Started by timer Building on master in workspace /var/lib/jenkins/workspace/qmcpack-spp executing script: set -v rm -rf qmcpack-spp tar xzf /projects/bluewaters/benchmarking/SPP/qmcpack/qmcpack_spp_20180220.tgz cd qmcpack-spp/qmcpack-3.2.0/build ./build_script_cpu_complex cd ../../runs/cpu_100 MYJOBID=`qsub bw.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID MYREAL=`grep real qmcpack.err | cut -d' ' -f2` echo MYREAL=$MYREAL echo YVALUE=$MYREAL > ~/qmcpack-spp/realtime.txt ./energy.pl gr4x4x1.p400x8.s001.scalar.dat 0 | grep LocalEnergy | awk '{print $3}' rm -rf qmcpack-spp tar xzf /projects/bluewaters/benchmarking/SPP/qmcpack/qmcpack_spp_20180220.tgz cd qmcpack-spp/qmcpack-3.2.0/build ./build_script_cpu_complex Currently Loaded Modulefiles: 1) modules/3.2.10.4 2) eswrap/1.3.3-1.020200.1280.0 3) craype-interlagos 4) craype-network-gemini 5) craype/2.5.8 6) cray-mpich/7.5.0 7) torque/6.0.4 8) moab/9.1.2-sles11 9) java/jdk1.8.0_51 10) globus/5.2.5 11) gsissh/6.2p2 12) xalt/0.7.6.local 13) scripts 14) OpenSSL/1.0.2m 15) cURL/7.56.1 16) git/2.15.0 17) wget/1.19.2 18) user-paths 19) gnuplot/5.0.5 20) darshan/3.1.3 21) gcc/4.9.3 22) cray-libsci/16.11.1 23) udreg/2.3.2-1.0502.10518.2.17.gem 24) ugni/6.0-1.0502.10863.8.28.gem 25) pmi/5.0.10-1.0000.11050.179.3.gem 26) dmapp/7.0.1-1.0502.11080.8.74.gem 27) gni-headers/4.0-1.0502.10859.7.8.gem 28) xpmem/0.1-2.0502.64982.5.3.gem 29) dvs/2.5_0.9.0-1.0502.2188.1.113.gem 30) alps/5.2.4-2.0502.9774.31.12.gem 31) rca/1.0.0-2.0502.60530.1.63.gem 32) atp/2.0.4 33) PrgEnv-gnu/5.2.82 34) cray-hdf5/1.10.0 35) fftw/3.3.4.10 36) boost/1.53.0 37) cmake/3.1.3 38) craype-hugepages2M -- The C compiler identification is GNU 4.9.3 -- The CXX compiler identification is GNU 4.9.3 -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /opt/cray/craype/default/bin/CC -- Check for working CXX compiler: /opt/cray/craype/default/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features Base precision = double Full precision = double -- Detecting CXX compile features - done -- QMC_SYMLINK_TEST_FILES = TRUE. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF. -- CMAKE_BUILD_TYPE is -- defining the float point precision -- Looking for sincos -- Looking for sincos - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Found Git: /sw/EasyBuild/software/git/2.15.0/bin/git (found version "2.15.0") -- Using /mnt/a/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/config/attic/BWGNU.cmake toolchain -- Performing Test CXX_COMPILER_SUPPORT_CXX11 -- Performing Test CXX_COMPILER_SUPPORT_CXX11 - Success -- MPI runner is mpirun -- CXX compiler flags: -std=c++11 -- CC compiler flags: -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- FFTW_INCLUDE_DIR=/opt/cray/fftw/default/interlagos/include -- FFTW_LIBRARIES=/opt/cray/fftw/default/interlagos/lib/libfftw3.a -- Found FFTW -- Found ZLIB: /usr/lib64/libz.a (found version "1.2.7") -- Trying libxml2 via LIBXML2_HOME -- LIBXML2_INCLUDE_DIR=/usr/include/libxml2/libxml -- LIBXML2_LIBRARIES=/usr/lib64/libxml2.a -- Libxml2 found by FindLibxml2QMC -- Found HDF5: /opt/cray/hdf5/default/GNU/4.9/lib/libhdf5.a -- Using HDF5 non-scalable serial I/O due to the lack of library support for parallel -- Boost version: 1.53.0 -- Setting Boost_INCLUDE_DIRS=/sw/xe/boost/default/sles11.3_gnu4.8.2/include -- Disabling CUDA -- Ready to build qmcpack Adding tests for QMCPACK Skipping all gaussian basis tests because they are not supported by complex build (QMC_COMPLEX=1) Adding test short-LiH_solid_1x1x1_pp-gamma-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-dmcnl-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-dmcnl-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-dmcnl-hf_noj-1-16 Adding test short-bccH_1x1x1_ae-vmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-dmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-vmc-all-nodrift_sdj-1-16 Adding test short-bccH_1x1x1_ae-vmc-all_sdj-1-16 Adding test short-bccH_1x1x1_ae-dmc-all_sdj-1-16 Adding test short-bccH_1x1x1_ae-csvmc-pbyp-nodrift_sdj-16-1 Adding test short-bccH_1x1x1_ae-csvmc-all-nodrift_sdj-16-1 Adding test short-bccH_1x1x1_ae-csvmc-all_sdj-16-1 Adding test short-bccH_1x1x1_ae-rmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-rmc_sdj-4-4 Adding test short-bccH_1x1x1_ae-vmc_sdj-pw-1-16 Adding test short-diamondC_1x1x1_pp-vmc_sdj-1-16 Adding test short-diamondC_1x1x1_pp-vmc_sdj-meshf-1-16 Adding test short-diamondC_1x1x1_pp-opt_sdj-1-16 Adding test short-diamondC_1x1x1_pp-dmc_sdj-1-16 Adding test short-diamondC_2x1x1_pp-vmc_sdj-1-16 Adding test short-diamondC_2x1x1_pp-dmc_sdj-1-16 Adding test short-hcpBe_1x1x1_pp-vmc_sdj-1-16 Adding test short-monoO_1x1x1_pp-vmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-vmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-dmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-rmc_sdj-1-16 Adding test long-diamondC_1x1x1_pp-vmc_sdj-1-16 Adding test long-diamondC_1x1x1_pp-vmc_sdj-meshf-1-16 Adding test long-diamondC_1x1x1_pp-dmc_sdj-1-16 Adding test long-diamondC_2x1x1_pp-vmc_sdj-1-16 Adding test long-diamondC_2x1x1_pp-dmc_sdj-1-16 Adding test long-hcpBe_1x1x1_pp-vmc_sdj-1-16 Adding test long-monoO_1x1x1_pp-vmc_sdj-1-16 Adding estimator tests for QMCPACK Missing python module h5py, not adding test estimator-skinetic Missing python module pandas, not adding test estimator-latdev Missing python module h5py, not adding test estimator-latdev Adding I/O tests for QMCPACK Adding test restart-8-2 Adding test restart-1-16 Adding performance tests for QMCPACK QMC_DATA not set. Performance tests not added. QMC_DATA not set. Performance tests not added. Adding example tests for QMCPACK -- Configuring done Base precision = double Full precision = double -- Generating done -- Build files have been written to: /mnt/a/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build -- QMC_SYMLINK_TEST_FILES = TRUE. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF. -- CMAKE_BUILD_TYPE is -- defining the float point precision -- Using ../config/attic/BWGNU.cmake toolchain -- MPI runner is mpirun -- CXX compiler flags: -std=c++11 -march=bdver1 -msse -msse2 -msse3 -msse4.1 -D_CRAYMPI -fopenmp -O3 -Drestrict=__restrict__ -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -Wno-deprecated -ffast-math -funroll-loops -fomit-frame-pointer -malign-double -DDISABLE_TIMER=1 -DHAVE_FMA4=1 -DHAVE_AMDLIBM=1 -DENABLE_SOA=1 -DQMC_MIXED_PRECISION=1 -D__forceinline="__attribute__((always_inline))" -ftemplate-depth-60 -DADD_ -DINLINE_ALL=inline -- CC compiler flags: -march=bdver1 -msse -msse2 -msse3 -msse4.1 -D_CRAYMPI -fopenmp -O3 -Drestrict=__restrict__ -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -Wno-deprecated -ffast-math -funroll-loops -fomit-frame-pointer -malign-double -DDISABLE_TIMER=1 -DHAVE_FMA4=1 -DHAVE_AMDLIBM=1 -DENABLE_SOA=1 -DQMC_MIXED_PRECISION=1 -D__forceinline="__attribute__((always_inline))" -std=c99 -- FFTW_INCLUDE_DIR=/opt/cray/fftw/default/interlagos/include -- FFTW_LIBRARIES=/opt/cray/fftw/default/interlagos/lib/libfftw3.a -- Found FFTW -- Trying libxml2 via LIBXML2_HOME -- LIBXML2_INCLUDE_DIR=/usr/include/libxml2/libxml -- LIBXML2_LIBRARIES=/usr/lib64/libxml2.a -- Libxml2 found by FindLibxml2QMC -- Using HDF5 non-scalable serial I/O due to the lack of library support for parallel -- Boost version: 1.53.0 -- Setting Boost_INCLUDE_DIRS=/sw/xe/boost/default/sles11.3_gnu4.8.2/include -- Disabling CUDA -- Ready to build qmcpack Adding tests for QMCPACK Skipping all gaussian basis tests because they are not supported by complex build (QMC_COMPLEX=1) Adding test short-LiH_solid_1x1x1_pp-gamma-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-drift-vmc_hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-dmc-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-gamma-dmcnl-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-x-dmcnl-hf_noj-1-16 Adding test short-LiH_solid_1x1x1_pp-arb-dmcnl-hf_noj-1-16 Adding test short-bccH_1x1x1_ae-vmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-dmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-vmc-all-nodrift_sdj-1-16 Adding test short-bccH_1x1x1_ae-vmc-all_sdj-1-16 Adding test short-bccH_1x1x1_ae-dmc-all_sdj-1-16 Adding test short-bccH_1x1x1_ae-csvmc-pbyp-nodrift_sdj-16-1 Adding test short-bccH_1x1x1_ae-csvmc-all-nodrift_sdj-16-1 Adding test short-bccH_1x1x1_ae-csvmc-all_sdj-16-1 Adding test short-bccH_1x1x1_ae-rmc_sdj-1-16 Adding test short-bccH_1x1x1_ae-rmc_sdj-4-4 Adding test short-bccH_1x1x1_ae-vmc_sdj-pw-1-16 Adding test short-diamondC_1x1x1_pp-vmc_sdj-1-16 Adding test short-diamondC_1x1x1_pp-vmc_sdj-meshf-1-16 Adding test short-diamondC_1x1x1_pp-opt_sdj-1-16 Adding test short-diamondC_1x1x1_pp-dmc_sdj-1-16 Adding test short-diamondC_2x1x1_pp-vmc_sdj-1-16 Adding test short-diamondC_2x1x1_pp-dmc_sdj-1-16 Adding test short-hcpBe_1x1x1_pp-vmc_sdj-1-16 Adding test short-monoO_1x1x1_pp-vmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-vmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-dmc_sdj-1-16 Adding test long-bccH_1x1x1_ae-rmc_sdj-1-16 Adding test long-diamondC_1x1x1_pp-vmc_sdj-1-16 Adding test long-diamondC_1x1x1_pp-vmc_sdj-meshf-1-16 Adding test long-diamondC_1x1x1_pp-dmc_sdj-1-16 Adding test long-diamondC_2x1x1_pp-vmc_sdj-1-16 Adding test long-diamondC_2x1x1_pp-dmc_sdj-1-16 Adding test long-hcpBe_1x1x1_pp-vmc_sdj-1-16 Adding test long-monoO_1x1x1_pp-vmc_sdj-1-16 Adding estimator tests for QMCPACK Missing python module h5py, not adding test estimator-skinetic Missing python module pandas, not adding test estimator-latdev Missing python module h5py, not adding test estimator-latdev Adding I/O tests for QMCPACK Adding test restart-8-2 Adding test restart-1-16 Adding performance tests for QMCPACK QMC_DATA not set. Performance tests not added. QMC_DATA not set. Performance tests not added. Adding example tests for QMCPACK -- Configuring done -- Generating done -- Build files have been written to: /mnt/a/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build Scanning dependencies of target qmcfakerng [ 0%] Building CXX object src/CMakeFiles/qmcfakerng.dir/Utilities/FakeRandom.cpp.o Scanning dependencies of target einspline [ 1%] Building C object src/einspline/CMakeFiles/einspline.dir/bspline_create.c.o Scanning dependencies of target oompi [ 1%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Cart_comm.cc.o Linking CXX static library ../lib/libqmcfakerng.a [ 1%] Built target qmcfakerng [ 1%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Constants.cc.o [ 1%] Building C object src/einspline/CMakeFiles/einspline.dir/bspline_data.c.o [ 2%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Comm.cc.o [ 2%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Comm_world.cc.o [ 2%] Building C object src/einspline/CMakeFiles/einspline.dir/multi_bspline_create.c.o Scanning dependencies of target formic_utils [ 2%] Building CXX object src/formic/utils/CMakeFiles/formic_utils.dir/matrix.cpp.o [ 2%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Datatype.cc.o [ 2%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Environment.cc.o [ 2%] Building C object src/einspline/CMakeFiles/einspline.dir/multi_nubspline_create.c.o [ 3%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Error_table.cc.o [ 3%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Graph_comm.cc.o [ 4%] Building C object src/einspline/CMakeFiles/einspline.dir/nubspline_create.c.o [ 4%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Group.cc.o [ 4%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Inter_comm.cc.o [ 5%] Building C object src/einspline/CMakeFiles/einspline.dir/nubasis.c.o [ 5%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Intra_comm.cc.o [ 5%] Building CXX object src/OOMPI/CMakeFiles/oompi.dir/Linked_list.cc.o [ 5%] Building CXX object 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Linking CXX executable ../../bin/MSDgenerator Linking CXX static library ../../lib/libqmcwfs.a [ 95%] Built target convert4qmc [ 95%] Built target qmcwfs [ 95%] Built target MSDgenerator Scanning dependencies of target test_wavefunction [ 95%] [ 95%] Building CXX object src/QMCWaveFunctions/tests/CMakeFiles/test_wavefunction.dir/test_wf.cpp.o Building CXX object src/QMCWaveFunctions/tests/CMakeFiles/test_wavefunction.dir/test_bspline_jastrow.cpp.o Scanning dependencies of target qmcpack Scanning dependencies of target test_qmcapp Scanning dependencies of target test_estimators Scanning dependencies of target test_drivers [ 95%] [ 95%] [ 95%] Building CXX object src/QMCApp/CMakeFiles/qmcpack.dir/qmcapp.cpp.o Building CXX object src/QMCApp/tests/CMakeFiles/test_qmcapp.dir/test_project_data.cpp.o Building CXX object src/Estimators/tests/CMakeFiles/test_estimators.dir/test_accumulator.cpp.o [ 95%] Building CXX object src/QMCDrivers/tests/CMakeFiles/test_drivers.dir/test_vmc.cpp.o Scanning 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[ 99%] Building CXX object src/QMCApp/tests/CMakeFiles/test_qmcapp.dir/test_wavefunction_pool.cpp.o [ 99%] Building CXX object src/QMCWaveFunctions/tests/CMakeFiles/test_wavefunction.dir/test_pw.cpp.o [100%] Building CXX object src/QMCHamiltonians/tests/CMakeFiles/test_hamiltonian.dir/test_coulomb_pbcAA.cpp.o Linking CXX executable ../../../tests/bin/test_qmcapp [100%] Building CXX object src/QMCHamiltonians/tests/CMakeFiles/test_hamiltonian.dir/test_force.cpp.o Linking CXX executable ../../../tests/bin/test_estimators [100%] Built target test_estimators [100%] Building CXX object src/QMCHamiltonians/tests/CMakeFiles/test_hamiltonian.dir/test_ecp.cpp.o Linking CXX executable ../../../tests/bin/test_drivers [100%] Building CXX object src/QMCWaveFunctions/tests/CMakeFiles/test_wavefunction.dir/test_polynomial_eeI_jastrow.cpp.o [100%] Built target test_qmcapp [100%] Built target test_drivers Linking CXX executable ../../../tests/bin/test_wavefunction [100%] Built target test_wavefunction Linking CXX executable ../../../tests/bin/test_hamiltonian cd ../../runs/cpu_100 MYJOBID=`qsub bw.pbs` qsub bw.pbs [100%] Built target test_hamiltonian ERROR: No allocation for project account (jnc). Please specify a project acount with valid allocation. e.g. 'qsub -A <project_account> job.script.sh' Please contact help+bw@ncsa.illinois.edu if you need assistance. Username: bwjenkins Primary Project Allocation ------------- *jnc | General Blue Waters system charge group | Remaining: 0 ------------- Available Alternate Allocations ------------- jnd | Blue Waters CPU benchmarking team group | Remaining: 64839 qsub: Your job has been administratively rejected by the queueing system. qsub: There may be a more detailed explanation prior to this notice. echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID MYREAL=`grep real qmcpack.err | cut -d' ' -f2` grep real qmcpack.err | cut -d' ' -f2 grep: qmcpack.err: No such file or directory echo MYREAL=$MYREAL echo YVALUE=$MYREAL > ~/qmcpack-spp/realtime.txt ./energy.pl gr4x4x1.p400x8.s001.scalar.dat 0 | grep LocalEnergy | awk '{print $3}' Cannot open file gr4x4x1.p400x8.s001.scalar.dat MYJOBID= === RUNNING /u/staff/arnoldg/ior/wait_for.sh === /u/staff/arnoldg/ior/wait_for.sh: missing argument for jobid MYREAL= [SSH] exit-status: 0 [qmcpack-spp] $ /bin/sh -xe /tmp/jenkins2799632608343956112.sh + rm -rf /var/lib/jenkins/workspace/qmcpack-spp/realtime.txt + scp 'BW_REMOTE:~/qmcpack-spp/*.txt' /var/lib/jenkins/workspace/qmcpack-spp Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Blue Waters Admin Team Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/qmcpack-spp/realtime.txt Finished: SUCCESS