Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/qmcpack-jyc
executing script:


module list
rm -rf qmcpack-spp
tar xzf ~arnoldg/qmcpack_spp_20180222_jyc.tgz
cd qmcpack-spp/qmcpack-3.2.0/build
module unload PrgEnv-cray
module use /u/vendor/cray/dalton/modulefiles
module load PrgEnv/cray-18_06-cuda-9.1
./build_script_cpu_complex
cd ../../runs/cpu_4

MYJOBID=`qsub bw.pbs`
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID

MYREAL=`grep real qmcpack.err | cut -d' ' -f2`
echo MYREAL=$MYREAL
echo YVALUE=$MYREAL > ~/qmcpack-spp/realtime.txt
./energy.pl gr4x4x1.p400x8.s001.scalar.dat 0 | grep LocalEnergy | awk '{print $3}'
Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.38.1-1.0502.21728.74.1
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.19.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.19.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) cce/8.5.8
 14) craype-network-gemini
 15) craype/2.5.9
 16) cray-libsci/16.11.1
 17) pmi/5.0.11
 18) rca/1.0.0-2.0502.60530.1.63.gem
 19) atp/2.1.0
 20) PrgEnv-cray/5.2.82
 21) moab/9.1.2.h2-sles11
 22) torque/6.1.2
 23) craype-interlagos
 24) cray-mpich/7.5.3
 25) java/jdk1.8.0_51
 26) globus/5.2.5
 27) gsissh/6.2p2
 28) xalt/0.7.6.local
 29) scripts
 30) OpenSSL/1.0.2m
 31) cURL/7.59.0
 32) git/2.17.0
 33) wget/1.19.4
 34) user-paths
 35) gnuplot/5.0.5
 36) darshan/3.1.3
PrgEnv-gnu/5.2.82(7):ERROR:150: Module 'PrgEnv-gnu/5.2.82' conflicts with the currently loaded module(s) 'PrgEnv/cray-18_06-cuda-9.1'
PrgEnv-gnu/5.2.82(7):ERROR:102: Tcl command execution failed: conflict PrgEnv

Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.38.1-1.0502.21728.74.1
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.19.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.19.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) craype-network-gemini
 14) craype-interlagos
 15) craype/2.5.15
 16) moab/9.1.2.h2-sles11
 17) torque/6.1.2
 18) cray-mpich/7.7.1
 19) java/jdk1.8.0_51
 20) globus/5.2.5
 21) gsissh/6.2p2
 22) xalt/0.7.6.local
 23) scripts
 24) OpenSSL/1.0.2m
 25) cURL/7.59.0
 26) git/2.17.0
 27) wget/1.19.4
 28) user-paths
 29) gnuplot/5.0.5
 30) darshan/3.1.3
 31) cce/8.7.1
 32) cray-libsci/18.04.1
 33) pmi/5.0.14
 34) rca/1.0.0-2.0502.60530.1.63.gem
 35) atp/2.1.2
 36) PrgEnv/cray-18_06-cuda-9.1
 37) cray-hdf5/1.10.0.1
 38) fftw/3.3.4.11
 39) boost/1.53.0
 40) cmake/3.1.3
 41) craype-hugepages2M
-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /opt/cray/craype/default/bin/cc
CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec1267766806/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec1267766806.dir/build.make
  CMakeFiles/cmTryCompileExec1267766806.dir/build

  gmake[1]: Entering directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec1267766806.dir/testCCompiler.c.o

  /opt/cray/craype/default/bin/cc -I/u/staff/rmokos/libs/amdlibm/include -o
  CMakeFiles/cmTryCompileExec1267766806.dir/testCCompiler.c.o -c
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c


  sh: /opt/cray/cce/8.7.1/cce/x86_64/lib/clx: No such file or directory

  CC-2144 craycc: ERROR in command line

    "/opt/cray/cce/8.7.1/cce/x86_64/lib/ccfe" is not an executable file.

  gmake[1]: *** [CMakeFiles/cmTryCompileExec1267766806.dir/testCCompiler.c.o]
  Error 1

  gmake[1]: Leaving directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec1267766806/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:1 (PROJECT)


-- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log".
-- The C compiler identification is unknown
CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec2188246912/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec2188246912.dir/build.make
  CMakeFiles/cmTryCompileExec2188246912.dir/build

  gmake[1]: Entering directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec2188246912.dir/testCCompiler.c.o

  /opt/cray/craype/default/bin/cc -march=bdver1 -msse -msse2 -msse3 -msse4.1
  -D_CRAYMPI -fopenmp -O3 -Drestrict=__restrict__ -finline-limit=1000
  -fstrict-aliasing -funroll-all-loops -Wno-deprecated -ffast-math
  -funroll-loops -fomit-frame-pointer -malign-double -DDISABLE_TIMER=1
  -DHAVE_FMA4=1 -DHAVE_AMDLIBM=1 -DENABLE_SOA=1 -DQMC_MIXED_PRECISION=1
  -D__forceinline="__attribute__((always_inline))" -std=c99
  -I/u/staff/rmokos/libs/amdlibm/include -o
  CMakeFiles/cmTryCompileExec2188246912.dir/testCCompiler.c.o -c
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c


  CC-2115 craycc: ERROR in command line

    "-march=bdver1" is an invalid command-line option.

  CC-2115 craycc: ERROR in command line

    "-msse" is an invalid command-line option.

  CC-2115 craycc: ERROR in command line

    "-msse2" is an invalid command-line option.

  CC-2115 craycc: ERROR in command line

    "-msse3" is an invalid command-line option.

  CC-2115 craycc: ERROR in command line

    "-msse4.1" is an invalid command-line option.

  CC-2118 craycc: ERROR in command line

    "n" is not a valid phase letter to the -W option.

  CC-2115 craycc: ERROR in command line

    "-malign-double" is an invalid command-line option.

  CC-2289 craycc: ERROR in command line

    Invalid characters after option '-s' in command line item '-std=c99'.

  sh: /opt/cray/cce/8.7.1/cce/x86_64/lib/clx: No such file or directory

  gmake[1]: *** [CMakeFiles/cmTryCompileExec2188246912.dir/testCCompiler.c.o]
  Error 1

  gmake[1]: Leaving directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec2188246912/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:1 (PROJECT)


make: *** No targets specified and no makefile found.  Stop.
./build_script_cpu_complex: line 38: cd: bin: No such file or directory
mv: cannot stat `qmcpack': No such file or directory
-- The CXX compiler identification is unknown
-- Check for working C compiler: /opt/cray/craype/default/bin/cc
-- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log".
INFO: Job submitted to account: jnc
MYJOBID=242580.jyc
=== RUNNING /u/staff/arnoldg/ior/wait_for.sh ===
Thu Jun 28 08:35:47 CDT 2018: waiting for 242580.jyc to finish
Thu Jun 28 08:40:47 CDT 2018: waiting for 242580.jyc to finish
qstat: Unknown Job Id Error 242580.nid00030
242580.jyc finished
MYREAL=0.93
Cannot open file gr4x4x1.p400x8.s001.scalar.dat
[SSH] exit-status: 0
[qmcpack-jyc] $ /bin/sh -xe /tmp/jenkins1922914018838731239.sh
+ rm -rf /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt
+ scp 'JYC_REMOTE:~/qmcpack-spp/*.txt' /var/lib/jenkins/workspace/qmcpack-jyc
NCSA JYC System 
Access status: User Access UnRestricted.

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM

Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt
Finished: SUCCESS