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_allf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iotestf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_atf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/wr_atallbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_ordbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/readf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_allf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_errhf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_groupf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iowaitf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/wr_atallef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_ordef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iwrite_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iread_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_allbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_viewf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_infof.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/seekf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_atomf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_extentf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_amodef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_posn_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/fsyncf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/writef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_atf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_sizef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/openf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_atallf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/preallocf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iwrite_atf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/closef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iread_atf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/set_errhf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_atallf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/rd_atallef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/iwritef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_ordf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/deletef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/seek_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_allbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_ordef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_ordf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/rd_atallbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/set_sizef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_shf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/get_bytofff.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/write_ordbf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/set_atomf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/set_viewf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/set_infof.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/fortran/read_allef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_errh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_ordb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_posn_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_at.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_alle.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/seek_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_bytoff.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_sh.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/set_view.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_all.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_atom.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/rd_atalle.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/file_f2c.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/wr_atalle.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iwrite.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/iowait.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/set_size.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_allb.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/get_extent.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/read_at.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi-io/write_orde.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/config.sh
charm-6.7.1/src/libs/ck-libs/ampi/romio/configure2.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/aclocal.m4
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_set.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_dup.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_delete.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_create.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_get.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_getvln.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_free.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_getnksf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_freef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_getnthf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_getvlnf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_getf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_dupf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_deletef.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_createf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/fortran/info_setf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_c2f.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_getnth.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_getnks.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/info/info_f2c.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/subarray.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/darray.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/fortran/
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/fortran/subarrayf.c
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/fortran/Makefile.in
charm-6.7.1/src/libs/ck-libs/ampi/romio/mpi2-other/array/fortran/darrayf.c
charm-6.7.1/src/libs/ck-libs/ampi/ampiProjections.h
charm-6.7.1/src/libs/ck-libs/ampi/ampiimpl.h
charm-6.7.1/src/libs/ck-libs/ampi/Makefile
charm-6.7.1/src/libs/ck-libs/ampi/libmoduleampi.dep
charm-6.7.1/src/libs/ck-libs/ampi/ampiOneSided.C
charm-6.7.1/src/libs/ck-libs/taskGraph/
charm-6.7.1/src/libs/ck-libs/taskGraph/Makefile
charm-6.7.1/src/libs/ck-libs/taskGraph/taskGraph.C
charm-6.7.1/src/libs/ck-libs/taskGraph/taskGraph.h
charm-6.7.1/src/libs/ck-libs/taskGraph/taskGraph.html
charm-6.7.1/src/libs/ck-libs/taskGraph/taskGraph.ci
charm-6.7.1/src/libs/ck-libs/msa2/
charm-6.7.1/src/libs/ck-libs/msa2/msa2.h
charm-6.7.1/src/libs/ck-libs/datatransfer/
charm-6.7.1/src/libs/ck-libs/datatransfer/transfer.C
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcMath.h
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcPlane.cpp
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcVector3.h
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcTetrahedron.inl
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcVector3.cpp
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcTetrahedron.h
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcMath.cpp
charm-6.7.1/src/libs/ck-libs/datatransfer/triSurfMesh.h
charm-6.7.1/src/libs/ck-libs/datatransfer/tetmesh.h
charm-6.7.1/src/libs/ck-libs/datatransfer/Makefile
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcIntr3DTetrTetr.h
charm-6.7.1/src/libs/ck-libs/datatransfer/mapbasic.h
charm-6.7.1/src/libs/ck-libs/datatransfer/transfer.h
charm-6.7.1/src/libs/ck-libs/datatransfer/NOTES_paralleltransfer.txt
charm-6.7.1/src/libs/ck-libs/datatransfer/test_vol_mgc.C
charm-6.7.1/src/libs/ck-libs/datatransfer/test_transfer.C
charm-6.7.1/src/libs/ck-libs/datatransfer/geom_util_test.C
charm-6.7.1/src/libs/ck-libs/datatransfer/test_GenericElement.C
charm-6.7.1/src/libs/ck-libs/datatransfer/test_cg3d.C
charm-6.7.1/src/libs/ck-libs/datatransfer/test_vol_planes.C
charm-6.7.1/src/libs/ck-libs/datatransfer/tetmesh.C
charm-6.7.1/src/libs/ck-libs/datatransfer/geom_util.C
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcMath.inl
charm-6.7.1/src/libs/ck-libs/datatransfer/NOTES_cg3d.txt
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcPlane.h
charm-6.7.1/src/libs/ck-libs/datatransfer/GenericElement.C
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcREADME.txt
charm-6.7.1/src/libs/ck-libs/datatransfer/NOTES.txt
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcTetrahedron.cpp
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcVector3.inl
charm-6.7.1/src/libs/ck-libs/datatransfer/cg3d.C
charm-6.7.1/src/libs/ck-libs/datatransfer/parallelsurfacetransfer.h
charm-6.7.1/src/libs/ck-libs/datatransfer/test_vol.C
charm-6.7.1/src/libs/ck-libs/datatransfer/paralleltransfer.h
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcPlane.inl
charm-6.7.1/src/libs/ck-libs/datatransfer/MagicFMLibType.h
charm-6.7.1/src/libs/ck-libs/datatransfer/volume_planes.h
charm-6.7.1/src/libs/ck-libs/datatransfer/prismMesh.h
charm-6.7.1/src/libs/ck-libs/datatransfer/test_transfer_dir/
charm-6.7.1/src/libs/ck-libs/datatransfer/test_transfer_dir/src.noboite
charm-6.7.1/src/libs/ck-libs/datatransfer/test_transfer_dir/dest.noboite
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcRTLib.h
charm-6.7.1/src/libs/ck-libs/datatransfer/geom_util.h
charm-6.7.1/src/libs/ck-libs/datatransfer/MgcIntr3DTetrTetr.cpp
charm-6.7.1/src/libs/ck-libs/datatransfer/charm_standalone.C
charm-6.7.1/src/libs/ck-libs/datatransfer/tetmesh_noboite.C
charm-6.7.1/src/libs/ck-libs/datatransfer/tetmesh_fem.C
charm-6.7.1/src/libs/ck-libs/datatransfer/GenericElement.h
charm-6.7.1/src/libs/ck-libs/datatransfer/parallelsurfacetransfer.C
charm-6.7.1/src/libs/ck-libs/datatransfer/test_noboite.C
charm-6.7.1/src/libs/ck-libs/datatransfer/cg3d.h
charm-6.7.1/src/libs/ck-libs/datatransfer/volume_planes.C
charm-6.7.1/src/libs/ck-libs/datatransfer/prismMesh.C
charm-6.7.1/src/libs/ck-libs/datatransfer/paralleltransfer.C
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/DataItemTypes.h
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/Make.depends
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/NDMeshStreamer.ci
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/libmoduleNDMeshStreamer.dep
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/VirtualRouter.h
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/Makefile
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/NDMeshStreamer.h
charm-6.7.1/src/libs/ck-libs/NDMeshStreamer/NDMeshStreamer.C
charm-6.7.1/src/libs/ck-libs/idxl/
charm-6.7.1/src/libs/ck-libs/idxl/idxl_layout.C
charm-6.7.1/src/libs/ck-libs/idxl/idxlf.h
charm-6.7.1/src/libs/ck-libs/idxl/idxl_comm.h
charm-6.7.1/src/libs/ck-libs/idxl/idxl.h
charm-6.7.1/src/libs/ck-libs/idxl/idxl_api.C
charm-6.7.1/src/libs/ck-libs/idxl/idxl_layout.h
charm-6.7.1/src/libs/ck-libs/idxl/idxl.C
charm-6.7.1/src/libs/ck-libs/idxl/idxl_comm.C
charm-6.7.1/src/libs/ck-libs/idxl/Makefile
charm-6.7.1/src/libs/ck-libs/idxl/idxlc.h
charm-6.7.1/src/libs/ck-libs/pose/
charm-6.7.1/src/libs/ck-libs/pose/opt3.h
charm-6.7.1/src/libs/ck-libs/pose/eventID.h
charm-6.7.1/src/libs/ck-libs/pose/stats.ci
charm-6.7.1/src/libs/ck-libs/pose/pose.C
charm-6.7.1/src/libs/ck-libs/pose/rep.C
charm-6.7.1/src/libs/ck-libs/pose/pose.doxy
charm-6.7.1/src/libs/ck-libs/pose/adapt2.C
charm-6.7.1/src/libs/ck-libs/pose/cancel.h
charm-6.7.1/src/libs/ck-libs/pose/eqheap.C
charm-6.7.1/src/libs/ck-libs/pose/lbObject.C
charm-6.7.1/src/libs/ck-libs/pose/ldbal.C
charm-6.7.1/src/libs/ck-libs/pose/cons.h
charm-6.7.1/src/libs/ck-libs/pose/adapt3.C
charm-6.7.1/src/libs/ck-libs/pose/memory_temporal.C
charm-6.7.1/src/libs/ck-libs/pose/event.C
charm-6.7.1/src/libs/ck-libs/pose/evmpool.ci
charm-6.7.1/src/libs/ck-libs/pose/stats.h
charm-6.7.1/src/libs/ck-libs/pose/seq.h
charm-6.7.1/src/libs/ck-libs/pose/adapt.C
charm-6.7.1/src/libs/ck-libs/pose/opt2.h
charm-6.7.1/src/libs/ck-libs/pose/libmodulepose.dep
charm-6.7.1/src/libs/ck-libs/pose/pose.h
charm-6.7.1/src/libs/ck-libs/pose/opt3.C
charm-6.7.1/src/libs/ck-libs/pose/eventID.C
charm-6.7.1/src/libs/ck-libs/pose/eqheap.h
charm-6.7.1/src/libs/ck-libs/pose/cancel.C
charm-6.7.1/src/libs/ck-libs/pose/ldbal.ci
charm-6.7.1/src/libs/ck-libs/pose/lbObject.h
charm-6.7.1/src/libs/ck-libs/pose/ldbal.h
charm-6.7.1/src/libs/ck-libs/pose/rep.h
charm-6.7.1/src/libs/ck-libs/pose/adapt2.h
charm-6.7.1/src/libs/ck-libs/pose/cons.C
charm-6.7.1/src/libs/ck-libs/pose/adapt3.h
charm-6.7.1/src/libs/ck-libs/pose/memory_temporal.h
charm-6.7.1/src/libs/ck-libs/pose/event.h
charm-6.7.1/src/libs/ck-libs/pose/SyncStrategies.txt
charm-6.7.1/src/libs/ck-libs/pose/Make.cidepends
charm-6.7.1/src/libs/ck-libs/pose/adapt.h
charm-6.7.1/src/libs/ck-libs/pose/seq.C
charm-6.7.1/src/libs/ck-libs/pose/etrans.pl
charm-6.7.1/src/libs/ck-libs/pose/opt2.C
charm-6.7.1/src/libs/ck-libs/pose/pose.ci
charm-6.7.1/src/libs/ck-libs/pose/stats.C
charm-6.7.1/src/libs/ck-libs/pose/chpt.h
charm-6.7.1/src/libs/ck-libs/pose/opt.C
charm-6.7.1/src/libs/ck-libs/pose/gvt.C
charm-6.7.1/src/libs/ck-libs/pose/adapt4.C
charm-6.7.1/src/libs/ck-libs/pose/spec.h
charm-6.7.1/src/libs/ck-libs/pose/evq.h
charm-6.7.1/src/libs/ck-libs/pose/sim.C
charm-6.7.1/src/libs/ck-libs/pose/srtable.h
charm-6.7.1/src/libs/ck-libs/pose/mempool.C
charm-6.7.1/src/libs/ck-libs/pose/adapt5.C
charm-6.7.1/src/libs/ck-libs/pose/pvtobj.C
charm-6.7.1/src/libs/ck-libs/pose/strat.C
charm-6.7.1/src/libs/ck-libs/pose/pose_config.h
charm-6.7.1/src/libs/ck-libs/pose/evmpool.h
charm-6.7.1/src/libs/ck-libs/pose/gvt.ci
charm-6.7.1/src/libs/ck-libs/pose/Make.depends
charm-6.7.1/src/libs/ck-libs/pose/mempool.ci
charm-6.7.1/src/libs/ck-libs/pose/sim.ci
charm-6.7.1/src/libs/ck-libs/pose/opt.h
charm-6.7.1/src/libs/ck-libs/pose/spec.C
charm-6.7.1/src/libs/ck-libs/pose/gvt.h
charm-6.7.1/src/libs/ck-libs/pose/adapt4.h
charm-6.7.1/src/libs/ck-libs/pose/mempool.h
charm-6.7.1/src/libs/ck-libs/pose/pvtobj.h
charm-6.7.1/src/libs/ck-libs/pose/adapt5.h
charm-6.7.1/src/libs/ck-libs/pose/srtable.C
charm-6.7.1/src/libs/ck-libs/pose/sim.h
charm-6.7.1/src/libs/ck-libs/pose/strat.h
charm-6.7.1/src/libs/ck-libs/pose/evq.C
charm-6.7.1/src/libs/ck-libs/pose/memory_temporal.ci
charm-6.7.1/src/libs/ck-libs/pose/evmpool.C
charm-6.7.1/src/libs/ck-libs/pose/Makefile
charm-6.7.1/src/libs/ck-libs/completion/
charm-6.7.1/src/libs/ck-libs/completion/Make.depends
charm-6.7.1/src/libs/ck-libs/completion/completion.ci
charm-6.7.1/src/libs/ck-libs/completion/completion.h
charm-6.7.1/src/libs/ck-libs/completion/Makefile
charm-6.7.1/src/libs/ck-libs/completion/completion.C
charm-6.7.1/src/libs/ck-libs/multicast/
charm-6.7.1/src/libs/ck-libs/multicast/ckmulticast.C
charm-6.7.1/src/libs/ck-libs/multicast/Makefile
charm-6.7.1/src/libs/ck-libs/multicast/ckmulticast.h
charm-6.7.1/src/libs/ck-libs/multicast/XArraySectionReducer.h
charm-6.7.1/src/libs/ck-libs/multicast/ckmulticast.ci
charm-6.7.1/src/libs/ck-libs/multicast/Make.depends
charm-6.7.1/src/libs/ck-libs/ckloop/
charm-6.7.1/src/libs/ck-libs/ckloop/Makefile
charm-6.7.1/src/libs/ck-libs/ckloop/CkLoop.ci
charm-6.7.1/src/libs/ck-libs/ckloop/CkLoopAPI.h
charm-6.7.1/src/libs/ck-libs/ckloop/CkLoop.C
charm-6.7.1/src/libs/ck-libs/ckloop/CkLoop.h
charm-6.7.1/src/libs/ck-libs/ckloop/Make.depends
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS_CUDA.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS_CUDA.cu
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/Makefile
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/libmoduleParFUM_TOPS.dep
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS_Iterators.cc
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM-Tops.doxy
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS_Types.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS.ci
charm-6.7.1/src/libs/ck-libs/ParFUM-Tops/ParFUM_TOPS.cc
charm-6.7.1/src/libs/ck-libs/io/
charm-6.7.1/src/libs/ck-libs/io/ckio.h
charm-6.7.1/src/libs/ck-libs/io/Makefile
charm-6.7.1/src/libs/ck-libs/io/ckio.C
charm-6.7.1/src/libs/ck-libs/io/ckio.ci
charm-6.7.1/src/libs/ck-libs/mblock/
charm-6.7.1/src/libs/ck-libs/mblock/Makefile
charm-6.7.1/src/libs/ck-libs/mblock/gridutil.h
charm-6.7.1/src/libs/ck-libs/mblock/compat_driver.c
charm-6.7.1/src/libs/ck-libs/mblock/compat_fdriver.c
charm-6.7.1/src/libs/ck-libs/mblock/patch.h
charm-6.7.1/src/libs/ck-libs/mblock/mblockf.h
charm-6.7.1/src/libs/ck-libs/mblock/libmodulemblock.dep
charm-6.7.1/src/libs/ck-libs/mblock/patch.C
charm-6.7.1/src/libs/ck-libs/mblock/mblock_impl.h
charm-6.7.1/src/libs/ck-libs/mblock/mblock.C
charm-6.7.1/src/libs/ck-libs/mblock/mblock.ci
charm-6.7.1/src/libs/ck-libs/mblock/mblock.h
charm-6.7.1/src/libs/ck-libs/MeshStreamer/
charm-6.7.1/src/libs/ck-libs/MeshStreamer/MeshStreamer.C
charm-6.7.1/src/libs/ck-libs/MeshStreamer/MeshStreamer.ci
charm-6.7.1/src/libs/ck-libs/MeshStreamer/MeshStreamer.h
charm-6.7.1/src/libs/ck-libs/MeshStreamer/Makefile
charm-6.7.1/src/libs/ck-libs/liveViz/
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz.h
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz0.C
charm-6.7.1/src/libs/ck-libs/liveViz/Readme.txt
charm-6.7.1/src/libs/ck-libs/liveViz/ImageData.h
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz.C
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz0.h
charm-6.7.1/src/libs/ck-libs/liveViz/liveVizPoll.ci
charm-6.7.1/src/libs/ck-libs/liveViz/ImageData.C
charm-6.7.1/src/libs/ck-libs/liveViz/colorScale.C
charm-6.7.1/src/libs/ck-libs/liveViz/liveVizPoll.C
charm-6.7.1/src/libs/ck-libs/liveViz/Makefile
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz_impl.h
charm-6.7.1/src/libs/ck-libs/liveViz/liveViz.ci
charm-6.7.1/src/libs/ck-libs/liveViz/colorScale.h
charm-6.7.1/src/libs/ck-libs/liveViz/compat_float2rgb.C
charm-6.7.1/src/libs/ck-libs/collide/
charm-6.7.1/src/libs/ck-libs/collide/collidecharm.ci
charm-6.7.1/src/libs/ck-libs/collide/collide_cfg.h
charm-6.7.1/src/libs/ck-libs/collide/collidecharm.C
charm-6.7.1/src/libs/ck-libs/collide/bbox.h
charm-6.7.1/src/libs/ck-libs/collide/collidec.h
charm-6.7.1/src/libs/ck-libs/collide/threadCollide.C
charm-6.7.1/src/libs/ck-libs/collide/collidecharm.h
charm-6.7.1/src/libs/ck-libs/collide/collidef.h
charm-6.7.1/src/libs/ck-libs/collide/threadCollide.ci
charm-6.7.1/src/libs/ck-libs/collide/collide_serial.h
charm-6.7.1/src/libs/ck-libs/collide/collide_buffers.C
charm-6.7.1/src/libs/ck-libs/collide/collide_util.C
charm-6.7.1/src/libs/ck-libs/collide/collide_buffers.h
charm-6.7.1/src/libs/ck-libs/collide/libmodulecollide.dep
charm-6.7.1/src/libs/ck-libs/collide/Makefile
charm-6.7.1/src/libs/ck-libs/collide/collide_serial.C
charm-6.7.1/src/libs/ck-libs/collide/collide_util.h
charm-6.7.1/src/libs/ck-libs/collide/collidecharm_impl.h
charm-6.7.1/src/libs/ck-libs/boomarray/
charm-6.7.1/src/libs/ck-libs/boomarray/BoomArray.h
charm-6.7.1/src/libs/ck-libs/search/
charm-6.7.1/src/libs/ck-libs/search/Makefile
charm-6.7.1/src/libs/ck-libs/search/problem.C
charm-6.7.1/src/libs/ck-libs/search/idastar.h
charm-6.7.1/src/libs/ck-libs/search/search.h
charm-6.7.1/src/libs/ck-libs/search/serialtree.h
charm-6.7.1/src/libs/ck-libs/search/problem.h
charm-6.7.1/src/libs/ck-libs/search/search.C
charm-6.7.1/src/libs/ck-libs/search/idastar.C
charm-6.7.1/src/libs/ck-libs/search/serialtree.C
charm-6.7.1/src/libs/ck-libs/search/search.ci
charm-6.7.1/src/libs/ck-libs/armci/
charm-6.7.1/src/libs/ck-libs/armci/armci.ci
charm-6.7.1/src/libs/ck-libs/armci/armci.h
charm-6.7.1/src/libs/ck-libs/armci/Makefile
charm-6.7.1/src/libs/ck-libs/armci/armci_api.C
charm-6.7.1/src/libs/ck-libs/armci/LICENSE
charm-6.7.1/src/libs/ck-libs/armci/armci_vp.C
charm-6.7.1/src/libs/ck-libs/armci/ARMCI_README.txt
charm-6.7.1/src/libs/ck-libs/armci/armci_impl.h
charm-6.7.1/src/libs/ck-libs/pythonCCS/
charm-6.7.1/src/libs/ck-libs/pythonCCS/Makefile
charm-6.7.1/src/libs/ck-libs/pythonCCS/PythonCCS-client.h
charm-6.7.1/src/libs/ck-libs/pythonCCS/charmdebug-python.ci
charm-6.7.1/src/libs/ck-libs/pythonCCS/PythonCCS-client.C
charm-6.7.1/src/libs/ck-libs/pythonCCS/charmdebug-python.C
charm-6.7.1/src/libs/ck-libs/pythonCCS/PythonCCS.C
charm-6.7.1/src/libs/ck-libs/pythonCCS/LICENSE
charm-6.7.1/src/libs/ck-libs/pythonCCS/PythonCCS.h
charm-6.7.1/src/libs/ck-libs/pythonCCS/PythonCCS.ci
charm-6.7.1/src/libs/ck-libs/fem/
charm-6.7.1/src/libs/ck-libs/fem/map.C
charm-6.7.1/src/libs/ck-libs/fem/compat_fdriver.c
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_algs.C
charm-6.7.1/src/libs/ck-libs/fem/partition.C
charm-6.7.1/src/libs/ck-libs/fem/cktimer.h
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh_modify.h
charm-6.7.1/src/libs/ck-libs/fem/parallel_part.h
charm-6.7.1/src/libs/ck-libs/fem/fem_interpolate.C
charm-6.7.1/src/libs/ck-libs/fem/femf.h
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_new.C
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_lock.h
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh.C
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_algs.h
charm-6.7.1/src/libs/ck-libs/fem/map.h
charm-6.7.1/src/libs/ck-libs/fem/compat_finit.c
charm-6.7.1/src/libs/ck-libs/fem/README.txt
charm-6.7.1/src/libs/ck-libs/fem/fem_interpolate.h
charm-6.7.1/src/libs/ck-libs/fem/make_fem_alone.sh
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh_modify.C
charm-6.7.1/src/libs/ck-libs/fem/parallel_part.C
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh.h
charm-6.7.1/src/libs/ck-libs/fem/libmodulefem.dep
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_lock.C
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_new.h
charm-6.7.1/src/libs/ck-libs/fem/fem.ci
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_if.C
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh_adjacency.C
charm-6.7.1/src/libs/ck-libs/fem/fem_util.h
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt.h
charm-6.7.1/src/libs/ck-libs/fem/fem_compat.C
charm-6.7.1/src/libs/ck-libs/fem/compat_init.c
charm-6.7.1/src/libs/ck-libs/fem/symmetries.C
charm-6.7.1/src/libs/ck-libs/fem/Makefile
charm-6.7.1/src/libs/ck-libs/fem/fem_lock_node.C
charm-6.7.1/src/libs/ck-libs/fem/fem.C
charm-6.7.1/src/libs/ck-libs/fem/fem_lock.C
charm-6.7.1/src/libs/ck-libs/fem/femmain.C
charm-6.7.1/src/libs/ck-libs/fem/compat_driver.c
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt_if.h
charm-6.7.1/src/libs/ck-libs/fem/fem_util.C
charm-6.7.1/src/libs/ck-libs/fem/fem_adapt.C
charm-6.7.1/src/libs/ck-libs/fem/call_init.c
charm-6.7.1/src/libs/ck-libs/fem/fem_impl.h
charm-6.7.1/src/libs/ck-libs/fem/fem.h
charm-6.7.1/src/libs/ck-libs/fem/fem_lock.h
charm-6.7.1/src/libs/ck-libs/fem/fem_mesh_modify.ci
charm-6.7.1/src/libs/ck-libs/fem/fem_lock_node.h
charm-6.7.1/src/libs/ck-libs/tcharm/
charm-6.7.1/src/libs/ck-libs/tcharm/compat_fus.c
charm-6.7.1/src/libs/ck-libs/tcharm/tcharmc.h
charm-6.7.1/src/libs/ck-libs/tcharm/compat_regmm.c
charm-6.7.1/src/libs/ck-libs/tcharm/Makefile
charm-6.7.1/src/libs/ck-libs/tcharm/tcharmmain.C
charm-6.7.1/src/libs/ck-libs/tcharm/compat_us.c
charm-6.7.1/src/libs/ck-libs/tcharm/compat_funs.c
charm-6.7.1/src/libs/ck-libs/tcharm/libmoduletcharmmain.dep
charm-6.7.1/src/libs/ck-libs/tcharm/Make.depends
charm-6.7.1/src/libs/ck-libs/tcharm/tcharm_impl.h
charm-6.7.1/src/libs/ck-libs/tcharm/tcharm.ci
charm-6.7.1/src/libs/ck-libs/tcharm/tcharmmain.ci
charm-6.7.1/src/libs/ck-libs/tcharm/tcharm.C
charm-6.7.1/src/libs/ck-libs/tcharm/tcharm.h
charm-6.7.1/src/libs/ck-libs/tcharm/libmoduletcharm.dep
charm-6.7.1/src/libs/ck-libs/tcharm/tcharmf.h
charm-6.7.1/src/libs/ck-libs/tcharm/compat_uns.c
charm-6.7.1/src/libs/ck-libs/Makefile
charm-6.7.1/src/libs/ck-libs/tmr/
charm-6.7.1/src/libs/ck-libs/tmr/femrefine.C
charm-6.7.1/src/libs/ck-libs/tmr/pgm.C
charm-6.7.1/src/libs/ck-libs/tmr/tri.C
charm-6.7.1/src/libs/ck-libs/tmr/tri.ci
charm-6.7.1/src/libs/ck-libs/tmr/femrefine.h
charm-6.7.1/src/libs/ck-libs/tmr/pgm.h
charm-6.7.1/src/libs/ck-libs/tmr/README
charm-6.7.1/src/libs/ck-libs/tmr/cst_nl.C
charm-6.7.1/src/libs/ck-libs/tmr/xxx.1.node
charm-6.7.1/src/libs/ck-libs/tmr/tri.h
charm-6.7.1/src/libs/ck-libs/tmr/refine.C
charm-6.7.1/src/libs/ck-libs/tmr/Makefile
charm-6.7.1/src/libs/ck-libs/tmr/xxx.1.ele
charm-6.7.1/src/libs/ck-libs/tmr/refinef.h
charm-6.7.1/src/libs/ck-libs/tmr/refine.h
charm-6.7.1/src/libs/ck-libs/tmr/femrefinef.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/libmoduleParFUM_Iterators.dep
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators_Types.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators_CPU.cc
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/Makefile
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators_CUDA.h
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators.ci
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators.cc
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM-Iterators.doxy
charm-6.7.1/src/libs/ck-libs/ParFUM-Iterators/ParFUM_Iterators_CUDA.cu
charm-6.7.1/src/libs/ck-libs/amr/
charm-6.7.1/src/libs/ck-libs/amr/bitvec.h
charm-6.7.1/src/libs/ck-libs/amr/statcoll.h
charm-6.7.1/src/libs/ck-libs/amr/amr.C
charm-6.7.1/src/libs/ck-libs/amr/amr.ci
charm-6.7.1/src/libs/ck-libs/amr/amr.h
charm-6.7.1/src/libs/ck-libs/amr/fifo.c
charm-6.7.1/src/libs/ck-libs/amr/statcoll.C
charm-6.7.1/src/libs/ck-libs/amr/Makefile
charm-6.7.1/src/libs/ck-libs/amr/fifo.h
charm-6.7.1/src/libs/ck-libs/pencilfft/
charm-6.7.1/src/libs/ck-libs/pencilfft/pencilfft.ci
charm-6.7.1/src/libs/ck-libs/pencilfft/pencil_api.h
charm-6.7.1/src/libs/ck-libs/pencilfft/Makefile
charm-6.7.1/src/libs/ck-libs/pencilfft/pencilfft.C
charm-6.7.1/src/libs/ck-libs/pencilfft/libmodulepencilfft.dep
charm-6.7.1/src/libs/ck-libs/pencilfft/pencilfft.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/
charm-6.7.1/src/libs/ck-libs/TMRC2D/old_pgm.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/xxx.1.node
charm-6.7.1/src/libs/ck-libs/TMRC2D/edge.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/small.node
charm-6.7.1/src/libs/ck-libs/TMRC2D/node.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/xxx.1.edge
charm-6.7.1/src/libs/ck-libs/TMRC2D/refine.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/ref.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/refine.ci
charm-6.7.1/src/libs/ck-libs/TMRC2D/Makefile
charm-6.7.1/src/libs/ck-libs/TMRC2D/out.1024.node
charm-6.7.1/src/libs/ck-libs/TMRC2D/out.1024.edge
charm-6.7.1/src/libs/ck-libs/TMRC2D/edge.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/old_pgm.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/small.ele
charm-6.7.1/src/libs/ck-libs/TMRC2D/refine.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/ref.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/pgm-remesh.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/out.1024.ele
charm-6.7.1/src/libs/ck-libs/TMRC2D/tri.ci
charm-6.7.1/src/libs/ck-libs/TMRC2D/tri.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/femrefine.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/xxx.1.ele
charm-6.7.1/src/libs/ck-libs/TMRC2D/old_pgm.ci
charm-6.7.1/src/libs/ck-libs/TMRC2D/messages.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/femrefinef.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/refinef.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/element.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/pgm-test.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/pgm.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/tri.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/cst_nl.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/pgm-coarsen.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/femrefine.C
charm-6.7.1/src/libs/ck-libs/TMRC2D/element.h
charm-6.7.1/src/libs/ck-libs/TMRC2D/pgm.h
charm-6.7.1/src/libs/ck-libs/sparseContiguousReducer/
charm-6.7.1/src/libs/ck-libs/sparseContiguousReducer/Makefile
charm-6.7.1/src/libs/ck-libs/sparseContiguousReducer/cksparsecontiguousreducer.C
charm-6.7.1/src/libs/ck-libs/sparseContiguousReducer/cksparsecontiguousreducer.ci
charm-6.7.1/src/libs/ck-libs/sparseContiguousReducer/cksparsecontiguousreducer.h
charm-6.7.1/src/libs/ck-libs/cache/
charm-6.7.1/src/libs/ck-libs/cache/CkCache.C
charm-6.7.1/src/libs/ck-libs/cache/Makefile
charm-6.7.1/src/libs/ck-libs/cache/CkCache.ci
charm-6.7.1/src/libs/ck-libs/cache/CkCache.h
charm-6.7.1/src/libs/ck-libs/pmaf/
charm-6.7.1/src/libs/ck-libs/pmaf/pgm.C
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh3
charm-6.7.1/src/libs/ck-libs/pmaf/node.h
charm-6.7.1/src/libs/ck-libs/pmaf/chunk.h
charm-6.7.1/src/libs/ck-libs/pmaf/element.C
charm-6.7.1/src/libs/ck-libs/pmaf/messages.h
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh4
charm-6.7.1/src/libs/ck-libs/pmaf/pgm.h
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh32flip
charm-6.7.1/src/libs/ck-libs/pmaf/element.h
charm-6.7.1/src/libs/ck-libs/pmaf/chunk.C
charm-6.7.1/src/libs/ck-libs/pmaf/matrix.h
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh23flip
charm-6.7.1/src/libs/ck-libs/pmaf/Makefile
charm-6.7.1/src/libs/ck-libs/pmaf/ref.C
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh2
charm-6.7.1/src/libs/ck-libs/pmaf/ref.h
charm-6.7.1/src/libs/ck-libs/pmaf/pgm.ci
charm-6.7.1/src/libs/ck-libs/pmaf/chunk.ci
charm-6.7.1/src/libs/ck-libs/pmaf/3Dmesh1
charm-6.7.1/src/libs/ck-libs/fftlib/
charm-6.7.1/src/libs/ck-libs/fftlib/fftlib-sparse.C
charm-6.7.1/src/libs/ck-libs/fftlib/rfftlib-normal.C
charm-6.7.1/src/libs/ck-libs/fftlib/libmodulefftlib.dep
charm-6.7.1/src/libs/ck-libs/fftlib/fftlib.ci
charm-6.7.1/src/libs/ck-libs/fftlib/translines.C
charm-6.7.1/src/libs/ck-libs/fftlib/fftlib-normal.C
charm-6.7.1/src/libs/ck-libs/fftlib/Makefile
charm-6.7.1/src/libs/ck-libs/fftlib/fftlib.h
charm-6.7.1/src/libs/ck-libs/fftlib/README
charm-6.7.1/src/libs/ck-libs/liveViz3d/
charm-6.7.1/src/libs/ck-libs/liveViz3d/stats.cpp
charm-6.7.1/src/libs/ck-libs/liveViz3d/ckviewpoint.cpp
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d1.ci
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d0.ci
charm-6.7.1/src/libs/ck-libs/liveViz3d/Makefile
charm-6.7.1/src/libs/ck-libs/liveViz3d/ckviewable.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/ckviewpoint.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/liveViz3d.ci
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d1_server.C
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d0.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d0_server.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/liveViz3d.dep
charm-6.7.1/src/libs/ck-libs/liveViz3d/Makefile.client
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d0.C
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d1_server.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/stats.h
charm-6.7.1/src/libs/ck-libs/liveViz3d/ckviewable.cpp
charm-6.7.1/src/libs/ck-libs/liveViz3d/lv3d0_server.C
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa-DistPageMgr.h
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa.h
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa-DistPageMgr.ci
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa-distArray.h
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa-distArray.C
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/Makefile
charm-6.7.1/src/libs/ck-libs/multiphaseSharedArrays/msa-common.h
charm-6.7.1/src/QuickThreads/
charm-6.7.1/src/QuickThreads/copyright.h
charm-6.7.1/src/QuickThreads/mkfiles/
charm-6.7.1/src/QuickThreads/mkfiles/hpux-cc
charm-6.7.1/src/QuickThreads/mkfiles/linux-smp-32
charm-6.7.1/src/QuickThreads/mkfiles/asci-red
charm-6.7.1/src/QuickThreads/mkfiles/hpux-gcc
charm-6.7.1/src/QuickThreads/mkfiles/linux-smp
charm-6.7.1/src/QuickThreads/mkfiles/stub-gcc
charm-6.7.1/src/QuickThreads/mkfiles/irix5-cc
charm-6.7.1/src/QuickThreads/mkfiles/generic_alloca
charm-6.7.1/src/QuickThreads/mkfiles/origin
charm-6.7.1/src/QuickThreads/mkfiles/aix64
charm-6.7.1/src/QuickThreads/mkfiles/solaris-gcc
charm-6.7.1/src/QuickThreads/mkfiles/generic
charm-6.7.1/src/QuickThreads/mkfiles/none
charm-6.7.1/src/QuickThreads/mkfiles/cray-t3e-cc
charm-6.7.1/src/QuickThreads/mkfiles/irix5-gcc
charm-6.7.1/src/QuickThreads/mkfiles/generic-mic64
charm-6.7.1/src/QuickThreads/mkfiles/generic64
charm-6.7.1/src/QuickThreads/mkfiles/generic-light
charm-6.7.1/src/QuickThreads/mkfiles/ksr1-cc
charm-6.7.1/src/QuickThreads/mkfiles/i386-gcc-ss
charm-6.7.1/src/QuickThreads/mkfiles/sunos-gcc
charm-6.7.1/src/QuickThreads/mkfiles/aix
charm-6.7.1/src/QuickThreads/mkfiles/aix32-gcc
charm-6.7.1/src/QuickThreads/mkfiles/aix-light64
charm-6.7.1/src/QuickThreads/mkfiles/solaris-cc
charm-6.7.1/src/QuickThreads/mkfiles/axp-osf1-cc
charm-6.7.1/src/QuickThreads/mkfiles/convex
charm-6.7.1/src/QuickThreads/mkfiles/vax-cc
charm-6.7.1/src/QuickThreads/mkfiles/aix-light
charm-6.7.1/src/QuickThreads/mkfiles/axp-gcc
charm-6.7.1/src/QuickThreads/mkfiles/axp-osf2-cc
charm-6.7.1/src/QuickThreads/mkfiles/meerkat
charm-6.7.1/src/QuickThreads/mkfiles/solaris-cc64
charm-6.7.1/src/QuickThreads/mkfiles/generic64-light
charm-6.7.1/src/QuickThreads/mkfiles/aix64-light
charm-6.7.1/src/QuickThreads/mkfiles/i386-gcc
charm-6.7.1/src/QuickThreads/md/
charm-6.7.1/src/QuickThreads/md/axp.README
charm-6.7.1/src/QuickThreads/md/vax.h
charm-6.7.1/src/QuickThreads/md/setjmp_d.h
charm-6.7.1/src/QuickThreads/md/hppa_b.s
charm-6.7.1/src/QuickThreads/md/t3e.h
charm-6.7.1/src/QuickThreads/md/setjmp64_.c
charm-6.7.1/src/QuickThreads/md/t3e_b.s
charm-6.7.1/src/QuickThreads/md/hppa.h
charm-6.7.1/src/QuickThreads/md/i386_b.s
charm-6.7.1/src/QuickThreads/md/setjmp_b.c
charm-6.7.1/src/QuickThreads/md/ksr1.s
charm-6.7.1/src/QuickThreads/md/stub.h
charm-6.7.1/src/QuickThreads/md/mips-irix5.s
charm-6.7.1/src/QuickThreads/md/i386.s
charm-6.7.1/src/QuickThreads/md/axp_b.s
charm-6.7.1/src/QuickThreads/md/m88k.h
charm-6.7.1/src/QuickThreads/md/mips.h
charm-6.7.1/src/QuickThreads/md/vax_b.s
charm-6.7.1/src/QuickThreads/md/axp.h
charm-6.7.1/src/QuickThreads/md/sparc.s
charm-6.7.1/src/QuickThreads/md/mipspro.h
charm-6.7.1/src/QuickThreads/md/setjmp.c
charm-6.7.1/src/QuickThreads/md/stub.c
charm-6.7.1/src/QuickThreads/md/mips.s
charm-6.7.1/src/QuickThreads/md/m88k.s
charm-6.7.1/src/QuickThreads/md/mips_b.s
charm-6.7.1/src/QuickThreads/md/i386.README
charm-6.7.1/src/QuickThreads/md/sparc_b.s
charm-6.7.1/src/QuickThreads/md/stub_b.c
charm-6.7.1/src/QuickThreads/md/mipspro.s
charm-6.7.1/src/QuickThreads/md/sparc.h
charm-6.7.1/src/QuickThreads/md/axp.s
charm-6.7.1/src/QuickThreads/md/mipspro_b.s
charm-6.7.1/src/QuickThreads/md/vax.s
charm-6.7.1/src/QuickThreads/md/m88k_b.s
charm-6.7.1/src/QuickThreads/md/setjmp64.c
charm-6.7.1/src/QuickThreads/md/t3e.s
charm-6.7.1/src/QuickThreads/md/sjalloca.c
charm-6.7.1/src/QuickThreads/md/hppa.s
charm-6.7.1/src/QuickThreads/md/m88k.c
charm-6.7.1/src/QuickThreads/md/ksr1_b.s
charm-6.7.1/src/QuickThreads/md/setjmp_u.h
charm-6.7.1/src/QuickThreads/md/m88k.README
charm-6.7.1/src/QuickThreads/md/i386.h
charm-6.7.1/src/QuickThreads/md/setjmp_m.c
charm-6.7.1/src/QuickThreads/md/ksr1.h
charm-6.7.1/src/QuickThreads/qt.h
charm-6.7.1/src/QuickThreads/qtb.h
charm-6.7.1/src/QuickThreads/CHANGES
charm-6.7.1/src/QuickThreads/time/
charm-6.7.1/src/QuickThreads/time/init
charm-6.7.1/src/QuickThreads/time/prim
charm-6.7.1/src/QuickThreads/time/raw
charm-6.7.1/src/QuickThreads/time/go
charm-6.7.1/src/QuickThreads/time/README.time
charm-6.7.1/src/QuickThreads/time/cswap
charm-6.7.1/src/QuickThreads/time/assim
charm-6.7.1/src/QuickThreads/stp.h
charm-6.7.1/src/QuickThreads/INSTALL
charm-6.7.1/src/QuickThreads/qt.c
charm-6.7.1/src/QuickThreads/meas.c
charm-6.7.1/src/QuickThreads/doc/
charm-6.7.1/src/QuickThreads/doc/qt.ps
charm-6.7.1/src/QuickThreads/Makefile
charm-6.7.1/src/QuickThreads/README
charm-6.7.1/src/QuickThreads/configure
charm-6.7.1/src/QuickThreads/stp.c
charm-6.7.1/src/xlatcpm/
charm-6.7.1/src/xlatcpm/conv-cpm.flex
charm-6.7.1/src/xlatcpm/conv-cpm.c
charm-6.7.1/src/langs/
charm-6.7.1/src/langs/charj/
charm-6.7.1/src/langs/charj/bin/
charm-6.7.1/src/langs/charj/bin/charjc
charm-6.7.1/src/langs/charj/src/
charm-6.7.1/src/langs/charj/src/charj/
charm-6.7.1/src/langs/charj/src/charj/Main.java
charm-6.7.1/src/langs/charj/src/charj/lang/
charm-6.7.1/src/langs/charj/src/charj/lang/Makefile
charm-6.7.1/src/langs/charj/src/charj/lang/Chare.cj
charm-6.7.1/src/langs/charj/src/charj/libs/
charm-6.7.1/src/langs/charj/src/charj/libs/Array.h
charm-6.7.1/src/langs/charj/src/charj/libs/Makefile
charm-6.7.1/src/langs/charj/src/charj/libs/Array.cpp
charm-6.7.1/src/langs/charj/src/charj/translator/
charm-6.7.1/src/langs/charj/src/charj/translator/PackageScope.java
charm-6.7.1/src/langs/charj/src/charj/translator/Charj.stg
charm-6.7.1/src/langs/charj/src/charj/translator/StreamEmitter.java
charm-6.7.1/src/langs/charj/src/charj/translator/Translator.java
charm-6.7.1/src/langs/charj/src/charj/translator/OutputMode.java
charm-6.7.1/src/langs/charj/src/charj/translator/CharjPostAnalysis.g
charm-6.7.1/src/langs/charj/src/charj/translator/CFGBuilder.g
charm-6.7.1/src/langs/charj/src/charj/translator/Charj.g
charm-6.7.1/src/langs/charj/src/charj/translator/TreeTraverser.java
charm-6.7.1/src/langs/charj/src/charj/translator/Scope.java
charm-6.7.1/src/langs/charj/src/charj/translator/Type.java
charm-6.7.1/src/langs/charj/src/charj/translator/ProxyType.java
charm-6.7.1/src/langs/charj/src/charj/translator/MethodSymbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/SymbolResolver.g
charm-6.7.1/src/langs/charj/src/charj/translator/TypeName.java
charm-6.7.1/src/langs/charj/src/charj/translator/VariableSymbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/ASTHTMLPrinter.java
charm-6.7.1/src/langs/charj/src/charj/translator/ExternalSymbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/MSA.g
charm-6.7.1/src/langs/charj/src/charj/translator/CharjPreAnalysis.g
charm-6.7.1/src/langs/charj/src/charj/translator/LiteralType.java
charm-6.7.1/src/langs/charj/src/charj/translator/SymbolDefiner.g
charm-6.7.1/src/langs/charj/src/charj/translator/ArraySectionInitializer.java
charm-6.7.1/src/langs/charj/src/charj/translator/SymbolTable.java
charm-6.7.1/src/langs/charj/src/charj/translator/InitPUPCollector.g
charm-6.7.1/src/langs/charj/src/charj/translator/PointerType.java
charm-6.7.1/src/langs/charj/src/charj/translator/CFGNode.java
charm-6.7.1/src/langs/charj/src/charj/translator/MessageType.java
charm-6.7.1/src/langs/charj/src/charj/translator/Symbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/SymbolWithScope.java
charm-6.7.1/src/langs/charj/src/charj/translator/Accel.g
charm-6.7.1/src/langs/charj/src/charj/translator/Pair.java
charm-6.7.1/src/langs/charj/src/charj/translator/ProxySectionType.java
charm-6.7.1/src/langs/charj/src/charj/translator/InterfaceSymbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/AstModifier.java
charm-6.7.1/src/langs/charj/src/charj/translator/TemplateType.java
charm-6.7.1/src/langs/charj/src/charj/translator/CharjEmitter.g
charm-6.7.1/src/langs/charj/src/charj/translator/LocalScope.java
charm-6.7.1/src/langs/charj/src/charj/translator/ClassSymbol.java
charm-6.7.1/src/langs/charj/src/charj/translator/VariableInitializer.java
charm-6.7.1/src/langs/charj/src/charj/translator/CharjAST.java
charm-6.7.1/src/langs/charj/LICENSE
charm-6.7.1/src/langs/charj/tests/
charm-6.7.1/src/langs/charj/tests/hello/
charm-6.7.1/src/langs/charj/tests/hello/HelloArray.cj
charm-6.7.1/src/langs/charj/tests/divcon/
charm-6.7.1/src/langs/charj/tests/divcon/SimpleDivCon.cj
charm-6.7.1/src/langs/charj/tests/unit/
charm-6.7.1/src/langs/charj/tests/unit/Reduction.cj
charm-6.7.1/src/langs/charj/tests/unit/SimpleSDAG.cj
charm-6.7.1/src/langs/charj/tests/unit/MulticastMessage.cj
charm-6.7.1/src/langs/charj/tests/fib/
charm-6.7.1/src/langs/charj/tests/fib/Fib.cj
charm-6.7.1/src/langs/charj/tests/functional/
charm-6.7.1/src/langs/charj/tests/functional/SDAG.cj
charm-6.7.1/src/langs/charj/tests/functional/ArrayTest.cj
charm-6.7.1/src/langs/charj/tests/functional/ChareArrayBroadcast.cj
charm-6.7.1/src/langs/charj/tests/functional/Label.cj
charm-6.7.1/src/langs/charj/tests/functional/Empty.cj
charm-6.7.1/src/langs/charj/tests/functional/Declarations.cj
charm-6.7.1/src/langs/charj/tests/functional/ReservedWords.cj
charm-6.7.1/src/langs/charj/tests/functional/Makefile
charm-6.7.1/src/langs/charj/tests/functional/ObjectField.cj
charm-6.7.1/src/langs/charj/tests/functional/Assert.cj
charm-6.7.1/src/langs/charj/tests/functional/SimpleChare.cj
charm-6.7.1/src/langs/charj/tests/functional/FieldModifiersFailure.cj
charm-6.7.1/src/langs/charj/tests/functional/TODO
charm-6.7.1/src/langs/charj/tests/functional/Switch.cj
charm-6.7.1/src/langs/charj/tests/functional/Conditional.cj
charm-6.7.1/src/langs/charj/tests/functional/SimpleClass.cj
charm-6.7.1/src/langs/charj/tests/functional/EntryInvocation.cj
charm-6.7.1/src/langs/charj/tests/functional/FuncArgs.cj
charm-6.7.1/src/langs/charj/tests/functional/PrimitiveTypes.cj
charm-6.7.1/src/langs/charj/tests/functional/Reduction.cj
charm-6.7.1/src/langs/charj/tests/functional/WhileLoop.cj
charm-6.7.1/src/langs/charj/tests/functional/SimpleChareArray.cj
charm-6.7.1/src/langs/charj/tests/functional/FieldModifiers.cj
charm-6.7.1/src/langs/charj/tests/functional/Main.cj
charm-6.7.1/src/langs/charj/tests/functional/ForLoop.cj
charm-6.7.1/src/langs/charj/tests/leanmd/
charm-6.7.1/src/langs/charj/tests/leanmd/leanmd.cj
charm-6.7.1/src/langs/charj/tests/run_tests.sh
charm-6.7.1/src/langs/charj/tests/jacobi/
charm-6.7.1/src/langs/charj/tests/jacobi/charj2/
charm-6.7.1/src/langs/charj/tests/jacobi/charj2/jacobi.cj
charm-6.7.1/src/langs/charj/tests/jacobi/sendstrips.cj
charm-6.7.1/src/langs/charj/tests/jacobi/reference/
charm-6.7.1/src/langs/charj/tests/jacobi/reference/Makefile
charm-6.7.1/src/langs/charj/tests/jacobi/reference/bg_config
charm-6.7.1/src/langs/charj/tests/jacobi/reference/parallelJacobi.h
charm-6.7.1/src/langs/charj/tests/jacobi/reference/parallelJacobi.ci
charm-6.7.1/src/langs/charj/tests/jacobi/reference/parallelJacobi.C
charm-6.7.1/src/langs/charj/tests/jacobi/chunk.cj
charm-6.7.1/src/langs/charj/tests/jacobi/Makefile
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/jacobi.h
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/Makefile
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/jacobi.ci
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/jacobi.cc
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/chunk.cj
charm-6.7.1/src/langs/charj/tests/jacobi/hand_translation/jacobi.cj
charm-6.7.1/src/langs/charj/tests/jacobi/jacobi.cj
charm-6.7.1/src/langs/charj/tests/jacobi/TODOS
charm-6.7.1/src/langs/charj/.gitignore
charm-6.7.1/src/langs/charj/lib/
charm-6.7.1/src/langs/charj/lib/JSAP-2.1.jar
charm-6.7.1/src/langs/charj/lib/antlr-3.2.jar
charm-6.7.1/src/langs/charj/lib/ant-antlr3.jar
charm-6.7.1/src/langs/charj/build.xml
charm-6.7.1/src/langs/charj/Makefile
charm-6.7.1/src/langs/charj/share/
charm-6.7.1/src/langs/charj/share/charj.vim
charm-6.7.1/src/langs/jade/
charm-6.7.1/src/langs/jade/Makefile
charm-6.7.1/src/langs/jade/java.tree2.g
charm-6.7.1/src/langs/jade/JArray.h
charm-6.7.1/src/langs/jade/JArray.C
charm-6.7.1/src/langs/jade/java.tree1.g
charm-6.7.1/src/langs/jade/jade.h
charm-6.7.1/src/langs/jade/java.g
charm-6.7.1/src/langs/jade/java.tree.g
charm-6.7.1/src/langs/sdag/
charm-6.7.1/src/langs/sdag/examples/
charm-6.7.1/src/langs/sdag/examples/lu/
charm-6.7.1/src/langs/sdag/examples/lu/lu.sdag
charm-6.7.1/src/langs/sdag/examples/ex1/
charm-6.7.1/src/langs/sdag/examples/ex1/ex1.sdag
charm-6.7.1/src/langs/sdag/examples/ring/
charm-6.7.1/src/langs/sdag/examples/ring/ring.sdag
charm-6.7.1/src/langs/sdag/examples/ex2/
charm-6.7.1/src/langs/sdag/examples/ex2/ex2.sdag
charm-6.7.1/src/langs/sdag/examples/ex5/
charm-6.7.1/src/langs/sdag/examples/ex5/ex5.sdag
charm-6.7.1/src/langs/sdag/examples/ex0/
charm-6.7.1/src/langs/sdag/examples/ex0/ex0.sdag
charm-6.7.1/src/langs/sdag/examples/ex4/
charm-6.7.1/src/langs/sdag/examples/ex4/ex4.sdag
charm-6.7.1/src/langs/sdag/examples/ex3/
charm-6.7.1/src/langs/sdag/examples/ex3/ex3.sdag
charm-6.7.1/src/langs/sdag/doc/
charm-6.7.1/src/langs/sdag/doc/example1/
charm-6.7.1/src/langs/sdag/doc/example1/main.h.html
charm-6.7.1/src/langs/sdag/doc/example1/main.C.html
charm-6.7.1/src/langs/sdag/doc/example1/index.html
charm-6.7.1/src/langs/sdag/doc/example1/main.ci.html
charm-6.7.1/src/langs/sdag/doc/example1/Makefile.html
charm-6.7.1/src/langs/sdag/doc/example1/test.sdag.html
charm-6.7.1/src/langs/sdag/doc/example1/test.ci.html
charm-6.7.1/src/langs/sdag/doc/example1/test.h.html
charm-6.7.1/src/langs/sdag/doc/example1/test.C.html
charm-6.7.1/src/langs/sdag/doc/grammar.html
charm-6.7.1/src/langs/pvmc/
charm-6.7.1/src/langs/pvmc/pvm3.h
charm-6.7.1/src/langs/pvmc/pvmc_conv.c
charm-6.7.1/src/langs/pvmc/pvmc_pack.c
charm-6.7.1/src/langs/pvmc/pvmc_buf.c
charm-6.7.1/src/langs/pvmc/pvmc_main.c
charm-6.7.1/src/langs/pvmc/pvmc_comm.c
charm-6.7.1/src/langs/pvmc/pvmctest.c
charm-6.7.1/src/langs/pvmc/pvmc_groups.c
charm-6.7.1/src/langs/pvmc/pvmc.h
charm-6.7.1/src/langs/bluegene/
charm-6.7.1/src/langs/bluegene/blue.h
charm-6.7.1/src/langs/bluegene/BlueGene.h
charm-6.7.1/src/langs/bluegene/blue_standalone.C
charm-6.7.1/src/langs/bluegene/bg_config
charm-6.7.1/src/langs/bluegene/bigsim_record.h
charm-6.7.1/src/langs/bluegene/bigsim_timing.C
charm-6.7.1/src/langs/bluegene/bigsim_node.C
charm-6.7.1/src/langs/bluegene/blue.C
charm-6.7.1/src/langs/bluegene/BlueGene.C
charm-6.7.1/src/langs/bluegene/bigsim_debug.h
charm-6.7.1/src/langs/bluegene/bigsim_api.C
charm-6.7.1/src/langs/bluegene/blue_types.h
charm-6.7.1/src/langs/bluegene/blue_impl.h
charm-6.7.1/src/langs/bluegene/bigsim_record.C
charm-6.7.1/src/langs/bluegene/blue_defs.h
charm-6.7.1/src/langs/bluegene/bigsim_network.h
charm-6.7.1/src/langs/bluegene/bigsim_timing.h
charm-6.7.1/src/langs/bluegene/bigsim_logs.C
charm-6.7.1/src/langs/bluegene/bgconverse.h
charm-6.7.1/src/langs/bluegene/bigsim_proc.C
charm-6.7.1/src/langs/bluegene/BlueGene.ci
charm-6.7.1/src/langs/bluegene/blue-conv.h
charm-6.7.1/src/langs/bluegene/bigsim_ooc.C
charm-6.7.1/src/langs/bluegene/blue_stub.C
charm-6.7.1/src/langs/bluegene/bigsim_init.C
charm-6.7.1/src/langs/bluegene/shared_alloc.C
charm-6.7.1/src/langs/bluegene/shared-alloc.h
charm-6.7.1/src/langs/bluegene/bigsim_logs.h
charm-6.7.1/src/langs/bluegene/bigsim_read.C
charm-6.7.1/src/langs/bluegene/bigsim_ooc.h
charm-6.7.1/src/langs/simplemsg/
charm-6.7.1/src/langs/simplemsg/sm.h
charm-6.7.1/src/langs/simplemsg/simplemsg.h
charm-6.7.1/src/langs/simplemsg/simplemsg.c
charm-6.7.1/src/langs/simplemsg/sm.c
charm-6.7.1/src/langs/f90charm/
charm-6.7.1/src/langs/f90charm/f90main.ci
charm-6.7.1/src/langs/f90charm/futil.f90
charm-6.7.1/src/langs/f90charm/f90main.h
charm-6.7.1/src/langs/f90charm/f90main.C
charm-6.7.1/src/ck-cp/
charm-6.7.1/src/ck-cp/pathHistory.h
charm-6.7.1/src/ck-cp/controlPointsf.h
charm-6.7.1/src/ck-cp/pathHistory.C
charm-6.7.1/src/ck-cp/controlPointsNoTrace.ci
charm-6.7.1/src/ck-cp/NelderMeadStateDiagram.pdf
charm-6.7.1/src/ck-cp/API-generator/
charm-6.7.1/src/ck-cp/API-generator/cp_effects.pl
charm-6.7.1/src/ck-cp/API-generator/cp_effects.h
charm-6.7.1/src/ck-cp/API-generator/cp_effects.txt
charm-6.7.1/src/ck-cp/API-generator/cp_effects.C
charm-6.7.1/src/ck-cp/controlPoints.C
charm-6.7.1/src/ck-cp/arrayRedistributor.h
charm-6.7.1/src/ck-cp/pathHistory.ci
charm-6.7.1/src/ck-cp/controlPoints.h
charm-6.7.1/src/ck-cp/arrayRedistributor.C
charm-6.7.1/src/ck-cp/controlPoints.ci
charm-6.7.1/src/arch/
charm-6.7.1/src/arch/net-sol/
charm-6.7.1/src/arch/net-sol/conv-mach.h
charm-6.7.1/src/arch/net-sol/cc-cc.h
charm-6.7.1/src/arch/net-sol/conv-mach.sh
charm-6.7.1/src/arch/net-sol/cc-cc64.sh
charm-6.7.1/src/arch/net-sol/conv-mach-smp.sh
charm-6.7.1/src/arch/net-sol/cc-cc64.h
charm-6.7.1/src/arch/net-sol/cc-cc.sh
charm-6.7.1/src/arch/net-sol/conv-mach-gm.h
charm-6.7.1/src/arch/net-sol/conv-mach-gm.sh
charm-6.7.1/src/arch/net-sol/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-sol/
charm-6.7.1/src/arch/mpi-sol/cc-mpcc.sh
charm-6.7.1/src/arch/mpi-sol/conv-mach.sh
charm-6.7.1/src/arch/mpi-sol/cc-mpcc.h
charm-6.7.1/src/arch/mpi-sol/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-sol/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-sol/conv-mach.h
charm-6.7.1/src/arch/net-win32/
charm-6.7.1/src/arch/net-win32/conv-mach.h
charm-6.7.1/src/arch/net-win32/conv-mach.sh
charm-6.7.1/src/arch/net-win32/conv-mach-smp.sh
charm-6.7.1/src/arch/net-win32/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-bluegeneq/
charm-6.7.1/src/arch/mpi-bluegeneq/conv-mach.h
charm-6.7.1/src/arch/mpi-bluegeneq/cc-xlc.sh
charm-6.7.1/src/arch/mpi-bluegeneq/conv-mach.sh
charm-6.7.1/src/arch/mpi-bluegeneq/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-bluegeneq/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-bluegeneq/charmrun
charm-6.7.1/src/arch/mpi-bluegeneq/cc-gcc.sh
charm-6.7.1/src/arch/mpi-bluegeneq/cc-xlc.h
charm-6.7.1/src/arch/mpi-bluegeneq/cc-gcc.h
charm-6.7.1/src/arch/net-sol-x86_64/
charm-6.7.1/src/arch/net-sol-x86_64/cc-cc.h
charm-6.7.1/src/arch/net-sol-x86_64/conv-mach.sh
charm-6.7.1/src/arch/net-sol-x86_64/cc-cc64.sh
charm-6.7.1/src/arch/net-sol-x86_64/cc-cc64.h
charm-6.7.1/src/arch/net-sol-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/net-sol-x86_64/cc-cc.sh
charm-6.7.1/src/arch/net-sol-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/net-sol-x86_64/conv-mach.h
charm-6.7.1/src/arch/verbs/
charm-6.7.1/src/arch/verbs/conv-mach-local.h
charm-6.7.1/src/arch/verbs/machine.c
charm-6.7.1/src/arch/verbs/machine-dgram.c
charm-6.7.1/src/arch/verbs/machine-recover.c
charm-6.7.1/src/arch/verbs/conv-mach-mlogft.h
charm-6.7.1/src/arch/verbs/conv-mach-syncft.sh
charm-6.7.1/src/arch/verbs/machine-ibverbs.c
charm-6.7.1/src/arch/verbs/conv-mach-causalft.sh
charm-6.7.1/src/arch/verbs/conv-mach-mlogft.sh
charm-6.7.1/src/arch/verbs/conv-mach-syncft.h
charm-6.7.1/src/arch/verbs/machine-persistent.c
charm-6.7.1/src/arch/verbs/machine-ibud.c
charm-6.7.1/src/arch/verbs/conv-mach-local.sh
charm-6.7.1/src/arch/verbs/Makefile.machine
charm-6.7.1/src/arch/verbs/conv-mach-causalft.h
charm-6.7.1/src/arch/verbs/conv-common.h
charm-6.7.1/src/arch/shmem/
charm-6.7.1/src/arch/shmem/machine.c
charm-6.7.1/src/arch/shmem/conv-common.h
charm-6.7.1/src/arch/net/
charm-6.7.1/src/arch/net/machine-ammasso.h
charm-6.7.1/src/arch/net/conv-mach-syncft.sh
charm-6.7.1/src/arch/net/machine.c
charm-6.7.1/src/arch/net/machine-mx.c
charm-6.7.1/src/arch/net/conv-mach-mlogft.h
charm-6.7.1/src/arch/net/machine-sysvshm.c
charm-6.7.1/src/arch/net/conv-mach-causalft.sh
charm-6.7.1/src/arch/net/Makefile.machine
charm-6.7.1/src/arch/net/conv-mach-causalft.h
charm-6.7.1/src/arch/net/conv-mach-syncft.h
charm-6.7.1/src/arch/net/machine-eth.c
charm-6.7.1/src/arch/net/conv-mach-tcp.sh
charm-6.7.1/src/arch/net/conv-common.h
charm-6.7.1/src/arch/net/machine-ibverbs.c
charm-6.7.1/src/arch/net/machine-ibud.c
charm-6.7.1/src/arch/net/machine-ammasso.c
charm-6.7.1/src/arch/net/machine-dgram.c
charm-6.7.1/src/arch/net/conv-mach-mlogft.sh
charm-6.7.1/src/arch/net/conv-mach-local.h
charm-6.7.1/src/arch/net/machine-pxshm.c
charm-6.7.1/src/arch/net/conv-mach-local.sh
charm-6.7.1/src/arch/net/machine-gm.c
charm-6.7.1/src/arch/net/machine-recover.c
charm-6.7.1/src/arch/net/conv-mach-tcp.h
charm-6.7.1/src/arch/net/machine-tcp.c
charm-6.7.1/src/arch/net-win64/
charm-6.7.1/src/arch/net-win64/conv-mach-smp.h
charm-6.7.1/src/arch/net-win64/conv-mach-smp.sh
charm-6.7.1/src/arch/net-win64/conv-mach.h
charm-6.7.1/src/arch/net-win64/conv-mach.sh
charm-6.7.1/src/arch/sim-linux/
charm-6.7.1/src/arch/sim-linux/conv-mach.sh
charm-6.7.1/src/arch/sim-linux/conv-mach.h
charm-6.7.1/src/arch/gni-crayxe/
charm-6.7.1/src/arch/gni-crayxe/conv-mach-xpmem.sh
charm-6.7.1/src/arch/gni-crayxe/charmrun
charm-6.7.1/src/arch/gni-crayxe/conv-mach-smp.sh
charm-6.7.1/src/arch/gni-crayxe/conv-mach-pxshm.sh
charm-6.7.1/src/arch/gni-crayxe/conv-mach-cuda.h
charm-6.7.1/src/arch/gni-crayxe/conv-mach-smp.h
charm-6.7.1/src/arch/gni-crayxe/conv-mach.sh
charm-6.7.1/src/arch/gni-crayxe/conv-mach-pxshm.h
charm-6.7.1/src/arch/gni-crayxe/conv-mach-cuda.sh
charm-6.7.1/src/arch/gni-crayxe/conv-mach.h
charm-6.7.1/src/arch/gni-crayxe/conv-mach-xpmem.h
charm-6.7.1/src/arch/cuda/
charm-6.7.1/src/arch/cuda/hybridAPI/
charm-6.7.1/src/arch/cuda/hybridAPI/wrqueue.h
charm-6.7.1/src/arch/cuda/hybridAPI/wr.h
charm-6.7.1/src/arch/cuda/hybridAPI/wrqueue.cu
charm-6.7.1/src/arch/cuda/hybridAPI/Makefile
charm-6.7.1/src/arch/cuda/hybridAPI/cuda-hybrid-api.h
charm-6.7.1/src/arch/cuda/hybridAPI/cuda-hybrid-api.cu
charm-6.7.1/src/arch/net-sol-x86/
charm-6.7.1/src/arch/net-sol-x86/conv-mach.h
charm-6.7.1/src/arch/net-sol-x86/conv-mach.sh
charm-6.7.1/src/arch/net-darwin-x86/
charm-6.7.1/src/arch/net-darwin-x86/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-darwin-x86/conv-mach.sh
charm-6.7.1/src/arch/net-darwin-x86/conv-mach-smp.sh
charm-6.7.1/src/arch/net-darwin-x86/conv-mach-pxshm.sh
charm-6.7.1/src/arch/net-darwin-x86/conv-mach.h
charm-6.7.1/src/arch/net-darwin-x86/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-win32/
charm-6.7.1/src/arch/mpi-win32/conv-mach.sh
charm-6.7.1/src/arch/mpi-win32/conv-mach.h
charm-6.7.1/src/arch/mpi-win64/
charm-6.7.1/src/arch/mpi-win64/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-win64/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-win64/conv-mach.sh
charm-6.7.1/src/arch/mpi-win64/conv-mach.h
charm-6.7.1/src/arch/net-linux-ia64/
charm-6.7.1/src/arch/net-linux-ia64/cc-ecc.h
charm-6.7.1/src/arch/net-linux-ia64/conv-mach-gm.h
charm-6.7.1/src/arch/net-linux-ia64/conv-mach.h
charm-6.7.1/src/arch/net-linux-ia64/cc-ecc.sh
charm-6.7.1/src/arch/net-linux-ia64/conv-mach.sh
charm-6.7.1/src/arch/net-linux-ia64/conv-mach-smp.sh
charm-6.7.1/src/arch/net-linux-ia64/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux-ia64/conv-mach-gm.sh
charm-6.7.1/src/arch/gemini_gni-crayxe/
charm-6.7.1/src/arch/gemini_gni-crayxe/vdir_link
charm-6.7.1/src/arch/mpi-linux-x86_64/
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-mic.h
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-gm2.h
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/cc-mpicxx.h
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-cuda.h
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-mic.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-x86_64/cc-pathscale.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-cuda.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-gm2.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/cc-pathscale.h
charm-6.7.1/src/arch/mpi-linux-x86_64/cc-mpicxx.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-scyld.sh
charm-6.7.1/src/arch/mpi-linux-x86_64/conv-mach-scyld.h
charm-6.7.1/src/arch/uth-win32/
charm-6.7.1/src/arch/uth-win32/conv-mach.sh
charm-6.7.1/src/arch/uth-win32/conv-mach.h
charm-6.7.1/src/arch/net-linux-arm7/
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-ibverbs.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-sysvshm.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pthreads.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pedantic.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pedantic.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-sysvshm.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-ibverbs.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pxshm.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-cuda.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-smp.sh
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-cuda.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach-pthreads.h
charm-6.7.1/src/arch/net-linux-arm7/conv-mach.sh
charm-6.7.1/src/arch/net-darwin-x86_64/
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach.h
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach.sh
charm-6.7.1/src/arch/net-darwin-x86_64/conv-mach-pxshm.sh
charm-6.7.1/src/arch/netlrts-darwin-x86_64/
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach.sh
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach-pxshm.h
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach-pxshm.sh
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach.h
charm-6.7.1/src/arch/netlrts-darwin-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/net-aix-ppc/
charm-6.7.1/src/arch/net-aix-ppc/conv-mach.h
charm-6.7.1/src/arch/net-aix-ppc/conv-mach-smp.h
charm-6.7.1/src/arch/net-aix-ppc/cc-gcc.h
charm-6.7.1/src/arch/net-aix-ppc/conv-mach-pxshm.sh
charm-6.7.1/src/arch/net-aix-ppc/conv-mach.sh
charm-6.7.1/src/arch/net-aix-ppc/conv-mach-smp.sh
charm-6.7.1/src/arch/net-aix-ppc/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-aix-ppc/cc-gcc.sh
charm-6.7.1/src/arch/mpi-crayxe/
charm-6.7.1/src/arch/mpi-crayxe/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-crayxe/conv-mach.h
charm-6.7.1/src/arch/mpi-crayxe/conv-mach-cuda.h
charm-6.7.1/src/arch/mpi-crayxe/conv-mach.sh
charm-6.7.1/src/arch/mpi-crayxe/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-crayxe/conv-mach-cuda.sh
charm-6.7.1/src/arch/common/
charm-6.7.1/src/arch/common/conv-mach-persistent.h
charm-6.7.1/src/arch/common/conv-mach-papi.sh
charm-6.7.1/src/arch/common/conv-mach-ifort.sh
charm-6.7.1/src/arch/common/cc-gcc.h
charm-6.7.1/src/arch/common/conv-mach-g95.h
charm-6.7.1/src/arch/common/conv-mach-ooc.sh
charm-6.7.1/src/arch/common/cc-icc.h
charm-6.7.1/src/arch/common/cc-craycc.sh
charm-6.7.1/src/arch/common/cc-iccstatic.sh
charm-6.7.1/src/arch/common/conv-mach-bigsim.sh
charm-6.7.1/src/arch/common/cc-pgcc.sh
charm-6.7.1/src/arch/common/cc-gcc.sh
charm-6.7.1/src/arch/common/cc-icc8.sh
charm-6.7.1/src/arch/common/conv-mach-lcs.sh
charm-6.7.1/src/arch/common/special.sh
charm-6.7.1/src/arch/common/cc-xlc.h
charm-6.7.1/src/arch/common/conv-mach-papi.h
charm-6.7.1/src/arch/common/cc-xlc64.h
charm-6.7.1/src/arch/common/conv-mach-g95.sh
charm-6.7.1/src/arch/common/conv-mach-persistent.sh
charm-6.7.1/src/arch/common/cc-craycc.h
charm-6.7.1/src/arch/common/cc-gcc3.h
charm-6.7.1/src/arch/common/conv-mach-ifort.h
charm-6.7.1/src/arch/common/conv-mach-lcs.h
charm-6.7.1/src/arch/common/cc-iccstatic.h
charm-6.7.1/src/arch/common/cc-clang.h
charm-6.7.1/src/arch/common/conv-mach-gfortran.sh
charm-6.7.1/src/arch/common/conv-mach-bigemulator.h
charm-6.7.1/src/arch/common/cc-clang.sh
charm-6.7.1/src/arch/common/cc-xlc.sh
charm-6.7.1/src/arch/common/conv-mach-gfortran.h
charm-6.7.1/src/arch/common/cc-xlc64.sh
charm-6.7.1/src/arch/common/conv-mach-bigsim.h
charm-6.7.1/src/arch/common/cc-icc8.h
charm-6.7.1/src/arch/common/conv-mach-tsan.h
charm-6.7.1/src/arch/common/conv-mach-tsan.sh
charm-6.7.1/src/arch/common/cc-gcc3.sh
charm-6.7.1/src/arch/common/cc-icc.sh
charm-6.7.1/src/arch/common/conv-mach-ooc.h
charm-6.7.1/src/arch/common/cc-pgcc.h
charm-6.7.1/src/arch/common/conv-mach-pgf90.h
charm-6.7.1/src/arch/common/conv-mach-pgf90.sh
charm-6.7.1/src/arch/common/conv-mach-bigemulator.sh
charm-6.7.1/src/arch/shmem-crayxe/
charm-6.7.1/src/arch/shmem-crayxe/conv-mach.sh
charm-6.7.1/src/arch/shmem-crayxe/charmrun
charm-6.7.1/src/arch/shmem-crayxe/conv-mach.h
charm-6.7.1/src/arch/netlrts-linux/
charm-6.7.1/src/arch/netlrts-linux/conv-mach-smp.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach-turing.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach-scyld.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-sysvshm.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach-turing.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-pxshm.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-smp.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-sysvshm.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-pxshm.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach-clustermatic.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach.sh
charm-6.7.1/src/arch/netlrts-linux/conv-mach-scyld.h
charm-6.7.1/src/arch/netlrts-linux/conv-mach-clustermatic.h
charm-6.7.1/src/arch/multicore-cygwin/
charm-6.7.1/src/arch/multicore-cygwin/conv-mach.sh
charm-6.7.1/src/arch/multicore-cygwin/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-ia64/
charm-6.7.1/src/arch/mpi-linux-ia64/conv-mach.sh
charm-6.7.1/src/arch/mpi-linux-ia64/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-ia64/cc-ecc.sh
charm-6.7.1/src/arch/mpi-linux-ia64/cc-ecc.h
charm-6.7.1/src/arch/net-linux-ppc/
charm-6.7.1/src/arch/net-linux-ppc/cc-xlc.sh
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-ibverbs.h
charm-6.7.1/src/arch/net-linux-ppc/cc-gcc64.h
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-mx.sh
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-smp.sh
charm-6.7.1/src/arch/net-linux-ppc/cc-gcc64.sh
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-mx64.sh
charm-6.7.1/src/arch/net-linux-ppc/conv-mach.sh
charm-6.7.1/src/arch/net-linux-ppc/cc-xlc64.h
charm-6.7.1/src/arch/net-linux-ppc/cc-xlc.h
charm-6.7.1/src/arch/net-linux-ppc/conv-mach.h
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-mx64.h
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-mx.h
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux-ppc/cc-xlc64.sh
charm-6.7.1/src/arch/net-linux-ppc/conv-mach-ibverbs.sh
charm-6.7.1/src/arch/uth-linux-x86_64/
charm-6.7.1/src/arch/uth-linux-x86_64/conv-mach.sh
charm-6.7.1/src/arch/uth-linux-x86_64/conv-mach.h
charm-6.7.1/src/arch/multicore/
charm-6.7.1/src/arch/multicore/gdir_link
charm-6.7.1/src/arch/multicore/charmrun
charm-6.7.1/src/arch/uth/
charm-6.7.1/src/arch/uth/charmrun
charm-6.7.1/src/arch/uth/machine.c
charm-6.7.1/src/arch/uth/conv-common.h
charm-6.7.1/src/arch/conv-mach-fix.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-pxshm.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-sysvshm.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-clustermatic.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-pedantic.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-sysvshm.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-pxshm.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-pedantic.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-clustermatic.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-cuda.sh
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-cuda.h
charm-6.7.1/src/arch/netlrts-linux-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-sol-x86_64/
charm-6.7.1/src/arch/mpi-sol-x86_64/conv-mach.h
charm-6.7.1/src/arch/mpi-sol-x86_64/conv-mach.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/
charm-6.7.1/src/arch/pamilrts-bluegeneq/conv-mach-smp.h
charm-6.7.1/src/arch/pamilrts-bluegeneq/cc-xlc.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/cc-gcc.h
charm-6.7.1/src/arch/pamilrts-bluegeneq/conv-mach.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/conv-mach-smp.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/conv-mach.h
charm-6.7.1/src/arch/pamilrts-bluegeneq/memalloc.c
charm-6.7.1/src/arch/pamilrts-bluegeneq/cc-gcc.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/cc-clang.sh
charm-6.7.1/src/arch/pamilrts-bluegeneq/charmrun
charm-6.7.1/src/arch/multicore-darwin-x86_64/
charm-6.7.1/src/arch/multicore-darwin-x86_64/conv-mach.sh
charm-6.7.1/src/arch/multicore-darwin-x86_64/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-amd64/
charm-6.7.1/src/arch/mpi-linux-amd64/vdir_link
charm-6.7.1/src/arch/template/
charm-6.7.1/src/arch/template/conv-common.h
charm-6.7.1/src/arch/template/machine-TEMPLATE.c
charm-6.7.1/src/arch/template/conv-mach.sh
charm-6.7.1/src/arch/template/machine.c
charm-6.7.1/src/arch/template/conv-mach.h
charm-6.7.1/src/arch/template/README
charm-6.7.1/src/arch/pamilrts/
charm-6.7.1/src/arch/pamilrts/manytomany.c
charm-6.7.1/src/arch/pamilrts/conv-common.h
charm-6.7.1/src/arch/pamilrts/machine-persistent.h
charm-6.7.1/src/arch/pamilrts/conv-mach-async.h
charm-6.7.1/src/arch/pamilrts/conv-mach-async.sh
charm-6.7.1/src/arch/pamilrts/machine.c
charm-6.7.1/src/arch/pamilrts/machine-persistent.c
charm-6.7.1/src/arch/pamilrts/lrtsqueue.h
charm-6.7.1/src/arch/pamilrts/Makefile.machine
charm-6.7.1/src/arch/pamilrts/conv-common.sh
charm-6.7.1/src/arch/mpi-cygwin/
charm-6.7.1/src/arch/mpi-cygwin/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-cygwin/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-cygwin/conv-mach.h
charm-6.7.1/src/arch/mpi-cygwin/conv-mach.sh
charm-6.7.1/src/arch/sim/
charm-6.7.1/src/arch/sim/README
charm-6.7.1/src/arch/sim/sim.c
charm-6.7.1/src/arch/sim/heap.c
charm-6.7.1/src/arch/sim/simrand.c
charm-6.7.1/src/arch/sim/charmrun
charm-6.7.1/src/arch/sim/ext_func.h
charm-6.7.1/src/arch/sim/machine.h
charm-6.7.1/src/arch/sim/net.c
charm-6.7.1/src/arch/sim/simqmng.c
charm-6.7.1/src/arch/sim/machine.c
charm-6.7.1/src/arch/multicore-linux-ppc/
charm-6.7.1/src/arch/multicore-linux-ppc/cc-xlc.h
charm-6.7.1/src/arch/multicore-linux-ppc/conv-mach.h
charm-6.7.1/src/arch/multicore-linux-ppc/conv-mach.sh
charm-6.7.1/src/arch/multicore-linux-ppc/cc-xlc64.sh
charm-6.7.1/src/arch/multicore-linux-ppc/cc-xlc64.h
charm-6.7.1/src/arch/multicore-linux-ppc/cc-xlc.sh
charm-6.7.1/src/arch/multicore-win64/
charm-6.7.1/src/arch/multicore-win64/conv-mach.h
charm-6.7.1/src/arch/multicore-win64/conv-mach.sh
charm-6.7.1/src/arch/.gitignore
charm-6.7.1/src/arch/gni-crayxc/
charm-6.7.1/src/arch/gni-crayxc/conv-mach.sh
charm-6.7.1/src/arch/gni-crayxc/conv-mach-smp.h
charm-6.7.1/src/arch/gni-crayxc/conv-mach-cuda.sh
charm-6.7.1/src/arch/gni-crayxc/conv-mach-xpmem.sh
charm-6.7.1/src/arch/gni-crayxc/conv-mach-xpmem.h
charm-6.7.1/src/arch/gni-crayxc/conv-mach.h
charm-6.7.1/src/arch/gni-crayxc/conv-mach-cuda.h
charm-6.7.1/src/arch/gni-crayxc/charmrun
charm-6.7.1/src/arch/gni-crayxc/conv-mach-pxshm.sh
charm-6.7.1/src/arch/gni-crayxc/conv-mach-smp.sh
charm-6.7.1/src/arch/gni-crayxc/conv-mach-pxshm.h
charm-6.7.1/src/arch/multicore-win32/
charm-6.7.1/src/arch/multicore-win32/conv-mach.sh
charm-6.7.1/src/arch/multicore-win32/conv-mach.h
charm-6.7.1/src/arch/net-linux/
charm-6.7.1/src/arch/net-linux/conv-mach-scyld.sh
charm-6.7.1/src/arch/net-linux/conv-mach-turing.h
charm-6.7.1/src/arch/net-linux/conv-mach-scyld.h
charm-6.7.1/src/arch/net-linux/conv-mach-sysvshm.h
charm-6.7.1/src/arch/net-linux/conv-mach.sh
charm-6.7.1/src/arch/net-linux/conv-mach-clustermatic.h
charm-6.7.1/src/arch/net-linux/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux/conv-mach-smp.sh
charm-6.7.1/src/arch/net-linux/conv-mach-mx.h
charm-6.7.1/src/arch/net-linux/conv-mach-gm.sh
charm-6.7.1/src/arch/net-linux/conv-mach-turing.sh
charm-6.7.1/src/arch/net-linux/conv-mach.h
charm-6.7.1/src/arch/net-linux/conv-mach-pxshm.sh
charm-6.7.1/src/arch/net-linux/conv-mach-sysvshm.sh
charm-6.7.1/src/arch/net-linux/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-linux/conv-mach-gm.h
charm-6.7.1/src/arch/net-linux/conv-mach-mx.sh
charm-6.7.1/src/arch/net-linux/conv-mach-clustermatic.sh
charm-6.7.1/src/arch/util/
charm-6.7.1/src/arch/util/machine.h
charm-6.7.1/src/arch/util/lz4.h
charm-6.7.1/src/arch/util/zlib-compress.c
charm-6.7.1/src/arch/util/persist-comm.c
charm-6.7.1/src/arch/util/lz4-compress.c
charm-6.7.1/src/arch/util/machine-broadcast.c
charm-6.7.1/src/arch/util/mempool.h
charm-6.7.1/src/arch/util/compress.h
charm-6.7.1/src/arch/util/cmiqueue.h
charm-6.7.1/src/arch/util/machine-smp.c
charm-6.7.1/src/arch/util/machine-xpmem.c
charm-6.7.1/src/arch/util/immediate.c
charm-6.7.1/src/arch/util/machine-common-core.c
charm-6.7.1/src/arch/util/machine-lrts.h
charm-6.7.1/src/arch/util/pcqueue.h
charm-6.7.1/src/arch/util/machine-commthd-util.c
charm-6.7.1/src/arch/util/lz4.c
charm-6.7.1/src/arch/util/compress.c
charm-6.7.1/src/arch/util/machine-smp.h
charm-6.7.1/src/arch/util/compress-external.c
charm-6.7.1/src/arch/util/mempool.c
charm-6.7.1/src/arch/util/machine-pxshm.c
charm-6.7.1/src/arch/shmem-crayxt/
charm-6.7.1/src/arch/shmem-crayxt/charmrun
charm-6.7.1/src/arch/shmem-crayxt/conv-mach.sh
charm-6.7.1/src/arch/shmem-crayxt/conv-mach.h
charm-6.7.1/src/arch/mpi-crayxt/
charm-6.7.1/src/arch/mpi-crayxt/conv-mach.h
charm-6.7.1/src/arch/mpi-crayxt/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-crayxt/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-crayxt/conv-mach.sh
charm-6.7.1/src/arch/lapi/
charm-6.7.1/src/arch/lapi/conv-mach.h
charm-6.7.1/src/arch/lapi/conv-common.h
charm-6.7.1/src/arch/lapi/conv-mach-smp.sh
charm-6.7.1/src/arch/lapi/machine.c
charm-6.7.1/src/arch/lapi/conv-mach-smp.h
charm-6.7.1/src/arch/lapi/cc-mpcc64.h
charm-6.7.1/src/arch/lapi/cc-mpcc64.sh
charm-6.7.1/src/arch/lapi/charmrun
charm-6.7.1/src/arch/lapi/charmrun.ll
charm-6.7.1/src/arch/lapi/conv-mach.sh
charm-6.7.1/src/arch/mpi-darwin-x86_64/
charm-6.7.1/src/arch/mpi-darwin-x86_64/conv-mach.sh
charm-6.7.1/src/arch/mpi-darwin-x86_64/conv-mach.h
charm-6.7.1/src/arch/mpi-darwin-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-darwin-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-sp/
charm-6.7.1/src/arch/mpi-sp/cc-mpcc32.sh
charm-6.7.1/src/arch/mpi-sp/cc-mpcc32.h
charm-6.7.1/src/arch/mpi-sp/conv-mach-uP.h
charm-6.7.1/src/arch/mpi-sp/conv-mach.sh
charm-6.7.1/src/arch/mpi-sp/cc-mpcc64.h
charm-6.7.1/src/arch/mpi-sp/conv-mach-uP.sh
charm-6.7.1/src/arch/mpi-sp/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-sp/charmrun
charm-6.7.1/src/arch/mpi-sp/conv-mach.h
charm-6.7.1/src/arch/mpi-sp/cc-mpcc64.sh
charm-6.7.1/src/arch/mpi-sp/conv-mach-smp.h
charm-6.7.1/src/arch/multicore-arm7/
charm-6.7.1/src/arch/multicore-arm7/conv-mach.h
charm-6.7.1/src/arch/multicore-arm7/conv-mach-cuda.h
charm-6.7.1/src/arch/multicore-arm7/conv-mach-cuda.sh
charm-6.7.1/src/arch/multicore-arm7/conv-mach.sh
charm-6.7.1/src/arch/mpi/
charm-6.7.1/src/arch/mpi/conv-mach-gm.h
charm-6.7.1/src/arch/mpi/conv-common.h
charm-6.7.1/src/arch/mpi/conv-mach-syncft.h
charm-6.7.1/src/arch/mpi/machine-ctrlmsg.c
charm-6.7.1/src/arch/mpi/conv-mach-syncft.sh
charm-6.7.1/src/arch/mpi/conv-common.sh
charm-6.7.1/src/arch/mpi/machine.c
charm-6.7.1/src/arch/mpi/conv-mach-causalft.sh
charm-6.7.1/src/arch/mpi/conv-mach-mpt.h
charm-6.7.1/src/arch/mpi/conv-mach-mlogft.sh
charm-6.7.1/src/arch/mpi/conv-mach-causalft.h
charm-6.7.1/src/arch/mpi/conv-mach-lam.sh
charm-6.7.1/src/arch/mpi/conv-mach-mpt.sh
charm-6.7.1/src/arch/mpi/Makefile.machine
charm-6.7.1/src/arch/mpi/conv-mach-pthreads.h
charm-6.7.1/src/arch/mpi/conv-mach-pthreads.sh
charm-6.7.1/src/arch/mpi/conv-mach-gm.sh
charm-6.7.1/src/arch/mpi/conv-mach-mlogft.h
charm-6.7.1/src/arch/mpi/charmrun
charm-6.7.1/src/arch/mpi/conv-mach-lam.h
charm-6.7.1/src/arch/verbs-linux-x86_64/
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-pedantic.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-clustermatic.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-cuda.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-cuda.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-pxshm.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-pedantic.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-pxshm.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-ibud.sh
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-ibud.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach.h
charm-6.7.1/src/arch/verbs-linux-x86_64/conv-mach-clustermatic.h
charm-6.7.1/src/arch/win64/
charm-6.7.1/src/arch/win64/unix2nt_ar.old
charm-6.7.1/src/arch/win64/unix2nt_cc.old
charm-6.7.1/src/arch/win64/unix2nt_ar
charm-6.7.1/src/arch/win64/unix2nt_cc
charm-6.7.1/src/arch/multicore-aix-ppc/
charm-6.7.1/src/arch/multicore-aix-ppc/cc-xlc64.h
charm-6.7.1/src/arch/multicore-aix-ppc/cc-xlc64.sh
charm-6.7.1/src/arch/multicore-aix-ppc/conv-mach.h
charm-6.7.1/src/arch/multicore-aix-ppc/conv-mach.sh
charm-6.7.1/src/arch/win32/
charm-6.7.1/src/arch/win32/unix2nt_cc
charm-6.7.1/src/arch/win32/createlink.cpp
charm-6.7.1/src/arch/win32/unistd.h
charm-6.7.1/src/arch/win32/unix2nt_ar
charm-6.7.1/src/arch/win32/gatherflat.local
charm-6.7.1/src/arch/win32/system_ln
charm-6.7.1/src/arch/win32/unix2nt_ar.old
charm-6.7.1/src/arch/win32/unix2nt_cc.old
charm-6.7.1/src/arch/win32/gathertree.local
charm-6.7.1/src/arch/win32/conv-autoconfig.h
charm-6.7.1/src/arch/mpi-bluegenep/
charm-6.7.1/src/arch/mpi-bluegenep/charmrun
charm-6.7.1/src/arch/mpi-bluegenep/cc-mpcc.h
charm-6.7.1/src/arch/mpi-bluegenep/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-bluegenep/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-bluegenep/conv-mach.h
charm-6.7.1/src/arch/mpi-bluegenep/cc-mpcc.sh
charm-6.7.1/src/arch/mpi-bluegenep/cc-xlc.sh
charm-6.7.1/src/arch/mpi-bluegenep/conv-mach.sh
charm-6.7.1/src/arch/mpi-bluegenep/cc-xlc.h
charm-6.7.1/src/arch/mpi-linux/
charm-6.7.1/src/arch/mpi-linux/conv-mach.sh
charm-6.7.1/src/arch/mpi-linux/conv-mach-gm.sh
charm-6.7.1/src/arch/mpi-linux/conv-mach.h
charm-6.7.1/src/arch/mpi-linux/conv-mach-gm.h
charm-6.7.1/src/arch/mpi-linux/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-linux/conv-mach-gm2.h
charm-6.7.1/src/arch/mpi-linux/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-linux/conv-mach-scyld.h
charm-6.7.1/src/arch/mpi-linux/conv-mach-scyld.sh
charm-6.7.1/src/arch/mpi-linux/conv-mach-gm2.sh
charm-6.7.1/src/arch/net-cygwin/
charm-6.7.1/src/arch/net-cygwin/conv-mach-mingw.sh
charm-6.7.1/src/arch/net-cygwin/conv-mach-mingw.h
charm-6.7.1/src/arch/net-cygwin/conv-mach-smp.h
charm-6.7.1/src/arch/net-cygwin/conv-mach-smp.sh
charm-6.7.1/src/arch/net-cygwin/conv-mach.h
charm-6.7.1/src/arch/net-cygwin/conv-mach.sh
charm-6.7.1/src/arch/multicore-linux64/
charm-6.7.1/src/arch/multicore-linux64/conv-mach.h
charm-6.7.1/src/arch/multicore-linux64/conv-mach.sh
charm-6.7.1/src/arch/mpi-linux-ppc/
charm-6.7.1/src/arch/mpi-linux-ppc/cc-mpicxx.sh
charm-6.7.1/src/arch/mpi-linux-ppc/conv-mach.sh
charm-6.7.1/src/arch/mpi-linux-ppc/cc-mpicxx.h
charm-6.7.1/src/arch/mpi-linux-ppc/cc-xlc64.h
charm-6.7.1/src/arch/mpi-linux-ppc/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-ppc/cc-xlc64.sh
charm-6.7.1/src/arch/net-linux-x86_64/
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-pedantic.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-ibud.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-ibverbs.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-cuda.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-smp.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-pxshm.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-pxshm.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-ibverbs.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-cuda.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-clustermatic.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-clustermatic.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach.sh
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-sysvshm.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-ibud.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-pedantic.h
charm-6.7.1/src/arch/net-linux-x86_64/conv-mach-sysvshm.sh
charm-6.7.1/src/arch/multicore-linux32/
charm-6.7.1/src/arch/multicore-linux32/conv-mach.sh
charm-6.7.1/src/arch/multicore-linux32/conv-mach.h
charm-6.7.1/src/arch/multicore-darwin-x86/
charm-6.7.1/src/arch/multicore-darwin-x86/conv-mach.sh
charm-6.7.1/src/arch/multicore-darwin-x86/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-mips64/
charm-6.7.1/src/arch/mpi-linux-mips64/conv-mach.h
charm-6.7.1/src/arch/mpi-linux-mips64/conv-mach-smp.h
charm-6.7.1/src/arch/mpi-linux-mips64/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-linux-mips64/conv-mach.sh
charm-6.7.1/src/arch/uth-linux/
charm-6.7.1/src/arch/uth-linux/conv-mach.h
charm-6.7.1/src/arch/uth-linux/conv-mach.sh
charm-6.7.1/src/arch/mpi-crayxc/
charm-6.7.1/src/arch/mpi-crayxc/conv-mach-cuda.sh
charm-6.7.1/src/arch/mpi-crayxc/conv-mach-smp.sh
charm-6.7.1/src/arch/mpi-crayxc/conv-mach.sh
charm-6.7.1/src/arch/mpi-crayxc/conv-mach.h
charm-6.7.1/src/arch/mpi-crayxc/conv-mach-cuda.h
charm-6.7.1/src/arch/mpi-crayxc/conv-mach-smp.h
charm-6.7.1/src/arch/net-linux-cell/
charm-6.7.1/src/arch/net-linux-cell/conv-mach.h
charm-6.7.1/src/arch/net-linux-cell/conv-mach.sh
charm-6.7.1/src/arch/net-linux-cell/special.sh
charm-6.7.1/src/arch/cell/
charm-6.7.1/src/arch/cell/emptyFuncLookup.c
charm-6.7.1/src/arch/cell/cell-api.c
charm-6.7.1/src/arch/cell/cell_lib/
charm-6.7.1/src/arch/cell/cell_lib/spert_common.cpp
charm-6.7.1/src/arch/cell/cell_lib/spert_ppu.cpp
charm-6.7.1/src/arch/cell/cell_lib/spert.h
charm-6.7.1/src/arch/cell/cell_lib/spert_common.h
charm-6.7.1/src/arch/cell/cell_lib/rawToProj.cpp
charm-6.7.1/src/arch/cell/cell_lib/Makefile
charm-6.7.1/src/arch/cell/cell_lib/spert_ppu.h
charm-6.7.1/src/arch/cell/cell_lib/spert.cpp
charm-6.7.1/src/arch/cell/emptyRegisterAccelSPEFuncs.c
charm-6.7.1/src/arch/cell/cell-api.h
charm-6.7.1/src/arch/net-linux-amd64/
charm-6.7.1/src/arch/net-linux-amd64/vdir_link
charm-6.7.1/src/arch/pami-bluegeneq/
charm-6.7.1/src/arch/pami-bluegeneq/conv-mach-smp.sh
charm-6.7.1/src/arch/pami-bluegeneq/L2AtomicQueue.h
charm-6.7.1/src/arch/pami-bluegeneq/cc-gcc.sh
charm-6.7.1/src/arch/pami-bluegeneq/memalloc.c
charm-6.7.1/src/arch/pami-bluegeneq/L2AtomicMutex.h
charm-6.7.1/src/arch/pami-bluegeneq/cc-gcc.h
charm-6.7.1/src/arch/pami-bluegeneq/conv-mach.sh
charm-6.7.1/src/arch/pami-bluegeneq/cc-xlc.sh
charm-6.7.1/src/arch/pami-bluegeneq/conv-mach.h
charm-6.7.1/src/arch/pami-bluegeneq/charmrun
charm-6.7.1/src/arch/pami-bluegeneq/conv-mach-smp.h
charm-6.7.1/src/arch/gni/
charm-6.7.1/src/arch/gni/Makefile.machine
charm-6.7.1/src/arch/gni/conv-mach-papi.sh
charm-6.7.1/src/arch/gni/conv-mach-hugepages.h
charm-6.7.1/src/arch/gni/conv-mach-hugepages.sh
charm-6.7.1/src/arch/gni/conv-mach-syncft.sh
charm-6.7.1/src/arch/gni/conv-common.sh
charm-6.7.1/src/arch/gni/machine-persistent.h
charm-6.7.1/src/arch/gni/conv-mach-papi.h
charm-6.7.1/src/arch/gni/conv-mach-regularpages.sh
charm-6.7.1/src/arch/gni/conv-mach-syncft.h
charm-6.7.1/src/arch/gni/conv-mach-regularpages.h
charm-6.7.1/src/arch/gni/conv-common.h
charm-6.7.1/src/arch/gni/conv-mach-mlogft.h
charm-6.7.1/src/arch/gni/conv-mach-mlogft.sh
charm-6.7.1/src/arch/gni/machine.c
charm-6.7.1/src/arch/gni/machine-cmidirect.c
charm-6.7.1/src/arch/gni/machine-persistent.c
charm-6.7.1/src/arch/pami/
charm-6.7.1/src/arch/pami/conv-mach-async.sh
charm-6.7.1/src/arch/pami/machine.c
charm-6.7.1/src/arch/pami/conv-common.sh
charm-6.7.1/src/arch/pami/conv-mach-async.h
charm-6.7.1/src/arch/pami/Makefile.machine
charm-6.7.1/src/arch/pami/conv-common.h
charm-6.7.1/src/arch/pami/manytomany.c
charm-6.7.1/src/arch/bluegenep/
charm-6.7.1/src/arch/bluegenep/conv-mach.h
charm-6.7.1/src/arch/bluegenep/cc-xlc.sh
charm-6.7.1/src/arch/bluegenep/charmrun
charm-6.7.1/src/arch/bluegenep/conv-mach-smp.h
charm-6.7.1/src/arch/bluegenep/cc-xlc64.sh
charm-6.7.1/src/arch/bluegenep/conv-mach-smp.sh
charm-6.7.1/src/arch/bluegenep/cc-xlc64.h
charm-6.7.1/src/arch/bluegenep/manytomany.c
charm-6.7.1/src/arch/bluegenep/conv-common.h
charm-6.7.1/src/arch/bluegenep/cc-xlc.h
charm-6.7.1/src/arch/bluegenep/machine.c
charm-6.7.1/src/arch/bluegenep/conv-mach.sh
charm-6.7.1/src/arch/bluegenep/Makefile.machine
charm-6.7.1/src/arch/netlrts/
charm-6.7.1/src/arch/netlrts/machine-recover.c
charm-6.7.1/src/arch/netlrts/conv-mach-local.h
charm-6.7.1/src/arch/netlrts/machine-dgram.c
charm-6.7.1/src/arch/netlrts/conv-mach-mlogft.h
charm-6.7.1/src/arch/netlrts/machine.c
charm-6.7.1/src/arch/netlrts/conv-mach-tcp.sh
charm-6.7.1/src/arch/netlrts/conv-mach-causalft.sh
charm-6.7.1/src/arch/netlrts/conv-mach-syncft.sh
charm-6.7.1/src/arch/netlrts/Makefile.machine
charm-6.7.1/src/arch/netlrts/conv-mach-tcp.h
charm-6.7.1/src/arch/netlrts/conv-mach-mlogft.sh
charm-6.7.1/src/arch/netlrts/conv-mach-local.sh
charm-6.7.1/src/arch/netlrts/machine-tcp.c
charm-6.7.1/src/arch/netlrts/conv-mach-causalft.h
charm-6.7.1/src/arch/netlrts/conv-mach-syncft.h
charm-6.7.1/src/arch/netlrts/machine-eth.c
charm-6.7.1/src/arch/netlrts/machine-persistent.c
charm-6.7.1/src/arch/netlrts/conv-common.h
charm-6.7.1/src/util/
charm-6.7.1/src/util/ckimage.C
charm-6.7.1/src/util/XTTorus.h
charm-6.7.1/src/util/cksequence_internal.h
charm-6.7.1/src/util/ckdll_system.C
charm-6.7.1/src/util/set_partition_params.c
charm-6.7.1/src/util/ckstatistics.h
charm-6.7.1/src/util/pup_cmialloc.h
charm-6.7.1/src/util/TopoManager.C
charm-6.7.1/src/util/cmitls.h
charm-6.7.1/src/util/conv-lists.C
charm-6.7.1/src/util/treeStrategy_nodeAware_minBytes.h
charm-6.7.1/src/util/BGQTorus.C
charm-6.7.1/src/util/pup_toNetwork.h
charm-6.7.1/src/util/cmimemcpy_qpx.h
charm-6.7.1/src/util/ckimage.h
charm-6.7.1/src/util/uJcontext.c
charm-6.7.1/src/util/graph.c
charm-6.7.1/src/util/dcopy.h
charm-6.7.1/src/util/custom_partitioner.C
charm-6.7.1/src/util/pup_cmialloc.C
charm-6.7.1/src/util/pup_f.f90
charm-6.7.1/src/util/crc32.c
charm-6.7.1/src/util/sockRoutines.c
charm-6.7.1/src/util/pupf.h
charm-6.7.1/src/util/conv-lists.h
charm-6.7.1/src/util/cksequence.h
charm-6.7.1/src/util/simd.h
charm-6.7.1/src/util/TopoManager.h
charm-6.7.1/src/util/ckvector3d.h
charm-6.7.1/src/util/charmrun-src/
charm-6.7.1/src/util/charmrun-src/daemon.h
charm-6.7.1/src/util/charmrun-src/Makefile
charm-6.7.1/src/util/charmrun-src/daemon.c
charm-6.7.1/src/util/charmrun-src/charmrun.C
charm-6.7.1/src/util/pup_toNetwork.C
charm-6.7.1/src/util/pup_util.C
charm-6.7.1/src/util/BGQTorus.h
charm-6.7.1/src/util/ckBIconfig.h
charm-6.7.1/src/util/spanningTreeStrategy.h
charm-6.7.1/src/util/rand48_replacement.h
charm-6.7.1/src/util/random_sequence.h
charm-6.7.1/src/util/cksequence_factory.h
charm-6.7.1/src/util/treeStrategy_3dTorus_minBytesHops.h
charm-6.7.1/src/util/ckhashtable.C
charm-6.7.1/src/util/ckcomplex.h
charm-6.7.1/src/util/pup.h
charm-6.7.1/src/util/spanningTreeVertex.h
charm-6.7.1/src/util/ckbitvector.h
charm-6.7.1/src/util/ckdll_win32.C
charm-6.7.1/src/util/treeStrategy_3dTorus_minHops.h
charm-6.7.1/src/util/pup_mpi.h
charm-6.7.1/src/util/cmimemcpy_qpx.c
charm-6.7.1/src/util/pup_c.C
charm-6.7.1/src/util/pup_toNetwork4.C
charm-6.7.1/src/util/cmitls.c
charm-6.7.1/src/util/pup_stl.h
charm-6.7.1/src/util/hilbert.C
charm-6.7.1/src/util/pup_xlater.C
charm-6.7.1/src/util/partitioning_strategies.h
charm-6.7.1/src/util/treeStrategy_nodeAware_minGens.h
charm-6.7.1/src/util/BGPTorus.h
charm-6.7.1/src/util/ckdll.C
charm-6.7.1/src/util/SSE-Float.h
charm-6.7.1/src/util/ckstandalone.C
charm-6.7.1/src/util/pup_paged.h
charm-6.7.1/src/util/RTH.C
charm-6.7.1/src/util/ckbitvector.C
charm-6.7.1/src/util/CrayNid.c
charm-6.7.1/src/util/ckhashtable.h
charm-6.7.1/src/util/treeStrategy_topoUnaware.h
charm-6.7.1/src/util/strided_sequence.h
charm-6.7.1/src/util/cmimemcpy.h
charm-6.7.1/src/util/hilbert.h
charm-6.7.1/src/util/cklists.h
charm-6.7.1/src/util/pup_toNetwork4.h
charm-6.7.1/src/util/pup_c.h
charm-6.7.1/src/util/SSE-Double.h
charm-6.7.1/src/util/graph.h
charm-6.7.1/src/util/crc32.h
charm-6.7.1/src/util/ckdll.h
charm-6.7.1/src/util/partitioning_strategies.C
charm-6.7.1/src/util/pup_f.f90.sh
charm-6.7.1/src/util/sockRoutines.h
charm-6.7.1/src/util/vector2d.h
charm-6.7.1/src/util/ckdll_dlopen.C
charm-6.7.1/src/util/RTH.h
charm-6.7.1/src/util/uJcontext.h
charm-6.7.1/src/util/ckliststring.h
charm-6.7.1/src/util/pup_paged.C
charm-6.7.1/src/ck-ldb/
charm-6.7.1/src/ck-ldb/TempAwareCommLB.C
charm-6.7.1/src/ck-ldb/NborBaseLB.C
charm-6.7.1/src/ck-ldb/manager.h
charm-6.7.1/src/ck-ldb/LBOM.h
charm-6.7.1/src/ck-ldb/LBComm.h
charm-6.7.1/src/ck-ldb/GridCommRefineLB.C
charm-6.7.1/src/ck-ldb/LBDatabase.C
charm-6.7.1/src/ck-ldb/BaseLB.C
charm-6.7.1/src/ck-ldb/HybridBaseLB.h
charm-6.7.1/src/ck-ldb/ScotchTopoLB.ci
charm-6.7.1/src/ck-ldb/ScotchTopoLB.C
charm-6.7.1/src/ck-ldb/Make.lb
charm-6.7.1/src/ck-ldb/NullLB.C
charm-6.7.1/src/ck-ldb/NeighborLB.ci
charm-6.7.1/src/ck-ldb/HybridLBMsg.h
charm-6.7.1/src/ck-ldb/GraphBFTLB.h
charm-6.7.1/src/ck-ldb/NeighborCommLB.C
charm-6.7.1/src/ck-ldb/HybridLB.C
charm-6.7.1/src/ck-ldb/RefineTopoLB.C
charm-6.7.1/src/ck-ldb/RecBipartLB.h
charm-6.7.1/src/ck-ldb/GridCommLB.C
charm-6.7.1/src/ck-ldb/RefineLB.C
charm-6.7.1/src/ck-ldb/NodeLevelLB.C
charm-6.7.1/src/ck-ldb/MetaBalancer.C
charm-6.7.1/src/ck-ldb/Refiner.C
charm-6.7.1/src/ck-ldb/GreedyAgentLB.C
charm-6.7.1/src/ck-ldb/GreedyCommLB.h
charm-6.7.1/src/ck-ldb/BlockLB.C
charm-6.7.1/src/ck-ldb/BaseLB.ci
charm-6.7.1/src/ck-ldb/RecBipartLB.ci
charm-6.7.1/src/ck-ldb/ckset.C
charm-6.7.1/src/ck-ldb/RefineKLB.ci
charm-6.7.1/src/ck-ldb/CommLB.h
charm-6.7.1/src/ck-ldb/CommLBHeap.h
charm-6.7.1/src/ck-ldb/GreedyLB.h
charm-6.7.1/src/ck-ldb/LBMachineUtil.C
charm-6.7.1/src/ck-ldb/OrbLB.h
charm-6.7.1/src/ck-ldb/GridHybridLB.ci
charm-6.7.1/src/ck-ldb/RotateLB.h
charm-6.7.1/src/ck-ldb/TempAwareCommLB.ci
charm-6.7.1/src/ck-ldb/HybridBaseLB.ci
charm-6.7.1/src/ck-ldb/GraphPartLB.C
charm-6.7.1/src/ck-ldb/ZoltanLB.ci
charm-6.7.1/src/ck-ldb/LBDatabase.ci
charm-6.7.1/src/ck-ldb/GraphBFTLB.ci
charm-6.7.1/src/ck-ldb/HbmLB.ci
charm-6.7.1/src/ck-ldb/GridMetisLB.ci
charm-6.7.1/src/ck-ldb/Makefile_lb.sh
charm-6.7.1/src/ck-ldb/LButil.C
charm-6.7.1/src/ck-ldb/RefineSwapLB.h
charm-6.7.1/src/ck-ldb/TreeMatchLB.C
charm-6.7.1/src/ck-ldb/bitvecset.h
charm-6.7.1/src/ck-ldb/ScotchTopoLB.h
charm-6.7.1/src/ck-ldb/HybridBaseLB.C
charm-6.7.1/src/ck-ldb/BaseLB.h
charm-6.7.1/src/ck-ldb/NullLB.h
charm-6.7.1/src/ck-ldb/manager.C
charm-6.7.1/src/ck-ldb/LBComm.C
charm-6.7.1/src/ck-ldb/NborBaseLB.h
charm-6.7.1/src/ck-ldb/RefineTopoLB.ci
charm-6.7.1/src/ck-ldb/TempAwareCommLB.h
charm-6.7.1/src/ck-ldb/tm_tree.c
charm-6.7.1/src/ck-ldb/elements.h
charm-6.7.1/src/ck-ldb/LBDatabase.h
charm-6.7.1/src/ck-ldb/CommLB.ci
charm-6.7.1/src/ck-ldb/GridCommRefineLB.h
charm-6.7.1/src/ck-ldb/GridCommLB.h
charm-6.7.1/src/ck-ldb/Refiner.h
charm-6.7.1/src/ck-ldb/MetaBalancer.h
charm-6.7.1/src/ck-ldb/NodeLevelLB.h
charm-6.7.1/src/ck-ldb/RefineLB.h
charm-6.7.1/src/ck-ldb/lbdbf.C
charm-6.7.1/src/ck-ldb/TeamLB.ci
charm-6.7.1/src/ck-ldb/RefineTopoLB.h
charm-6.7.1/src/ck-ldb/RecBipartLB.C
charm-6.7.1/src/ck-ldb/HybridLB.ci
charm-6.7.1/src/ck-ldb/NeighborCommLB.h
charm-6.7.1/src/ck-ldb/GraphBFTLB.C
charm-6.7.1/src/ck-ldb/HybridLB.h
charm-6.7.1/src/ck-ldb/tm_mapping.c
charm-6.7.1/src/ck-ldb/LBMachineUtil.h
charm-6.7.1/src/ck-ldb/GreedyLB.ci
charm-6.7.1/src/ck-ldb/GreedyLB.C
charm-6.7.1/src/ck-ldb/CommLBHeap.C
charm-6.7.1/src/ck-ldb/CommLB.C
charm-6.7.1/src/ck-ldb/RotateLB.C
charm-6.7.1/src/ck-ldb/OrbLB.C
charm-6.7.1/src/ck-ldb/BlockLB.h
charm-6.7.1/src/ck-ldb/GreedyCommLB.C
charm-6.7.1/src/ck-ldb/GreedyAgentLB.h
charm-6.7.1/src/ck-ldb/ckset.h
charm-6.7.1/src/ck-ldb/tm_timings.h
charm-6.7.1/src/ck-ldb/TempAwareRefineLB.ci
charm-6.7.1/src/ck-ldb/TempAwareGreedyLB.ci
charm-6.7.1/src/ck-ldb/TreeMatchLB.h
charm-6.7.1/src/ck-ldb/DummyLB.ci
charm-6.7.1/src/ck-ldb/RefineSwapLB.C
charm-6.7.1/src/ck-ldb/AdaptiveLB.ci
charm-6.7.1/src/ck-ldb/NullLB.ci
charm-6.7.1/src/ck-ldb/GraphPartLB.h
charm-6.7.1/src/ck-ldb/EveryLB.C
charm-6.7.1/src/ck-ldb/GridCommLB.ci
charm-6.7.1/src/ck-ldb/libmoduleMetisLB.dep
charm-6.7.1/src/ck-ldb/tm_bucket.h
charm-6.7.1/src/ck-ldb/RefineLB.ci
charm-6.7.1/src/ck-ldb/libmoduleTeamLB.dep
charm-6.7.1/src/ck-ldb/GreedyAgentLB.ci
charm-6.7.1/src/ck-ldb/MetaBalancer.ci
charm-6.7.1/src/ck-ldb/DistBaseLB.h
charm-6.7.1/src/ck-ldb/TopoLB.h
charm-6.7.1/src/ck-ldb/TeamLB.C
charm-6.7.1/src/ck-ldb/RefinerComm.C
charm-6.7.1/src/ck-ldb/CentralLBMsg.h
charm-6.7.1/src/ck-ldb/CommAwareRefineLB.h
charm-6.7.1/src/ck-ldb/CentralLB.C
charm-6.7.1/src/ck-ldb/ScotchRefineLB.ci
charm-6.7.1/src/ck-ldb/HbmLB.C
charm-6.7.1/src/ck-ldb/LBProfit.h
charm-6.7.1/src/ck-ldb/ckheap.C
charm-6.7.1/src/ck-ldb/DistBaseLB.ci
charm-6.7.1/src/ck-ldb/CentralLB.ci
charm-6.7.1/src/ck-ldb/ScotchLB.h
charm-6.7.1/src/ck-ldb/MetisLB.ci
charm-6.7.1/src/ck-ldb/lbdb++.h
charm-6.7.1/src/ck-ldb/RefinerApprox.h
charm-6.7.1/src/ck-ldb/bitvecset.c
charm-6.7.1/src/ck-ldb/OrbLB.ci
charm-6.7.1/src/ck-ldb/ComboCentLB.h
charm-6.7.1/src/ck-ldb/ZoltanLB.h
charm-6.7.1/src/ck-ldb/RandCentLB.ci
charm-6.7.1/src/ck-ldb/WSLB.C
charm-6.7.1/src/ck-ldb/ObjGraph.C
charm-6.7.1/src/ck-ldb/NborBaseLB.ci
charm-6.7.1/src/ck-ldb/GridMetisLB.C
charm-6.7.1/src/ck-ldb/GridHybridSeedLB.h
charm-6.7.1/src/ck-ldb/libmoduleGridMetisLB.dep
charm-6.7.1/src/ck-ldb/GraphPartLB.ci
charm-6.7.1/src/ck-ldb/AdaptiveLB.h
charm-6.7.1/src/ck-ldb/LBSimulation.h
charm-6.7.1/src/ck-ldb/TopoLB.ci
charm-6.7.1/src/ck-ldb/lbdb.C
charm-6.7.1/src/ck-ldb/LBDBManager.C
charm-6.7.1/src/ck-ldb/ckgraph.h
charm-6.7.1/src/ck-ldb/RefineCommLB.ci
charm-6.7.1/src/ck-ldb/TempAwareGreedyLB.h
charm-6.7.1/src/ck-ldb/PhasebyArrayLB.C
charm-6.7.1/src/ck-ldb/BlockLB.ci
charm-6.7.1/src/ck-ldb/LBAgent.h
charm-6.7.1/src/ck-ldb/DistributedLB.ci
charm-6.7.1/src/ck-ldb/CommAwareRefineLB.ci
charm-6.7.1/src/ck-ldb/ScotchRefineLB.h
charm-6.7.1/src/ck-ldb/ComboCentLB.ci
charm-6.7.1/src/ck-ldb/RefineSwapLB.ci
charm-6.7.1/src/ck-ldb/MetisLB.C
charm-6.7.1/src/ck-ldb/GridHybridLB.C
charm-6.7.1/src/ck-ldb/RecBisectBfLB.h
charm-6.7.1/src/ck-ldb/RandCentLB.h
charm-6.7.1/src/ck-ldb/TempAwareRefineLB.C
charm-6.7.1/src/ck-ldb/TopoCentLB.h
charm-6.7.1/src/ck-ldb/DummyLB.C
charm-6.7.1/src/ck-ldb/libmoduleScotchLB.dep
charm-6.7.1/src/ck-ldb/NeighborLB.h
charm-6.7.1/src/ck-ldb/TopoCentLB.ci
charm-6.7.1/src/ck-ldb/RefineKLB.h
charm-6.7.1/src/ck-ldb/CentralPredictor.C
charm-6.7.1/src/ck-ldb/PhasebyArrayLB.ci
charm-6.7.1/src/ck-ldb/GridHybridSeedLB.ci
charm-6.7.1/src/ck-ldb/RefinerTemp.h
charm-6.7.1/src/ck-ldb/DistributedLB.h
charm-6.7.1/src/ck-ldb/ScotchLB.ci
charm-6.7.1/src/ck-ldb/RefineCommLB.C
charm-6.7.1/src/ck-ldb/ckgraphTemp.h
charm-6.7.1/src/ck-ldb/LBObj.C
charm-6.7.1/src/ck-ldb/RefinerApprox.C
charm-6.7.1/src/ck-ldb/ScotchLB.C
charm-6.7.1/src/ck-ldb/LBProfit.C
charm-6.7.1/src/ck-ldb/HbmLB.h
charm-6.7.1/src/ck-ldb/RecBisectBfLB.ci
charm-6.7.1/src/ck-ldb/ckheap.h
charm-6.7.1/src/ck-ldb/ComboCentLB.C
charm-6.7.1/src/ck-ldb/libmoduleRefineCommLB.dep
charm-6.7.1/src/ck-ldb/TeamLB.h
charm-6.7.1/src/ck-ldb/TopoLB.C
charm-6.7.1/src/ck-ldb/DistBaseLB.C
charm-6.7.1/src/ck-ldb/tm_bucket.c
charm-6.7.1/src/ck-ldb/CentralLB.h
charm-6.7.1/src/ck-ldb/RefinerComm.h
charm-6.7.1/src/ck-ldb/TreeMatchLB.ci
charm-6.7.1/src/ck-ldb/CommAwareRefineLB.C
charm-6.7.1/src/ck-ldb/LBDBManager.h
charm-6.7.1/src/ck-ldb/NodeLevelLB.ci
charm-6.7.1/src/ck-ldb/lbdb.h
charm-6.7.1/src/ck-ldb/PhasebyArrayLB.h
charm-6.7.1/src/ck-ldb/TempAwareGreedyLB.C
charm-6.7.1/src/ck-ldb/ckgraph.C
charm-6.7.1/src/ck-ldb/ObjGraph.h
charm-6.7.1/src/ck-ldb/WSLB.h
charm-6.7.1/src/ck-ldb/ZoltanLB.C
charm-6.7.1/src/ck-ldb/AdaptiveLB.C
charm-6.7.1/src/ck-ldb/LBSimulation.C
charm-6.7.1/src/ck-ldb/tm_timings.c
charm-6.7.1/src/ck-ldb/GridMetisLB.h
charm-6.7.1/src/ck-ldb/CommonLBs.C
charm-6.7.1/src/ck-ldb/GridHybridSeedLB.C
charm-6.7.1/src/ck-ldb/GreedyCommLB.ci
charm-6.7.1/src/ck-ldb/CommonLBs.ci
charm-6.7.1/src/ck-ldb/GridCommRefineLB.ci
charm-6.7.1/src/ck-ldb/TempAwareRefineLB.h
charm-6.7.1/src/ck-ldb/TopoCentLB.C
charm-6.7.1/src/ck-ldb/DummyLB.h
charm-6.7.1/src/ck-ldb/EveryLB.ci
charm-6.7.1/src/ck-ldb/NeighborLBMsg.h
charm-6.7.1/src/ck-ldb/ScotchRefineLB.C
charm-6.7.1/src/ck-ldb/LBAgent.C
charm-6.7.1/src/ck-ldb/RandCentLB.C
charm-6.7.1/src/ck-ldb/RecBisectBfLB.C
charm-6.7.1/src/ck-ldb/MetisLB.h
charm-6.7.1/src/ck-ldb/GridHybridLB.h
charm-6.7.1/src/ck-ldb/tm_mapping.h
charm-6.7.1/src/ck-ldb/DistributedLB.C
charm-6.7.1/src/ck-ldb/RefinerTemp.C
charm-6.7.1/src/ck-ldb/RotateLB.ci
charm-6.7.1/src/ck-ldb/LBObj.h
charm-6.7.1/src/ck-ldb/RefineCommLB.h
charm-6.7.1/src/ck-ldb/ckgraphTemp.C
charm-6.7.1/src/ck-ldb/RefineKLB.C
charm-6.7.1/src/ck-ldb/NeighborLB.C
charm-6.7.1/src/ck-ldb/WSLB.ci
charm-6.7.1/src/ck-ldb/tm_tree.h
charm-6.7.1/src/ck-ldb/NeighborCommLB.ci
charm-6.7.1/src/xlat-i/
charm-6.7.1/src/xlat-i/xi-symbol.h
charm-6.7.1/src/xlat-i/xi-Type.C
charm-6.7.1/src/xlat-i/xi-SdagConstruct.h
charm-6.7.1/src/xlat-i/xi-BlockConstruct.h
charm-6.7.1/src/xlat-i/xi-Message.h
charm-6.7.1/src/xlat-i/xi-scan.l
charm-6.7.1/src/xlat-i/xi-Module.C
charm-6.7.1/src/xlat-i/xi-Template.C
charm-6.7.1/src/xlat-i/xi.makefile
charm-6.7.1/src/xlat-i/xi-scan.C
charm-6.7.1/src/xlat-i/xi-Construct.h
charm-6.7.1/src/xlat-i/xi-Parameter.h
charm-6.7.1/src/xlat-i/xi-Chare.C
charm-6.7.1/src/xlat-i/xi-Entry.h
charm-6.7.1/src/xlat-i/xi-Type.h
charm-6.7.1/src/xlat-i/xi-symbol.C
charm-6.7.1/src/xlat-i/xi-Template.h
charm-6.7.1/src/xlat-i/xi-Module.h
charm-6.7.1/src/xlat-i/xi-SdagConstruct.C
charm-6.7.1/src/xlat-i/xi-BlockConstruct.C
charm-6.7.1/src/xlat-i/xi-Message.C
charm-6.7.1/src/xlat-i/xi-Construct.C
charm-6.7.1/src/xlat-i/xi-Entry.C
charm-6.7.1/src/xlat-i/xi-Chare.h
charm-6.7.1/src/xlat-i/xi-Parameter.C
charm-6.7.1/src/xlat-i/xi-util.h
charm-6.7.1/src/xlat-i/sdag/
charm-6.7.1/src/xlat-i/sdag/constructs/
charm-6.7.1/src/xlat-i/sdag/constructs/SList.h
charm-6.7.1/src/xlat-i/sdag/constructs/Atomic.h
charm-6.7.1/src/xlat-i/sdag/constructs/CaseList.C
charm-6.7.1/src/xlat-i/sdag/constructs/While.h
charm-6.7.1/src/xlat-i/sdag/constructs/Template.h
charm-6.7.1/src/xlat-i/sdag/constructs/SList.C
charm-6.7.1/src/xlat-i/sdag/constructs/CaseList.h
charm-6.7.1/src/xlat-i/sdag/constructs/Atomic.C
charm-6.7.1/src/xlat-i/sdag/constructs/Template.C
charm-6.7.1/src/xlat-i/sdag/constructs/While.C
charm-6.7.1/src/xlat-i/sdag/constructs/OList.h
charm-6.7.1/src/xlat-i/sdag/constructs/Else.h
charm-6.7.1/src/xlat-i/sdag/constructs/If.h
charm-6.7.1/src/xlat-i/sdag/constructs/SdagEntry.h
charm-6.7.1/src/xlat-i/sdag/constructs/When.C
charm-6.7.1/src/xlat-i/sdag/constructs/IntExpr.C
charm-6.7.1/src/xlat-i/sdag/constructs/Forall.C
charm-6.7.1/src/xlat-i/sdag/constructs/Case.h
charm-6.7.1/src/xlat-i/sdag/constructs/Overlap.h
charm-6.7.1/src/xlat-i/sdag/constructs/For.h
charm-6.7.1/src/xlat-i/sdag/constructs/Else.C
charm-6.7.1/src/xlat-i/sdag/constructs/If.C
charm-6.7.1/src/xlat-i/sdag/constructs/OList.C
charm-6.7.1/src/xlat-i/sdag/constructs/When.h
charm-6.7.1/src/xlat-i/sdag/constructs/IntExpr.h
charm-6.7.1/src/xlat-i/sdag/constructs/Constructs.h
charm-6.7.1/src/xlat-i/sdag/constructs/SdagEntry.C
charm-6.7.1/src/xlat-i/sdag/constructs/Forall.h
charm-6.7.1/src/xlat-i/sdag/constructs/For.C
charm-6.7.1/src/xlat-i/sdag/constructs/Overlap.C
charm-6.7.1/src/xlat-i/sdag/constructs/Case.C
charm-6.7.1/src/xlat-i/sdag/CParsedFile.C
charm-6.7.1/src/xlat-i/sdag/CSdagConstruct.C
charm-6.7.1/src/xlat-i/sdag/CParsedFile.h
charm-6.7.1/src/xlat-i/sdag/example.txt
charm-6.7.1/src/xlat-i/sdag/CStateVar.C
charm-6.7.1/src/xlat-i/sdag/sdag-globals.C
charm-6.7.1/src/xlat-i/sdag/EToken.h
charm-6.7.1/src/xlat-i/sdag/CEntry.h
charm-6.7.1/src/xlat-i/sdag/grammar.txt
charm-6.7.1/src/xlat-i/sdag/sdag-globals.h
charm-6.7.1/src/xlat-i/sdag/CStateVar.h
charm-6.7.1/src/xlat-i/sdag/CEntry.C
charm-6.7.1/src/xlat-i/sdag/CToken.h
charm-6.7.1/src/xlat-i/xi-main.h
charm-6.7.1/src/xlat-i/xi-grammar.tab.C
charm-6.7.1/src/xlat-i/xi-Member.C
charm-6.7.1/src/xlat-i/xi-SdagCollection.h
charm-6.7.1/src/xlat-i/xi-Value.h
charm-6.7.1/src/xlat-i/xi-AstNode.h
charm-6.7.1/src/xlat-i/xi-util.C
charm-6.7.1/src/xlat-i/xi-grammar.tab.h
charm-6.7.1/src/xlat-i/xi-main.C
charm-6.7.1/src/xlat-i/xi-Member.h
charm-6.7.1/src/xlat-i/xi-SdagCollection.C
charm-6.7.1/src/xlat-i/xi-AstNode.C
charm-6.7.1/src/xlat-i/xi-grammar.y
charm-6.7.1/src/xlat-i/xi-Value.C
charm-6.7.1/README.win
charm-6.7.1/charm.spec
charm-6.7.1/tests/
charm-6.7.1/tests/ampi/
charm-6.7.1/tests/ampi/megampi/
charm-6.7.1/tests/ampi/megampi/Makefile
charm-6.7.1/tests/ampi/megampi/test.C
charm-6.7.1/tests/ampi/stacksize/
charm-6.7.1/tests/ampi/stacksize/Makefile
charm-6.7.1/tests/ampi/stacksize/test.c
charm-6.7.1/tests/ampi/speed/
charm-6.7.1/tests/ampi/speed/hello.C
charm-6.7.1/tests/ampi/speed/test_mpi.c
charm-6.7.1/tests/ampi/speed/msgspeed.c
charm-6.7.1/tests/ampi/speed/hello.ci
charm-6.7.1/tests/ampi/speed/msgspeed.h
charm-6.7.1/tests/ampi/speed/Makefile
charm-6.7.1/tests/ampi/speed/standalone_mpi.c
charm-6.7.1/tests/ampi/fallreduce/
charm-6.7.1/tests/ampi/fallreduce/Makefile
charm-6.7.1/tests/ampi/fallreduce/pgm.f90
charm-6.7.1/tests/ampi/chkpt/
charm-6.7.1/tests/ampi/chkpt/hello.c
charm-6.7.1/tests/ampi/chkpt/Makefile
charm-6.7.1/tests/ampi/migration/
charm-6.7.1/tests/ampi/migration/test.C
charm-6.7.1/tests/ampi/migration/Makefile
charm-6.7.1/tests/ampi/jacobi3d/
charm-6.7.1/tests/ampi/jacobi3d/jacobi.C
charm-6.7.1/tests/ampi/jacobi3d/kill_01.txt
charm-6.7.1/tests/ampi/jacobi3d/kill_02.txt
charm-6.7.1/tests/ampi/jacobi3d/Makefile
charm-6.7.1/tests/ampi/Makefile
charm-6.7.1/tests/ampi/mpich-test/
charm-6.7.1/tests/ampi/mpich-test/sendchar.c
charm-6.7.1/tests/ampi/mpich-test/runbase
charm-6.7.1/tests/ampi/mpich-test/README
charm-6.7.1/tests/ampi/mpich-test/topol/
charm-6.7.1/tests/ampi/mpich-test/topol/cartorder.c
charm-6.7.1/tests/ampi/mpich-test/topol/cart.c
charm-6.7.1/tests/ampi/mpich-test/topol/test.c
charm-6.7.1/tests/ampi/mpich-test/topol/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/topol/cartc.f90
charm-6.7.1/tests/ampi/mpich-test/topol/cartmap.c
charm-6.7.1/tests/ampi/mpich-test/topol/cartf.f
charm-6.7.1/tests/ampi/mpich-test/topol/Makefile
charm-6.7.1/tests/ampi/mpich-test/topol/twod.f
charm-6.7.1/tests/ampi/mpich-test/topol/runtests
charm-6.7.1/tests/ampi/mpich-test/topol/runtests.in
charm-6.7.1/tests/ampi/mpich-test/topol/cart2f.f
charm-6.7.1/tests/ampi/mpich-test/topol/graphtest.c
charm-6.7.1/tests/ampi/mpich-test/topol/cartmap.std
charm-6.7.1/tests/ampi/mpich-test/topol/cart1f.f
charm-6.7.1/tests/ampi/mpich-test/topol/cartf.std
charm-6.7.1/tests/ampi/mpich-test/topol/twod2.f
charm-6.7.1/tests/ampi/mpich-test/topol/cart2.c
charm-6.7.1/tests/ampi/mpich-test/topol/dims.c
charm-6.7.1/tests/ampi/mpich-test/topol/test.h
charm-6.7.1/tests/ampi/mpich-test/topol/graphtest.std
charm-6.7.1/tests/ampi/mpich-test/sendstruct.c
charm-6.7.1/tests/ampi/mpich-test/env/
charm-6.7.1/tests/ampi/mpich-test/env/aborttest.std
charm-6.7.1/tests/ampi/mpich-test/env/runtests
charm-6.7.1/tests/ampi/mpich-test/env/errhandf.f
charm-6.7.1/tests/ampi/mpich-test/env/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/env/gtime.c
charm-6.7.1/tests/ampi/mpich-test/env/argstest.c
charm-6.7.1/tests/ampi/mpich-test/env/init.c
charm-6.7.1/tests/ampi/mpich-test/env/getproc.c
charm-6.7.1/tests/ampi/mpich-test/env/test.c
charm-6.7.1/tests/ampi/mpich-test/env/cmdline.c
charm-6.7.1/tests/ampi/mpich-test/env/timertest.c
charm-6.7.1/tests/ampi/mpich-test/env/errstringsf.std
charm-6.7.1/tests/ampi/mpich-test/env/errhand2.c
charm-6.7.1/tests/ampi/mpich-test/env/baseattr.c
charm-6.7.1/tests/ampi/mpich-test/env/hang.c
charm-6.7.1/tests/ampi/mpich-test/env/errstringsf.f
charm-6.7.1/tests/ampi/mpich-test/env/getprocf.f
charm-6.7.1/tests/ampi/mpich-test/env/baseattrf.f
charm-6.7.1/tests/ampi/mpich-test/env/testerr.c
charm-6.7.1/tests/ampi/mpich-test/env/env.std
charm-6.7.1/tests/ampi/mpich-test/env/runtests.in
charm-6.7.1/tests/ampi/mpich-test/env/test.h
charm-6.7.1/tests/ampi/mpich-test/env/sigchk.c
charm-6.7.1/tests/ampi/mpich-test/env/Makefile
charm-6.7.1/tests/ampi/mpich-test/env/errhand.c
charm-6.7.1/tests/ampi/mpich-test/env/timers.c
charm-6.7.1/tests/ampi/mpich-test/env/aborttest.c
charm-6.7.1/tests/ampi/mpich-test/tarch
charm-6.7.1/tests/ampi/mpich-test/er.xsl
charm-6.7.1/tests/ampi/mpich-test/command/
charm-6.7.1/tests/ampi/mpich-test/command/runtests
charm-6.7.1/tests/ampi/mpich-test/command/runtests.in
charm-6.7.1/tests/ampi/mpich-test/command/README
charm-6.7.1/tests/ampi/mpich-test/sendvector.c
charm-6.7.1/tests/ampi/mpich-test/configure.in
charm-6.7.1/tests/ampi/mpich-test/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/Makefile
charm-6.7.1/tests/ampi/mpich-test/configure
charm-6.7.1/tests/ampi/mpich-test/coll/
charm-6.7.1/tests/ampi/mpich-test/coll/Makefile
charm-6.7.1/tests/ampi/mpich-test/coll/allred.c
charm-6.7.1/tests/ampi/mpich-test/coll/bcastbug2.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll1.c
charm-6.7.1/tests/ampi/mpich-test/coll/bcastvec.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll11.c
charm-6.7.1/tests/ampi/mpich-test/coll/scattern.c
charm-6.7.1/tests/ampi/mpich-test/coll/nbcoll.c
charm-6.7.1/tests/ampi/mpich-test/coll/allredmany.std
charm-6.7.1/tests/ampi/mpich-test/coll/coll10.c
charm-6.7.1/tests/ampi/mpich-test/coll/test.h
charm-6.7.1/tests/ampi/mpich-test/coll/allred2.c
charm-6.7.1/tests/ampi/mpich-test/coll/shortint.c
charm-6.7.1/tests/ampi/mpich-test/coll/bcast2.f
charm-6.7.1/tests/ampi/mpich-test/coll/coll2.c
charm-6.7.1/tests/ampi/mpich-test/coll/scatterv.std
charm-6.7.1/tests/ampi/mpich-test/coll/longuser.c
charm-6.7.1/tests/ampi/mpich-test/coll/redtst.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll12.c
charm-6.7.1/tests/ampi/mpich-test/coll/allredmany.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll8.c
charm-6.7.1/tests/ampi/mpich-test/coll/temprun
charm-6.7.1/tests/ampi/mpich-test/coll/coll9.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll13.c
charm-6.7.1/tests/ampi/mpich-test/coll/.cvsignore
charm-6.7.1/tests/ampi/mpich-test/coll/allgatherf.f
charm-6.7.1/tests/ampi/mpich-test/coll/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/coll/coll3.c
charm-6.7.1/tests/ampi/mpich-test/coll/barrier.c
charm-6.7.1/tests/ampi/mpich-test/coll/runtests.in
charm-6.7.1/tests/ampi/mpich-test/coll/assocf.f
charm-6.7.1/tests/ampi/mpich-test/coll/coll7.c
charm-6.7.1/tests/ampi/mpich-test/coll/scantst.c
charm-6.7.1/tests/ampi/mpich-test/coll/test.c
charm-6.7.1/tests/ampi/mpich-test/coll/scatterv.c
charm-6.7.1/tests/ampi/mpich-test/coll/bcastlog.f
charm-6.7.1/tests/ampi/mpich-test/coll/coll6.c
charm-6.7.1/tests/ampi/mpich-test/coll/allredf.std
charm-6.7.1/tests/ampi/mpich-test/coll/bcast.c
charm-6.7.1/tests/ampi/mpich-test/coll/allredf.f
charm-6.7.1/tests/ampi/mpich-test/coll/coll4.c
charm-6.7.1/tests/ampi/mpich-test/coll/grouptest.c
charm-6.7.1/tests/ampi/mpich-test/coll/redscat.c
charm-6.7.1/tests/ampi/mpich-test/coll/bcastbug.c
charm-6.7.1/tests/ampi/mpich-test/coll/alltoallv.c
charm-6.7.1/tests/ampi/mpich-test/coll/coll5.c
charm-6.7.1/tests/ampi/mpich-test/coll/runtests
charm-6.7.1/tests/ampi/mpich-test/profile/
charm-6.7.1/tests/ampi/mpich-test/profile/ptest.c
charm-6.7.1/tests/ampi/mpich-test/profile/runtests
charm-6.7.1/tests/ampi/mpich-test/profile/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/profile/runtests.in
charm-6.7.1/tests/ampi/mpich-test/profile/Makefile
charm-6.7.1/tests/ampi/mpich-test/profile/colluses.c
charm-6.7.1/tests/ampi/mpich-test/profile/ptest.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hvectest2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/allpair2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/flood2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/selfvsworld.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nbtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/structf.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typebase.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/dtypes.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendrecv3.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/structf.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persist.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/testtypes.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/allpair.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/gcomm.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nbtest.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall3.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/issend2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sndrcvrep.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendrecv.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/relrank.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/bsendtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendrecv2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/self.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/fairnessm.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/fairness.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/fairness2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/README
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/fairness2m.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fairness/fairness-euih.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/pack.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/self.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub3.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hindexed.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sixth.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/isndrcv.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/ssendtest2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/README
charm-6.7.1/tests/ampi/mpich-test/pt2pt/systest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancel.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendorder.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/dataalign.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/pingpong.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nblock.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancelibm.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/dtypelife.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/testall.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/longmsgs.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typebase.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancel2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/trunc.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/overtake.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typecreate.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendmany.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/reqcreate.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fourth.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persistent.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persist2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hvectest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendorder.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancel3.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sndrcv.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendfort.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/Makefile
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typebasef.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/isendtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typecreate.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/test.h
charm-6.7.1/tests/ampi/mpich-test/pt2pt/truncmult.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/pack.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancelmessages.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/ssendtest2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nullproc2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hvec.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/irsend.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/send1.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/probe.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitany.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/testsome.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/runtests
charm-6.7.1/tests/ampi/mpich-test/pt2pt/third.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typetest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall4.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nullproc.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendcplx.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/fifth.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/dtypes.h
charm-6.7.1/tests/ampi/mpich-test/pt2pt/probe1.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nullproc.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendrecv4.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/allpair.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/exittest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/reqcreate.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/gcomm.h
charm-6.7.1/tests/ampi/mpich-test/pt2pt/cancelissend.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/dtyperecv.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/ssendtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/reqfree.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sndrcvrpl2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/secondf.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persist.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/test.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/issendinit.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sendmany.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/isndrcv2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/testtest1.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/flood.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/irsendinit.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nblock.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persistent.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/getelm.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/htmsg.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/allpair2.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/systest1.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typelb.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/pt2pt/structlb.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitany.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/issendtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/nullproc2.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hvec.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/hindexed.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/sndrcvrep.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/waitall.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/order.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/irecvtest.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/persist2.std
charm-6.7.1/tests/ampi/mpich-test/pt2pt/commit.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/typeub3.c
charm-6.7.1/tests/ampi/mpich-test/pt2pt/isendf.f
charm-6.7.1/tests/ampi/mpich-test/pt2pt/selfvsworld.c
charm-6.7.1/tests/ampi/mpich-test/testhetero
charm-6.7.1/tests/ampi/mpich-test/context/
charm-6.7.1/tests/ampi/mpich-test/context/groupcreate.c
charm-6.7.1/tests/ampi/mpich-test/context/attrerr.std
charm-6.7.1/tests/ampi/mpich-test/context/test.c
charm-6.7.1/tests/ampi/mpich-test/context/commnamesf.f
charm-6.7.1/tests/ampi/mpich-test/context/attrerr.c
charm-6.7.1/tests/ampi/mpich-test/context/Makefile
charm-6.7.1/tests/ampi/mpich-test/context/commnames.std
charm-6.7.1/tests/ampi/mpich-test/context/ictest3.c
charm-6.7.1/tests/ampi/mpich-test/context/Makefile.in
charm-6.7.1/tests/ampi/mpich-test/context/ictest2.c
charm-6.7.1/tests/ampi/mpich-test/context/test.h
charm-6.7.1/tests/ampi/mpich-test/context/context.std
charm-6.7.1/tests/ampi/mpich-test/context/runtests.in
charm-6.7.1/tests/ampi/mpich-test/context/attrt.c
charm-6.7.1/tests/ampi/mpich-test/context/runtests
charm-6.7.1/tests/ampi/mpich-test/context/attrtest.f
charm-6.7.1/tests/ampi/mpich-test/context/ictest.c
charm-6.7.1/tests/ampi/mpich-test/context/grouptest.c
charm-6.7.1/tests/ampi/mpich-test/context/icdup.c
charm-6.7.1/tests/ampi/mpich-test/context/attrt.std
charm-6.7.1/tests/ampi/mpich-test/context/commnames.c
charm-6.7.1/tests/ampi/mpich-test/sendshort.c
charm-6.7.1/tests/ampi/mpich-test/f90tests
charm-6.7.1/tests/ampi/mpich-test/sendlogc.f
charm-6.7.1/tests/util/
charm-6.7.1/tests/util/Makefile
charm-6.7.1/tests/util/check.C
charm-6.7.1/tests/util/headerpad.ci
charm-6.7.1/tests/util/headerpad.C
charm-6.7.1/tests/util/headerpad.h
charm-6.7.1/tests/fem/
charm-6.7.1/tests/fem/megafem/
charm-6.7.1/tests/fem/megafem/test_globals.tst
charm-6.7.1/tests/fem/megafem/ctests.C
charm-6.7.1/tests/fem/megafem/ftests.F90
charm-6.7.1/tests/fem/megafem/test.tst
charm-6.7.1/tests/fem/megafem/ctests.h
charm-6.7.1/tests/fem/megafem/test_assert.tst
charm-6.7.1/tests/fem/megafem/ftestMod.F90
charm-6.7.1/tests/fem/megafem/test_idxl_get.tst
charm-6.7.1/tests/fem/megafem/pgm.C
charm-6.7.1/tests/fem/megafem/c_tst.h
charm-6.7.1/tests/fem/megafem/f90_tst.h
charm-6.7.1/tests/fem/megafem/ftests_fallback.C
charm-6.7.1/tests/fem/megafem/Makefile
charm-6.7.1/tests/fem/femtest/
charm-6.7.1/tests/fem/femtest/pgm.C
charm-6.7.1/tests/fem/femtest/serial_fpgm.f90
charm-6.7.1/tests/fem/femtest/fmesh.dat
charm-6.7.1/tests/fem/femtest/cmesh.dat
charm-6.7.1/tests/fem/femtest/fpgm.f90
charm-6.7.1/tests/fem/femtest/Makefile
charm-6.7.1/tests/fem/Makefile
charm-6.7.1/tests/converse/
charm-6.7.1/tests/converse/Makefile
charm-6.7.1/tests/converse/cthtest/
charm-6.7.1/tests/converse/cthtest/Makefile
charm-6.7.1/tests/converse/cthtest/pgm.C
charm-6.7.1/tests/converse/megacon/
charm-6.7.1/tests/converse/megacon/megacon.c
charm-6.7.1/tests/converse/megacon/multisend.c
charm-6.7.1/tests/converse/megacon/README
charm-6.7.1/tests/converse/megacon/handler.c
charm-6.7.1/tests/converse/megacon/deadlock.c
charm-6.7.1/tests/converse/megacon/nodenum.c
charm-6.7.1/tests/converse/megacon/vars.c
charm-6.7.1/tests/converse/megacon/future.c
charm-6.7.1/tests/converse/megacon/blkinhand.c
charm-6.7.1/tests/converse/megacon/Makefile
charm-6.7.1/tests/converse/megacon/ringsimple.c
charm-6.7.1/tests/converse/megacon/multicast.c
charm-6.7.1/tests/converse/megacon/reduction.c
charm-6.7.1/tests/converse/megacon/priotest.c
charm-6.7.1/tests/converse/megacon/fibobj.c
charm-6.7.1/tests/converse/megacon/broadc.c
charm-6.7.1/tests/converse/megacon/bigmsg.c
charm-6.7.1/tests/converse/megacon/fibthr.c
charm-6.7.1/tests/converse/megacon/ring.c
charm-6.7.1/tests/converse/megacon/Makefile.win32
charm-6.7.1/tests/converse/megacon/posixth.c
charm-6.7.1/tests/converse/megacon/specmsg.c
charm-6.7.1/tests/converse/megacon/vecsend.c
charm-6.7.1/tests/converse/machinetest/
charm-6.7.1/tests/converse/machinetest/pingall.C
charm-6.7.1/tests/converse/machinetest/Makefile
charm-6.7.1/tests/converse/machinetest/multiping.C
charm-6.7.1/tests/converse/commbench/
charm-6.7.1/tests/converse/commbench/broadcast.c
charm-6.7.1/tests/converse/commbench/timer.c
charm-6.7.1/tests/converse/commbench/commbench.h
charm-6.7.1/tests/converse/commbench/smputil.c
charm-6.7.1/tests/converse/commbench/Makefile
charm-6.7.1/tests/converse/commbench/proc.c
charm-6.7.1/tests/converse/commbench/pingpong.c
charm-6.7.1/tests/converse/commbench/memoryAccess.c
charm-6.7.1/tests/converse/commbench/Makefile.win32
charm-6.7.1/tests/converse/commbench/flood.c
charm-6.7.1/tests/converse/commbench/commbench.c
charm-6.7.1/tests/converse/commbench/overhead.c
charm-6.7.1/tests/converse/commbench/ctxt.c
charm-6.7.1/tests/converse/commbench/reduction.c
charm-6.7.1/tests/converse/commbench/pingpong-cachemiss.c
charm-6.7.1/tests/common.mk
charm-6.7.1/tests/charm++/
charm-6.7.1/tests/charm++/communication_overhead/
charm-6.7.1/tests/charm++/communication_overhead/Makefile
charm-6.7.1/tests/charm++/communication_overhead/overhead_test.C
charm-6.7.1/tests/charm++/communication_overhead/overhead_test.ci
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/README
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/ckAllocSysMsgTest.ci
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/Makefile
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/ckAllocSysMsgTest.C
charm-6.7.1/tests/charm++/ckAllocSysMsgTest/ckAllocSysMsgTest.h
charm-6.7.1/tests/charm++/kNeighbor/
charm-6.7.1/tests/charm++/kNeighbor/kNeighbor.ci
charm-6.7.1/tests/charm++/kNeighbor/kNeighbor.C
charm-6.7.1/tests/charm++/kNeighbor/Makefile
charm-6.7.1/tests/charm++/kNeighbor/README
charm-6.7.1/tests/charm++/migrate/
charm-6.7.1/tests/charm++/migrate/README
charm-6.7.1/tests/charm++/migrate/Makefile
charm-6.7.1/tests/charm++/migrate/migrateHello.C
charm-6.7.1/tests/charm++/migrate/migrateHello.ci
charm-6.7.1/tests/charm++/pingpong/
charm-6.7.1/tests/charm++/pingpong/pingpong.ci
charm-6.7.1/tests/charm++/pingpong/Makefile
charm-6.7.1/tests/charm++/pingpong/pingpong.C
charm-6.7.1/tests/charm++/jacobi3d/
charm-6.7.1/tests/charm++/jacobi3d/kill_03.txt
charm-6.7.1/tests/charm++/jacobi3d/kill_04.txt
charm-6.7.1/tests/charm++/jacobi3d/kill_05.txt
charm-6.7.1/tests/charm++/jacobi3d/kill_02.txt
charm-6.7.1/tests/charm++/jacobi3d/jacobi3d.C
charm-6.7.1/tests/charm++/jacobi3d/kill_01.txt
charm-6.7.1/tests/charm++/jacobi3d/kill_06.txt
charm-6.7.1/tests/charm++/jacobi3d/Makefile
charm-6.7.1/tests/charm++/jacobi3d/jacobi3d.ci
charm-6.7.1/tests/charm++/sdag/
charm-6.7.1/tests/charm++/sdag/case/
charm-6.7.1/tests/charm++/sdag/case/caseTest.ci
charm-6.7.1/tests/charm++/sdag/case/caseTest.C
charm-6.7.1/tests/charm++/sdag/case/Makefile
charm-6.7.1/tests/charm++/sdag/anytimeMigration/
charm-6.7.1/tests/charm++/sdag/anytimeMigration/migration.ci
charm-6.7.1/tests/charm++/sdag/anytimeMigration/Makefile
charm-6.7.1/tests/charm++/sdag/anytimeMigration/migration.C
charm-6.7.1/tests/charm++/sdag/template/
charm-6.7.1/tests/charm++/sdag/template/Makefile
charm-6.7.1/tests/charm++/sdag/template/pgm.C
charm-6.7.1/tests/charm++/sdag/template/pgm.ci
charm-6.7.1/tests/charm++/sdag/migration/
charm-6.7.1/tests/charm++/sdag/migration/test1.ci
charm-6.7.1/tests/charm++/sdag/migration/Makefile
charm-6.7.1/tests/charm++/sdag/migration/test1.C
charm-6.7.1/tests/charm++/sdag/randomMsgCase/
charm-6.7.1/tests/charm++/sdag/randomMsgCase/Makefile
charm-6.7.1/tests/charm++/sdag/randomMsgCase/sdagCase.ci
charm-6.7.1/tests/charm++/sdag/randomMsgCase/sdagCase.C
charm-6.7.1/tests/charm++/sdag/forallStateVar/
charm-6.7.1/tests/charm++/sdag/forallStateVar/forallStateVar.ci
charm-6.7.1/tests/charm++/sdag/forallStateVar/Makefile
charm-6.7.1/tests/charm++/sdag/forallStateVar/forallStateVar.C
charm-6.7.1/tests/charm++/sdag/Makefile
charm-6.7.1/tests/charm++/xcastredn/
charm-6.7.1/tests/charm++/xcastredn/README
charm-6.7.1/tests/charm++/xcastredn/convMsgHandlers.C
charm-6.7.1/tests/charm++/xcastredn/testController.h
charm-6.7.1/tests/charm++/xcastredn/myChareArray.h
charm-6.7.1/tests/charm++/xcastredn/Makefile
charm-6.7.1/tests/charm++/xcastredn/reductionBenchmark.ci
charm-6.7.1/tests/charm++/xcastredn/convMsgHandlers.h
charm-6.7.1/tests/charm++/xcastredn/testController.C
charm-6.7.1/tests/charm++/xcastredn/reductionBenchmark.h
charm-6.7.1/tests/charm++/xcastredn/myChareArray.C
charm-6.7.1/tests/charm++/xcastredn/.gitignore
charm-6.7.1/tests/charm++/io/
charm-6.7.1/tests/charm++/io/iotest.ci
charm-6.7.1/tests/charm++/io/iotest.C
charm-6.7.1/tests/charm++/io/Makefile
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/defines.h
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/Makefile
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/main.C
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/jacobi3d.C
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/main.ci
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/jacobi3d.cc
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/jacobi3d.ci
charm-6.7.1/tests/charm++/jacobi3d-gausssiedel/jacobi3d.h
charm-6.7.1/tests/charm++/streamingAllToAll/
charm-6.7.1/tests/charm++/streamingAllToAll/ataTest.ci
charm-6.7.1/tests/charm++/streamingAllToAll/ataDatatype.h
charm-6.7.1/tests/charm++/streamingAllToAll/ataTest.C
charm-6.7.1/tests/charm++/streamingAllToAll/README
charm-6.7.1/tests/charm++/streamingAllToAll/Makefile
charm-6.7.1/tests/charm++/taskSpawn/
charm-6.7.1/tests/charm++/taskSpawn/Makefile
charm-6.7.1/tests/charm++/taskSpawn/taskSpawn.ci
charm-6.7.1/tests/charm++/taskSpawn/taskSpawn.C
charm-6.7.1/tests/charm++/reductionTesting/
charm-6.7.1/tests/charm++/reductionTesting/Makefile
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/sectionReduction.ci
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/sectionReduction.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/Main.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/sectionReduction.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/Main.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/main.ci
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/Makefile
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting1D/readme.txt
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/Makefile
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/Main.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/main.ci
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/readme.txt
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/Main.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/sectionReduction.ci
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/sectionReduction.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting3D/sectionReduction.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/Main.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/sectionReduction.C
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/Makefile
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/Main.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/sectionReduction.h
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/readme.txt
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/main.ci
charm-6.7.1/tests/charm++/reductionTesting/reductionTesting2D/sectionReduction.ci
charm-6.7.1/tests/charm++/megatest/
charm-6.7.1/tests/charm++/megatest/multisectiontest.C
charm-6.7.1/tests/charm++/megatest/synctest.h
charm-6.7.1/tests/charm++/megatest/groupmulti.ci
charm-6.7.1/tests/charm++/megatest/groupsectiontest.ci
charm-6.7.1/tests/charm++/megatest/nodecast.C
charm-6.7.1/tests/charm++/megatest/megatest.h
charm-6.7.1/tests/charm++/megatest/completion_test.ci
charm-6.7.1/tests/charm++/megatest/priomsg.ci
charm-6.7.1/tests/charm++/megatest/nodering.C
charm-6.7.1/tests/charm++/megatest/bitvector.h
charm-6.7.1/tests/charm++/megatest/migration.ci
charm-6.7.1/tests/charm++/megatest/packtest.C
charm-6.7.1/tests/charm++/megatest/immediatering.C
charm-6.7.1/tests/charm++/megatest/callback.h
charm-6.7.1/tests/charm++/megatest/varsizetest.h
charm-6.7.1/tests/charm++/megatest/groupcast.ci
charm-6.7.1/tests/charm++/megatest/varsizetest.ci
charm-6.7.1/tests/charm++/megatest/marshall.h
charm-6.7.1/tests/charm++/megatest/fib.C
charm-6.7.1/tests/charm++/megatest/queens.h
charm-6.7.1/tests/charm++/megatest/multisectiontest.h
charm-6.7.1/tests/charm++/megatest/varsizetest2.ci
charm-6.7.1/tests/charm++/megatest/nodecast.h
charm-6.7.1/tests/charm++/megatest/megatest.C
charm-6.7.1/tests/charm++/megatest/synctest.C
charm-6.7.1/tests/charm++/megatest/completion_test.C
charm-6.7.1/tests/charm++/megatest/Makefile
charm-6.7.1/tests/charm++/megatest/reduction.ci
charm-6.7.1/tests/charm++/megatest/packtest.h
charm-6.7.1/tests/charm++/megatest/varsizetest.C
charm-6.7.1/tests/charm++/megatest/callback.C
charm-6.7.1/tests/charm++/megatest/immediatering.h
charm-6.7.1/tests/charm++/megatest/nodecast.ci
charm-6.7.1/tests/charm++/megatest/bitvector.C
charm-6.7.1/tests/charm++/megatest/callback.ci
charm-6.7.1/tests/charm++/megatest/nodering.h
charm-6.7.1/tests/charm++/megatest/megatest.ci
charm-6.7.1/tests/charm++/megatest/synctest.ci
charm-6.7.1/tests/charm++/megatest/queens.C
charm-6.7.1/tests/charm++/megatest/fib.h
charm-6.7.1/tests/charm++/megatest/marshall.C
charm-6.7.1/tests/charm++/megatest/varraystest.ci
charm-6.7.1/tests/charm++/megatest/inherit.h
charm-6.7.1/tests/charm++/megatest/groupring.ci
charm-6.7.1/tests/charm++/megatest/arrayring.h
charm-6.7.1/tests/charm++/megatest/varsizetest2.C
charm-6.7.1/tests/charm++/megatest/priolongtest.ci
charm-6.7.1/tests/charm++/megatest/reduction.h
charm-6.7.1/tests/charm++/megatest/marshall.ci
charm-6.7.1/tests/charm++/megatest/rotest.C
charm-6.7.1/tests/charm++/megatest/groupring.h
charm-6.7.1/tests/charm++/megatest/varraystest.C
charm-6.7.1/tests/charm++/megatest/migration.C
charm-6.7.1/tests/charm++/megatest/priolongtest.C
charm-6.7.1/tests/charm++/megatest/priomsg.h
charm-6.7.1/tests/charm++/megatest/templates.ci
charm-6.7.1/tests/charm++/megatest/groupcast.h
charm-6.7.1/tests/charm++/megatest/inlineem.ci
charm-6.7.1/tests/charm++/megatest/groupsectiontest.C
charm-6.7.1/tests/charm++/megatest/multisectiontest.ci
charm-6.7.1/tests/charm++/megatest/tempotest.C
charm-6.7.1/tests/charm++/megatest/priotest.C
charm-6.7.1/tests/charm++/megatest/templates.C
charm-6.7.1/tests/charm++/megatest/statistics.C
charm-6.7.1/tests/charm++/megatest/groupmulti.h
charm-6.7.1/tests/charm++/megatest/varsizetest2.h
charm-6.7.1/tests/charm++/megatest/arrayring.C
charm-6.7.1/tests/charm++/megatest/immediatering.ci
charm-6.7.1/tests/charm++/megatest/inherit.C
charm-6.7.1/tests/charm++/megatest/priotest.ci
charm-6.7.1/tests/charm++/megatest/varraystest.h
charm-6.7.1/tests/charm++/megatest/fib.ci
charm-6.7.1/tests/charm++/megatest/priolongtest.h
charm-6.7.1/tests/charm++/megatest/migration.h
charm-6.7.1/tests/charm++/megatest/nodering.ci
charm-6.7.1/tests/charm++/megatest/reduction.C
charm-6.7.1/tests/charm++/megatest/groupring.C
charm-6.7.1/tests/charm++/megatest/rotest.h
charm-6.7.1/tests/charm++/megatest/priomsg.C
charm-6.7.1/tests/charm++/megatest/groupcast.C
charm-6.7.1/tests/charm++/megatest/bitvector.ci
charm-6.7.1/tests/charm++/megatest/arrayring.ci
charm-6.7.1/tests/charm++/megatest/Make.depends
charm-6.7.1/tests/charm++/megatest/packtest.ci
charm-6.7.1/tests/charm++/megatest/queens.ci
charm-6.7.1/tests/charm++/megatest/templates.h
charm-6.7.1/tests/charm++/megatest/priotest.h
charm-6.7.1/tests/charm++/megatest/statistics.h
charm-6.7.1/tests/charm++/megatest/groupmulti.C
charm-6.7.1/tests/charm++/megatest/tempotest.ci
charm-6.7.1/tests/charm++/megatest/Makefile.win32
charm-6.7.1/tests/charm++/megatest/groupsectiontest.h
charm-6.7.1/tests/charm++/megatest/rotest.ci
charm-6.7.1/tests/charm++/megatest/inlineem.C
charm-6.7.1/tests/charm++/megatest/tempotest.h
charm-6.7.1/tests/charm++/megatest/inherit.ci
charm-6.7.1/tests/charm++/demand_creation/
charm-6.7.1/tests/charm++/demand_creation/hello.ci
charm-6.7.1/tests/charm++/demand_creation/hello.C
charm-6.7.1/tests/charm++/demand_creation/Makefile
charm-6.7.1/tests/charm++/pmetest/
charm-6.7.1/tests/charm++/pmetest/Makefile
charm-6.7.1/tests/charm++/queue/
charm-6.7.1/tests/charm++/queue/msgqtest.C
charm-6.7.1/tests/charm++/queue/Makefile
charm-6.7.1/tests/charm++/queue/pgm.C
charm-6.7.1/tests/charm++/queue/test.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/
charm-6.7.1/tests/charm++/charmxi_error_messages/entry_paramlist_manypointers.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_eattrib.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/deprecated_initcall_1.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/member_missing_semicolon.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/python_entry_nonpython_chare.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/unknown_sdag_construct.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/braces_in_comments.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/stacksize_nothreaded.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_construct.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/deprecated_initcall_2.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/braces_in_strings_escaped.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/readonly_message_array.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/caselist_nonwhenconstruct.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/local_in_chare_nodegroup.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/semi_colon_in_strings.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/typename.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/exclusive_constructor.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/const_test.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/braces_in_comments_multiline.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_eattribs.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/error_recovery.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/disappearing_comment_test_1.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/serial_error_with_linenumber.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_return_type.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_sync_return_type.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/disappearing_comment_test_3.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/disappearing_comment_test_2.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/python_invalid_args.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/invalid_sdag_member.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/ckargmsg_nonconstructor.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/braces_in_strings.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/missing_arg_types.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/missing_return_type_template.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/braces_in_concatenated_strings.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/comma_in_strings.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/immediate_in_non_nodegroup.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/missing_return_type.ci
charm-6.7.1/tests/charm++/charmxi_error_messages/sync_constructor.ci
charm-6.7.1/tests/charm++/startupTest/
charm-6.7.1/tests/charm++/startupTest/Makefile
charm-6.7.1/tests/charm++/startupTest/README
charm-6.7.1/tests/charm++/startupTest/startupTest.ci
charm-6.7.1/tests/charm++/startupTest/startupTest.h
charm-6.7.1/tests/charm++/startupTest/startupTest.C
charm-6.7.1/tests/charm++/python/
charm-6.7.1/tests/charm++/python/Makefile
charm-6.7.1/tests/charm++/python/server.ci
charm-6.7.1/tests/charm++/python/client.C
charm-6.7.1/tests/charm++/python/python.code
charm-6.7.1/tests/charm++/python/server.h
charm-6.7.1/tests/charm++/python/python_group.code
charm-6.7.1/tests/charm++/python/server.C
charm-6.7.1/tests/charm++/jacobi3d-sdag/
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_02.txt
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_05.txt
charm-6.7.1/tests/charm++/jacobi3d-sdag/jacobi3d.C
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_04.txt
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_03.txt
charm-6.7.1/tests/charm++/jacobi3d-sdag/jacobi3d.ci
charm-6.7.1/tests/charm++/jacobi3d-sdag/Makefile
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_06.txt
charm-6.7.1/tests/charm++/jacobi3d-sdag/kill_01.txt
charm-6.7.1/tests/charm++/method_templates/
charm-6.7.1/tests/charm++/method_templates/utils.h
charm-6.7.1/tests/charm++/method_templates/pgm.ci
charm-6.7.1/tests/charm++/method_templates/mylib.C
charm-6.7.1/tests/charm++/method_templates/Makefile
charm-6.7.1/tests/charm++/method_templates/mylib.h
charm-6.7.1/tests/charm++/method_templates/mylib.ci
charm-6.7.1/tests/charm++/method_templates/pgm.C
charm-6.7.1/tests/charm++/sparse/
charm-6.7.1/tests/charm++/sparse/Makefile
charm-6.7.1/tests/charm++/sparse/sparse.ci
charm-6.7.1/tests/charm++/sparse/sparse.h
charm-6.7.1/tests/charm++/sparse/sparse.C
charm-6.7.1/tests/charm++/alignment/
charm-6.7.1/tests/charm++/alignment/Makefile
charm-6.7.1/tests/charm++/alignment/alignmentCheck.C
charm-6.7.1/tests/charm++/alignment/alignmentCheck.ci
charm-6.7.1/tests/charm++/topology/
charm-6.7.1/tests/charm++/topology/Makefile
charm-6.7.1/tests/charm++/topology/rtc.C
charm-6.7.1/tests/charm++/topology/topo.ci
charm-6.7.1/tests/charm++/simplearrayhello/
charm-6.7.1/tests/charm++/simplearrayhello/Makefile
charm-6.7.1/tests/charm++/simplearrayhello/hello.C
charm-6.7.1/tests/charm++/simplearrayhello/msvc_6/
charm-6.7.1/tests/charm++/simplearrayhello/msvc_6/hello.dsp
charm-6.7.1/tests/charm++/simplearrayhello/msvc_6/hello.dsw
charm-6.7.1/tests/charm++/simplearrayhello/msvc_6/hello.opt
charm-6.7.1/tests/charm++/simplearrayhello/msvc_6/README.txt
charm-6.7.1/tests/charm++/simplearrayhello/hello.ci
charm-6.7.1/tests/charm++/delegation/
charm-6.7.1/tests/charm++/delegation/multicast/
charm-6.7.1/tests/charm++/delegation/multicast/hello.ci
charm-6.7.1/tests/charm++/delegation/multicast/Makefile
charm-6.7.1/tests/charm++/delegation/multicast/hello.C
charm-6.7.1/tests/charm++/delegation/1darray/
charm-6.7.1/tests/charm++/delegation/1darray/hello.ci
charm-6.7.1/tests/charm++/delegation/1darray/hello.C
charm-6.7.1/tests/charm++/delegation/1darray/Makefile
charm-6.7.1/tests/charm++/delegation/Makefile
charm-6.7.1/tests/charm++/delegation/pipelined-section-reduction/
charm-6.7.1/tests/charm++/delegation/pipelined-section-reduction/hello.ci
charm-6.7.1/tests/charm++/delegation/pipelined-section-reduction/hello.C
charm-6.7.1/tests/charm++/delegation/pipelined-section-reduction/Makefile
charm-6.7.1/tests/charm++/Makefile
charm-6.7.1/tests/charm++/taskSpawnRecursive/
charm-6.7.1/tests/charm++/taskSpawnRecursive/taskSpawn.C
charm-6.7.1/tests/charm++/taskSpawnRecursive/taskSpawn.ci
charm-6.7.1/tests/charm++/taskSpawnRecursive/Makefile
charm-6.7.1/tests/charm++/chkpt/
charm-6.7.1/tests/charm++/chkpt/README
charm-6.7.1/tests/charm++/chkpt/Makefile
charm-6.7.1/tests/charm++/chkpt/hello.ci
charm-6.7.1/tests/charm++/chkpt/hello.C
charm-6.7.1/tests/charm++/load_balancing/
charm-6.7.1/tests/charm++/load_balancing/Makefile
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/hello.ci
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/README
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/userdata_struct.h
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/hello.C
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/TestUserDataLB.h
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/TestUserDataLB.C
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/Makefile
charm-6.7.1/tests/charm++/load_balancing/lb_userdata_test/TestUserDataLB.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/
charm-6.7.1/tests/charm++/load_balancing/lb_test/Topo.C
charm-6.7.1/tests/charm++/load_balancing/lb_test/Topo.h
charm-6.7.1/tests/charm++/load_balancing/lb_test/README
charm-6.7.1/tests/charm++/load_balancing/lb_test/Makefile
charm-6.7.1/tests/charm++/load_balancing/lb_test/lb_test.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/lb_test.C
charm-6.7.1/tests/charm++/load_balancing/lb_test/Topo.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/predictor/
charm-6.7.1/tests/charm++/load_balancing/lb_test/predictor/test.h
charm-6.7.1/tests/charm++/load_balancing/lb_test/predictor/test.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/predictor/Makefile
charm-6.7.1/tests/charm++/load_balancing/lb_test/predictor/test.C
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/Topo.h
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/Topo.C
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/Makefile
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/Topo.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/sim.ci
charm-6.7.1/tests/charm++/load_balancing/lb_test/sim/sim.C
charm-6.7.1/tests/Makefile
charm-6.7.1/tests/perftest/
charm-6.7.1/tests/perftest/Makefile
charm-6.7.1/README.bigsim
charm-6.7.1/.gitreview
charm-6.7.1/build
charm-6.7.1/.cproject
charm-6.7.1/contrib/
charm-6.7.1/contrib/ci.snippets
charm-6.7.1/contrib/ci.vim
charm-6.7.1/.gitignore
charm-6.7.1/.project
charm-6.7.1/NAMD_DIFFS
charm-6.7.1/smart-build.pl
charm-6.7.1/LICENSE
charm-6.7.1/README.ampi
charm-6.7.1/.settings/
charm-6.7.1/.settings/org.eclipse.ltk.core.refactoring.prefs
Currently Loaded Modulefiles:
  1) modules/3.2.10.4
  2) eswrap/1.3.3-1.020200.1280.0
  3) gcc/4.9.3
  4) craype-network-gemini
  5) craype-interlagos
  6) craype/2.5.8
  7) cray-mpich/7.5.0
  8) torque/6.0.4
  9) moab/9.0.2.TAS7-1490665589_71674cf-sles11
 10) java/jdk1.8.0_51
 11) globus/5.2.5
 12) gsissh/6.2p2
 13) xalt/0.7.6.local
 14) scripts
 15) OpenSSL/1.0.2m
 16) cURL/7.56.1
 17) git/2.15.0
 18) wget/1.19.2
 19) user-paths
 20) gnuplot/5.0.5
 21) darshan/3.1.3
 22) cray-libsci/16.11.1
 23) udreg/2.3.2-1.0502.10518.2.17.gem
 24) ugni/6.0-1.0502.10863.8.28.gem
 25) pmi/5.0.10-1.0000.11050.179.3.gem
 26) dmapp/7.0.1-1.0502.11080.8.74.gem
 27) gni-headers/4.0-1.0502.10859.7.8.gem
 28) xpmem/0.1-2.0502.64982.5.3.gem
 29) dvs/2.5_0.9.0-1.0502.2188.1.113.gem
 30) alps/5.2.4-2.0502.9774.31.12.gem
 31) rca/1.0.0-2.0502.60530.1.63.gem
 32) atp/2.0.4
 33) PrgEnv-gnu/5.2.82
 34) fftw/3.3.4.10
 35) craype-hugepages8M
Selected Compiler: 
Selected Options:  smp
Creating dir: gni-crayxe-smp
Creating dir: gni-crayxe-smp/tmp
Copying src/scripts/Makefile to gni-crayxe-smp/tmp
Soft-linking over bin
Soft-linking over lib
Soft-linking over lib_so
Soft-linking over include
Soft-linking over tmp
Generating gni-crayxe-smp/tmp/conv-mach-pre.sh
Generating gni-crayxe-smp/tmp/conv-mach-opt.h, conv-mach-opt.sh
Performing '/usr/bin/gmake -j 8 basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in gni-crayxe-smp/tmp
pwd
/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp
find . -type l -exec rm {} \;
rm -rf QuickThreads
rm -rf libs
rm -rf ../bin ; mkdir ../bin
if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \
		cp -f ../../src/arch/`cat .vdir | awk -F- '{print $2}'`/unix2nt* ../bin; \
		cp -f ../../src/arch/win32/createlink.exe ../bin; \
	fi
rm -rf ../lib ; mkdir ../lib
rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso
rm -rf ../examples
rm -rf ../tests
rm -rf ../doc ; ln -s ../doc ../doc
../../src/scripts/gatherflat ../../src/scripts .
./gatherflat ../../src/conv-core        .
./gatherflat ../../src/conv-ldb         .
./gatherflat ../../src/conv-ccs         .
./gatherflat ../../src/conv-perf	.
./gatherflat ../../src/ck-core          .
./gatherflat ../../src/ck-perf          .
./gatherflat ../../src/ck-tune          .
./gatherflat ../../src/ck-ldb           .
./gatherflat ../../src/ck-cp            .
./gatherflat ../../src/langs/simplemsg  .
./gatherflat ../../src/langs/pvmc       .
./gatherflat ../../src/langs/bluegene   .
./gatherflat ../../src/langs/f90charm   .
./gatherflat ../../src/xlatcpm          .
./gathertree ../../src/QuickThreads     QuickThreads
./gathertree ../../src/libs             libs
./gathertree ../../src/arch/util        .
./gathertree ../../src/util             .
./gathertree ../../src/langs            langs
./gathertree ../../src/langs/jade       langs/jade
./gathertree ../../src/arch/common      .
./gathertree ../../src/arch/`cat .gdir` .
test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new`      . || true
./gatherflat ../../src/arch/`cat .vdir` .
./gathertree ../../src/../examples             ../examples
./gathertree ../../src/../tests                ../tests
rm -f ../bin/dep.pl ; cp dep.pl ../bin/
chmod +x charmc
./system_ln  ../tmp/charmc ../bin/
./system_ln  ../../src/scripts/testrun ../bin/
rm -rf ../include ; mkdir ../include
./system_ln  ../tmp/conv-*.*h ../include
./system_ln  ../tmp/cc-*.*h ../include
./system_ln  ../tmp/conv-mach-opt.sh ../include
if [ -x ./special.sh ] ; then SRCBASE=../../src ./special.sh ; fi
if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi
touch dirs+sources
/usr/bin/gmake charmxi
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp'
./configure --disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats
Error checking is disabled
Statistics collection is disabled
Charm tracing is disabled
Charm tracing communication thread is disabled
CharmDebug is disabled
Charm record/replay is disabled
CCS is enabled
Charm control point is disabled
Charm LB user data is disabled
Setting load balancing timer type as 'double'
checking machine name... gni-crayxe-smp
checking "cp command as"... cp -p
checking "C++ compiler as"... "CC  -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include    -D_REENTRANT      "
checking "whether C++ compiler works"... "ok"
checking "C++ linker as"... "CC  -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include   -D_REENTRANT      "
checking "whether linker works"... "ok"
checking "Native C++ compiler as"... "g++ "
checking "Sequential C++ compiler as"... "g++ "
checking "whether C++ compiler supports variadic templates without flags"... "yes"
checking "whether C++ compiler supports variadic templates with '-std=c++0x'"... "yes"
Setting charm++ envelope refnum field to unsigned short
Configuring support for message priorities of arbitrary size (bitvectors)
checking "whether compiler generates code for 64-bit"... "yes"
checking "whether compiler supports std::alignment_of"... "yes"
checking "whether has values.h "... "yes"
checking "whether has stdint.h "... "yes"
checking "whether has malloc.h "... "yes"
checking "whether has alloca.h "... "yes"
checking "whether has regex.h "... "yes"
checking "whether long long works"... "yes"
checking "whether __int64 works"... "no"
checking "whether __int128 (128-bit integer) works"... "yes"
checking "whether __int128_t (128-bit integer) works"... "yes"
checking "whether long double works"... "yes"
checking "whether ucontext has FPU pointer"... "yes"
checking "whether ucontext uses uc_regs"... "no"
checking "whether ucontext has pointer (v_regs) of vector type"... "no"
checking "whether ibverbs ibv_port_attr has link_layer field"... "yes"
checking "whether inline works in C"... "yes"
checking "whether C++ signed char and char differ"... "yes"
checking "whether C++ allows declaration of varsize array"... "yes"
checking "whether typeinfo/typeid works"... "ok"
checking "whether std::iterator_traits is defined"... "ok"
checking "whether std::distance is defined"... "ok"
checking "whether std::inserter is defined"... "ok"
checking "whether std::unordered_map is defined"... "ok"
checking "whether anon structs are permitted"... "yes"
checking "whether operator delete can be overloaded in same class"... "ok"
checking "whether offsetof is defined"... "yes"
checking "whether GCC x86 assembly works"... "yes"
checking "whether GCC x86 assembly for atomic increment works"... "yes"
checking "whether GCC IA64 assembly works"... "no"
checking "whether asm eieio assembly works"... "no"
checking "whether __thread (Thread Local Storage) is supported"... "yes"
checking "whether synchronization primitives (__sync_add_and_fetch) works in C"... "yes"
checking "whether synchronization primitives (__sync_synchronize) works in C"... "yes"
checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works in C"... "no"
checking "whether switching TLS register (64-bit) is supported"... "yes"
checking "whether getrusage accepts RUSAGE_THREAD"... "yes"
checking "whether has asctime"... "yes"
checking "whether has log2"... "yes"
checking "whether has sqrtf"... "yes"
checking "whether has fabsf"... "yes"
checking "whether has mkstemp"... "yes"
checking "whether has system"... "yes"
checking "whether has sync()"... "yes"
checking "whether has fsync()"... "yes"
checking "whether has fdatasync()"... "yes"
checking "whether has sbrk"... "yes"
checking "whether has _setjmp/_longjmp"... "yes"
checking "whether has mstats"... "no"
checking "whether has mallinfo"... "yes"
checking "whether has popen"... "yes"
checking "whether has poll"... "yes"
checking "whether has getpagesize"... "yes"
checking "whether has getpid"... "yes"
checking "whether has kill"... "yes"
checking "whether has setpriority"... "yes"
checking "whether to use signal-safe system() "... "no"
checking "whether sched_setaffinity call exists"... "yes"
checking "whether pthread_setaffinity_np call exists"... "yes"
checking "whether pthread_spin_lock exists"... "yes"
checking "whether bindprocessor call exists"... "no"
checking "whether dlopen links without -ldl"... "no"
checking "whether dlopen links with -ldl"... "yes"
checking "whether gethostname call exists"... "yes"
checking "whether getProcAddress works"... "no"
checking "whether has socklen_t"... "yes"
checking "whether getifaddrs call exists"... "yes"
checking "whether the mmap() syscall exists"... "yes"
checking "whether mmap() accepts MAP_ANON"... "yes"
checking "whether mmap() accepts MAP_NORESERVE"... "yes"
checking "whether has get_myaddress"... "yes"
checking "whether has mprotect"... "yes"
checking "whether glibc backtrace works"... "yes"
checking "whether has sleep "... "yes"
checking "whether has usleep "... "yes"
checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "yes"
checking "whether has zlib"... "yes"
checking "whether has elf.h "... "yes"
checking "whether has Multiprocessing.h for Apple "... "no"
checking "whether ntohl is available"... "yes"
checking "whether has libjpeg"... "yes"
checking "whether Python is installed"... "no"
checking "whether PMI_Get_nid exists"... "yes"
checking "whether Cray rca library is available"... "yes"
checking "whether Cray rca_has get_max_dimension"... "yes"
checking "whether GNI_GetBIConfig exists"... "yes"
checking "whether can build shared library"... "yes"
checking for sync... sync 
checking "F77 compiler as"... "ftn "
checking "whether Fortran 77 compiler works"... "yes"
checking "F90 compiler as"... "ftn "
checking "whether Fortran 90 compiler works"... "yes"
checking subroutine name used by Fortran 90 compiler... ONESCORE
checking Fortran 90 mod name is capital... "no"
checking Fortran 90 mod name extension... "mod"
configure: creating ./config.status
config.status: creating libs/ck-libs/ampi/ampiCC
config.status: creating libs/ck-libs/ampi/ampirun
config.status: creating conv-autoconfig.h
config.status: executing config-cleanup commands
config.status: executing default commands
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-main.o ../../src/xlat-i/xi-main.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-grammar.tab.o ../../src/xlat-i/xi-grammar.tab.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -DYY_NEVER_INTERACTIVE   -c -o xi-scan.o ../../src/xlat-i/xi-scan.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Template.o ../../src/xlat-i/xi-Template.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-AstNode.o ../../src/xlat-i/xi-AstNode.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Entry.o ../../src/xlat-i/xi-Entry.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Member.o ../../src/xlat-i/xi-Member.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Parameter.o ../../src/xlat-i/xi-Parameter.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-SdagConstruct.o ../../src/xlat-i/xi-SdagConstruct.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-BlockConstruct.o ../../src/xlat-i/xi-BlockConstruct.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Type.o ../../src/xlat-i/xi-Type.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Chare.o ../../src/xlat-i/xi-Chare.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Message.o ../../src/xlat-i/xi-Message.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Construct.o ../../src/xlat-i/xi-Construct.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Module.o ../../src/xlat-i/xi-Module.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-SdagCollection.o ../../src/xlat-i/xi-SdagCollection.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-Value.o ../../src/xlat-i/xi-Value.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o xi-util.o ../../src/xlat-i/xi-util.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o sdag-globals.o ../../src/xlat-i/sdag/sdag-globals.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o CSdagConstruct.o ../../src/xlat-i/sdag/CSdagConstruct.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o CStateVar.o ../../src/xlat-i/sdag/CStateVar.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Atomic.o ../../src/xlat-i/sdag/constructs/Atomic.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Case.o ../../src/xlat-i/sdag/constructs/Case.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o CaseList.o ../../src/xlat-i/sdag/constructs/CaseList.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Else.o ../../src/xlat-i/sdag/constructs/Else.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Forall.o ../../src/xlat-i/sdag/constructs/Forall.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o For.o ../../src/xlat-i/sdag/constructs/For.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o If.o ../../src/xlat-i/sdag/constructs/If.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o IntExpr.o ../../src/xlat-i/sdag/constructs/IntExpr.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o OList.o ../../src/xlat-i/sdag/constructs/OList.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Overlap.o ../../src/xlat-i/sdag/constructs/Overlap.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o SdagEntry.o ../../src/xlat-i/sdag/constructs/SdagEntry.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o SList.o ../../src/xlat-i/sdag/constructs/SList.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o Template.o ../../src/xlat-i/sdag/constructs/Template.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o When.o ../../src/xlat-i/sdag/constructs/When.C
../bin/charmc -host  -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I.   -c -o While.o ../../src/xlat-i/sdag/constructs/While.C
../bin/charmc -host  -language c++ -cp ../bin/ -o charmxi xi-main.o xi-grammar.tab.o xi-scan.o xi-Template.o xi-AstNode.o xi-Entry.o xi-Member.o xi-Parameter.o xi-SdagConstruct.o xi-BlockConstruct.o xi-Type.o xi-Chare.o xi-Message.o xi-Construct.o xi-Module.o xi-SdagCollection.o xi-Value.o xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o CParsedFile.o CStateVar.o Atomic.o Case.o CaseList.o Else.o Forall.o For.o If.o IntExpr.o OList.o Overlap.o SdagEntry.o SList.o Template.o When.o While.o
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp'
/usr/bin/gmake headerlinks
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp'
../bin/charmc -intrinsic -optimize -production   ckcallback.ci && touch ckcallback.ci.stamp
../bin/charmc -intrinsic -optimize -production   DummyLB.ci && touch DummyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GreedyLB.ci && touch GreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   CommLB.ci && touch CommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RandCentLB.ci && touch RandCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RefineLB.ci && touch RefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RefineCommLB.ci && touch RefineCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RotateLB.ci && touch RotateLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   DistributedLB.ci && touch DistributedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   HybridLB.ci && touch HybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   ComboCentLB.ci && touch ComboCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RefineSwapLB.ci && touch RefineSwapLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   NeighborLB.ci && touch NeighborLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   OrbLB.ci && touch OrbLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   BlockLB.ci && touch BlockLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GreedyCommLB.ci && touch GreedyCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   NodeLevelLB.ci && touch NodeLevelLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GraphPartLB.ci && touch GraphPartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GraphBFTLB.ci && touch GraphBFTLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GridCommLB.ci && touch GridCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GridCommRefineLB.ci && touch GridCommRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   HbmLB.ci && touch HbmLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RefineKLB.ci && touch RefineKLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TempAwareCommLB.ci && touch TempAwareCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TreeMatchLB.ci && touch TreeMatchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GreedyAgentLB.ci && touch GreedyAgentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   NeighborCommLB.ci && touch NeighborCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   PhasebyArrayLB.ci && touch PhasebyArrayLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RecBipartLB.ci && touch RecBipartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   CommAwareRefineLB.ci && touch CommAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   AdaptiveLB.ci && touch AdaptiveLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   MetisLB.ci && touch MetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   ScotchLB.ci && touch ScotchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TeamLB.ci && touch TeamLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   WSLB.ci && touch WSLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GridMetisLB.ci && touch GridMetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TempAwareGreedyLB.ci && touch TempAwareGreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GridHybridSeedLB.ci && touch GridHybridSeedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TopoCentLB.ci && touch TopoCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   GridHybridLB.ci && touch GridHybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TopoLB.ci && touch TopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   RefineTopoLB.ci && touch RefineTopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   TempAwareRefineLB.ci && touch TempAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckmarshall.ci && touch ckmarshall.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckarray.ci && touch ckarray.ci.stamp
../bin/charmc -intrinsic -optimize -production   cklocation.ci && touch cklocation.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckreduction.ci && touch ckreduction.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckarrayreductionmgr.ci && touch ckarrayreductionmgr.ci.stamp
../bin/charmc -intrinsic -optimize -production   tempo.ci && touch tempo.ci.stamp
../bin/charmc -intrinsic -optimize -production   waitqd.ci && touch waitqd.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckfutures.ci && touch ckfutures.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckcheckpoint.ci && touch ckcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckcheckpointstatus.ci && touch ckcheckpointstatus.ci.stamp
../bin/charmc -intrinsic -optimize -production   ckmemcheckpoint.ci && touch ckmemcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production   LBDatabase.ci && touch LBDatabase.ci.stamp
../bin/charmc -intrinsic -optimize -production   MetaBalancer.ci && touch MetaBalancer.ci.stamp
../bin/charmc -intrinsic -optimize -production   CentralLB.ci && touch CentralLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   NullLB.ci && touch NullLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   BaseLB.ci && touch BaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   NborBaseLB.ci && touch NborBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   DistBaseLB.ci && touch DistBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   HybridBaseLB.ci && touch HybridBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   EveryLB.ci && touch EveryLB.ci.stamp
../bin/charmc -intrinsic -optimize -production   CommonLBs.ci && touch CommonLBs.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-summary.ci && touch trace-summary.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-projections.ci && touch trace-projections.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-simple.ci && touch trace-simple.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-controlPoints.ci && touch trace-controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-Tau.ci && touch trace-Tau.ci.stamp
../bin/charmc -intrinsic -optimize -production   trace-utilization.ci && touch trace-utilization.ci.stamp
../bin/charmc -intrinsic -optimize -production   BlueGene.ci && touch BlueGene.ci.stamp
../bin/charmc -intrinsic -optimize -production   controlPoints.ci && touch controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production   pathHistory.ci && touch pathHistory.ci.stamp
../bin/charmc -intrinsic -optimize -production   mpi-mainmodule.ci && touch mpi-mainmodule.ci.stamp
Soft-linking headers...
for hdr in AdaptiveLB.decl.h AdaptiveLB.h BGPTorus.h BGQTorus.h BaseLB.decl.h BaseLB.h BlockLB.decl.h BlockLB.h BlueGene.decl.h BlueGene.h CentralLB.decl.h CentralLB.h CentralLBMsg.h CkArray.decl.h CkArrayReductionMgr.decl.h CkCallback.decl.h CkCheckpoint.decl.h CkCheckpointStatus.decl.h CkFutures.decl.h CkLocation.decl.h CkMarshall.decl.h CkMemCheckpoint.decl.h CkReduction.decl.h ComboCentLB.decl.h ComboCentLB.h CommAwareRefineLB.decl.h CommAwareRefineLB.h CommLB.decl.h CommLB.h CommLBHeap.h CommonLBs.decl.h ControlPoints.decl.h DistBaseLB.decl.h DistBaseLB.h DistributedLB.decl.h DistributedLB.h DummyLB.decl.h DummyLB.h EveryLB.decl.h GraphBFTLB.decl.h GraphBFTLB.h GraphPartLB.decl.h GraphPartLB.h GreedyAgentLB.decl.h GreedyAgentLB.h GreedyCommLB.decl.h GreedyCommLB.h GreedyLB.decl.h GreedyLB.h GridCommLB.decl.h GridCommLB.h GridCommRefineLB.decl.h GridCommRefineLB.h GridHybridLB.decl.h GridHybridLB.h GridHybridSeedLB.decl.h GridHybridSeedLB.h GridMetisLB.decl.h GridMetisLB.h HbmLB.decl.h HbmLB.h HybridBaseLB.decl.h HybridBaseLB.h HybridLB.decl.h HybridLB.h HybridLBMsg.h LBAgent.h LBComm.h LBDBManager.h LBDatabase.decl.h LBDatabase.h LBMachineUtil.h LBOM.h LBObj.h LBProfit.h LBSimulation.h MetaBalancer.decl.h MetaBalancer.h MetisLB.decl.h MetisLB.h NborBaseLB.decl.h NborBaseLB.h NeighborCommLB.decl.h NeighborCommLB.h NeighborLB.decl.h NeighborLB.h NeighborLBMsg.h NodeLevelLB.decl.h NodeLevelLB.h NullLB.decl.h OrbLB.decl.h OrbLB.h PathHistory.decl.h PhasebyArrayLB.decl.h PhasebyArrayLB.h RTH.h RandCentLB.decl.h RandCentLB.h RecBipartLB.decl.h RecBipartLB.h RefineCommLB.decl.h RefineCommLB.h RefineKLB.decl.h RefineKLB.h RefineLB.decl.h RefineLB.h RefineSwapLB.decl.h RefineSwapLB.h RefineTopoLB.decl.h RefineTopoLB.h Refiner.h RefinerApprox.h RefinerComm.h RefinerTemp.h RotateLB.decl.h RotateLB.h SSE-Double.h SSE-Float.h ScotchLB.decl.h ScotchLB.h TeamLB.decl.h TeamLB.h TempAwareCommLB.decl.h TempAwareCommLB.h TempAwareGreedyLB.decl.h TempAwareGreedyLB.h TempAwareRefineLB.decl.h TempAwareRefineLB.h TopoCentLB.decl.h TopoCentLB.h TopoLB.decl.h TopoLB.h TopoManager.h TraceControlPoints.decl.h TraceProjections.decl.h TraceSimple.decl.h TraceSummary.decl.h TraceTau.decl.h TraceUtilization.decl.h TreeMatchLB.decl.h TreeMatchLB.h WSLB.decl.h WSLB.h XTTorus.h arrayRedistributor.h bgconverse.h bigsim_debug.h bigsim_logs.h bigsim_network.h bigsim_ooc.h bigsim_record.h bigsim_timing.h bitvecset.h blue-conv.h blue.h blue_defs.h blue_impl.h blue_types.h ccs-auth.c ccs-auth.h ccs-client.c ccs-client.h ccs-server.h charm++.h charm-api.h charm.h ck.h ckBIconfig.h ckIgetControl.h ckarray.h ckarrayindex.h ckarrayreductionmgr.h ckbitvector.h ckcallback-ccs.h ckcallback.h ckcausalmlog.h ckcheckpoint.h ckcomplex.h ckdirect.h ckdll.h ckevacuation.h ckfutures.h ckgraph.h ckgraphTemp.h ckhashtable.h ckheap.h ckimage.h cklists.h ckliststring.h cklocation.h cklocrec.h ckmemcheckpoint.h ckmessage.h ckmessagelogging.h ckmigratable.h ckobjQ.h ckobjid.h ckreduction.h cksection.h cksequence.h cksequence_factory.h cksequence_internal.h ckset.h ckstatistics.h ckstream.h cktiming.h ckvector3d.h cmidirect.h cmidirectmanytomany.h cmimemcpy.h cmipool.h cmiqueue.h cmitls.h controlPoints.h controlPointsf.h conv-autoconfig.h conv-ccs.h conv-common.h conv-config.h conv-config.sh conv-cpath.h conv-cpm.h conv-lists.h conv-mach.h conv-mach.sh conv-qd.h conv-random.h conv-trace.h converse.h cp_effects.h cpthreads.h crc32.h debug-charm.h debug-conv++.h debug-conv.h elements.h envelope-path.h envelope.h graph.h init.h lbdb++.h lbdb.h manager.h memory-isomalloc.h mempool.h middle-blue.h middle-conv.h middle.h mpi-interoperate.h mpi_main.decl.h msgq.h objid.h pathHistory.h persistent.h pup.h pup_c.h pup_cmialloc.h pup_mpi.h pup_paged.h pup_stl.h pup_toNetwork.h pup_toNetwork4.h pupf.h pvm3.h pvmc.h qd.h queueing.h rand48_replacement.h random_sequence.h readonly.h register.h sdag.h shared-alloc.h simd.h simplemsg.h sm.h sockRoutines.c sockRoutines.h stats.h strided_sequence.h tempo.decl.h tempo.h topology.h trace-bluegene.h trace-common.h trace-controlPoints.h trace-projections.h trace-simple.h trace.h vector2d.h waitqd.decl.h waitqd.h ; do test ! -f "../include/`basename $hdr`" && ./system_ln "../tmp/$hdr" ../include ; done
touch headerlinks
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp'
touch basics
Performing '/usr/bin/gmake -j 8 charm++ OPTS=-optimize -production QUIET=' in gni-crayxe-smp/tmp
../bin/charmc  -optimize -production   -I.   -c -o DummyLB.o DummyLB.C
../bin/charmc  -optimize -production   -I.   -c -o GreedyLB.o GreedyLB.C
../bin/charmc  -optimize -production   -I.   -c -o CommLB.o CommLB.C
../bin/charmc  -optimize -production   -I.   -c -o RandCentLB.o RandCentLB.C
../bin/charmc  -optimize -production   -I.   -c -o RefineLB.o RefineLB.C
../bin/charmc  -optimize -production   -I.   -c -o RefineCommLB.o RefineCommLB.C
../bin/charmc  -optimize -production   -I.   -c -o RotateLB.o RotateLB.C
../bin/charmc  -optimize -production   -I.   -c -o DistributedLB.o DistributedLB.C
../bin/charmc  -optimize -production   -I.   -c -o HybridLB.o HybridLB.C
../bin/charmc  -optimize -production   -I.   -c -o ComboCentLB.o ComboCentLB.C
../bin/charmc  -optimize -production   -I.   -c -o RefineSwapLB.o RefineSwapLB.C
../bin/charmc  -optimize -production   -I.   -c -o NeighborLB.o NeighborLB.C
../bin/charmc  -optimize -production   -I.   -c -o OrbLB.o OrbLB.C
../bin/charmc  -optimize -production   -I.   -c -o BlockLB.o BlockLB.C
../bin/charmc  -optimize -production   -I.   -c -o GreedyCommLB.o GreedyCommLB.C
../bin/charmc  -optimize -production   -I.   -c -o manager.o manager.C
../bin/charmc  -optimize -production   -I.   -c -o NodeLevelLB.o NodeLevelLB.C
../bin/charmc  -optimize -production   -I.   -c -o CommonLBs.o CommonLBs.C
/usr/bin/gmake -C libs/ck-libs/completion
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/completion'
../../../../bin/charmc -optimize -production   -c completion.ci
/bin/cp completion.h ../../../../include
../bin/charmc -seq  -DCMK_NOT_USE_CONVERSE=1 -o sockRoutines-seq.o sockRoutines.c
../bin/charmc  -optimize -production   -I.   -c -o trace-common.o trace-common.C
../../../../bin/charmc -optimize -production   -I../../../../tmp -o completion.o completion.C
../bin/charmc  -optimize -production   -I.   -c -o tracec.o tracec.C
/bin/cp completion.decl.h ../../../../include
../bin/charmc  -optimize -production   -I.   -c -o tracef.o tracef.C
/bin/cp completion.def.h ../../../../include
../bin/charmc  -optimize -production   -I.   -c -o init.o init.C
../bin/charmc  -optimize -production   -I.   -c -o register.o register.C
../bin/charmc  -optimize -production   -I.   -c -o qd.o qd.C
../bin/charmc  -optimize -production   -I.   -c -o ck.o ck.C
../bin/charmc  -optimize -production   -I.   -c -o msgalloc.o msgalloc.C
../bin/charmc  -optimize -production   -I.   -c -o ckfutures.o ckfutures.C
../bin/charmc  -optimize -production   -I.   -c -o ckIgetControl.o ckIgetControl.C
../bin/charmc  -optimize -production   -I.   -c -o debug-message.o debug-message.C
../bin/charmc  -optimize -production   -I.   -c -o debug-charm.o debug-charm.C
../bin/charmc  -optimize -production   -I.   -c -o ckcallback.o ckcallback.C
../../../../bin/charmc -optimize -production   -o ../../../../lib/libmodulecompletion.a completion.o 
../bin/charmc  -optimize -production   -I.   -c -o cklocation.o cklocation.C
ar: creating ../../../../lib/libmodulecompletion.a
../bin/charmc  -optimize -production   -I.   -c -o ckarray.o ckarray.C
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/completion'
../bin/charmc  -optimize -production   -I.   -c -o ckreduction.o ckreduction.C
../bin/charmc  -optimize -production   -I.   -c -o ckarrayreductionmgr.o ckarrayreductionmgr.C
../bin/charmc  -optimize -production   -I.   -c -o tempo.o tempo.C
../bin/charmc  -optimize -production   -I.   -c -o waitqd.o waitqd.C
../bin/charmc  -optimize -production   -I.   -c -o LBDatabase.o LBDatabase.C
../bin/charmc  -optimize -production   -I.   -c -o MetaBalancer.o MetaBalancer.C
../bin/charmc  -optimize -production   -I.   -c -o lbdb.o lbdb.C
../bin/charmc  -optimize -production   -I.   -c -o lbdbf.o lbdbf.C
../bin/charmc  -optimize -production   -I.   -c -o ckobjQ.o ckobjQ.C
../bin/charmc  -optimize -production   -I.   -c -o LBAgent.o LBAgent.C
../bin/charmc  -optimize -production   -I.   -c -o LBProfit.o LBProfit.C
../bin/charmc  -optimize -production   -I.   -c -o ckcheckpoint.o ckcheckpoint.C
../bin/charmc  -optimize -production   -I.   -c -o ckmemcheckpoint.o ckmemcheckpoint.C
../bin/charmc  -optimize -production   -I.   -c -o ckevacuation.o ckevacuation.C
../bin/charmc  -optimize -production   -I.   -c -o ckmessagelogging.o ckmessagelogging.C
../bin/charmc  -optimize -production   -I.   -c -o ckcausalmlog.o ckcausalmlog.C
../bin/charmc  -optimize -production   -I.   -c -o ckobjid.o ckobjid.C
../bin/charmc  -optimize -production   -I.   -c -o LBDBManager.o LBDBManager.C
../bin/charmc  -optimize -production   -I.   -c -o LBComm.o LBComm.C
../bin/charmc  -optimize -production   -I.   -c -o LBObj.o LBObj.C
../bin/charmc  -optimize -production   -I.   -c -o LBMachineUtil.o LBMachineUtil.C
../bin/charmc  -optimize -production   -I.   -c -o CentralPredictor.o CentralPredictor.C
../bin/charmc  -optimize -production   -I.   -c -o BaseLB.o BaseLB.C
../bin/charmc  -optimize -production   -I.   -c -o CentralLB.o CentralLB.C
../bin/charmc  -optimize -production   -I.   -c -o HybridBaseLB.o HybridBaseLB.C
../bin/charmc  -optimize -production   -I.   -c -o NborBaseLB.o NborBaseLB.C
../bin/charmc  -optimize -production   -I.   -c -o DistBaseLB.o DistBaseLB.C
../bin/charmc  -optimize -production   -I.   -c -o ckgraphTemp.o ckgraphTemp.C
../bin/charmc  -optimize -production   -I.   -c -o ckgraph.o ckgraph.C
../bin/charmc  -optimize -production   -I.   -c -o LButil.o LButil.C
../bin/charmc  -optimize -production   -I.   -c -o RefinerTemp.o RefinerTemp.C
../bin/charmc  -optimize -production   -I.   -c -o Refiner.o Refiner.C
../bin/charmc  -optimize -production   -I.   -c -o RefinerApprox.o RefinerApprox.C
../bin/charmc  -optimize -production   -I.   -c -o RefinerComm.o RefinerComm.C
../bin/charmc  -optimize -production   -I.   -c -o bitvecset.o bitvecset.c
../bin/charmc  -optimize -production   -I.   -c -o ckset.o ckset.C
../bin/charmc  -optimize -production   -I.   -c -o ckheap.o ckheap.C
../bin/charmc  -optimize -production   -I.   -c -o CommLBHeap.o CommLBHeap.C
../bin/charmc  -optimize -production   -I.   -c -o NullLB.o NullLB.C
../bin/charmc  -optimize -production   -I.   -c -o LBSimulation.o LBSimulation.C
../bin/charmc  -optimize -production   -I.   -c -o modifyScheduler.o modifyScheduler.C
../bin/charmc  -optimize -production   -I.   -c -o charmProjections.o charmProjections.C
../bin/charmc  -optimize -production   -I.   -c -o cktiming.o cktiming.C
../bin/charmc  -optimize -production   -I.   -c -o ckbitvector.o ckbitvector.C
../bin/charmc  -optimize -production   -I.   -c -o pathHistory.o pathHistory.C
../bin/charmc  -optimize -production   -I.   -c -o controlPoints.o controlPoints.C
../bin/charmc  -optimize -production   -I.   -c -o arrayRedistributor.o arrayRedistributor.C
../bin/charmc  -optimize -production   -I.   -c -o cp_effects.o cp_effects.C
../bin/charmc  -optimize -production   -I.   -c -o trace-controlPoints.o trace-controlPoints.C
../bin/charmc  -optimize -production   -I.   -c -o mpi-interoperate.o mpi-interoperate.C
../bin/charmc  -optimize -production   -I.   -c -o convcore.o convcore.c
../bin/charmc  -optimize -production   -I.   -c -o conv-conds.o conv-conds.c
../bin/charmc  -optimize -production   -I.   -c -o queueing.o queueing.C
../bin/charmc  -optimize -production   -I.   -c -o msgmgr.o msgmgr.c
../bin/charmc  -optimize -production   -I.   -c -o cpm.o cpm.c
../bin/charmc  -optimize -production   -I.   -c -o cpthreads.o cpthreads.c
../bin/charmc  -optimize -production   -I.   -c -o futures.o futures.c
../bin/charmc  -optimize -production   -I.   -c -o cldb.o cldb.c
../bin/charmc  -optimize -production   -I.   -c -o random.o random.c
../bin/charmc  -optimize -production   -I.   -c -o debug-conv.o debug-conv.c
../bin/charmc  -optimize -production   -I.   -c -o debug-conv++.o debug-conv++.C
../bin/charmc  -optimize -production   -I.   -c -o conv-ccs.o conv-ccs.c
../bin/charmc  -optimize -production   -I.   -c -o ccs-builtins.o ccs-builtins.C
../bin/charmc  -optimize -production   -I.   -c -o middle-ccs.o middle-ccs.C
../bin/charmc  -optimize -production   -I.   -c -o traceCore.o traceCore.C
../bin/charmc  -optimize -production   -I.   -c -o traceCoreCommon.o traceCoreCommon.C
../bin/charmc  -optimize -production   -I.   -c -o converseProjections.o converseProjections.C
../bin/charmc  -optimize -production   -I.   -c -o machineProjections.o machineProjections.C
../bin/charmc  -optimize -production   -I.   -c -o quiescence.o quiescence.c
../bin/charmc  -optimize -production   -I.   -c -o isomalloc.o isomalloc.c
../bin/charmc  -optimize -production   -I.   -c -o mem-arena.o mem-arena.c
../bin/charmc  -optimize -production   -I.   -c -o conv-counter.o conv-counter.c
../bin/charmc  -optimize -production   -I.   -c -o global-nop.o global-nop.c
../bin/charmc  -optimize -production   -I.   -c -o cmipool.o cmipool.c
../bin/charmc  -optimize -production   -I.   -c -o cpuaffinity.o cpuaffinity.c
../bin/charmc  -optimize -production   -I.   -c -o cputopology.o cputopology.C
../bin/charmc  -optimize -production   -I.   -c -o cmitls.o cmitls.c
../bin/charmc  -optimize -production   -I.   -c -o memoryaffinity.o memoryaffinity.c
SRCBASE=../../src ./commitid.sh
../bin/charmc  -optimize -production   -I.   -c -o sdag.o sdag.C
Copying VERSION.new = v6.7.1-0-gbdf6a1b-namd-charm-6.7.1-build-2016-Nov-07-136676 over VERSION =
../bin/charmc  -optimize -production   -I.   -c -o conv-interoperate.o conv-interoperate.c
../bin/charmc  -optimize -production   -I. -o machine.o  -DFOR_CPLUS=1 machine.c
../bin/charmc  -optimize -production   -I.   -c -o pup_util.o pup_util.C
../bin/charmc  -optimize -production   -I.   -c -o pup_toNetwork.o pup_toNetwork.C
../bin/charmc  -optimize -production   -I.   -c -o pup_toNetwork4.o pup_toNetwork4.C
../bin/charmc  -optimize -production   -I.   -c -o pup_xlater.o pup_xlater.C
../bin/charmc  -optimize -production   -I.   -c -o pup_c.o pup_c.C
../bin/charmc  -optimize -production   -I.   -c -o pup_paged.o pup_paged.C
../bin/charmc  -optimize -production   -I.   -c -o pup_cmialloc.o pup_cmialloc.C
../bin/charmc  -optimize -production   -I.   -c -o ckimage.o ckimage.C
../bin/charmc  -optimize -production   -I.   -c -o ckdll.o ckdll.C
../bin/charmc  -optimize -production   -I.   -c -o ckhashtable.o ckhashtable.C
../bin/charmc  -optimize -production   -I.   -c -o sockRoutines.o sockRoutines.c
../bin/charmc  -optimize -production   -I.   -c -o conv-lists.o conv-lists.C
../bin/charmc  -optimize -production   -I.   -c -o RTH.o RTH.C
../bin/charmc  -optimize -production   -o ../lib/libconv-cplus-y.a machine.o
../bin/charmc  -optimize -production   -I.   -c -o persist-comm.o persist-comm.c
../bin/charmc  -optimize -production   -I.   -c -o mempool.o mempool.c
../bin/charmc  -optimize -production   -I.   -c -o graph.o graph.c
ar: creating ../lib/libconv-cplus-y.a
../bin/charmc  -optimize -production   -I. -o ../lib/libconv-cplus-n.a -DFOR_CPLUS=0 machine.c
../bin/charmc  -optimize -production   -I.   -c -o TopoManager.o TopoManager.C
../bin/charmc  -optimize -production   -I.   -c -o CrayNid.o CrayNid.c
../bin/charmc  -optimize -production   -I.   -c -o BGQTorus.o BGQTorus.C
../bin/charmc  -optimize -production   -I.   -c -o crc32.o crc32.c
../bin/charmc  -optimize -production   -I.   -c -o lz4.o lz4.c
../bin/charmc  -optimize -production   -I.   -c -o partitioning_strategies.o partitioning_strategies.C
../bin/charmc  -optimize -production   -I.   -c -o hilbert.o hilbert.C
../bin/charmc  -optimize -production   -c pup_f.f90 && ../bin/charmc  -optimize -production   -cpmod ../include pupmod.M || touch pup_f.o
../bin/charmc  -optimize -production   -o ../lib/libldb-rand.a cldb.rand.c
../bin/charmc  -optimize -production   -o ../lib/libldb-spray.a cldb.spray.c
../bin/charmc  -optimize -production   -o ../lib/libldb-workstealing.a cldb.workstealing.c
ar: creating ../lib/libconv-cplus-n.a
ar: creating ../lib/libldb-rand.a
ar: creating ../lib/libldb-spray.a
ar: creating ../lib/libldb-workstealing.a
cp: cannot stat `pupmod': No such file or directory
Fatal Error by charmc in directory /mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/namd/charm-6.7.1/gni-crayxe-smp/tmp
   Command cp -p pupmod ../include/ returned error code 1
charmc exiting...
../bin/charmc  -optimize -production   -o ../lib/libldb-neighbor.a cldb.neighbor.c
../bin/charmc  -optimize -production   -o ../lib/libldb-none.a cldb.none.c
../bin/charmc  -optimize -production   -o ../lib/libldb-test.a cldb.test.c
../bin/charmc  -optimize -production   -o ../lib/libldb-bluegene.a cldb.bluegene.c
../bin/charmc  -optimize -production   -I.   -c -o trace-converse.o trace-converse.c
../bin/charmc  -optimize -production   -o tracef_f.o -c tracef_f.f90 && ../bin/charmc  -optimize -production   -cpmod ../include tracemod.M  || touch tracef_f.o
cp memory.c libmemory-default.c
cp memory.c libmemory-os.c
cp memory.c libmemory-gnu.c
cp memory.c libmemory-verbose.c
ar: creating ../lib/libldb-none.a
ar: creating ../lib/libldb-test.a
ar: creating ../lib/libldb-bluegene.a
ar: creating ../lib/libldb-neighbor.a
cp memory.c libmemory-paranoid.c
cp memory.c libmemory-leak.c
cp memory.c libmemory-isomalloc.c
cp memory.c libmemory-os-verbose.c
cp memory.c libmemory-os-isomalloc.c
cp memory.c libmemory-os-leak.c
cp memory.c libmemory-os-paranoid.c
cp memory.c libmemory-os-lock.c
../bin/charmc  -optimize -production   -o ../lib/libmemory-os-wrapper.a memory-os-wrapper.C || touch ../lib/libmemory-os-wrapper.a
cp threads.c libthreads-default.c
( /usr/bin/gmake -C QuickThreads clean )
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/QuickThreads'
rm -f qtmd.h libqt.a libstp.a meas.o stp.o qt.o
rm -f qtmdb.s qtmds.s qtmdc.o qtmdb.o qtmds.o run
rm -f Makefile
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/QuickThreads'
( cd QuickThreads;./configure )
cp threads.c libthreads-default-tls.c
cp threads.c libthreads-qt.c
cp threads.c libthreads-qt-tls.c
cp threads.c libthreads-context.c
cp threads.c libthreads-context-tls.c
cp threads.c libthreads-uJcontext.c
cp threads.c libthreads-uJcontext-tls.c
cp threads.c libthreads-pthreads.c
cp threads.c libthreads-fibers.c
cp threads.c libthreads-stackcopy.c
cp threads.c libthreads-memoryalias.c
cp threads.c libthreads-qt-memoryalias.c
cp threads.c libthreads-context-memoryalias.c
cp threads.c libthreads-uJcontext-memoryalias.c
../bin/charmc  -optimize -production   -DCMK_NOT_USE_CONVERSE=1 ccs-client.c
../bin/charmc  -optimize -production   -I.   -c -o custom_partitioner.o custom_partitioner.C
../bin/charmc  -optimize -production   -I.   -c -o set_partition_params.o set_partition_params.c
../bin/charmc  -optimize -production   -I.   -c -o topology.o topology.C
../bin/charmc  -optimize -production   -I.   -c -o generate.o generate.c
ar: creating ../lib/libmemory-os-wrapper.a
Appending .mod to object file name
Running configure on generic64-light
( /usr/bin/gmake -C QuickThreads qt  OPTS='-optimize -production   -Wno-error' ) || ( echo "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" && false )
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/QuickThreads'
rm -f qtmd.h
../system_ln  md/setjmp_d.h qtmd.h
../../bin/charmc -seq -I. -optimize -production   -Wno-error -U_FORTIFY_SOURCE -c -o qt.o qt.c
../bin/charmc  -optimize -production   -I.   -c -o edgelist.o edgelist.c
../bin/charmc  -optimize -production   -c global-elfgot.C -o ../lib/libglobal-swap.a || touch ../lib/libglobal-swap.a
../bin/charmc  -optimize -production   -c global-elfcopy.C -o ../lib/libglobal-copy.a || touch ../lib/libglobal-copy.a
../../bin/charmc -seq -I. -optimize -production   -Wno-error -U_FORTIFY_SOURCE -c -o qtmds.o md/setjmp64_.c
../bin/charmc  -optimize -production   -c loadsym.c -o ../lib/loadsym.a || touch ../lib/loadsym.a
../bin/charmc -host  conv-cpm.c
../bin/charmc  -optimize -production   -c -I. charmf.C
md/setjmp64_.c: In function 'qt_args_1':
md/setjmp64_.c:27:33: warning: incompatible implicit declaration of built-in function 'alloca'
 #define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
                                 ^
md/setjmp64_.c:61:5: note: in expansion of macro 'SHIFTSP'
     SHIFTSP(rjb);
     ^
md/setjmp64_.c:62:14: warning: passing argument 1 of '_longjmp' from incompatible pointer type
     _longjmp((unsigned long*)rjb, push_buf((void *)jb));
              ^
In file included from md/setjmp64_.c:9:0:
/usr/include/setjmp.h:91:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
 extern void _longjmp (struct __jmp_buf_tag __env[1], int __val)
             ^
md/setjmp64_.c: In function 'qt_args':
md/setjmp64_.c:27:33: warning: incompatible implicit declaration of built-in function 'alloca'
 #define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
                                 ^
md/setjmp64_.c:79:5: note: in expansion of macro 'SHIFTSP'
     SHIFTSP(sp);
     ^
md/setjmp64_.c: In function 'qt_block':
md/setjmp64_.c:27:33: warning: incompatible implicit declaration of built-in function 'alloca'
 #define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
                                 ^
md/setjmp64_.c:98:5: note: in expansion of macro 'SHIFTSP'
     SHIFTSP(sp);
     ^
md/setjmp64_.c:99:14: warning: passing argument 1 of '_longjmp' from incompatible pointer type
     _longjmp((unsigned long*)sp, push_buf((void *)&help));
              ^
In file included from md/setjmp64_.c:9:0:
/usr/include/setjmp.h:91:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
 extern void _longjmp (struct __jmp_buf_tag __env[1], int __val)
             ^
md/setjmp64_.c: In function 'qt_abort':
md/setjmp64_.c:27:33: warning: incompatible implicit declaration of built-in function 'alloca'
 #define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
                                 ^
md/setjmp64_.c:111:3: note: in expansion of macro 'SHIFTSP'
   SHIFTSP(sp);
   ^
md/setjmp64_.c:112:12: warning: passing argument 1 of '_longjmp' from incompatible pointer type
   _longjmp((unsigned long*)sp, push_buf((void *)&help));
            ^
In file included from md/setjmp64_.c:9:0:
/usr/include/setjmp.h:91:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
 extern void _longjmp (struct __jmp_buf_tag __env[1], int __val)
             ^
global-elfgot.C:78:4: error: #error "Global-elfgot won't work properly under smp version: -swapglobals disabled"
 #  error "Global-elfgot won't work properly under smp version: -swapglobals disabled"
    ^
global-elfcopy.C:26:4: error: #error "Global-elfcopy won't work properly under smp version: -copyglobals disabled"
 #  error "Global-elfcopy won't work properly under smp version: -copyglobals disabled"
    ^
Fatal Error by charmc in directory /mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/namd/charm-6.7.1/gni-crayxe-smp/tmp
   Command CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -I../bin/../include -D__CHARMC__=1 -O2 -U_FORTIFY_SOURCE -std=c++0x -c global-elfcopy.C -o global-elfcopy.o returned error code 1
charmc exiting...
ar: creating ../lib/loadsym.a
Fatal Error by charmc in directory /mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/namd/charm-6.7.1/gni-crayxe-smp/tmp
   Command CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -I../bin/../include -D__CHARMC__=1 -O2 -U_FORTIFY_SOURCE -std=c++0x -c global-elfgot.C -o global-elfgot.o returned error code 1
charmc exiting...
CHARMINC=..; . ../conv-config.sh;	\
	../../bin/charmc -seq -I. -shared -optimize -production   -Wno-error -o libqt.$CMK_SHARED_SUF qt.o qtmds.o
../bin/charmc  -optimize -production   -c charmmod.f90 || touch charmmod.o
../bin/charmc  -optimize -production   -I.   -c -o main.o main.C
/usr/bin/gmake -C libs/ck-libs/multicast
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/multicast'
../../../../bin/charmc -optimize -production   -c ckmulticast.ci
/bin/cp ckmulticast.h ../../../../include
/usr/bin/gmake -C libs/ck-libs/pythonCCS
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/pythonCCS'
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \
	if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional OPTS='-optimize -production  ' || exit 1); fi)
/usr/bin/gmake -C libs/ck-libs/ckloop
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/ckloop'
../../../../bin/charmc -optimize -production   -lpthread -c CkLoop.ci
../bin/charmc  -optimize -production   -cpmod ../include charm.M
Warning: building shared library is skipped, possibly due to not supported, check configuration files.
../../bin/charmc -seq -I. -optimize -production   -Wno-error -U_FORTIFY_SOURCE -o libqt.a qt.o qtmds.o 
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/pythonCCS'
../bin/charmc  -optimize -production   -I.   -c -o mpi-mainmodule.o mpi-mainmodule.C
../../../../bin/charmc -optimize -production   -lpthread -I../../../../tmp -o CkLoop.o CkLoop.C
../../../../bin/charmc -optimize -production   -I../../../../tmp -o ckmulticast.o ckmulticast.C
Appending .mod to object file name
ar: creating libqt.a
cp CkLoopAPI.h CkLoop.decl.h CkLoop.def.h ../../../../include/
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/QuickThreads'
cp -f QuickThreads/libqt.a ../lib/libckqt.a
(CHARMINC=.; . ./conv-config.sh; \
	  test -d ../lib_so && \
	  cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \
	  cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so/libckqt.$CMK_SHARED_SUF)
/bin/cp CkMulticast.decl.h ../../../../include
/bin/cp CkMulticast.def.h ../../../../include
../bin/charmc  -optimize -production   -o ../lib/libmoduleDummyLB.a DummyLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleGreedyLB.a GreedyLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleCommLB.a CommLB.o 
cp: cannot stat `QuickThreads/libqt.so': No such file or directory
gmake: [QUICK_THREADS] Error 1 (ignored)
ar: creating ../lib/libmoduleGreedyLB.a
ar: creating ../lib/libmoduleDummyLB.a
ar: creating ../lib/libmoduleCommLB.a
touch QUICK_THREADS
../bin/charmc  -optimize -production   -o ../lib/libmoduleRandCentLB.a RandCentLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleRefineLB.a RefineLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleRefineCommLB.a RefineCommLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleRotateLB.a RotateLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleDistributedLB.a DistributedLB.o 
ar: creating ../lib/libmoduleRandCentLB.a
ar: creating ../lib/libmoduleRefineLB.a
CkLoop.C: In member function 'void FuncCkLoop::createPThreads()':
CkLoop.C:111:68: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
         pthread_create(ndhThreads+i, &attr, ndhThreadWork, (void *)i);
                                                                    ^
ar: creating ../lib/libmoduleRefineCommLB.a
ar: creating ../lib/libmoduleRotateLB.a
ar: creating ../lib/libmoduleDistributedLB.a
../bin/charmc  -optimize -production   -o ../lib/libmoduleHybridLB.a HybridLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleComboCentLB.a ComboCentLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleRefineSwapLB.a RefineSwapLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleNeighborLB.a NeighborLB.o 
cp -f libmoduleRefineCommLB.dep ../lib/
../bin/charmc  -optimize -production   -o ../lib/libmoduleOrbLB.a OrbLB.o 
ar: creating ../lib/libmoduleHybridLB.a
ar: creating ../lib/libmoduleComboCentLB.a
ar: creating ../lib/libmoduleRefineSwapLB.a
ar: creating ../lib/libmoduleNeighborLB.a
ar: creating ../lib/libmoduleOrbLB.a
ar: creating ../lib/libmoduleBlockLB.a
../bin/charmc  -optimize -production   -o ../lib/libmoduleBlockLB.a BlockLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleGreedyCommLB.a GreedyCommLB.o manager.o
../bin/charmc  -optimize -production   -o ../lib/libmoduleNodeLevelLB.a NodeLevelLB.o 
../bin/charmc  -optimize -production   -o ../lib/libmoduleCommonLBs.a CommonLBs.o DummyLB.o GreedyLB.o CommLB.o RandCentLB.o RefineLB.o RefineCommLB.o RotateLB.o DistributedLB.o HybridLB.o ComboCentLB.o RefineSwapLB.o NeighborLB.o OrbLB.o BlockLB.o GreedyCommLB.o NodeLevelLB.o manager.o 
../bin/charmc  -optimize -production   -o ../lib/libck.a trace-common.o tracec.o tracef.o init.o register.o qd.o ck.o msgalloc.o ckfutures.o ckIgetControl.o debug-message.o debug-charm.o ckcallback.o cklocation.o ckarray.o ckreduction.o ckarrayreductionmgr.o tempo.o waitqd.o LBDatabase.o MetaBalancer.o lbdb.o lbdbf.o ckobjQ.o LBAgent.o LBProfit.o ckcheckpoint.o ckmemcheckpoint.o ckevacuation.o ckmessagelogging.o ckcausalmlog.o ckobjid.o LBDBManager.o LBComm.o LBObj.o LBMachineUtil.o CentralPredictor.o BaseLB.o CentralLB.o HybridBaseLB.o NborBaseLB.o DistBaseLB.o ckgraphTemp.o ckgraph.o LButil.o RefinerTemp.o Refiner.o RefinerApprox.o RefinerComm.o bitvecset.o ckset.o ckheap.o CommLBHeap.o NullLB.o LBSimulation.o modifyScheduler.o charmProjections.o cktiming.o ckbitvector.o pathHistory.o controlPoints.o arrayRedistributor.o cp_effects.o trace-controlPoints.o mpi-interoperate.o
../../../../bin/charmc -optimize -production   -lpthread -o ../../../../lib/libmoduleCkLoop.a CkLoop.o 
echo "const char * const CmiCommitID = \"`cat VERSION`\";" > commitid.c
../bin/charmc  -optimize -production   -o ../lib/libconv-util.a pup_util.o pup_toNetwork.o pup_toNetwork4.o pup_xlater.o pup_c.o pup_paged.o pup_cmialloc.o ckimage.o ckdll.o ckhashtable.o sockRoutines.o conv-lists.o RTH.o persist-comm.o mempool.o graph.o TopoManager.o CrayNid.o BGQTorus.o crc32.o  lz4.o partitioning_strategies.o hilbert.o
../bin/charmc  -optimize -production   -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a
ar: creating ../lib/libmoduleGreedyCommLB.a
ar: creating ../lib/libmoduleNodeLevelLB.a
ar: creating ../../../../lib/libmoduleCkLoop.a
ar: creating ../lib/libmoduleCommonLBs.a
ar: creating ../lib/libconv-utilf.a
../bin/charmc  -optimize -production   -o  ../lib/libtrace-converse.a trace-converse.o
../bin/charmc  -optimize -production   -o ../lib/libtracef_f.a tracef_f.o || touch ../lib/libtracef_f.a
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/ckloop'
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-default.a -DCMK_MEMORY_BUILD_DEFAULT libmemory-default.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os.a -DCMK_MEMORY_BUILD_OS libmemory-os.c
ar: creating ../lib/libconv-util.a
ar: creating ../lib/libtrace-converse.a
ar: creating ../lib/libtracef_f.a
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-gnu.a -DCMK_MEMORY_BUILD_GNU -touch-on-failure libmemory-gnu.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-verbose.a -DCMK_MEMORY_BUILD_VERBOSE -touch-on-failure libmemory-verbose.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-paranoid.a -DCMK_MEMORY_BUILD_PARANOID -touch-on-failure libmemory-paranoid.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-leak.a -DCMK_MEMORY_BUILD_LEAK -touch-on-failure libmemory-leak.c
ar: creating ../lib/libck.a
ar: creating ../lib/libmemory-default.a
In file included from memory-gnu.c:82:0,
                 from libmemory-gnu.c:544:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
                ^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
             if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
                                                              ^
In file included from libmemory-gnu.c:544:0:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
      CHUNK_ALIGN_MASK + 1];
      ^
ar: creating ../lib/libmemory-os.a
In file included from memory-gnu.c:82:0,
                 from memory-verbose.c:11,
                 from libmemory-verbose.c:555:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
                ^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
             if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
                                                              ^
In file included from memory-verbose.c:11:0,
                 from libmemory-verbose.c:555:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
      CHUNK_ALIGN_MASK + 1];
      ^
In file included from memory-gnu.c:82:0,
                 from memory-paranoid.c:258,
                 from libmemory-paranoid.c:559:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
                ^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
             if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
                                                              ^
In file included from memory-paranoid.c:258:0,
                 from libmemory-paranoid.c:559:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
      CHUNK_ALIGN_MASK + 1];
      ^
In file included from memory-gnu.c:82:0,
                 from memory-leak.c:21,
                 from libmemory-leak.c:563:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
                ^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
             if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
                                                              ^
In file included from memory-leak.c:21:0,
                 from libmemory-leak.c:563:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
      CHUNK_ALIGN_MASK + 1];
      ^
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-isomalloc.a -DCMK_MEMORY_BUILD_ISOMALLOC -touch-on-failure libmemory-isomalloc.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os-verbose.a     -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE    -touch-on-failure libmemory-os-verbose.c
In file included from memory-gnu.c:82:0,
                 from memory-isomalloc.c:14,
                 from libmemory-isomalloc.c:571:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
                ^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
             if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
                                                              ^
In file included from memory-isomalloc.c:14:0,
                 from libmemory-isomalloc.c:571:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
      CHUNK_ALIGN_MASK + 1];
      ^
ar: creating ../lib/libmemory-gnu.a
ar: creating ../lib/libmemory-verbose.a
../../../../bin/charmc -optimize -production   -o ../../../../lib/libmoduleCkMulticast.a ckmulticast.o 
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os-isomalloc.a   -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC  -touch-on-failure libmemory-os-isomalloc.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os-leak.a        -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK       -touch-on-failure libmemory-os-leak.c
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os-paranoid.a    -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID   -touch-on-failure libmemory-os-paranoid.c
ar: creating ../lib/libmemory-paranoid.a
ar: creating ../lib/libmemory-os-verbose.a
ar: creating ../lib/libmemory-leak.a
ar: creating ../../../../lib/libmoduleCkMulticast.a
ar: creating ../lib/libmemory-isomalloc.a
ar: creating ../lib/libmemory-os-isomalloc.a
ar: creating ../lib/libmemory-os-leak.a
../bin/charmc  -optimize -production   -I. -o ../lib/libmemory-os-lock.a        -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK       -touch-on-failure libmemory-os-lock.c
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/multicast'
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-default.a -DCMK_THREADS_BUILD_DEFAULT=1 libthreads-default.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-default-tls.a -DCMK_THREADS_BUILD_DEFAULT -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-default-tls.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-qt.a -DCMK_THREADS_BUILD_QT=1 libthreads-qt.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-qt-tls.a -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-qt-tls.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-context.a -DCMK_THREADS_BUILD_CONTEXT=1 -touch-on-failure libthreads-context.c
ar: creating ../lib/libmemory-os-paranoid.a
libmemory-os-lock.c:527:0: warning: "MEM_LOCK_AROUND" redefined
 #define MEM_LOCK_AROUND(code)   code
 ^
In file included from libmemory-os-lock.c:261:0:
memory-lock.c:3:0: note: this is the location of the previous definition
 #define MEM_LOCK_AROUND(code) \
 ^
ar: creating ../lib/libmemory-os-lock.a
ar: creating ../lib/libthreads-default-tls.a
ar: creating ../lib/libthreads-default.a
ar: creating ../lib/libthreads-qt.a
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-context-tls.a -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -touch-on-failure libthreads-context-tls.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-uJcontext.a -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-uJcontext-tls.a -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext-tls.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-pthreads.a -DCMK_THREADS_BUILD_PTHREADS=1 -touch-on-failure libthreads-pthreads.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-fibers.a -DCMK_THREADS_BUILD_FIBERS=1 -touch-on-failure libthreads-fibers.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-stackcopy.a -DCMK_THREADS_BUILD_STACKCOPY=1 -touch-on-failure libthreads-stackcopy.c
ar: creating ../lib/libthreads-qt-tls.a
ar: creating ../lib/libthreads-context-tls.a
ar: creating ../lib/libthreads-context.a
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-memoryalias.a -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-memoryalias.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-qt-memoryalias.a -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-qt-memoryalias.c
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-context-memoryalias.a -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_ALIAS_STACK=1 -touch-on-failure libthreads-context-memoryalias.c
ar: creating ../lib/libthreads-uJcontext.a
libthreads-fibers.c:1106:21: fatal error: windows.h: No such file or directory
 #include <windows.h>
                     ^
compilation terminated.
ar: creating ../lib/libthreads-fibers.a
ar: creating ../lib/libthreads-uJcontext-tls.a
ar: creating ../lib/libthreads-pthreads.a
ar: creating ../lib/libthreads-stackcopy.a
ar: creating ../lib/libthreads-memoryalias.a
../bin/charmc  -optimize -production   -IQuickThreads -I. -o ../lib/libthreads-uJcontext-memoryalias.a -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_ALIAS_STACK=1 -U_FORTIFY_SOURCE -touch-on-failure libthreads-uJcontext-memoryalias.c
../bin/charmc  -optimize -production   -o ../lib/libccs-client.a ccs-client.o
../bin/charmc  -optimize -production   -o ../lib/libconv-partition.a custom_partitioner.o set_partition_params.o
../bin/charmc  -optimize -production   -o ../lib/libconv-ldb.a topology.o generate.o edgelist.o
../bin/charmc -host  -language c -o conv-cpm -cp ../bin/ conv-cpm.o
../bin/charmc  -optimize -production   -o ../lib/libckf.a charmf.o charmmod.o || touch ../lib/libckf.a
ar: creating ../lib/libccs-client.a
ar: creating ../lib/libthreads-qt-memoryalias.a
ar: creating ../lib/libthreads-context-memoryalias.a
ar: creating ../lib/libconv-partition.a
ar: creating ../lib/libconv-ldb.a
ar: creating ../lib/libckf.a
ar: creating ../lib/libthreads-uJcontext-memoryalias.a
ar: creating ../lib/libckmain.a
../bin/charmc  -optimize -production   -o ../lib/libckmain.a main.o
../bin/charmc  -optimize -production   -o ../lib/libmpi-mainmodule.a mpi-mainmodule.o
../bin/charmc  -optimize -production   -I.   -c -o commitid.o commitid.c
ar: creating ../lib/libmpi-mainmodule.a
../bin/charmc  -optimize -production    -o ../lib/libconv-core.a convcore.o conv-conds.o queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o random.o debug-conv.o debug-conv++.o conv-ccs.o ccs-builtins.o middle-ccs.o traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o quiescence.o isomalloc.o mem-arena.o conv-counter.o global-nop.o cmipool.o cpuaffinity.o cputopology.o cmitls.o memoryaffinity.o commitid.o sdag.o conv-interoperate.o 
ar: creating ../lib/libconv-core.a
if [ -f charmrun ] ; then ( cp -f charmrun ../bin ) ; fi
/usr/bin/gmake -C libs/ck-libs/NDMeshStreamer
/usr/bin/gmake -C libs/ck-libs/io
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/io'
../../../../bin/charmc -optimize -production   -c ckio.ci
gmake[1]: Entering directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/NDMeshStreamer'
../../../../bin/charmc -optimize -production   -c NDMeshStreamer.ci
/bin/cp NDMeshStreamer.h ../../../../include
/bin/cp VirtualRouter.h ../../../../include
/bin/cp DataItemTypes.h ../../../../include
touch ckio.ci.stamp
cp ckio.h CkIO.decl.h CkIO.def.h CkIO_impl.decl.h CkIO_impl.def.h ../../../../include/
../../../../bin/charmc -optimize -production   -I../../../../tmp -o NDMeshStreamer.o NDMeshStreamer.C
/bin/cp NDMeshStreamer.decl.h ../../../../include
/bin/cp NDMeshStreamer.def.h ../../../../include
touch headers
../../../../bin/charmc -optimize -production   -c ckio.C
In file included from ckio.C:8:0:
CkIO_impl.decl.h:845:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
ckio.C:146:9: note: in expansion of macro 'Manager_SDAG_CODE'
         Manager_SDAG_CODE
         ^
../../../../bin/charmc -optimize -production   -o ../../../../lib/libmoduleNDMeshStreamer.a NDMeshStreamer.o
ar: creating ../../../../lib/libmoduleNDMeshStreamer.a
/bin/cp libmoduleNDMeshStreamer.dep ../../../../lib
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/NDMeshStreamer'
ar: creating ../../../../lib/libmoduleCkIO.a
../../../../bin/charmc -optimize -production   -o ../../../../lib/libmoduleCkIO.a ckio.o 
src/flipbinpdb.c: In function 'main':
src/flipbinpdb.c:30:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipdcd.c: In function 'main':
src/flipbinpdb.c:35:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:40:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:47:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:53:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipdcd.c:42:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:64:1: warning: incompatible implicit declaration of built-in function 'exit'
 exit(0);
 ^
gmake[1]: Leaving directory `/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0/NAMD_2.12b1_Source/charm-6.7.1/gni-crayxe-smp/tmp/libs/ck-libs/io'
touch charm++
-------------------------------------------------
charm++ built successfully.
Next, try out a sample program like gni-crayxe-smp/tests/charm++/simplearrayhello

Selected arch file arch/CRAY-XE-gnu.arch contains:

NAMD_ARCH = CRAY-XE
CHARMARCH = gemini_gni-crayxe-persistent-smp

# 
# The GNU compilers produce significantly faster NAMD binaries than PGI.
#
# You must run the following to switch CC/cc to the GNU compiler
# environment before building either Charm++ or NAMD:
#
#   module swap PrgEnv-pgi PrgEnv-gnu
#
# Users of psfgen might also need to do 'module remove acml' in order for 
# the the psfgen compilation to succeed.
#

CXX = CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID
CXXOPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer

CC = cc
COPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer


#
# ensure that required modules are loaded
#

$(info $(NAMD_PLATFORM))

loaded_modules := $(subst :, ,$(LOADEDMODULES))

module := $(filter rca/%,$(loaded_modules))
ifeq (,$(module))
  $(error module rca is not loaded)
else
  $(info found module $(module))
endif

module := $(filter PrgEnv-gnu/%,$(loaded_modules))
ifeq (,$(module))
  $(error module PrgEnv-gnu is not loaded)
else
  $(info found module $(module))
endif

Creating directory: CRAY-XE-gnu
Creating link: .. to .rootdir
Writing build options to CRAY-XE-gnu/Make.config
Using Charm++ 6.7.1 build found in main build directory
Using Tcl build found in main build directory
Linking Makefile
Linking Make.depends
Linking src directory
Linking plugins directory
Linking psfgen directory

Generated CRAY-XE-gnu/Make.config contains the following:

CHARMBASE = .rootdir/charm-6.7.1
include .rootdir/arch/CRAY-XE-gnu.arch
CHARMARCH = gni-crayxe-smp
CHARM = $(CHARMBASE)/$(CHARMARCH)
NAMD_PLATFORM = $(NAMD_ARCH)-ugni-smp-memopt
include .rootdir/arch/$(NAMD_ARCH).base
include .rootdir/arch/$(NAMD_ARCH).tcl
include .rootdir/arch/$(NAMD_ARCH).fftw3
MEMOPT=-DMEM_OPT_VERSION
TCLDIR = .rootdir/tcl
FFTDIR = /opt/cray/fftw/3.3.4.10/interlagos/lib/..

You are ready to run make in directory CRAY-XE-gnu now.

found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
found module fftw/3.3.4.10
if [ ! -d inc ]; then mkdir -p inc; fi
if [ ! -d obj ]; then mkdir -p obj; fi
cc -Isrc -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o flipdcd src/flipdcd.c || \
	echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \
	chmod +x flipdcd
cc -Isrc -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o flipbinpdb src/flipbinpdb.c || \
	echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \
	chmod +x flipbinpdb
cp .rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmrun charmrun
if [ ! -f inc/.exists ]; then touch inc/.exists; fi
if [ ! -f obj/.exists ]; then touch obj/.exists; fi
cpp -E -P  src/Node.ci > inc/Node.ci
cpp -E -P  src/PatchMgr.ci > inc/PatchMgr.ci
cpp -E -P  src/ComputeMoaMgr.ci > inc/ComputeMoaMgr.ci
cpp -E -P  src/ComputeMgr.ci > inc/ComputeMgr.ci
cpp -E -P  src/WorkDistrib.ci > inc/WorkDistrib.ci
cpp -E -P  src/ComputeMsmMgr.ci > inc/ComputeMsmMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/Node.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMsmMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMoaMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/PatchMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/WorkDistrib.ci
rm -f inc/PatchMgr.ci
rm -f inc/ComputeMoaMgr.ci
mv PatchMgr.def.h inc
mv ComputeMoaMgr.def.h inc
mv PatchMgr.decl.h inc
mv ComputeMoaMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C
cpp -E -P  src/ComputeMsmSerialMgr.ci > inc/ComputeMsmSerialMgr.ci
rm -f inc/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
cpp -E -P  src/ComputeFmmSerialMgr.ci > inc/ComputeFmmSerialMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMsmSerialMgr.ci
rm -f inc/ComputeMgr.ci
mv ComputeMgr.def.h inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeFmmSerialMgr.ci
mv ComputeMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm.o -c src/msm.c
rm -f inc/ComputeMsmMgr.ci
mv ComputeMsmMgr.def.h inc
mv ComputeMsmMgr.decl.h inc
rm -f inc/WorkDistrib.ci
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng.o -c src/msm_longrng.c
mv WorkDistrib.def.h inc
mv WorkDistrib.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_setup.o -c src/msm_setup.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng.o -c src/msm_shortrng.c
rm -f inc/ComputeMsmSerialMgr.ci
mv ComputeMsmSerialMgr.def.h inc
mv ComputeMsmSerialMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c
rm -f inc/ComputeFmmSerialMgr.ci
mv ComputeFmmSerialMgr.def.h inc
mv ComputeFmmSerialMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/wkfutils.o -c src/wkfutils.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/common.o -c src/common.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdlib.o -c src/dcdlib.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabf1D.o -c src/eabf1D.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabf2D.o -c src/eabf2D.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabffunc.o -c src/eabffunc.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabfTcl.o -c src/eabfTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/erf.o -c src/erf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fitrms.o -c src/fitrms.C
cpp -E -P  src/main.ci > inc/main.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/main.ci
cpp -E -P  src/ReductionMgr.ci > inc/ReductionMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ReductionMgr.ci
cpp -E -P  src/ProxyMgr.ci > inc/ProxyMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ProxyMgr.ci
src/common.C: In function 'void NAMD_err(const char*)':
src/common.C:103:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                     ^
src/common.C: In function 'int NAMD_file_exists(const char*)':
src/common.C:141:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                      ^
src/common.C: In function 'void NAMD_backup_file(const char*, const char*)':
src/common.C:170:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                        ^
Charmxi> 5: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented.
cpp -E -P  src/LdbCoordinator.ci > inc/LdbCoordinator.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/LdbCoordinator.ci
cpp -E -P  src/NamdCentLB.ci > inc/NamdCentLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdCentLB.ci
rm -f inc/main.ci
mv main.def.h inc
mv main.decl.h inc
cpp -E -P  src/NamdNborLB.ci > inc/NamdNborLB.ci
cpp -E -P  src/NamdHybridLB.ci > inc/NamdHybridLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdNborLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdHybridLB.ci
cpp -E -P  src/NamdDummyLB.ci > inc/NamdDummyLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdDummyLB.ci
rm -f inc/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
cpp -E -P  src/ComputePmeMgr.ci > inc/ComputePmeMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputePmeMgr.ci
rm -f inc/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
cpp -E -P  src/ComputePmeCUDAMgr.ci > inc/ComputePmeCUDAMgr.ci
rm -f inc/ProxyMgr.ci
mv ProxyMgr.def.h inc
mv ProxyMgr.decl.h inc
cpp -E -P  src/CudaPmeSolver.ci > inc/CudaPmeSolver.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputePmeCUDAMgr.ci
rm -f inc/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
cpp -E -P  src/PmeSolver.ci > inc/PmeSolver.ci
cpp -E -P  src/ComputeCUDAMgr.ci > inc/ComputeCUDAMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/PmeSolver.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CudaPmeSolver.ci
rm -f inc/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
cp src/OptPme.ci inc
rm -f inc/NamdHybridLB.ci
mv NamdHybridLB.def.h inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/OptPme.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeCUDAMgr.ci
mv NamdHybridLB.decl.h inc
cp src/fftlib.ci inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/fftlib.ci
rm -f inc/NamdDummyLB.ci
mv NamdDummyLB.def.h inc
mv NamdDummyLB.decl.h inc
cpp -E -P  src/ComputeExtMgr.ci > inc/ComputeExtMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeExtMgr.ci
rm -f inc/ComputePmeCUDAMgr.ci
mv ComputePmeCUDAMgr.def.h inc
mv ComputePmeCUDAMgr.decl.h inc
cpp -E -P  src/ComputeQMMgr.ci > inc/ComputeQMMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeQMMgr.ci
rm -f inc/CudaPmeSolver.ci
mv CudaPmeSolver.def.h inc
mv CudaPmeSolver.decl.h inc
cpp -E -P  src/ComputeGBISserMgr.ci > inc/ComputeGBISserMgr.ci
rm -f inc/ComputeCUDAMgr.ci
mv ComputeCUDAMgr.def.h inc
mv ComputeCUDAMgr.decl.h inc
cpp -E -P  src/CollectionMgr.ci > inc/CollectionMgr.ci
rm -f inc/OptPme.ci
mv OptPmeMgr.def.h inc
mv OptPmeMgr.decl.h inc
cpp -E -P  src/CollectionMaster.ci > inc/CollectionMaster.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeGBISserMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CollectionMgr.ci
rm -f inc/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CollectionMaster.ci
cpp -E -P  src/BroadcastMgr.ci > inc/BroadcastMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/BroadcastMgr.ci
rm -f inc/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
cpp -E -P  src/Sync.ci > inc/Sync.ci
rm -f inc/fftlib.ci
mv PmeFFTLib.def.h inc
mv PmeFFTLib.decl.h inc
cpp -E -P  src/ParallelIOMgr.ci > inc/ParallelIOMgr.ci
rm -f inc/PmeSolver.ci
mv PmeSolver.def.h inc
mv PmeSolver.decl.h inc
cpp -E -P  src/DataExchanger.ci > inc/DataExchanger.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ParallelIOMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/Sync.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/DataExchanger.ci
rm -f inc/ComputeQMMgr.ci
mv ComputeQMMgr.def.h inc
mv ComputeQMMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/memusage.o -c src/memusage.C
rm -f inc/ComputeGBISserMgr.ci
rm -f inc/CollectionMgr.ci
mv ComputeGBISserMgr.def.h inc
mv CollectionMgr.def.h inc
mv ComputeGBISserMgr.decl.h inc
mv CollectionMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/strlib.o -c src/strlib.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgSeven.o -c src/AlgSeven.C
rm -f inc/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgRecBisection.o -c src/AlgRecBisection.C
rm -f inc/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgNbor.o -c src/AlgNbor.C
rm -f inc/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AtomMap.o -c src/AtomMap.C
rm -f inc/DataExchanger.ci
mv DataExchanger.def.h inc
mv DataExchanger.decl.h inc
rm -f inc/ParallelIOMgr.ci
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
mv ParallelIOMgr.def.h inc
mv ParallelIOMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastClient.o -c src/BroadcastClient.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMaster.o -c src/CollectionMaster.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMgr.o -c src/CollectionMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Communicate.o -c src/Communicate.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Compute.o -c src/Compute.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAngles.o -c src/ComputeAngles.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAniso.o -c src/ComputeAniso.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeBonds.o -c src/ComputeBonds.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForce.o -c src/ComputeConsForce.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCUDAMgr.o -c src/ComputeCUDAMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPME.o -c src/ComputeDPME.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEField.o -c src/ComputeEField.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEwald.o -c src/ComputeEwald.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeExt.o -c src/ComputeExt.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeQM.o -c src/ComputeQM.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBISser.o -c src/ComputeGBISser.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBIS.o -c src/ComputeGBIS.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeLCPO.o -c src/ComputeLCPO.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeImpropers.o -c src/ComputeImpropers.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGridForce.o -c src/ComputeGridForce.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMap.o -c src/ComputeMap.C
src/ComputeMap.C: In member function 'void ComputeMap::printComputeMap()':
src/ComputeMap.C:230:7: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
 fname = "computeMap.opt";
       ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMgr.o -c src/ComputeMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from src/ComputePmeCUDA.h:12,
                 from src/ComputeMgr.C:57:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/DataExchanger.h:12:0,
                 from src/colvarproxy_namd.h:24,
                 from src/GlobalMasterColvars.h:7,
                 from src/ComputeMgr.C:98:
inc/DataExchanger.decl.h:863:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/DataExchanger.h:61:5: note: in expansion of macro 'DataExchanger_SDAG_CODE'
     DataExchanger_SDAG_CODE;
     ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C
In file included from src/ComputeNonbondedMICKernelBase2.h:218:0,
                 from src/ComputeNonbondedMICKernelBase.h:1555,
                 from src/ComputeNonbondedMICKernel.C:2647:
src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space
                    pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \ 
 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatch.o -c src/ComputePatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatchPair.o -c src/ComputePatchPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePme.o -c src/ComputePme.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePmeCUDA.o -c src/ComputePmeCUDA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePmeCUDAMgr.o -c src/ComputePmeCUDAMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPme.o -c src/OptPme.C
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from src/ComputePmeCUDA.h:12,
                 from src/ComputePmeCUDA.C:10:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePme.C:36:0:
inc/ComputePmeMgr.decl.h:1731:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePme.C:4600:5: note: in expansion of macro 'PmeYPencil_SDAG_CODE'
     PmeYPencil_SDAG_CODE
     ^
inc/ComputePmeMgr.decl.h:2219:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePme.C:4663:5: note: in expansion of macro 'PmeXPencil_SDAG_CODE'
     PmeXPencil_SDAG_CODE
     ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/ComputePmeCUDAMgr.C:14:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeRestraints.o -c src/ComputeRestraints.C
In file included from inc/OptPmeMgr.decl.h:7:0,
                 from src/OptPme.h:21,
                 from src/OptPme.C:28:
inc/PmeFFTLib.decl.h:1442:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/fftlib.h:144:5: note: in expansion of macro 'OptPmeYPencil_SDAG_CODE'
     OptPmeYPencil_SDAG_CODE
     ^
inc/PmeFFTLib.decl.h:2048:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/fftlib.h:174:5: note: in expansion of macro 'OptPmeXPencil_SDAG_CODE'
     OptPmeXPencil_SDAG_CODE
     ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeStir.o -c src/ComputeStir.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeTclBC.o -c src/ComputeTclBC.C
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)':
src/ComputeTclBC.C:145:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         TCL_VOLATILE);
                     ^
src/ComputeTclBC.C:156:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         TCL_VOLATILE);
                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:166:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:184:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:196:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:236:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:241:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:272:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:320:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:332:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:337:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:349:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:354:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:378:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
                                                           ^
src/ComputeTclBC.C:384:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:398:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:404:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE);
                                                            ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeThole.o -c src/ComputeThole.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ConfigList.o -c src/ConfigList.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/Controller.o -c src/Controller.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaComputeNonbonded.o -c src/CudaComputeNonbonded.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaPmeSolver.o -c src/CudaPmeSolver.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaPmeSolverUtil.o -c src/CudaPmeSolverUtil.C
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaPmeSolver.C:5:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaComputeNonbonded.C:18:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaPmeSolverUtil.C:7:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaUtils.o -c src/CudaUtils.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ccsinterface.o -c src/ccsinterface.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataStream.o -c src/DataStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DeviceCUDA.o -c src/DeviceCUDA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DumpBench.o -c src/DumpBench.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C
src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:205:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (Mass < 0) {EarlyExit("Negative Mass", AtomID);};
                                                     ^
src/FreeEnergyRestrain.C:213:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
                                                     ^
src/FreeEnergyRestrain.C:218:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);}
                                                         ^
src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:247:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);}
                                                              ^
src/FreeEnergyRestrain.C:251:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
                                                       ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fstream_namd.o -c src/fstream_namd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMaster.o -c src/GlobalMaster.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:44:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:58:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"atom not found",TCL_VOLATILE);
                                                       ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:74:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:100:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:150:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:163:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:176:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:190:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_enabletotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:261:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_disabletotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:274:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:289:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:296:91: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"must call enabletotalforces before loadtotalforces",TCL_VOLATILE);
                                                                                           ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:361:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:419:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:464:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:483:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
                                                           ^
src/GlobalMasterTcl.C:491:72: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE);
                                                                        ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvar.o -c src/colvar.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvaratoms.o -c src/colvaratoms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias.o -c src/colvarbias.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_abf.o -c src/colvarbias_abf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_alb.o -c src/colvarbias_alb.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_histogram.o -c src/colvarbias_histogram.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_meta.o -c src/colvarbias_meta.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp.o -c src/colvarcomp.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvardeps.o -c src/colvardeps.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvargrid.o -c src/colvargrid.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarmodule.o -c src/colvarmodule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarparse.o -c src/colvarparse.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarscript.o -c src/colvarscript.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvartypes.o -c src/colvartypes.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarvalue.o -c src/colvarvalue.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GridForceGrid.o -c src/GridForceGrid.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GromacsTopFile.o -c src/GromacsTopFile.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/heap.o -c src/heap.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/HomePatch.o -c src/HomePatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/IMDOutput.o -c src/IMDOutput.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/InfoStream.o -c src/InfoStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LdbCoordinator.o -c src/LdbCoordinator.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LJTable.o -c src/LJTable.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Measure.o -c src/Measure.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MGridforceParams.o -c src/MGridforceParams.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MStream.o -c src/MStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C
src/Measure.C: In function 'int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/Measure.C:114:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE);
                                                                 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule.o -c src/Molecule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule2.o -c src/Molecule2.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GoMolecule.o -c src/GoMolecule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MoleculeQM.o -c src/MoleculeQM.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdCentLB.o -c src/NamdCentLB.C
src/Molecule.C: In member function 'void Molecule::read_mol_signatures(char*, Parameters*, ConfigList*)':
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         char *tmpstr[]={"RIGID_NONE", "RIGID_ALL", "RIGID_WATER"};
                                                                 ^
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdNborLB.o -c src/NamdNborLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdHybridLB.o -c src/NamdHybridLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdDummyLB.o -c src/NamdDummyLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdState.o -c src/NamdState.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdOneTools.o -c src/NamdOneTools.C
cpp -E -P  src/ComputeGridForceMgr.ci > inc/ComputeGridForceMgr.ci
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Output.o -c src/Output.C
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeGridForceMgr.ci
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Parameters.o -c src/Parameters.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParseOptions.o -c src/ParseOptions.C
rm -f inc/ComputeGridForceMgr.ci
mv ComputeGridForceMgr.def.h inc
mv ComputeGridForceMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Patch.o -c src/Patch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMgr.o -c src/PatchMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMap.o -c src/PatchMap.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDB.o -c src/PDB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDBData.o -c src/PDBData.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeKSpace.o -c src/PmeKSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeRealSpace.o -c src/PmeRealSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeSolver.o -c src/PmeSolver.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C
In file included from src/PmeSolver.h:7:0,
                 from src/PmeSolver.C:4:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyMgr.o -c src/ProxyMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyPatch.o -c src/ProxyPatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Rebalancer.o -c src/Rebalancer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RecBisection.o -c src/RecBisection.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ReductionMgr.o -c src/ReductionMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineOnly.o -c src/RefineOnly.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineTorusLB.o -c src/RefineTorusLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ScriptTcl.o -c src/ScriptTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/Sequencer.o -c src/Sequencer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Set.o -c src/Set.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Settle.o -c src/Settle.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/SimParameters.o -c src/SimParameters.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SortAtoms.o -c src/SortAtoms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sync.o -c src/Sync.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TclCommands.o -c src/TclCommands.C
src/SimParameters.C: In member function 'void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)':
src/SimParameters.C:5925:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case CUBIC:    approx_str = "C1 CUBIC";   break;
                                  ^
src/SimParameters.C:5926:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case QUINTIC:  approx_str = "C1 QUINTIC"; break;
                                  ^
src/SimParameters.C:5927:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case QUINTIC2: approx_str = "C2 QUINTIC"; break;
                                  ^
src/SimParameters.C:5928:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case SEPTIC:   approx_str = "C1 SEPTIC";  break;
                                  ^
src/SimParameters.C:5929:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case SEPTIC3:  approx_str = "C3 SEPTIC";  break;
                                  ^
src/SimParameters.C:5930:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case NONIC:    approx_str = "C1 NONIC";   break;
                                  ^
src/SimParameters.C:5931:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case NONIC4:   approx_str = "C4 NONIC";   break;
                                  ^
src/SimParameters.C:5932:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case C1HERMITE:approx_str = "C1 HERMITE"; break;
                                  ^
src/SimParameters.C:5933:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        default:       approx_str = "UNKNOWN";    break;
                                  ^
src/SimParameters.C:5936:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR2:  split_str = "C2 TAYLOR";   break;
                                 ^
src/SimParameters.C:5937:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR3:  split_str = "C3 TAYLOR";   break;
                                 ^
src/SimParameters.C:5938:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR4:  split_str = "C4 TAYLOR";   break;
                                 ^
src/SimParameters.C:5939:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR5:  split_str = "C5 TAYLOR";   break;
                                 ^
src/SimParameters.C:5940:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR6:  split_str = "C6 TAYLOR";   break;
                                 ^
src/SimParameters.C:5941:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR7:  split_str = "C7 TAYLOR";   break;
                                 ^
src/SimParameters.C:5942:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR8:  split_str = "C8 TAYLOR";   break;
                                 ^
src/SimParameters.C:5943:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        default:       split_str = "UNKNOWN";     break;
                                 ^
In file included from src/SimParameters.h:21:0,
                 from src/GridForceGrid.h:14,
                 from src/Molecule.h:31,
                 from src/ComputeNonbondedUtil.h:16,
                 from src/SimParameters.C:21:
src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)':
src/MGridforceParams.h:18:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
 #define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams"
                                     ^
src/SimParameters.C:6178:25: note: in expansion of macro 'MGRIDFORCEPARAMS_DEFAULTKEY'
     char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY;
                         ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TorusLB.o -c src/TorusLB.C
src/SimParameters.C: In member function 'void SimParameters::print_mgrid_params()':
src/SimParameters.C:6621:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     char *qcol_msg = "Use atom charge";
                      ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_python(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:356:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   Tcl_SetResult(interp,"python not enabled",TCL_VOLATILE);
                                                         ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_startup(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:365:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:405:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:414:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:423:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:432:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:441:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaEval(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:461:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: dest script",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C:450:63: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"negative replica index",TCL_VOLATILE); \
                                                               ^
src/ScriptTcl.C:465:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(dest);
   ^
src/ScriptTcl.C:454:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"non-existent replica index",TCL_VOLATILE); \
                                                                   ^
src/ScriptTcl.C:465:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(dest);
   ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaYield(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:485:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: ?seconds?",TCL_VOLATILE);
                                                        ^
src/ScriptTcl.C:491:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"args: ?seconds?",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:507:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE);
                                                                 ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:536:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE);
                                                        ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:549:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: source",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:570:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:583:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:587:75: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE);
                                                                           ^
src/ScriptTcl.C:592:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE);
                                                                      ^
src/ScriptTcl.C:598:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE);
                                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:641:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:645:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:650:61: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE);
                                                             ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:678:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:682:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE);
                                                                      ^
src/ScriptTcl.C:688:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE);
                                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:725:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:801:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:816:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:826:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:853:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:861:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
                                                                   ^
src/ScriptTcl.C:866:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE);
                                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:876:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:884:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C:888:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE);
                                                                 ^
src/ScriptTcl.C:892:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
                                                                   ^
src/ScriptTcl.C:896:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE);
                                                                ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:906:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:914:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:924:79: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args for NAMD config parameter",TCL_VOLATILE);
                                                                               ^
src/ScriptTcl.C:930:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter name too long for NAMD config parameter",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:942:86: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"parameter unknown for NAMD config parameter",TCL_VOLATILE);
                                                                                      ^
src/ScriptTcl.C:951:91: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value too long for NAMD config parameter",TCL_VOLATILE);
                                                                                           ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:970:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:987:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1004:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1008:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
                                                      ^
src/ScriptTcl.C:1017:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         "first arg not norepeat",TCL_VOLATILE);
                                              ^
src/ScriptTcl.C:1027:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
                                                                             ^
src/ScriptTcl.C:1032:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:1036:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                            ^
src/ScriptTcl.C:1040:107: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"run called with minimization enabled; use minimize command instead",TCL_VOLATILE);
                                                                                                           ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1066:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1074:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
                                                                             ^
src/ScriptTcl.C:1079:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:1083:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1108:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
                                                       ^
src/ScriptTcl.C:1120:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE);
                                                              ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1139:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1147:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"syntax is 'move <id> to|by {<x> <y> <z>}'",TCL_VOLATILE);
                                                                                  ^
src/ScriptTcl.C:1157:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE);
                                                                    ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1185:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1189:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
                                                      ^
src/ScriptTcl.C:1194:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"file name too long",TCL_VOLATILE);
                                                           ^
src/ScriptTcl.C:1207:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         "first arg not withforces or onlyforces",TCL_VOLATILE);
                                                              ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1246:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1273:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1278:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:1290:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE);
                                                                                  ^
src/ScriptTcl.C:1302:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE);
                                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1320:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1371:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1388:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1413:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1427:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpointReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1452:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: <key> ?<replica> or global?",TCL_VOLATILE);
                                                                          ^
src/ScriptTcl.C:1461:76: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"args: <key> ?<replica> or global?",TCL_VOLATILE);
                                                                            ^
src/ScriptTcl.C:1467:115: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"replicaUniformPatchGrids is required for checkpointing on other replicas",TCL_VOLATILE);
                                                                                                                   ^
src/ScriptTcl.C:450:63: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"negative replica index",TCL_VOLATILE); \
                                                               ^
src/ScriptTcl.C:1472:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(replica);
   ^
src/ScriptTcl.C:454:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"non-existent replica index",TCL_VOLATILE); \
                                                                   ^
src/ScriptTcl.C:1472:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(replica);
   ^
src/ScriptTcl.C:1485:100: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"checkpointStore/Load/Swap/Free called via unrecognized name",TCL_VOLATILE);
                                                                                                    ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaDcdFile(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1495:94: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   Tcl_SetResult(interp,"replicaDcdFile not supported in memory-optimized builds",TCL_VOLATILE);
                                                                                              ^
src/ScriptTcl.C:1503:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: <index>|off ?<filename>?",TCL_VOLATILE);
                                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1520:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1554:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reloadStructure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1907:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"unknown structure",TCL_VOLATILE);
                                                            ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/WorkDistrib.o -c src/WorkDistrib.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pub3dfft.o -c src/pub3dfft.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/vmdsock.o -c src/vmdsock.C
src/parm.C: In member function 'int parm::readparm(char*)':
src/parm.C:184:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"TITLE"))
                           ^
src/parm.C:194:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"POINTERS"))
                               ^
src/parm.C:318:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ATOM_NAME"))
                               ^
src/parm.C:332:28: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"CHARGE"))
                            ^
src/parm.C:350:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"MASS"))
                          ^
src/parm.C:368:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ATOM_TYPE_INDEX"))
                                      ^
src/parm.C:389:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"NUMBER_EXCLUDED_ATOMS"))
                                            ^
src/parm.C:410:43: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"NONBONDED_PARM_INDEX"))
                                           ^
src/parm.C:431:35: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"RESIDUE_LABEL"))
                                   ^
src/parm.C:443:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"RESIDUE_POINTER"))
                                      ^
src/parm.C:465:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"BOND_FORCE_CONSTANT"))
                                         ^
src/parm.C:483:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"BOND_EQUIL_VALUE"))
                                      ^
src/parm.C:501:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ANGLE_FORCE_CONSTANT"))
                                          ^
src/parm.C:519:39: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ANGLE_EQUIL_VALUE"))
                                       ^
src/parm.C:537:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT"))
                                             ^
src/parm.C:555:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_PERIODICITY"))
                                          ^
src/parm.C:573:36: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_PHASE"))
                                    ^
src/parm.C:591:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"SOLTY"))
                           ^
src/parm.C:610:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"LENNARD_JONES_ACOEF"))
                                         ^
src/parm.C:629:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"LENNARD_JONES_BCOEF"))
                                         ^
src/parm.C:650:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"BONDS_INC_HYDROGEN"))
                                         ^
src/parm.C:682:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"BONDS_WITHOUT_HYDROGEN"))
                                             ^
src/parm.C:715:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ANGLES_INC_HYDROGEN"))
                                          ^
src/parm.C:750:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN"))
                                              ^
src/parm.C:786:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"DIHEDRALS_INC_HYDROGEN"))
                                             ^
src/parm.C:823:49: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN"))
                                                 ^
src/parm.C:855:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"EXCLUDED_ATOMS_LIST"))
                                          ^
src/parm.C:876:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBOND_ACOEF"))
                                 ^
src/parm.C:894:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBOND_BCOEF"))
                                 ^
src/parm.C:912:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBCUT"))
                           ^
src/parm.C:933:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"AMBER_ATOM_TYPE"))
                                     ^
src/parm.C:945:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"TREE_CHAIN_CLASSIFICATION"))
                                               ^
src/parm.C:957:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"JOIN_ARRAY"))
                                 ^
src/parm.C:980:29: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"IROTAT"))
                             ^
src/parm.C:1009:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { if (!moveto(file,"SOLVENT_POINTERS"))
                                        ^
src/parm.C:1034:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { if (!moveto(file,"ATOMS_PER_MOLECULE"))
                                          ^
src/parm.C:1050:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    if (!moveto(file,"BOX_DIMENSIONS"))
                                     ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/parm.o -c src/parm.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/imd.o -c src/imd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CompressPsf.o -c src/CompressPsf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PluginIOMgr.o -c src/PluginIOMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataExchanger.o -c src/DataExchanger.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from inc/main.decl.h:109,
                 from src/WorkDistrib.C:30:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/charmm_file.o -c sb/src/charmm_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/extract_alias.o -c sb/src/extract_alias.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/hash.o -c sb/src/hash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/hasharray.o -c sb/src/hasharray.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/memarena.o -c sb/src/memarena.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/pdb_file.o -c sb/src/pdb_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/psf_file.o -c sb/src/psf_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_defs.o -c sb/src/topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol.o -c sb/src/topo_mol.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/stringhash.o -c sb/src/stringhash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/tcl_main.o -c sb/src/tcl_main.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/sortreplicas.o -c src/sortreplicas.c
src/sortreplicas.c: In function 'main':
src/sortreplicas.c:52:5: warning: incompatible implicit declaration of built-in function 'exit'
     exit(-1);
     ^
src/sortreplicas.c:85:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:92:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:102:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:110:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:131:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:138:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:146:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:172:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:178:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:188:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:193:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:219:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:225:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:259:3: warning: incompatible implicit declaration of built-in function 'free'
   free(frame.coords);
   ^
src/sortreplicas.c:281:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(0);
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMoa.o -c src/ComputeMoa.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsm.o -c src/ComputeMsm.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/main.o -c src/main.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/mainfunc.o -c src/mainfunc.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BackEnd.o -c src/BackEnd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Node.o -c src/Node.C
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -L.rootdir/tcl/lib -ltcl8.5 -ldl  -lm
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o sortreplicas obj/sortreplicas.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -lm
rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"bwjenkins\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3   -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/buildinfo.o -c obj/buildinfo.C
const char *namd_build_date =  "Sat Mar 17 19:50:10 CDT 2018";
const char *namd_build_user =  "bwjenkins";
const char *namd_build_machine =  "h2ologin2";
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc -verbose -ld++-option \
	'-I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer' \
	-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast -module CkLoop -language charm++ \
	obj/buildinfo.o \
	obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o  \
	 \
	 \
	 \
	 \
	 \
	-L.rootdir/tcl/lib -ltcl8.5 -ldl \
	 \
	-L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -lfftw3f \
	obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \
	obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o \
	 \
	 \
	-lm -o namd2
Verbose mode set
Adding file obj/buildinfo.o...
Adding file obj/ComputeMoa.o...
Adding file obj/ComputeMsm.o...
Adding file obj/ComputeMsmMsa.o...
Adding file obj/ComputeMsmSerial.o...
Adding file obj/ComputeFmmSerial.o...
Adding file obj/msm.o...
Adding file obj/msm_longrng.o...
Adding file obj/msm_longrng_sprec.o...
Adding file obj/msm_setup.o...
Adding file obj/msm_shortrng.o...
Adding file obj/msm_shortrng_sprec.o...
Adding file obj/wkfutils.o...
Adding file obj/common.o...
Adding file obj/dcdlib.o...
Adding file obj/eabf1D.o...
Adding file obj/eabf2D.o...
Adding file obj/eabffunc.o...
Adding file obj/eabfTcl.o...
Adding file obj/erf.o...
Adding file obj/fitrms.o...
Adding file obj/main.o...
Adding file obj/mainfunc.o...
Adding file obj/memusage.o...
Adding file obj/strlib.o...
Adding file obj/AlgSeven.o...
Adding file obj/AlgRecBisection.o...
Adding file obj/AlgNbor.o...
Adding file obj/AtomMap.o...
Adding file obj/BackEnd.o...
Adding file obj/BroadcastMgr.o...
Adding file obj/BroadcastClient.o...
Adding file obj/CollectionMaster.o...
Adding file obj/CollectionMgr.o...
Adding file obj/Communicate.o...
Adding file obj/Compute.o...
Adding file obj/ComputeAngles.o...
Adding file obj/ComputeAniso.o...
Adding file obj/ComputeBonds.o...
Adding file obj/ComputeConsForce.o...
Adding file obj/ComputeConsForceMsgs.o...
Adding file obj/ComputeCrossterms.o...
Adding file obj/ComputeCUDAMgr.o...
Adding file obj/ComputeCylindricalBC.o...
Adding file obj/ComputeDihedrals.o...
Adding file obj/ComputeDPME.o...
Adding file obj/ComputeDPMEMsgs.o...
Adding file obj/ComputeDPMTA.o...
Adding file obj/ComputeEField.o...
Adding file obj/ComputeEwald.o...
Adding file obj/ComputeExt.o...
Adding file obj/ComputeQM.o...
Adding file obj/ComputeGBISser.o...
Adding file obj/ComputeGBIS.o...
Adding file obj/ComputeGromacsPair.o...
Adding file obj/ComputeLCPO.o...
Adding file obj/ComputeFullDirect.o...
Adding file obj/ComputeHomePatch.o...
Adding file obj/ComputeHomePatches.o...
Adding file obj/ComputeImpropers.o...
Adding file obj/ComputeGlobal.o...
Adding file obj/ComputeGlobalMsgs.o...
Adding file obj/ComputeGridForce.o...
Adding file obj/ComputeMap.o...
Adding file obj/ComputeMgr.o...
Adding file obj/ComputeNonbondedSelf.o...
Adding file obj/ComputeNonbondedPair.o...
Adding file obj/ComputeNonbondedUtil.o...
Adding file obj/ComputeNonbondedStd.o...
Adding file obj/ComputeNonbondedFEP.o...
Adding file obj/ComputeNonbondedGo.o...
Adding file obj/ComputeNonbondedTI.o...
Adding file obj/ComputeNonbondedLES.o...
Adding file obj/ComputeNonbondedPProf.o...
Adding file obj/ComputeNonbondedTabEnergies.o...
Adding file obj/ComputeNonbondedCUDA.o...
Adding file obj/ComputeNonbondedCUDAExcl.o...
Adding file obj/ComputeNonbondedMIC.o...
Adding file obj/ComputeNonbondedMICKernel.o...
Adding file obj/ComputePatch.o...
Adding file obj/ComputePatchPair.o...
Adding file obj/ComputePme.o...
Adding file obj/ComputePmeCUDA.o...
Adding file obj/ComputePmeCUDAMgr.o...
Adding file obj/OptPme.o...
Adding file obj/OptPmeRealSpace.o...
Adding file obj/ComputeRestraints.o...
Adding file obj/ComputeSphericalBC.o...
Adding file obj/ComputeStir.o...
Adding file obj/ComputeTclBC.o...
Adding file obj/ComputeThole.o...
Adding file obj/ConfigList.o...
Adding file obj/Controller.o...
Adding file obj/CudaComputeNonbonded.o...
Adding file obj/CudaPmeSolver.o...
Adding file obj/CudaPmeSolverUtil.o...
Adding file obj/CudaUtils.o...
Adding file obj/ccsinterface.o...
Adding file obj/DataStream.o...
Adding file obj/DeviceCUDA.o...
Adding file obj/DumpBench.o...
Adding file obj/FreeEnergyAssert.o...
Adding file obj/FreeEnergyGroup.o...
Adding file obj/FreeEnergyLambda.o...
Adding file obj/FreeEnergyLambdMgr.o...
Adding file obj/FreeEnergyParse.o...
Adding file obj/FreeEnergyRestrain.o...
Adding file obj/FreeEnergyRMgr.o...
Adding file obj/FreeEnergyVector.o...
Adding file obj/fstream_namd.o...
Adding file obj/GlobalMaster.o...
Adding file obj/GlobalMasterServer.o...
Adding file obj/GlobalMasterTest.o...
Adding file obj/GlobalMasterIMD.o...
Adding file obj/GlobalMasterTcl.o...
Adding file obj/GlobalMasterSMD.o...
Adding file obj/GlobalMasterTMD.o...
Adding file obj/Matrix4Symmetry.o...
Adding file obj/GlobalMasterSymmetry.o...
Adding file obj/GlobalMasterFreeEnergy.o...
Adding file obj/GlobalMasterEasy.o...
Adding file obj/GlobalMasterMisc.o...
Adding file obj/colvar.o...
Adding file obj/colvaratoms.o...
Adding file obj/colvarbias.o...
Adding file obj/colvarbias_abf.o...
Adding file obj/colvarbias_alb.o...
Adding file obj/colvarbias_histogram.o...
Adding file obj/colvarbias_meta.o...
Adding file obj/colvarbias_restraint.o...
Adding file obj/colvarcomp.o...
Adding file obj/colvarcomp_angles.o...
Adding file obj/colvarcomp_coordnums.o...
Adding file obj/colvarcomp_distances.o...
Adding file obj/colvarcomp_protein.o...
Adding file obj/colvarcomp_rotations.o...
Adding file obj/colvardeps.o...
Adding file obj/colvargrid.o...
Adding file obj/colvarmodule.o...
Adding file obj/colvarparse.o...
Adding file obj/colvarproxy_namd.o...
Adding file obj/colvarscript.o...
Adding file obj/colvartypes.o...
Adding file obj/colvarvalue.o...
Adding file obj/GridForceGrid.o...
Adding file obj/GromacsTopFile.o...
Adding file obj/heap.o...
Adding file obj/HomePatch.o...
Adding file obj/IMDOutput.o...
Adding file obj/InfoStream.o...
Adding file obj/LdbCoordinator.o...
Adding file obj/LJTable.o...
Adding file obj/Measure.o...
Adding file obj/MGridforceParams.o...
Adding file obj/MStream.o...
Adding file obj/MigrateAtomsMsg.o...
Adding file obj/Molecule.o...
Adding file obj/Molecule2.o...
Adding file obj/GoMolecule.o...
Adding file obj/MoleculeQM.o...
Adding file obj/NamdCentLB.o...
Adding file obj/NamdNborLB.o...
Adding file obj/NamdHybridLB.o...
Adding file obj/NamdDummyLB.o...
Adding file obj/NamdState.o...
Adding file obj/NamdOneTools.o...
Adding file obj/Node.o...
Adding file obj/Output.o...
Adding file obj/Parameters.o...
Adding file obj/ParseOptions.o...
Adding file obj/Patch.o...
Adding file obj/PatchMgr.o...
Adding file obj/PatchMap.o...
Adding file obj/PDB.o...
Adding file obj/PDBData.o...
Adding file obj/PmeKSpace.o...
Adding file obj/PmeRealSpace.o...
Adding file obj/PmeSolver.o...
Adding file obj/ProcessorPrivate.o...
Adding file obj/ProxyMgr.o...
Adding file obj/ProxyPatch.o...
Adding file obj/Rebalancer.o...
Adding file obj/RecBisection.o...
Adding file obj/ReductionMgr.o...
Adding file obj/RefineOnly.o...
Adding file obj/RefineTorusLB.o...
Adding file obj/ScriptTcl.o...
Adding file obj/Sequencer.o...
Adding file obj/Set.o...
Adding file obj/Settle.o...
Adding file obj/SimParameters.o...
Adding file obj/SortAtoms.o...
Adding file obj/Sync.o...
Adding file obj/TclCommands.o...
Adding file obj/TorusLB.o...
Adding file obj/WorkDistrib.o...
Adding file obj/pub3dfft.o...
Adding file obj/vmdsock.o...
Adding file obj/parm.o...
Adding file obj/imd.o...
Adding file obj/CompressPsf.o...
Adding file obj/PluginIOMgr.o...
Adding file obj/DataExchanger.o...
Adding file obj/ParallelIOMgr.o...
Adding file obj/dcdplugin.o...
Adding file obj/jsplugin.o...
Adding file obj/namdbinplugin.o...
Adding file obj/pdbplugin.o...
Adding file obj/psfplugin.o...
Adding file obj/tcl_psfgen.o...
Adding file obj/charmm_file.o...
Adding file obj/charmm_parse_topo_defs.o...
Adding file obj/extract_alias.o...
Adding file obj/hash.o...
Adding file obj/hasharray.o...
Adding file obj/memarena.o...
Adding file obj/pdb_file.o...
Adding file obj/pdb_file_extract.o...
Adding file obj/psf_file.o...
Adding file obj/psf_file_extract.o...
Adding file obj/topo_defs.o...
Adding file obj/topo_mol.o...
Adding file obj/topo_mol_output.o...
Adding file obj/topo_mol_pluginio.o...
Adding file obj/stringhash.o...
OpenMP support not enabled
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete ------------
charmc: Executing CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -U_FORTIFY_SOURCE -std=c++0x -c moduleinit21376.C -o moduleinit21376.o
charmc: Executing CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -rdynamic -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -L.rootdir/tcl/lib -L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -o namd2 -L.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../include obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o moduleinit21376.o -lmoduleCkLoop -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lckqt -lpthread -lrt -ldl -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleCkLoop -lm
Adding registration for module NeighborLB
Adding registration for module HybridLB
Adding registration for module RefineLB
Adding registration for module GreedyLB
Adding registration for module CkMulticast
Adding registration for module CkLoop
charmc> All libraries are: -L.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../include obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o moduleinit21376.o -lmoduleCkLoop -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lckqt -lpthread -lrt -ldl -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleCkLoop -lm
charmc: Executing rm -f charmrun
charmc: Executing cp -p .rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmrun charmrun
rm -f moduleinit21376.C moduleinit21376.o

Selected arch file arch/CRAY-XE-gnu.arch contains:

NAMD_ARCH = CRAY-XE
CHARMARCH = gemini_gni-crayxe-persistent-smp

# 
# The GNU compilers produce significantly faster NAMD binaries than PGI.
#
# You must run the following to switch CC/cc to the GNU compiler
# environment before building either Charm++ or NAMD:
#
#   module swap PrgEnv-pgi PrgEnv-gnu
#
# Users of psfgen might also need to do 'module remove acml' in order for 
# the the psfgen compilation to succeed.
#

CXX = CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID
CXXOPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer

CC = cc
COPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer


#
# ensure that required modules are loaded
#

$(info $(NAMD_PLATFORM))

loaded_modules := $(subst :, ,$(LOADEDMODULES))

module := $(filter rca/%,$(loaded_modules))
ifeq (,$(module))
  $(error module rca is not loaded)
else
  $(info found module $(module))
endif

module := $(filter PrgEnv-gnu/%,$(loaded_modules))
ifeq (,$(module))
  $(error module PrgEnv-gnu is not loaded)
else
  $(info found module $(module))
endif

Creating directory: CRAY-XE-gnu
Creating link: .. to .rootdir
Writing build options to CRAY-XE-gnu/Make.config
Using Charm++ 6.7.1 build found in main build directory
Using Tcl build found in main build directory
Linking Makefile
Linking Make.depends
Linking src directory
Linking plugins directory
Linking psfgen directory

Generated CRAY-XE-gnu/Make.config contains the following:

CHARMBASE = .rootdir/charm-6.7.1
include .rootdir/arch/CRAY-XE-gnu.arch
CHARMARCH = gni-crayxe-smp
CHARM = $(CHARMBASE)/$(CHARMARCH)
NAMD_PLATFORM = $(NAMD_ARCH)-ugni-smp-CUDA-memopt
include .rootdir/arch/$(NAMD_ARCH).base
include .rootdir/arch/$(NAMD_ARCH).tcl
include .rootdir/arch/$(NAMD_ARCH).fftw3
include .rootdir/arch/$(NAMD_ARCH).cuda
MEMOPT=-DMEM_OPT_VERSION
TCLDIR = .rootdir/tcl
FFTDIR = /opt/cray/fftw/3.3.4.10/interlagos/lib/..

You are ready to run make in directory CRAY-XE-gnu now.

found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
found module fftw/3.3.4.10
found module cudatoolkit/7.5.18-1.0502.10743.2.1
src/flipbinpdb.c: In function 'main':
src/flipdcd.c: In function 'main':
src/flipbinpdb.c:30:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:35:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:40:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipdcd.c:42:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:47:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:53:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(-1);
   ^
src/flipbinpdb.c:64:1: warning: incompatible implicit declaration of built-in function 'exit'
 exit(0);
 ^
if [ ! -d inc ]; then mkdir -p inc; fi
if [ ! -d obj ]; then mkdir -p obj; fi
cc -Isrc -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o flipdcd src/flipdcd.c || \
	echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \
	chmod +x flipdcd
cc -Isrc -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o flipbinpdb src/flipbinpdb.c || \
	echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \
	chmod +x flipbinpdb
cp .rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmrun charmrun
if [ ! -f inc/.exists ]; then touch inc/.exists; fi
if [ ! -f obj/.exists ]; then touch obj/.exists; fi
cpp -E -P -DNAMD_CUDA src/Node.ci > inc/Node.ci
cpp -E -P -DNAMD_CUDA src/PatchMgr.ci > inc/PatchMgr.ci
cpp -E -P -DNAMD_CUDA src/ComputeMoaMgr.ci > inc/ComputeMoaMgr.ci
cpp -E -P -DNAMD_CUDA src/ComputeMgr.ci > inc/ComputeMgr.ci
cpp -E -P -DNAMD_CUDA src/WorkDistrib.ci > inc/WorkDistrib.ci
cpp -E -P -DNAMD_CUDA src/ComputeMsmMgr.ci > inc/ComputeMsmMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/Node.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/PatchMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMoaMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/WorkDistrib.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMsmMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMgr.ci
rm -f inc/PatchMgr.ci
rm -f inc/ComputeMoaMgr.ci
mv PatchMgr.def.h inc
mv ComputeMoaMgr.def.h inc
mv PatchMgr.decl.h inc
mv ComputeMoaMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C
cpp -E -P -DNAMD_CUDA src/ComputeMsmSerialMgr.ci > inc/ComputeMsmSerialMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeMsmSerialMgr.ci
rm -f inc/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputeFmmSerialMgr.ci > inc/ComputeFmmSerialMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeFmmSerialMgr.ci
rm -f inc/ComputeMsmMgr.ci
mv ComputeMsmMgr.def.h inc
mv ComputeMsmMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm.o -c src/msm.c
rm -f inc/ComputeMgr.ci
rm -f inc/WorkDistrib.ci
mv ComputeMgr.def.h inc
mv WorkDistrib.def.h inc
mv ComputeMgr.decl.h inc
mv WorkDistrib.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng.o -c src/msm_longrng.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_setup.o -c src/msm_setup.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng.o -c src/msm_shortrng.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/wkfutils.o -c src/wkfutils.c
rm -f inc/ComputeMsmSerialMgr.ci
mv ComputeMsmSerialMgr.def.h inc
mv ComputeMsmSerialMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/common.o -c src/common.C
rm -f inc/ComputeFmmSerialMgr.ci
mv ComputeFmmSerialMgr.def.h inc
mv ComputeFmmSerialMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdlib.o -c src/dcdlib.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabf1D.o -c src/eabf1D.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabf2D.o -c src/eabf2D.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabffunc.o -c src/eabffunc.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/eabfTcl.o -c src/eabfTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/erf.o -c src/erf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fitrms.o -c src/fitrms.C
cpp -E -P -DNAMD_CUDA src/main.ci > inc/main.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/main.ci
src/common.C: In function 'void NAMD_err(const char*)':
src/common.C:103:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                     ^
src/common.C: In function 'int NAMD_file_exists(const char*)':
src/common.C:141:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                      ^
src/common.C: In function 'void NAMD_backup_file(const char*, const char*)':
src/common.C:170:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
                                        ^
Charmxi> 5: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented.
cpp -E -P -DNAMD_CUDA src/ReductionMgr.ci > inc/ReductionMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ReductionMgr.ci
cpp -E -P -DNAMD_CUDA src/ProxyMgr.ci > inc/ProxyMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ProxyMgr.ci
cpp -E -P -DNAMD_CUDA src/LdbCoordinator.ci > inc/LdbCoordinator.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/LdbCoordinator.ci
rm -f inc/main.ci
mv main.def.h inc
mv main.decl.h inc
cpp -E -P -DNAMD_CUDA src/NamdCentLB.ci > inc/NamdCentLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdCentLB.ci
cpp -E -P -DNAMD_CUDA src/NamdNborLB.ci > inc/NamdNborLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdNborLB.ci
cpp -E -P -DNAMD_CUDA src/NamdHybridLB.ci > inc/NamdHybridLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdHybridLB.ci
cpp -E -P -DNAMD_CUDA src/NamdDummyLB.ci > inc/NamdDummyLB.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/NamdDummyLB.ci
rm -f inc/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputePmeMgr.ci > inc/ComputePmeMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputePmeMgr.ci
rm -f inc/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputePmeCUDAMgr.ci > inc/ComputePmeCUDAMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputePmeCUDAMgr.ci
rm -f inc/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
cpp -E -P -DNAMD_CUDA src/CudaPmeSolver.ci > inc/CudaPmeSolver.ci
rm -f inc/ProxyMgr.ci
mv ProxyMgr.def.h inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CudaPmeSolver.ci
mv ProxyMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/PmeSolver.ci > inc/PmeSolver.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/PmeSolver.ci
cpp -E -P -DNAMD_CUDA src/ComputeCUDAMgr.ci > inc/ComputeCUDAMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeCUDAMgr.ci
rm -f inc/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
cp src/OptPme.ci inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/OptPme.ci
rm -f inc/NamdHybridLB.ci
mv NamdHybridLB.def.h inc
mv NamdHybridLB.decl.h inc
cp src/fftlib.ci inc
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/fftlib.ci
rm -f inc/NamdDummyLB.ci
mv NamdDummyLB.def.h inc
mv NamdDummyLB.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputeExtMgr.ci > inc/ComputeExtMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeExtMgr.ci
rm -f inc/ComputePmeCUDAMgr.ci
mv ComputePmeCUDAMgr.def.h inc
mv ComputePmeCUDAMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputeQMMgr.ci > inc/ComputeQMMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeQMMgr.ci
rm -f inc/ComputeCUDAMgr.ci
mv ComputeCUDAMgr.def.h inc
mv ComputeCUDAMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/ComputeGBISserMgr.ci > inc/ComputeGBISserMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeGBISserMgr.ci
rm -f inc/OptPme.ci
mv OptPmeMgr.def.h inc
mv OptPmeMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/CollectionMgr.ci > inc/CollectionMgr.ci
rm -f inc/PmeSolver.ci
mv PmeSolver.def.h inc
mv PmeSolver.decl.h inc
cpp -E -P -DNAMD_CUDA src/CollectionMaster.ci > inc/CollectionMaster.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CollectionMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/CollectionMaster.ci
rm -f inc/CudaPmeSolver.ci
mv CudaPmeSolver.def.h inc
mv CudaPmeSolver.decl.h inc
cpp -E -P -DNAMD_CUDA src/BroadcastMgr.ci > inc/BroadcastMgr.ci
rm -f inc/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/Sync.ci > inc/Sync.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/BroadcastMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/Sync.ci
rm -f inc/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
cpp -E -P -DNAMD_CUDA src/ParallelIOMgr.ci > inc/ParallelIOMgr.ci
rm -f inc/fftlib.ci
mv PmeFFTLib.def.h inc
mv PmeFFTLib.decl.h inc
cpp -E -P -DNAMD_CUDA src/DataExchanger.ci > inc/DataExchanger.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ParallelIOMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/DataExchanger.ci
rm -f inc/ComputeQMMgr.ci
mv ComputeQMMgr.def.h inc
mv ComputeQMMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/memusage.o -c src/memusage.C
rm -f inc/ComputeGBISserMgr.ci
mv ComputeGBISserMgr.def.h inc
mv ComputeGBISserMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/strlib.o -c src/strlib.C
rm -f inc/CollectionMgr.ci
mv CollectionMgr.def.h inc
mv CollectionMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgSeven.o -c src/AlgSeven.C
rm -f inc/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgRecBisection.o -c src/AlgRecBisection.C
rm -f inc/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgNbor.o -c src/AlgNbor.C
rm -f inc/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AtomMap.o -c src/AtomMap.C
rm -f inc/ParallelIOMgr.ci
mv ParallelIOMgr.def.h inc
mv ParallelIOMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastClient.o -c src/BroadcastClient.C
rm -f inc/DataExchanger.ci
mv DataExchanger.def.h inc
mv DataExchanger.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMaster.o -c src/CollectionMaster.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMgr.o -c src/CollectionMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Communicate.o -c src/Communicate.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Compute.o -c src/Compute.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAngles.o -c src/ComputeAngles.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAniso.o -c src/ComputeAniso.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeBonds.o -c src/ComputeBonds.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForce.o -c src/ComputeConsForce.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCUDAMgr.o -c src/ComputeCUDAMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPME.o -c src/ComputeDPME.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEField.o -c src/ComputeEField.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEwald.o -c src/ComputeEwald.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeExt.o -c src/ComputeExt.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeQM.o -c src/ComputeQM.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBISser.o -c src/ComputeGBISser.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBIS.o -c src/ComputeGBIS.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeLCPO.o -c src/ComputeLCPO.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeImpropers.o -c src/ComputeImpropers.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGridForce.o -c src/ComputeGridForce.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMap.o -c src/ComputeMap.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMgr.o -c src/ComputeMgr.C
src/ComputeMap.C: In member function 'void ComputeMap::printComputeMap()':
src/ComputeMap.C:230:7: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
 fname = "computeMap.opt";
       ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from src/ComputePmeCUDA.h:12,
                 from src/ComputeMgr.C:57:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePmeCUDA.h:12:0,
                 from src/ComputeMgr.C:57:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
In file included from src/DataExchanger.h:12:0,
                 from src/colvarproxy_namd.h:24,
                 from src/GlobalMasterColvars.h:7,
                 from src/ComputeMgr.C:98:
inc/DataExchanger.decl.h:863:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/DataExchanger.h:61:5: note: in expansion of macro 'DataExchanger_SDAG_CODE'
     DataExchanger_SDAG_CODE;
     ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C
In file included from src/ComputeNonbondedCUDA.C:13:0:
src/ComputeNonbondedCUDAKernel.h:8:17: warning: extra tokens at end of #undef directive
 #undef __align__(X)
                 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatch.o -c src/ComputePatch.C
In file included from src/ComputeNonbondedMICKernelBase2.h:218:0,
                 from src/ComputeNonbondedMICKernelBase.h:1555,
                 from src/ComputeNonbondedMICKernel.C:2647:
src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space
                    pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \ 
 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatchPair.o -c src/ComputePatchPair.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePme.o -c src/ComputePme.C
In file included from src/ComputePme.C:76:0:
src/ComputePmeCUDAKernel.h:4:17: warning: extra tokens at end of #undef directive
 #undef __align__(X)
                 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePmeCUDA.o -c src/ComputePmeCUDA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePmeCUDAMgr.o -c src/ComputePmeCUDAMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPme.o -c src/OptPme.C
In file included from src/ComputePme.C:36:0:
inc/ComputePmeMgr.decl.h:1731:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePme.C:4600:5: note: in expansion of macro 'PmeYPencil_SDAG_CODE'
     PmeYPencil_SDAG_CODE
     ^
inc/ComputePmeMgr.decl.h:2219:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePme.C:4663:5: note: in expansion of macro 'PmeXPencil_SDAG_CODE'
     PmeXPencil_SDAG_CODE
     ^
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from src/ComputePmeCUDA.h:12,
                 from src/ComputePmeCUDA.C:10:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePmeCUDA.h:12:0,
                 from src/ComputePmeCUDA.C:10:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeRestraints.o -c src/ComputeRestraints.C
In file included from inc/OptPmeMgr.decl.h:7:0,
                 from src/OptPme.h:21,
                 from src/OptPme.C:28:
inc/PmeFFTLib.decl.h:1442:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/fftlib.h:144:5: note: in expansion of macro 'OptPmeYPencil_SDAG_CODE'
     OptPmeYPencil_SDAG_CODE
     ^
inc/PmeFFTLib.decl.h:2048:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/fftlib.h:174:5: note: in expansion of macro 'OptPmeXPencil_SDAG_CODE'
     OptPmeXPencil_SDAG_CODE
     ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/ComputePmeCUDAMgr.C:14:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePmeCUDAMgr.h:9:0,
                 from src/ComputePmeCUDAMgr.C:14:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeStir.o -c src/ComputeStir.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeTclBC.o -c src/ComputeTclBC.C
In file included from inc/ComputePmeCUDAMgr.decl.h:7:0,
                 from src/ComputePmeCUDAMgr.h:9,
                 from src/ComputePmeCUDAMgr.C:14:
inc/CudaPmeSolver.decl.h:1258:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:86:2: note: in expansion of macro 'CudaPmePencilXY_SDAG_CODE'
  CudaPmePencilXY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:1911:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:114:2: note: in expansion of macro 'CudaPmePencilX_SDAG_CODE'
  CudaPmePencilX_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:2715:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:142:2: note: in expansion of macro 'CudaPmePencilY_SDAG_CODE'
  CudaPmePencilY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:3517:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:177:2: note: in expansion of macro 'CudaPmePencilZ_SDAG_CODE'
  CudaPmePencilZ_SDAG_CODE
  ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeThole.o -c src/ComputeThole.C
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)':
src/ComputeTclBC.C:145:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         TCL_VOLATILE);
                     ^
src/ComputeTclBC.C:156:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         TCL_VOLATILE);
                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:166:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:184:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:196:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:236:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:241:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:272:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:320:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:332:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:337:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:349:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:354:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:378:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
                                                           ^
src/ComputeTclBC.C:384:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
                                                          ^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:398:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ComputeTclBC.C:404:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE);
                                                            ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ConfigList.o -c src/ConfigList.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/Controller.o -c src/Controller.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaComputeNonbonded.o -c src/CudaComputeNonbonded.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaPmeSolver.o -c src/CudaPmeSolver.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaPmeSolverUtil.o -c src/CudaPmeSolverUtil.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CudaUtils.o -c src/CudaUtils.C
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaPmeSolver.C:5:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePmeCUDAMgr.h:9:0,
                 from src/CudaPmeSolver.C:5:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
In file included from inc/ComputePmeCUDAMgr.decl.h:7:0,
                 from src/ComputePmeCUDAMgr.h:9,
                 from src/CudaPmeSolver.C:5:
inc/CudaPmeSolver.decl.h:1258:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:86:2: note: in expansion of macro 'CudaPmePencilXY_SDAG_CODE'
  CudaPmePencilXY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:1911:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:114:2: note: in expansion of macro 'CudaPmePencilX_SDAG_CODE'
  CudaPmePencilX_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:2715:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:142:2: note: in expansion of macro 'CudaPmePencilY_SDAG_CODE'
  CudaPmePencilY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:3517:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:177:2: note: in expansion of macro 'CudaPmePencilZ_SDAG_CODE'
  CudaPmePencilZ_SDAG_CODE
  ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaPmeSolverUtil.C:7:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/PmeSolver.h:7:0,
                 from src/ComputePmeCUDAMgr.h:7,
                 from src/CudaComputeNonbonded.C:18:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from src/ComputePmeCUDAMgr.h:9:0,
                 from src/CudaPmeSolverUtil.C:7:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
In file included from inc/ComputePmeCUDAMgr.decl.h:7:0,
                 from src/ComputePmeCUDAMgr.h:9,
                 from src/CudaPmeSolverUtil.C:7:
inc/CudaPmeSolver.decl.h:1258:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:86:2: note: in expansion of macro 'CudaPmePencilXY_SDAG_CODE'
  CudaPmePencilXY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:1911:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:114:2: note: in expansion of macro 'CudaPmePencilX_SDAG_CODE'
  CudaPmePencilX_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:2715:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:142:2: note: in expansion of macro 'CudaPmePencilY_SDAG_CODE'
  CudaPmePencilY_SDAG_CODE
  ^
inc/CudaPmeSolver.decl.h:3517:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/CudaPmeSolver.h:177:2: note: in expansion of macro 'CudaPmePencilZ_SDAG_CODE'
  CudaPmePencilZ_SDAG_CODE
  ^
In file included from src/ComputePmeCUDAMgr.h:9:0,
                 from src/CudaComputeNonbonded.C:18:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ccsinterface.o -c src/ccsinterface.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataStream.o -c src/DataStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DeviceCUDA.o -c src/DeviceCUDA.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DumpBench.o -c src/DumpBench.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C
src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:205:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (Mass < 0) {EarlyExit("Negative Mass", AtomID);};
                                                     ^
src/FreeEnergyRestrain.C:213:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
                                                     ^
src/FreeEnergyRestrain.C:218:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);}
                                                         ^
src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:247:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);}
                                                              ^
src/FreeEnergyRestrain.C:251:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
                                                       ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fstream_namd.o -c src/fstream_namd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMaster.o -c src/GlobalMaster.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:44:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:58:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"atom not found",TCL_VOLATILE);
                                                       ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:74:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:100:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:150:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:163:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:176:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:190:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_enabletotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:261:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_disabletotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:274:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:289:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:296:91: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"must call enabletotalforces before loadtotalforces",TCL_VOLATILE);
                                                                                           ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:361:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:419:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:464:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/GlobalMasterTcl.C:483:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
                                                           ^
src/GlobalMasterTcl.C:491:72: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE);
                                                                        ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvar.o -c src/colvar.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvaratoms.o -c src/colvaratoms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias.o -c src/colvarbias.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_abf.o -c src/colvarbias_abf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_alb.o -c src/colvarbias_alb.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_histogram.o -c src/colvarbias_histogram.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_meta.o -c src/colvarbias_meta.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp.o -c src/colvarcomp.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvardeps.o -c src/colvardeps.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvargrid.o -c src/colvargrid.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarmodule.o -c src/colvarmodule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarparse.o -c src/colvarparse.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarscript.o -c src/colvarscript.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvartypes.o -c src/colvartypes.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/colvarvalue.o -c src/colvarvalue.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GridForceGrid.o -c src/GridForceGrid.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GromacsTopFile.o -c src/GromacsTopFile.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/heap.o -c src/heap.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/HomePatch.o -c src/HomePatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/IMDOutput.o -c src/IMDOutput.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/InfoStream.o -c src/InfoStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LdbCoordinator.o -c src/LdbCoordinator.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LJTable.o -c src/LJTable.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Measure.o -c src/Measure.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MGridforceParams.o -c src/MGridforceParams.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MStream.o -c src/MStream.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C
src/Measure.C: In function 'int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/Measure.C:114:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE);
                                                                 ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule.o -c src/Molecule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule2.o -c src/Molecule2.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GoMolecule.o -c src/GoMolecule.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MoleculeQM.o -c src/MoleculeQM.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdCentLB.o -c src/NamdCentLB.C
src/Molecule.C: In member function 'void Molecule::read_mol_signatures(char*, Parameters*, ConfigList*)':
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         char *tmpstr[]={"RIGID_NONE", "RIGID_ALL", "RIGID_WATER"};
                                                                 ^
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
src/Molecule.C:4599:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdNborLB.o -c src/NamdNborLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdHybridLB.o -c src/NamdHybridLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdDummyLB.o -c src/NamdDummyLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdState.o -c src/NamdState.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdOneTools.o -c src/NamdOneTools.C
cpp -E -P -DNAMD_CUDA src/ComputeGridForceMgr.ci > inc/ComputeGridForceMgr.ci
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc inc/ComputeGridForceMgr.ci
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Output.o -c src/Output.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Parameters.o -c src/Parameters.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParseOptions.o -c src/ParseOptions.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Patch.o -c src/Patch.C
rm -f inc/ComputeGridForceMgr.ci
mv ComputeGridForceMgr.def.h inc
mv ComputeGridForceMgr.decl.h inc
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMgr.o -c src/PatchMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMap.o -c src/PatchMap.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDB.o -c src/PDB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDBData.o -c src/PDBData.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeKSpace.o -c src/PmeKSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeRealSpace.o -c src/PmeRealSpace.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeSolver.o -c src/PmeSolver.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyMgr.o -c src/ProxyMgr.C
In file included from src/PmeSolver.h:7:0,
                 from src/PmeSolver.C:4:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyPatch.o -c src/ProxyPatch.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Rebalancer.o -c src/Rebalancer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RecBisection.o -c src/RecBisection.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/ReductionMgr.o -c src/ReductionMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineOnly.o -c src/RefineOnly.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineTorusLB.o -c src/RefineTorusLB.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ScriptTcl.o -c src/ScriptTcl.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/Sequencer.o -c src/Sequencer.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Set.o -c src/Set.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Settle.o -c src/Settle.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer  -o obj/SimParameters.o -c src/SimParameters.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SortAtoms.o -c src/SortAtoms.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sync.o -c src/Sync.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TclCommands.o -c src/TclCommands.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TorusLB.o -c src/TorusLB.C
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_python(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:356:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   Tcl_SetResult(interp,"python not enabled",TCL_VOLATILE);
                                                         ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_startup(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:365:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:405:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:414:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:423:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:432:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:441:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaEval(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:461:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: dest script",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C:450:63: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"negative replica index",TCL_VOLATILE); \
                                                               ^
src/ScriptTcl.C:465:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(dest);
   ^
src/ScriptTcl.C:454:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"non-existent replica index",TCL_VOLATILE); \
                                                                   ^
src/ScriptTcl.C:465:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(dest);
   ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaYield(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:485:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: ?seconds?",TCL_VOLATILE);
                                                        ^
src/ScriptTcl.C:491:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"args: ?seconds?",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:507:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE);
                                                                 ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:536:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE);
                                                        ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:549:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: source",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:570:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:583:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:587:75: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE);
                                                                           ^
src/ScriptTcl.C:592:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE);
                                                                      ^
src/ScriptTcl.C:598:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE);
                                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:641:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:645:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:650:61: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE);
                                                             ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:678:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
                                                                                               ^
src/ScriptTcl.C:682:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE);
                                                                      ^
src/ScriptTcl.C:688:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE);
                                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:725:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:801:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:816:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:826:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:853:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:861:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
                                                                   ^
src/ScriptTcl.C:866:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE);
                                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:876:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:884:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C:888:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE);
                                                                 ^
src/ScriptTcl.C:892:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
                                                                   ^
src/ScriptTcl.C:896:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE);
                                                                ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:906:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:914:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
                                                          ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:924:79: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args for NAMD config parameter",TCL_VOLATILE);
                                                                               ^
src/ScriptTcl.C:930:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter name too long for NAMD config parameter",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:942:86: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"parameter unknown for NAMD config parameter",TCL_VOLATILE);
                                                                                      ^
src/ScriptTcl.C:951:91: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"parameter value too long for NAMD config parameter",TCL_VOLATILE);
                                                                                           ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:970:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:987:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1004:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1008:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
                                                      ^
src/ScriptTcl.C:1017:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         "first arg not norepeat",TCL_VOLATILE);
                                              ^
src/ScriptTcl.C:1027:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
                                                                             ^
src/ScriptTcl.C:1032:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:1036:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                            ^
src/ScriptTcl.C:1040:107: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"run called with minimization enabled; use minimize command instead",TCL_VOLATILE);
                                                                                                           ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1066:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1074:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
                                                                             ^
src/ScriptTcl.C:1079:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                          ^
src/ScriptTcl.C:1083:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
                                                                                            ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1108:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
                                                       ^
src/ScriptTcl.C:1120:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE);
                                                              ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1139:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1147:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"syntax is 'move <id> to|by {<x> <y> <z>}'",TCL_VOLATILE);
                                                                                  ^
src/ScriptTcl.C:1157:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE);
                                                                    ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1185:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1189:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
                                                      ^
src/ScriptTcl.C:1194:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"file name too long",TCL_VOLATILE);
                                                           ^
src/ScriptTcl.C:1207:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
         "first arg not withforces or onlyforces",TCL_VOLATILE);
                                                              ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1246:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1273:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1278:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C:1290:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE);
                                                                                  ^
src/ScriptTcl.C:1302:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE);
                                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1320:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C:1371:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1388:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
                                                                  ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1413:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1427:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpointReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1452:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: <key> ?<replica> or global?",TCL_VOLATILE);
                                                                          ^
src/ScriptTcl.C:1461:76: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"args: <key> ?<replica> or global?",TCL_VOLATILE);
                                                                            ^
src/ScriptTcl.C:1467:115: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"replicaUniformPatchGrids is required for checkpointing on other replicas",TCL_VOLATILE);
                                                                                                                   ^
src/ScriptTcl.C:450:63: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"negative replica index",TCL_VOLATILE); \
                                                               ^
src/ScriptTcl.C:1472:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(replica);
   ^
src/ScriptTcl.C:454:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"non-existent replica index",TCL_VOLATILE); \
                                                                   ^
src/ScriptTcl.C:1472:3: note: in expansion of macro 'CHECK_REPLICA'
   CHECK_REPLICA(replica);
   ^
src/ScriptTcl.C:1485:100: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"checkpointStore/Load/Swap/Free called via unrecognized name",TCL_VOLATILE);
                                                                                                    ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaDcdFile(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1495:94: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   Tcl_SetResult(interp,"replicaDcdFile not supported in memory-optimized builds",TCL_VOLATILE);
                                                                                              ^
src/ScriptTcl.C:1503:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"args: <index>|off ?<filename>?",TCL_VOLATILE);
                                                                       ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1520:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1554:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
                                                     ^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reloadStructure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1907:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       Tcl_SetResult(interp,"unknown structure",TCL_VOLATILE);
                                                            ^
src/SimParameters.C: In member function 'void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)':
src/SimParameters.C:5925:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case CUBIC:    approx_str = "C1 CUBIC";   break;
                                  ^
src/SimParameters.C:5926:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case QUINTIC:  approx_str = "C1 QUINTIC"; break;
                                  ^
src/SimParameters.C:5927:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case QUINTIC2: approx_str = "C2 QUINTIC"; break;
                                  ^
src/SimParameters.C:5928:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case SEPTIC:   approx_str = "C1 SEPTIC";  break;
                                  ^
src/SimParameters.C:5929:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case SEPTIC3:  approx_str = "C3 SEPTIC";  break;
                                  ^
src/SimParameters.C:5930:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case NONIC:    approx_str = "C1 NONIC";   break;
                                  ^
src/SimParameters.C:5931:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case NONIC4:   approx_str = "C4 NONIC";   break;
                                  ^
src/SimParameters.C:5932:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case C1HERMITE:approx_str = "C1 HERMITE"; break;
                                  ^
src/SimParameters.C:5933:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        default:       approx_str = "UNKNOWN";    break;
                                  ^
src/SimParameters.C:5936:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR2:  split_str = "C2 TAYLOR";   break;
                                 ^
src/SimParameters.C:5937:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR3:  split_str = "C3 TAYLOR";   break;
                                 ^
src/SimParameters.C:5938:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR4:  split_str = "C4 TAYLOR";   break;
                                 ^
src/SimParameters.C:5939:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR5:  split_str = "C5 TAYLOR";   break;
                                 ^
src/SimParameters.C:5940:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR6:  split_str = "C6 TAYLOR";   break;
                                 ^
src/SimParameters.C:5941:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR7:  split_str = "C7 TAYLOR";   break;
                                 ^
src/SimParameters.C:5942:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        case TAYLOR8:  split_str = "C8 TAYLOR";   break;
                                 ^
src/SimParameters.C:5943:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        default:       split_str = "UNKNOWN";     break;
                                 ^
In file included from src/SimParameters.h:21:0,
                 from src/GridForceGrid.h:14,
                 from src/Molecule.h:31,
                 from src/ComputeNonbondedUtil.h:16,
                 from src/SimParameters.C:21:
src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)':
src/MGridforceParams.h:18:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
 #define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams"
                                     ^
src/SimParameters.C:6178:25: note: in expansion of macro 'MGRIDFORCEPARAMS_DEFAULTKEY'
     char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY;
                         ^
src/SimParameters.C: In member function 'void SimParameters::print_mgrid_params()':
src/SimParameters.C:6621:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     char *qcol_msg = "Use atom charge";
                      ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/WorkDistrib.o -c src/WorkDistrib.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pub3dfft.o -c src/pub3dfft.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/vmdsock.o -c src/vmdsock.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/parm.o -c src/parm.C
src/parm.C: In member function 'int parm::readparm(char*)':
src/parm.C:184:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"TITLE"))
                           ^
src/parm.C:194:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"POINTERS"))
                               ^
src/parm.C:318:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ATOM_NAME"))
                               ^
src/parm.C:332:28: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"CHARGE"))
                            ^
src/parm.C:350:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"MASS"))
                          ^
src/parm.C:368:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ATOM_TYPE_INDEX"))
                                      ^
src/parm.C:389:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"NUMBER_EXCLUDED_ATOMS"))
                                            ^
src/parm.C:410:43: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"NONBONDED_PARM_INDEX"))
                                           ^
src/parm.C:431:35: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"RESIDUE_LABEL"))
                                   ^
src/parm.C:443:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"RESIDUE_POINTER"))
                                      ^
src/parm.C:465:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"BOND_FORCE_CONSTANT"))
                                         ^
src/parm.C:483:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"BOND_EQUIL_VALUE"))
                                      ^
src/parm.C:501:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ANGLE_FORCE_CONSTANT"))
                                          ^
src/parm.C:519:39: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"ANGLE_EQUIL_VALUE"))
                                       ^
src/parm.C:537:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT"))
                                             ^
src/parm.C:555:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_PERIODICITY"))
                                          ^
src/parm.C:573:36: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"DIHEDRAL_PHASE"))
                                    ^
src/parm.C:591:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"SOLTY"))
                           ^
src/parm.C:610:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"LENNARD_JONES_ACOEF"))
                                         ^
src/parm.C:629:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"LENNARD_JONES_BCOEF"))
                                         ^
src/parm.C:650:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"BONDS_INC_HYDROGEN"))
                                         ^
src/parm.C:682:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"BONDS_WITHOUT_HYDROGEN"))
                                             ^
src/parm.C:715:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ANGLES_INC_HYDROGEN"))
                                          ^
src/parm.C:750:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN"))
                                              ^
src/parm.C:786:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"DIHEDRALS_INC_HYDROGEN"))
                                             ^
src/parm.C:823:49: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN"))
                                                 ^
src/parm.C:855:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"EXCLUDED_ATOMS_LIST"))
                                          ^
src/parm.C:876:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBOND_ACOEF"))
                                 ^
src/parm.C:894:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBOND_BCOEF"))
                                 ^
src/parm.C:912:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"HBCUT"))
                           ^
src/parm.C:933:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"AMBER_ATOM_TYPE"))
                                     ^
src/parm.C:945:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   if (!moveto(file,"TREE_CHAIN_CLASSIFICATION"))
                                               ^
src/parm.C:957:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"JOIN_ARRAY"))
                                 ^
src/parm.C:980:29: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  { if (!moveto(file,"IROTAT"))
                             ^
src/parm.C:1009:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { if (!moveto(file,"SOLVENT_POINTERS"))
                                        ^
src/parm.C:1034:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
   { if (!moveto(file,"ATOMS_PER_MOLECULE"))
                                          ^
src/parm.C:1050:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    if (!moveto(file,"BOX_DIMENSIONS"))
                                     ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/imd.o -c src/imd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CompressPsf.o -c src/CompressPsf.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PluginIOMgr.o -c src/PluginIOMgr.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataExchanger.o -c src/DataExchanger.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/ComputeNonbondedCUDAKernel.o -c `echo src/`ComputeNonbondedCUDAKernel.cu
In file included from inc/CudaPmeSolver.decl.h:7:0,
                 from inc/ComputePmeCUDAMgr.decl.h:7,
                 from inc/main.decl.h:109,
                 from src/WorkDistrib.C:30:
inc/PmeSolver.decl.h:2007:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:167:3: note: in expansion of macro 'PmePencilXY_SDAG_CODE'
   PmePencilXY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2519:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:194:3: note: in expansion of macro 'PmePencilX_SDAG_CODE'
   PmePencilX_SDAG_CODE
   ^
inc/PmeSolver.decl.h:2995:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:221:3: note: in expansion of macro 'PmePencilY_SDAG_CODE'
   PmePencilY_SDAG_CODE
   ^
inc/PmeSolver.decl.h:3607:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/PmeSolver.h:249:3: note: in expansion of macro 'PmePencilZ_SDAG_CODE'
   PmePencilZ_SDAG_CODE
   ^
In file included from inc/main.decl.h:109:0,
                 from src/WorkDistrib.C:30:
inc/ComputePmeCUDAMgr.decl.h:2086:35: warning: 'auto_ptr' is deprecated (declared at /opt/gcc/4.9.3/snos/include/g++/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
   std::auto_ptr<SDAG::Dependency> __dep;                                       \
                                   ^
src/ComputePmeCUDAMgr.h:432:3: note: in expansion of macro 'ComputePmeCUDAMgr_SDAG_CODE'
   ComputePmeCUDAMgr_SDAG_CODE;
   ^
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/ComputePmeCUDAKernel.o -c `echo src/`ComputePmeCUDAKernel.cu
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/CudaComputeGBISKernel.o -c `echo src/`CudaComputeGBISKernel.cu
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/CudaComputeNonbondedKernel.o -c `echo src/`CudaComputeNonbondedKernel.cu
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/CudaPmeSolverUtilKernel.o -c `echo src/`CudaPmeSolverUtilKernel.cu
ptxas info    : 0 bytes gmem
ptxas info    : Compiling entry function '_Z28cuda_pme_charges_batched_devILi8EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_' for 'sm_35'
ptxas info    : Function properties for _Z28cuda_pme_charges_batched_devILi8EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 37 registers, 1920 bytes smem, 392 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20cuda_pme_charges_devILi6EEvPKfPKPfPiS5_S2_iiii' for 'sm_35'
ptxas info    : Function properties for _Z20cuda_pme_charges_devILi6EEvPKfPKPfPiS5_S2_iiii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 37 registers, 1616 bytes smem, 376 bytes cmem[0], 12 bytes cmem[2]
ptxas info    : Compiling entry function '_Z19cuda_pme_forces_devILi6EEvPKfPKPfS4_iii' for 'sm_35'
ptxas info    : Function properties for _Z19cuda_pme_forces_devILi6EEvPKfPKPfS4_iii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 5672 bytes smem, 356 bytes cmem[0], 12 bytes cmem[2]
ptxas info    : Compiling entry function '_Z28cuda_pme_charges_batched_devILi4EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_' for 'sm_35'
ptxas info    : Function properties for _Z28cuda_pme_charges_batched_devILi4EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 40 registers, 1344 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z19cuda_pme_forces_devILi4EEvPKfPKPfS4_iii' for 'sm_35'
ptxas info    : Function properties for _Z19cuda_pme_forces_devILi4EEvPKfPKPfS4_iii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 5208 bytes smem, 356 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20cuda_pme_charges_devILi8EEvPKfPKPfPiS5_S2_iiii' for 'sm_35'
ptxas info    : Function properties for _Z20cuda_pme_charges_devILi8EEvPKfPKPfPiS5_S2_iiii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 35 registers, 1920 bytes smem, 376 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z28cuda_pme_charges_batched_devILi6EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_' for 'sm_35'
ptxas info    : Function properties for _Z28cuda_pme_charges_batched_devILi6EEvPKfPKPfPiS5_PS2_S5_S5_S5_S5_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 38 registers, 1616 bytes smem, 392 bytes cmem[0], 12 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20cuda_pme_charges_devILi4EEvPKfPKPfPiS5_S2_iiii' for 'sm_35'
ptxas info    : Function properties for _Z20cuda_pme_charges_devILi4EEvPKfPKPfPiS5_S2_iiii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 38 registers, 1344 bytes smem, 376 bytes cmem[0]
ptxas info    : Compiling entry function '_Z19cuda_pme_forces_devILi8EEvPKfPKPfS4_iii' for 'sm_35'
ptxas info    : Function properties for _Z19cuda_pme_forces_devILi8EEvPKfPKPfS4_iii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 6168 bytes smem, 356 bytes cmem[0]
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 40 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 40 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 40 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 40 computed using thread count
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/CudaTileListKernel.o -c `echo src/`CudaTileListKernel.cu
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 80 computed using thread count
ptxas info    : 1 bytes gmem
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb1ELb0ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb1ELb0ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 58 registers, 464 bytes cmem[0], 44 bytes cmem[2]
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb0ELb0ELi3EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb0ELb0ELi3EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 432 bytes cmem[0], 64 bytes cmem[2]
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb0ELb0ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb0ELb0ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 49 registers, 464 bytes cmem[0], 44 bytes cmem[2]
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb1ELb1ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb1ELb1ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 66 registers, 464 bytes cmem[0], 44 bytes cmem[2]
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb0ELb0ELi1EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb0ELb0ELi1EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 42 registers, 432 bytes cmem[0], 60 bytes cmem[2]
ptxas info    : Compiling entry function '_ZN3cub11EmptyKernelIvEEvv' for 'sm_35'
ptxas info    : Function properties for _ZN3cub11EmptyKernelIvEEvv
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 2 registers, 320 bytes cmem[0]
ptxas info    : Compiling entry function '_Z11GBIS_KernelILb0ELb1ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z11GBIS_KernelILb0ELb1ELi2EEviPK8TileListPKiPK15PatchPairRecordfffPK6float4f9GBISParamIXT1_EEPKfSE_SE_PfPS8_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 57 registers, 464 bytes cmem[0], 44 bytes cmem[2]
ptxas info    : 0 bytes gmem, 8192 bytes cmem[3]
ptxas info    : Compiling entry function '_Z13dev_nonbondedPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z13dev_nonbondedPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    8 bytes stack frame, 8 bytes spill stores, 20 bytes spill loads
ptxas info    : Used 40 registers, 288 bytes smem, 540 bytes cmem[0], 12 bytes cmem[2], 2 textures
ptxas info    : Compiling entry function '_Z22dev_nonbonded_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z22dev_nonbonded_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 47 registers, 1648 bytes smem, 540 bytes cmem[0], 12 bytes cmem[2], 2 textures
ptxas info    : Compiling entry function '_Z18dev_nonbonded_slowPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z18dev_nonbonded_slowPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    56 bytes stack frame, 220 bytes spill stores, 204 bytes spill loads
ptxas info    : Used 40 registers, 480 bytes smem, 540 bytes cmem[0], 12 bytes cmem[2], 2 textures
ptxas info    : Compiling entry function '_Z27dev_nonbonded_slow_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z27dev_nonbonded_slow_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    32 bytes stack frame, 44 bytes spill stores, 116 bytes spill loads
ptxas info    : Used 48 registers, 3232 bytes smem, 540 bytes cmem[0], 20 bytes cmem[2], 2 textures
ptxas info    : Compiling entry function '_Z14GBIS_P2_KernelPK10patch_pairPK4atomPKfPfS7_fffffff6float3S8_S8_iiP6float4SA_S7_S7_Pj' for 'sm_35'
ptxas info    : Function properties for _Z14GBIS_P2_KernelPK10patch_pairPK4atomPKfPfS7_fffffff6float3S8_S8_iiP6float4SA_S7_S7_Pj
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 2112 bytes smem, 472 bytes cmem[0], 40 bytes cmem[2]
ptxas info    : Compiling entry function '_Z25dev_nonbonded_slow_energyPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z25dev_nonbonded_slow_energyPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    56 bytes stack frame, 244 bytes spill stores, 236 bytes spill loads
ptxas info    : Used 40 registers, 480 bytes smem, 544 bytes cmem[0], 12 bytes cmem[2], 3 textures
ptxas info    : Compiling entry function '_Z34dev_nonbonded_slow_energy_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z34dev_nonbonded_slow_energy_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    32 bytes stack frame, 60 bytes spill stores, 144 bytes spill loads
ptxas info    : Used 48 registers, 3232 bytes smem, 544 bytes cmem[0], 20 bytes cmem[2], 3 textures
ptxas info    : Compiling entry function '_Z14GBIS_P1_KernelPK10patch_pairPK4atomPKfS6_PfS7_ff6float3S8_S8_Pj' for 'sm_35'
ptxas info    : Function properties for _Z14GBIS_P1_KernelPK10patch_pairPK4atomPKfS6_PfS7_ff6float3S8_S8_Pj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 42 registers, 576 bytes smem, 424 bytes cmem[0], 60 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20dev_nonbonded_energyPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z20dev_nonbonded_energyPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    8 bytes stack frame, 8 bytes spill stores, 24 bytes spill loads
ptxas info    : Used 40 registers, 288 bytes smem, 544 bytes cmem[0], 12 bytes cmem[2], 3 textures
ptxas info    : Compiling entry function '_Z29dev_nonbonded_energy_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi' for 'sm_35'
ptxas info    : Function properties for _Z29dev_nonbonded_energy_pairlistPK10patch_pairPK4atomPK10atom_paramPKiPjP6float4SC_SC_SC_PfSD_SD_SD_SA_PiPKjiiiSE_P8exclmaski6float3SJ_SJ_ffi
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 1648 bytes smem, 544 bytes cmem[0], 12 bytes cmem[2], 3 textures
ptxas info    : Compiling entry function '_Z14GBIS_P3_KernelPK10patch_pairPK4atomPKfS6_S6_fff6float3S7_S7_P6float4S9_Pj' for 'sm_35'
ptxas info    : Function properties for _Z14GBIS_P3_KernelPK10patch_pairPK4atomPKfS6_S6_fff6float3S7_S7_P6float4S9_Pj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 1600 bytes smem, 432 bytes cmem[0], 64 bytes cmem[2]
/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/bin/nvcc -O3 -ftz=true --maxrregcount 48 -arch sm_35 -Xcompiler "-m64" -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -Xptxas -v -o obj/DeviceCUDAkernel.o -c `echo src/`DeviceCUDAkernel.cu
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c
ptxas info    : 0 bytes gmem
ptxas info    : Compiling entry function '_Z21read_CUDA_ARCH_kernelPi' for 'sm_35'
ptxas info    : Function properties for _Z21read_CUDA_ARCH_kernelPi
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 4 registers, 328 bytes cmem[0]
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/charmm_file.o -c sb/src/charmm_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/extract_alias.o -c sb/src/extract_alias.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/hash.o -c sb/src/hash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/hasharray.o -c sb/src/hasharray.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/memarena.o -c sb/src/memarena.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/pdb_file.o -c sb/src/pdb_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/psf_file.o -c sb/src/psf_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_defs.o -c sb/src/topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol.o -c sb/src/topo_mol.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/stringhash.o -c sb/src/stringhash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/tcl_main.o -c sb/src/tcl_main.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o obj/sortreplicas.o -c src/sortreplicas.c
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMoa.o -c src/ComputeMoa.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsm.o -c src/ComputeMsm.C
src/sortreplicas.c: In function 'main':
src/sortreplicas.c:52:5: warning: incompatible implicit declaration of built-in function 'exit'
     exit(-1);
     ^
src/sortreplicas.c:85:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:92:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:102:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:110:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:131:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:138:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(-1);
       ^
src/sortreplicas.c:146:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:172:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:178:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:188:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:193:9: warning: incompatible implicit declaration of built-in function 'exit'
         exit(-1);
         ^
src/sortreplicas.c:219:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:225:11: warning: incompatible implicit declaration of built-in function 'exit'
           exit(-1);
           ^
src/sortreplicas.c:259:3: warning: incompatible implicit declaration of built-in function 'free'
   free(frame.coords);
   ^
src/sortreplicas.c:281:3: warning: incompatible implicit declaration of built-in function 'exit'
   exit(0);
   ^
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C
ptxas info    : 1 bytes gmem, 8192 bytes cmem[3]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 41 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 47 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    40 bytes stack frame, 24 bytes spill stores, 24 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    56 bytes stack frame, 40 bytes spill stores, 56 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    80 bytes stack frame, 60 bytes spill stores, 76 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z24reduceVirialEnergyKernelbbbiPK20TileListVirialEnergyP12VirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z24reduceVirialEnergyKernelbbbiPK20TileListVirialEnergyP12VirialEnergy
    120 bytes stack frame, 16 bytes spill stores, 32 bytes spill loads
ptxas info    : Used 48 registers, 624 bytes smem, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    64 bytes stack frame, 44 bytes spill stores, 44 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 42 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    40 bytes stack frame, 32 bytes spill stores, 32 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    56 bytes stack frame, 48 bytes spill stores, 64 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb0ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 12 bytes spill stores, 12 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb0ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    32 bytes stack frame, 28 bytes spill stores, 44 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb0ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 40 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb0ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 41 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub11EmptyKernelIvEEvv' for 'sm_35'
ptxas info    : Function properties for _ZN3cub11EmptyKernelIvEEvv
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 2 registers, 320 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    48 bytes stack frame, 40 bytes spill stores, 40 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb0ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb0ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    64 bytes stack frame, 56 bytes spill stores, 72 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    8 bytes stack frame, 8 bytes spill stores, 8 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    88 bytes stack frame, 96 bytes spill stores, 120 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z27reduceNonbondedVirialKernelbiPK6float4S1_S1_P12VirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z27reduceNonbondedVirialKernelbiPK6float4S1_S1_P12VirialEnergy
    72 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 45 registers, 164 bytes smem, 360 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb0ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb0ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    72 bytes stack frame, 80 bytes spill stores, 88 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 47 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    16 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    72 bytes stack frame, 52 bytes spill stores, 52 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb0ELb1ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb0ELb1ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    88 bytes stack frame, 68 bytes spill stores, 84 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb1ELb0ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    24 bytes stack frame, 4 bytes spill stores, 4 bytes spill loads
ptxas info    : Used 47 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb1ELb0ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    32 bytes stack frame, 20 bytes spill stores, 28 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb1ELb1ELb1EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    112 bytes stack frame, 108 bytes spill stores, 132 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z22reduceGBISEnergyKerneliPK20TileListVirialEnergyP12VirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z22reduceGBISEnergyKerneliPK20TileListVirialEnergyP12VirialEnergy
    8 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 20 registers, 296 bytes smem, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20nonbondedForceKernelILb1ELb1ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy' for 'sm_35'
ptxas info    : Function properties for _Z20nonbondedForceKernelILb1ELb1ELb1ELb1ELb0EEviiPK8TileListP8TileExclPKiiPK6float2S6_fffPK6float4fyyifPK15PatchPairRecordS6_PK4int2PKjPjPiSM_P12TileListStatPK11BoundingBoxPSA_SS_iSL_PK15CudaPatchRecordSS_SS_SM_SM_P20TileListVirialEnergy
    96 bytes stack frame, 92 bytes spill stores, 100 bytes spill loads
ptxas info    : Used 48 registers, 584 bytes cmem[0], 8 bytes cmem[2]
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/main.o -c src/main.C
ptxas info    : 0 bytes gmem
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li6ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li6ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    72 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 5504 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi6ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi6ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_
    24 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 30 registers, 2688 bytes smem, 392 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z29batchTranspose_xyz_yzx_kernelI6float2EvPK14TransposeBatchIT_Eiiii' for 'sm_35'
ptxas info    : Function properties for _Z29batchTranspose_xyz_yzx_kernelI6float2EvPK14TransposeBatchIT_Eiiii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 22 registers, 8448 bytes smem, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_Z23scalar_sum_ortho_kernelIf6float2Lb1ELb0EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_' for 'sm_35'
ptxas info    : Function properties for _Z23scalar_sum_ortho_kernelIf6float2Lb1ELb0EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 432 bytes cmem[0], 28 bytes cmem[2]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li4ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li4ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 37 registers, 3968 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi4ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi4ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 37 registers, 1920 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li8ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li8ELb1ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    96 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 47 registers, 7040 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi8ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi8ELb1ELb0EEvPK6float4ifffiiiiiiiiiPT_
    32 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 3456 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li6ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li6ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    72 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 40 registers, 5504 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi6ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi6ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_
    24 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 30 registers, 2688 bytes smem, 392 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z29batchTranspose_xyz_zxy_kernelI6float2EvPK14TransposeBatchIT_Eiiii' for 'sm_35'
ptxas info    : Function properties for _Z29batchTranspose_xyz_zxy_kernelI6float2EvPK14TransposeBatchIT_Eiiii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 20 registers, 8448 bytes smem, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_Z23scalar_sum_ortho_kernelIf6float2Lb0ELb0EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_' for 'sm_35'
ptxas info    : Function properties for _Z23scalar_sum_ortho_kernelIf6float2Lb0ELb0EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 25 registers, 432 bytes cmem[0], 28 bytes cmem[2]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li4ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li4ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 33 registers, 3968 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi4ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi4ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 38 registers, 1920 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li8ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li8ELb0ELb0EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    96 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 45 registers, 7040 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi8ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi8ELb0ELb0EEvPK6float4ifffiiiiiiiiiPT_
    32 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 3456 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li6ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li6ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    136 bytes stack frame, 64 bytes spill stores, 68 bytes spill loads
ptxas info    : Used 48 registers, 5504 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi6ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi6ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_
    24 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 30 registers, 2688 bytes smem, 392 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z24transpose_xyz_yzx_kernelI6float2EviiiiiiiPKT_PS1_' for 'sm_35'
ptxas info    : Function properties for _Z24transpose_xyz_yzx_kernelI6float2EviiiiiiiPKT_PS1_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 20 registers, 8448 bytes smem, 368 bytes cmem[0]
ptxas info    : Compiling entry function '_Z23scalar_sum_ortho_kernelIf6float2Lb1ELb1EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_' for 'sm_35'
ptxas info    : Function properties for _Z23scalar_sum_ortho_kernelIf6float2Lb1ELb1EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 432 bytes cmem[0], 28 bytes cmem[2]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li4ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li4ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 48 registers, 3968 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi4ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi4ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 35 registers, 1920 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li8ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li8ELb1ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    368 bytes stack frame, 276 bytes spill stores, 392 bytes spill loads
ptxas info    : Used 48 registers, 7040 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi8ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi8ELb1ELb1EEvPK6float4ifffiiiiiiiiiPT_
    32 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 3456 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li6ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li6ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    72 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 44 registers, 5504 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi6ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi6ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_
    24 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 30 registers, 2688 bytes smem, 392 bytes cmem[0], 8 bytes cmem[2]
ptxas info    : Compiling entry function '_Z24transpose_xyz_zxy_kernelI6float2EviiiiiiiPKT_PS1_' for 'sm_35'
ptxas info    : Function properties for _Z24transpose_xyz_zxy_kernelI6float2EviiiiiiiPKT_PS1_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 21 registers, 8448 bytes smem, 368 bytes cmem[0]
ptxas info    : Compiling entry function '_Z23scalar_sum_ortho_kernelIf6float2Lb0ELb1EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_' for 'sm_35'
ptxas info    : Function properties for _Z23scalar_sum_ortho_kernelIf6float2Lb0ELb1EEviiiiiiiiiT_S1_S1_PKS1_S3_S3_S1_S1_iiPT0_PdS6_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 25 registers, 432 bytes cmem[0], 28 bytes cmem[2]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li4ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li4ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 38 registers, 3968 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi4ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi4ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 37 registers, 1920 bytes smem, 392 bytes cmem[0]
ptxas info    : Compiling entry function '_Z18gather_force_orthoIf6float3Li8ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_' for 'sm_35'
ptxas info    : Function properties for _Z18gather_force_orthoIf6float3Li8ELb0ELb1EEvPK6float4iiiiiiiiiifffPKfyiPT0_
    96 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 7040 bytes smem, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_Z26spread_charge_ortho_kernelIfLi8ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_' for 'sm_35'
ptxas info    : Function properties for _Z26spread_charge_ortho_kernelIfLi8ELb0ELb1EEvPK6float4ifffiiiiiiiiiPT_
    32 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 3456 bytes smem, 392 bytes cmem[0]
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/mainfunc.o -c src/mainfunc.C
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 64 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 255 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 128 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 255 computed using thread count
ptxas info    : Overriding global maxrregcount 48 with entry-specific value 128 computed using thread count
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BackEnd.o -c src/BackEnd.C
CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Node.o -c src/Node.C
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -L.rootdir/tcl/lib -ltcl8.5 -ldl  -lm
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I.rootdir/tcl/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR  -o sortreplicas obj/sortreplicas.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -lm
ptxas info    : 1 bytes gmem
ptxas info    : Compiling entry function '_ZN3cub21DeviceScanSweepKernelINS_12DispatchScanIPiS2_NS_3SumEiiE18PtxAgentScanPolicyES2_S2_NS_13ScanTileStateIiLb1EEES3_iiEEvT0_T1_T2_T3_T4_T5_' for 'sm_35'
ptxas info    : Function properties for _ZN3cub21DeviceScanSweepKernelINS_12DispatchScanIPiS2_NS_3SumEiiE18PtxAgentScanPolicyES2_S2_NS_13ScanTileStateIiLb1EEES3_iiEEvT0_T1_T2_T3_T4_T5_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 1536 bytes smem, 356 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z21bitshiftTileListDepthiiPKiPKjPj' for 'sm_35'
ptxas info    : Function properties for _Z21bitshiftTileListDepthiiPKiPKjPj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 10 registers, 352 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb1EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb1EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 45 registers, 4224 bytes smem, 384 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z21bitshiftTileListDepthiiPj' for 'sm_35'
ptxas info    : Function properties for _Z21bitshiftTileListDepthiiPj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 8 registers, 336 bytes cmem[0]
ptxas info    : Compiling entry function '_Z9localSortILi32EEviiiPjPi' for 'sm_35'
ptxas info    : Function properties for _Z9localSortILi32EEviiiPjPi
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 30 registers, 1168 bytes smem, 352 bytes cmem[0]
ptxas info    : Compiling entry function '_Z33setPatchNumLists_findEmptyPatchesiP8TileListPKiiPiS3_' for 'sm_35'
ptxas info    : Function properties for _Z33setPatchNumLists_findEmptyPatchesiP8TileListPKiiPiS3_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 16 registers, 368 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub23RadixSortScanBinsKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520EiEEvPT0_i' for 'sm_35'
ptxas info    : Function properties for _ZN3cub23RadixSortScanBinsKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520EiEEvPT0_i
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 24 registers, 176 bytes smem, 332 bytes cmem[0]
ptxas info    : Compiling entry function '_Z24buildBoundingBoxesKerneliPK6float4P11BoundingBox' for 'sm_35'
ptxas info    : Function properties for _Z24buildBoundingBoxesKerneliPK6float4P11BoundingBox
    24 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 25 registers, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb0EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb0EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 45 registers, 4224 bytes smem, 384 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z13buildSortKeysiiPK8TileListPKiPKjP4int2Pj' for 'sm_35'
ptxas info    : Function properties for _Z13buildSortKeysiiPK8TileListPKiPKjP4int2Pj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 13 registers, 368 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb1EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb1EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 93 registers, 8864 bytes smem, 408 bytes cmem[0]
ptxas info    : Compiling entry function '_Z19updatePatchesKernelILi32EEviPKiPK17CudaComputeRecordPK15CudaPatchRecordP8TileList' for 'sm_35'
ptxas info    : Function properties for _Z19updatePatchesKernelILi32EEviPKiPK17CudaComputeRecordPK15CudaPatchRecordP8TileList
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 18 registers, 360 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_ZN3cub11EmptyKernelIvEEvv' for 'sm_35'
ptxas info    : Function properties for _ZN3cub11EmptyKernelIvEEvv
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 2 registers, 320 bytes cmem[0]
ptxas info    : Compiling entry function '_Z12setupSortKeyiiPK8TileListPKjiS3_Pj' for 'sm_35'
ptxas info    : Function properties for _Z12setupSortKeyiiPK8TileListPKjiS3_Pj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 15 registers, 368 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb0EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb0EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 84 registers, 7760 bytes smem, 408 bytes cmem[0]
ptxas info    : Compiling entry function '_Z21repackTileListsKerneliiPKiS0_S0_PK8TileListPS1_PK15PatchPairRecordPS5_S0_PiPK8TileExclPSA_' for 'sm_35'
ptxas info    : Function properties for _Z21repackTileListsKerneliiPKiS0_S0_PK8TileListPS1_PK15PatchPairRecordPS5_S0_PiPK8TileExclPSA_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 31 registers, 416 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub31DeviceRadixSortSingleTileKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0EjiiEEvPT1_S5_PT2_S7_T3_ii' for 'sm_35'
ptxas info    : Function properties for _ZN3cub31DeviceRadixSortSingleTileKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0EjiiEEvPT1_S5_PT2_S7_T3_ii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 92 registers, 8736 bytes smem, 364 bytes cmem[0]
ptxas info    : Compiling entry function '_Z17initMinMaxListLeniiP4int2' for 'sm_35'
ptxas info    : Function properties for _Z17initMinMaxListLeniiP4int2
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 10 registers, 336 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb1EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb1EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 42 registers, 2112 bytes smem, 384 bytes cmem[0]
ptxas info    : Compiling entry function '_Z21calcTileListPosKernelILi1024EEviPK17CudaComputeRecordPK15CudaPatchRecordPi' for 'sm_35'
ptxas info    : Function properties for _Z21calcTileListPosKernelILi1024EEviPK17CudaComputeRecordPK15CudaPatchRecordPi
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 40 registers, 4240 bytes smem, 352 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_Z19sortTileListsKernelIjiLb0EEviiiiT_PS0_S1_PT0_S3_' for 'sm_35'
ptxas info    : Function properties for _Z19sortTileListsKernelIjiLb0EEviiiiT_PS0_S1_PT0_S3_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 118 registers, 45056 bytes smem, 376 bytes cmem[0]
ptxas info    : Compiling entry function '_Z23buildRemoveZerosSortKeyiPKjiPj' for 'sm_35'
ptxas info    : Function properties for _Z23buildRemoveZerosSortKeyiPKjiPj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 10 registers, 352 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb0EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb0ELb0EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 93 registers, 8864 bytes smem, 408 bytes cmem[0]
ptxas info    : Compiling entry function '_Z22buildTileListsBBKerneliP8TileListPK15CudaPatchRecordPKiffffiPK11BoundingBoxPiiPjS9_P15PatchPairRecordP12TileListStat' for 'sm_35'
ptxas info    : Function properties for _Z22buildTileListsBBKerneliP8TileListPK15CudaPatchRecordPKiffffiPK11BoundingBoxPiiPjS9_P15PatchPairRecordP12TileListStat
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 46 registers, 432 bytes cmem[0], 4 bytes cmem[2]
ptxas info    : Compiling entry function '_ZN3cub20DeviceScanInitKernelINS_13ScanTileStateIiLb1EEEEEvT_i' for 'sm_35'
ptxas info    : Function properties for _ZN3cub20DeviceScanInitKernelINS_13ScanTileStateIiLb1EEEEEvT_i
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 7 registers, 332 bytes cmem[0]
ptxas info    : Compiling entry function '_Z14storeInReverseiiPKiS0_S0_PKjPiPj' for 'sm_35'
ptxas info    : Function properties for _Z14storeInReverseiiPKiS0_S0_PKjPiPj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 13 registers, 376 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub31DeviceRadixSortSingleTileKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1EjiiEEvPT1_S5_PT2_S7_T3_ii' for 'sm_35'
ptxas info    : Function properties for _ZN3cub31DeviceRadixSortSingleTileKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1EjiiEEvPT1_S5_PT2_S7_T3_ii
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 92 registers, 8736 bytes smem, 364 bytes cmem[0]
ptxas info    : Compiling entry function '_Z20reOrderTileListDepthiPKiPjS1_' for 'sm_35'
ptxas info    : Function properties for _Z20reOrderTileListDepthiPKiPjS1_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 7 registers, 352 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb0EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub28DeviceRadixSortUpsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb0EjiEEvPT2_PT3_S6_iiNS_13GridEvenShareIS6_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 42 registers, 2112 bytes smem, 384 bytes cmem[0]
ptxas info    : Compiling entry function '_Z12fillSortKeysiiPK4int2Pj' for 'sm_35'
ptxas info    : Function properties for _Z12fillSortKeysiiPK4int2Pj
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 14 registers, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_Z19sortTileListsKernelIjiLb1EEviiiiT_PS0_S1_PT0_S3_' for 'sm_35'
ptxas info    : Function properties for _Z19sortTileListsKernelIjiLb1EEviiiiT_PS0_S1_PT0_S3_
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 118 registers, 45056 bytes smem, 376 bytes cmem[0]
ptxas info    : Compiling entry function '_Z17calcPatchNumListsiiPK8TileListPi' for 'sm_35'
ptxas info    : Function properties for _Z17calcPatchNumListsiiPK8TileListPi
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 11 registers, 344 bytes cmem[0]
ptxas info    : Compiling entry function '_ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb1EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE' for 'sm_35'
ptxas info    : Function properties for _ZN3cub30DeviceRadixSortDownsweepKernelINS_21DeviceRadixSortPolicyIjiiE9Policy520ELb1ELb1EjiiEEvPT2_S5_PT3_S7_PT4_S8_iiNS_13GridEvenShareIS8_EE
    0 bytes stack frame, 0 bytes spill stores, 0 bytes spill loads
ptxas info    : Used 84 registers, 7760 bytes smem, 408 bytes cmem[0]
rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"bwjenkins\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; CC -std=c++11 -DNOHOSTNAME -DNO_GETPWUID -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Isrc -Iinc    -Iplugins/include -DSTATIC_PLUGIN -I.rootdir/tcl/include -DNAMD_TCL  -I/opt/cray/fftw/3.3.4.10/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_CUDA -I. -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/include -I/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/Debugger/include -I.rootdir/cub  -DMEM_OPT_VERSION  -DNAMD_VERSION=\"2.12b1\" -DNAMD_PLATFORM=\"CRAY-XE-ugni-smp-CUDA-memopt\"  -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR    -DUSE_CKLOOP=1 -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/buildinfo.o -c obj/buildinfo.C
const char *namd_build_date =  "Sat Mar 17 19:52:26 CDT 2018";
const char *namd_build_user =  "bwjenkins";
const char *namd_build_machine =  "h2ologin2";
.rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmc -verbose -ld++-option \
	'-I.rootdir/charm-6.7.1/gni-crayxe-smp/include -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer' \
	-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast -module CkLoop -language charm++ \
	obj/buildinfo.o \
	obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o  \
	obj/ComputeNonbondedCUDAKernel.o obj/ComputePmeCUDAKernel.o obj/CudaComputeGBISKernel.o obj/CudaComputeNonbondedKernel.o obj/CudaPmeSolverUtilKernel.o obj/CudaTileListKernel.o obj/DeviceCUDAkernel.o \
	-lcudart -lcufft -L/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/lib64 -L/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/lib64 -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -L/opt/cray/nvidia/default/lib64 -lcuda \
	 \
	 \
	 \
	-L.rootdir/tcl/lib -ltcl8.5 -ldl \
	 \
	-L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -lfftw3f \
	obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \
	obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o \
	 \
	 \
	-lm -o namd2
Verbose mode set
Adding file obj/buildinfo.o...
Adding file obj/ComputeMoa.o...
Adding file obj/ComputeMsm.o...
Adding file obj/ComputeMsmMsa.o...
Adding file obj/ComputeMsmSerial.o...
Adding file obj/ComputeFmmSerial.o...
Adding file obj/msm.o...
Adding file obj/msm_longrng.o...
Adding file obj/msm_longrng_sprec.o...
Adding file obj/msm_setup.o...
Adding file obj/msm_shortrng.o...
Adding file obj/msm_shortrng_sprec.o...
Adding file obj/wkfutils.o...
Adding file obj/common.o...
Adding file obj/dcdlib.o...
Adding file obj/eabf1D.o...
Adding file obj/eabf2D.o...
Adding file obj/eabffunc.o...
Adding file obj/eabfTcl.o...
Adding file obj/erf.o...
Adding file obj/fitrms.o...
Adding file obj/main.o...
Adding file obj/mainfunc.o...
Adding file obj/memusage.o...
Adding file obj/strlib.o...
Adding file obj/AlgSeven.o...
Adding file obj/AlgRecBisection.o...
Adding file obj/AlgNbor.o...
Adding file obj/AtomMap.o...
Adding file obj/BackEnd.o...
Adding file obj/BroadcastMgr.o...
Adding file obj/BroadcastClient.o...
Adding file obj/CollectionMaster.o...
Adding file obj/CollectionMgr.o...
Adding file obj/Communicate.o...
Adding file obj/Compute.o...
Adding file obj/ComputeAngles.o...
Adding file obj/ComputeAniso.o...
Adding file obj/ComputeBonds.o...
Adding file obj/ComputeConsForce.o...
Adding file obj/ComputeConsForceMsgs.o...
Adding file obj/ComputeCrossterms.o...
Adding file obj/ComputeCUDAMgr.o...
Adding file obj/ComputeCylindricalBC.o...
Adding file obj/ComputeDihedrals.o...
Adding file obj/ComputeDPME.o...
Adding file obj/ComputeDPMEMsgs.o...
Adding file obj/ComputeDPMTA.o...
Adding file obj/ComputeEField.o...
Adding file obj/ComputeEwald.o...
Adding file obj/ComputeExt.o...
Adding file obj/ComputeQM.o...
Adding file obj/ComputeGBISser.o...
Adding file obj/ComputeGBIS.o...
Adding file obj/ComputeGromacsPair.o...
Adding file obj/ComputeLCPO.o...
Adding file obj/ComputeFullDirect.o...
Adding file obj/ComputeHomePatch.o...
Adding file obj/ComputeHomePatches.o...
Adding file obj/ComputeImpropers.o...
Adding file obj/ComputeGlobal.o...
Adding file obj/ComputeGlobalMsgs.o...
Adding file obj/ComputeGridForce.o...
Adding file obj/ComputeMap.o...
Adding file obj/ComputeMgr.o...
Adding file obj/ComputeNonbondedSelf.o...
Adding file obj/ComputeNonbondedPair.o...
Adding file obj/ComputeNonbondedUtil.o...
Adding file obj/ComputeNonbondedStd.o...
Adding file obj/ComputeNonbondedFEP.o...
Adding file obj/ComputeNonbondedGo.o...
Adding file obj/ComputeNonbondedTI.o...
Adding file obj/ComputeNonbondedLES.o...
Adding file obj/ComputeNonbondedPProf.o...
Adding file obj/ComputeNonbondedTabEnergies.o...
Adding file obj/ComputeNonbondedCUDA.o...
Adding file obj/ComputeNonbondedCUDAExcl.o...
Adding file obj/ComputeNonbondedMIC.o...
Adding file obj/ComputeNonbondedMICKernel.o...
Adding file obj/ComputePatch.o...
Adding file obj/ComputePatchPair.o...
Adding file obj/ComputePme.o...
Adding file obj/ComputePmeCUDA.o...
Adding file obj/ComputePmeCUDAMgr.o...
Adding file obj/OptPme.o...
Adding file obj/OptPmeRealSpace.o...
Adding file obj/ComputeRestraints.o...
Adding file obj/ComputeSphericalBC.o...
Adding file obj/ComputeStir.o...
Adding file obj/ComputeTclBC.o...
Adding file obj/ComputeThole.o...
Adding file obj/ConfigList.o...
Adding file obj/Controller.o...
Adding file obj/CudaComputeNonbonded.o...
Adding file obj/CudaPmeSolver.o...
Adding file obj/CudaPmeSolverUtil.o...
Adding file obj/CudaUtils.o...
Adding file obj/ccsinterface.o...
Adding file obj/DataStream.o...
Adding file obj/DeviceCUDA.o...
Adding file obj/DumpBench.o...
Adding file obj/FreeEnergyAssert.o...
Adding file obj/FreeEnergyGroup.o...
Adding file obj/FreeEnergyLambda.o...
Adding file obj/FreeEnergyLambdMgr.o...
Adding file obj/FreeEnergyParse.o...
Adding file obj/FreeEnergyRestrain.o...
Adding file obj/FreeEnergyRMgr.o...
Adding file obj/FreeEnergyVector.o...
Adding file obj/fstream_namd.o...
Adding file obj/GlobalMaster.o...
Adding file obj/GlobalMasterServer.o...
Adding file obj/GlobalMasterTest.o...
Adding file obj/GlobalMasterIMD.o...
Adding file obj/GlobalMasterTcl.o...
Adding file obj/GlobalMasterSMD.o...
Adding file obj/GlobalMasterTMD.o...
Adding file obj/Matrix4Symmetry.o...
Adding file obj/GlobalMasterSymmetry.o...
Adding file obj/GlobalMasterFreeEnergy.o...
Adding file obj/GlobalMasterEasy.o...
Adding file obj/GlobalMasterMisc.o...
Adding file obj/colvar.o...
Adding file obj/colvaratoms.o...
Adding file obj/colvarbias.o...
Adding file obj/colvarbias_abf.o...
Adding file obj/colvarbias_alb.o...
Adding file obj/colvarbias_histogram.o...
Adding file obj/colvarbias_meta.o...
Adding file obj/colvarbias_restraint.o...
Adding file obj/colvarcomp.o...
Adding file obj/colvarcomp_angles.o...
Adding file obj/colvarcomp_coordnums.o...
Adding file obj/colvarcomp_distances.o...
Adding file obj/colvarcomp_protein.o...
Adding file obj/colvarcomp_rotations.o...
Adding file obj/colvardeps.o...
Adding file obj/colvargrid.o...
Adding file obj/colvarmodule.o...
Adding file obj/colvarparse.o...
Adding file obj/colvarproxy_namd.o...
Adding file obj/colvarscript.o...
Adding file obj/colvartypes.o...
Adding file obj/colvarvalue.o...
Adding file obj/GridForceGrid.o...
Adding file obj/GromacsTopFile.o...
Adding file obj/heap.o...
Adding file obj/HomePatch.o...
Adding file obj/IMDOutput.o...
Adding file obj/InfoStream.o...
Adding file obj/LdbCoordinator.o...
Adding file obj/LJTable.o...
Adding file obj/Measure.o...
Adding file obj/MGridforceParams.o...
Adding file obj/MStream.o...
Adding file obj/MigrateAtomsMsg.o...
Adding file obj/Molecule.o...
Adding file obj/Molecule2.o...
Adding file obj/GoMolecule.o...
Adding file obj/MoleculeQM.o...
Adding file obj/NamdCentLB.o...
Adding file obj/NamdNborLB.o...
Adding file obj/NamdHybridLB.o...
Adding file obj/NamdDummyLB.o...
Adding file obj/NamdState.o...
Adding file obj/NamdOneTools.o...
Adding file obj/Node.o...
Adding file obj/Output.o...
Adding file obj/Parameters.o...
Adding file obj/ParseOptions.o...
Adding file obj/Patch.o...
Adding file obj/PatchMgr.o...
Adding file obj/PatchMap.o...
Adding file obj/PDB.o...
Adding file obj/PDBData.o...
Adding file obj/PmeKSpace.o...
Adding file obj/PmeRealSpace.o...
Adding file obj/PmeSolver.o...
Adding file obj/ProcessorPrivate.o...
Adding file obj/ProxyMgr.o...
Adding file obj/ProxyPatch.o...
Adding file obj/Rebalancer.o...
Adding file obj/RecBisection.o...
Adding file obj/ReductionMgr.o...
Adding file obj/RefineOnly.o...
Adding file obj/RefineTorusLB.o...
Adding file obj/ScriptTcl.o...
Adding file obj/Sequencer.o...
Adding file obj/Set.o...
Adding file obj/Settle.o...
Adding file obj/SimParameters.o...
Adding file obj/SortAtoms.o...
Adding file obj/Sync.o...
Adding file obj/TclCommands.o...
Adding file obj/TorusLB.o...
Adding file obj/WorkDistrib.o...
Adding file obj/pub3dfft.o...
Adding file obj/vmdsock.o...
Adding file obj/parm.o...
Adding file obj/imd.o...
Adding file obj/CompressPsf.o...
Adding file obj/PluginIOMgr.o...
Adding file obj/DataExchanger.o...
Adding file obj/ParallelIOMgr.o...
Adding file obj/ComputeNonbondedCUDAKernel.o...
Adding file obj/ComputePmeCUDAKernel.o...
Adding file obj/CudaComputeGBISKernel.o...
Adding file obj/CudaComputeNonbondedKernel.o...
Adding file obj/CudaPmeSolverUtilKernel.o...
Adding file obj/CudaTileListKernel.o...
Adding file obj/DeviceCUDAkernel.o...
Adding file obj/dcdplugin.o...
Adding file obj/jsplugin.o...
Adding file obj/namdbinplugin.o...
Adding file obj/pdbplugin.o...
Adding file obj/psfplugin.o...
Adding file obj/tcl_psfgen.o...
Adding file obj/charmm_file.o...
Adding file obj/charmm_parse_topo_defs.o...
Adding file obj/extract_alias.o...
Adding file obj/hash.o...
Adding file obj/hasharray.o...
Adding file obj/memarena.o...
Adding file obj/pdb_file.o...
Adding file obj/pdb_file_extract.o...
Adding file obj/psf_file.o...
Adding file obj/psf_file_extract.o...
Adding file obj/topo_defs.o...
Adding file obj/topo_mol.o...
Adding file obj/topo_mol_output.o...
Adding file obj/topo_mol_pluginio.o...
Adding file obj/stringhash.o...
OpenMP support not enabled
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete ------------
charmc: Executing CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -U_FORTIFY_SOURCE -std=c++0x -c moduleinit43845.C -o moduleinit43845.o
Adding registration for module NeighborLB
Adding registration for module HybridLB
Adding registration for module RefineLB
Adding registration for module GreedyLB
Adding registration for module CkMulticast
Adding registration for module CkLoop
charmc: Executing CC -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D_REENTRANT -rdynamic -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -L/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/lib64 -L/opt/nvidia/cudatoolkit7.5/7.5.18-1.0502.10743.2.1/extras/CUPTI/lib64 -L/opt/cray/nvidia/default/lib64 -L.rootdir/tcl/lib -L/opt/cray/fftw/3.3.4.10/interlagos/lib/lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/include -o namd2 -L.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../include obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/ComputeNonbondedCUDAKernel.o obj/ComputePmeCUDAKernel.o obj/CudaComputeGBISKernel.o obj/CudaComputeNonbondedKernel.o obj/CudaPmeSolverUtilKernel.o obj/CudaTileListKernel.o obj/DeviceCUDAkernel.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o moduleinit43845.o -lmoduleCkLoop -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lckqt -lpthread -lrt -ldl -lcudart -lcufft -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -lcuda -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleCkLoop -lm
charmc> All libraries are: -L.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../lib -I.rootdir/charm-6.7.1/gni-crayxe-smp/bin/../include obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/eabf1D.o obj/eabf2D.o obj/eabffunc.o obj/eabfTcl.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCUDAMgr.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeQM.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/ComputePmeCUDA.o obj/ComputePmeCUDAMgr.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/CudaComputeNonbonded.o obj/CudaPmeSolver.o obj/CudaPmeSolverUtil.o obj/CudaUtils.o obj/ccsinterface.o obj/DataStream.o obj/DeviceCUDA.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_histogram.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvardeps.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/MoleculeQM.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/PmeSolver.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/ComputeNonbondedCUDAKernel.o obj/ComputePmeCUDAKernel.o obj/CudaComputeGBISKernel.o obj/CudaComputeNonbondedKernel.o obj/CudaPmeSolverUtilKernel.o obj/CudaTileListKernel.o obj/DeviceCUDAkernel.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o moduleinit43845.o -lmoduleCkLoop -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lckqt -lpthread -lrt -ldl -lcudart -lcufft -Wl,--as-needed -Wl,-lcupti -Wl,-lcudart -Wl,--no-as-needed -lcuda -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleCkLoop -lm
charmc: Executing rm -f charmrun
charmc: Executing cp -p .rootdir/charm-6.7.1/gni-crayxe-smp/bin/charmrun charmrun
rm -f moduleinit43845.C moduleinit43845.o
/mnt/a/u/system/bwjenkins/namd-spp/namd-spp-1.0
     1	#!/bin/bash
     2	#PBS -V
     3	#PBS -j oe
     4	#PBS -o $PBS_JOBID/pbs.out
     5	#PBS -N NAMD
     6	#PBS -l walltime=1:00:00
     7	#PBS -l nodes=100:ppn=32:xe
     8	##PBS -q debug
     9	
    10	cd $PBS_O_WORKDIR
    11	
    12	mkdir $PBS_JOBID
    13	cd $PBS_JOBID
    14	
    15	execfile=$PBS_O_WORKDIR/namd2-cpu
    16	inputfile=$PBS_O_WORKDIR/chromat100/chromat100-bench.namd
    17	logfile=$PBS_JOBID
    18	
    19	export NAMDNSTEPS=2000
    20	export NAMDOUTDIR="${PBS_O_WORKDIR}/${PBS_JOBID}"
    21	
    22	source ${MODULESHOME}/init/bash
    23	module swap PrgEnv-cray PrgEnv-gnu
    24	module load rca
    25	module load craype-hugepages8M
    26	module list
    27	
    28	export HUGETLB_DEFAULT_PAGE_SIZE=8M
    29	export HUGETLB_MORECORE=no
    30	export ATP_ENABLED=1
    31	ulimit -c unlimited
    32	
    33	export APRUN_BALANCED_INJECTION=32
    34	
    35	sleep 60
    36	echo Starting at `date`
    37	
    38	aprun -n 400 -N 4 -d 8 $execfile +ppn 7 +pemap 1-7,9-15,17-23,25-31 +commap 0,8,16,24 $inputfile >& $logfile
    39	
    40	echo Ending at `date`
    41	sleep 60
    42	
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: The qsub '-V' option is deprecated. Please include your environment variables directly in your job script.
INFO: Job submitted to account: jnc
MYJOBID=8319697.bw
=== RUNNING /u/system/bwjenkins/bin/wait_for.sh ===
Sat Mar 17 19:52:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 19:57:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:02:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:07:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:12:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:17:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:22:45 CDT 2018: waiting for 8319697.bw to finish
Sat Mar 17 20:27:45 CDT 2018: waiting for 8319697.bw to finish
qstat: Unknown Job Id Error 8319697.bw
8319697.bw finished
Info: ENERGY OUTPUT STEPS    200
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
ENERGY:       0    862368.3646  20606396.3109   1749214.6220    152022.8999      -370808357.2691  34496069.0570         0.0000         0.0000  69208716.2169      -243733569.7977       296.9741 -312942286.0146 -243190413.0872       296.9741           -107.3698         7.8259 979501677.5393      -107.3698         7.8259
ENERGY:     200    876518.0042  20899073.0514   1750801.8575    153242.4221      -370525798.5753  34401033.7315         0.0000         0.0000  68906761.7333      -243538367.7753       295.6784 -312445129.5085 -242986943.3954       295.6257           -127.3915       -12.6215 979744263.0650         0.7761         0.7716
ENERGY:     400    877052.5455  20924705.7625   1749597.5241    153311.0031      -370474837.3021  34384558.1760         0.0000         0.0000  68945694.3421      -243439917.9487       295.8455 -312385612.2909 -242885034.6817       295.8342           -131.6248       -16.9012 979779755.6293         1.2822         1.2881
ENERGY:     600    877215.6507  20943052.7360   1750361.3148    153258.6419      -370462291.2488  34383402.8882         0.0000         0.0000  68987816.8238      -243367183.1935       296.0262 -312355000.0172 -242810785.6435       295.9859           -133.1596       -18.2181 979827290.0328         1.1741         1.1783
ENERGY:     800    873999.3102  20965809.8530   1750541.7122    153565.5799      -370546623.2337  34480262.3497         0.0000         0.0000  69003074.2075      -243319370.2211       296.0917 -312322444.4286 -242762543.9304       296.0827            -87.0743        28.0946 979648307.5944         0.8968         0.8994
ENERGY:    1000    876215.8899  20980311.9040   1750677.0399    153979.1085      -370545829.8403  34494659.0043         0.0000         0.0000  69016124.6824      -243273862.2113       296.1477 -312289986.8937 -242717083.2548       296.1796            -76.2754        38.2910 979582572.5550         0.7492         0.7470
ENERGY:    1200    877541.1664  20980848.3270   1750920.6999    153208.4026      -370429737.6910  34402626.8824         0.0000         0.0000  69030803.6493      -243233788.5634       296.2107 -312264592.2126 -242675469.9861       296.2338           -117.8175        -3.4336 979866674.8696         1.0084         1.0209
ENERGY:    1400    878277.5865  21001196.9112   1751458.9956    152820.4788      -370436901.2014  34403425.0755         0.0000         0.0000  69036868.6185      -243212853.5353       296.2367 -312249722.1538 -242654690.9317       296.2817           -116.1190        -1.4460 979792439.3766         1.2606         1.2614
ENERGY:    1600    876022.4049  20993502.3643   1751444.3239    152922.0302      -370444125.7428  34422133.9378         0.0000         0.0000  69055450.3200      -243192650.3617       296.3164 -312248100.6817 -242634179.8420       296.3302           -104.1945        10.8484 979718430.5276         0.8910         0.8941
ENERGY:    1800    877735.3238  20998543.1374   1750853.5904    153295.3393      -370431468.9789  34416657.6653         0.0000         0.0000  69071195.6622      -243163188.2606       296.3840 -312234383.9228 -242605142.3230       296.3682           -104.8518        10.0810 979727099.0188         0.7410         0.7385
ENERGY:    2000    876819.0354  21006306.5375   1750206.0161    153506.7784      -370394841.4233  34402836.1312         0.0000         0.0000  69067040.3476      -243138126.5772       296.3662 -312205166.9248 -242578701.3681       296.4103           -107.9257         6.7509 979758869.3144         0.9581         0.9488
     1	YVALUE= 1415.636597
[SSH] exit-status: 0
[namd-spp] $ /bin/sh -xe /tmp/jenkins3444163067577331874.sh
+ rm -rf /var/lib/jenkins/workspace/namd-spp/wallclock.txt
+ scp 'BW_REMOTE:~/namd-spp/wallclock.txt' /var/lib/jenkins/workspace/namd-spp

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.


Blue Waters Admin Team


Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/namd-spp/wallclock.txt
Finished: SUCCESS