Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/rmg-spp-newpe
executing script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
HOME="/var/lib/jenkins"

set -v

# specify installation directory
export INSTDIR=~/rmg-spp
#rm -rf $INSTDIR
mkdir $INSTDIR
 
# begin newpe testing
module unload cce cray-mpich
module load cce/8.5.5
module load cray-mpich/7.5.0
# end newpe testing
 
module swap PrgEnv-cray PrgEnv-gnu
module swap gcc gcc/4.9.3
module load boost
module load cmake/3.1.3
module load fftw

export CRAYPE_LINK_TYPE=dynamic
export CRAY_ADD_RPATH=yes
 
# install openbabel library
cd $INSTDIR
wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz
tar zxvf openbabel-2.3.2.tar.gz
cd openbabel-2.3.2/
mkdir build
cd build/
cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/openbabel-2.3.2/install ..
nice make -j8
make install
 
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib
 
export CC=cc
export CXX=CC
export FC=ftn
 
# install plplot library
cd $INSTDIR
git clone git://git.code.sf.net/p/plplot/plplot plplot.git
cd plplot.git/
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/plplot.git/install ..
make
make install
 
# install CPU-version of RMG
cd $INSTDIR
wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz
tar zxvf rmg-release_2.1.tar.gz
cd rmg-release_2.1
mkdir build-cpu; cd build-cpu
cmake -DOPENBABEL_INCLUDES=$INSTDIR/openbabel-2.3.2/install/include/openbabel-2.0/openbabel -DOPENBABEL_LIBRARIES=$INSTDIR/openbabel-2.3.2/install/lib/libopenbabel.so.4.0.2 -DPLplot_INCLUDE_DIR=$INSTDIR/plplot.git/install/include -DPLplot_cxx_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplotcxx.so -DPLplot_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplot.so ..
nice make -j12 rmg-cpu

rm -rf /u/system/bwjenkins/scratch/rmg-spp
mkdir -p /u/system/bwjenkins/scratch/rmg-spp
#cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs
#cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/
cp /projects/bluewaters/benchmarking/SPP/rmg/small/* ~/scratch/rmg-spp/
cd ~bwjenkins/scratch/rmg-spp
cp ~bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu ./
cat run.pbs | sed -e "s/aprun/time aprun/g"  > myrunA.pbs
cat myrunA.pbs | sed -e "s/OMP_NUM_THREADS=1/OM_NUM_THREADS=1\nexport LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:\$HOME\/rmg-spp\/openbabel-2.3.2\/install\/lib/g" > myrun.pbs

cat -n myrun.pbs

MYJOBID=`qsub myrun.pbs`
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
tail *.log > ~/rmg-spp/rmg.logtail.txt

grep "real" z302water_cpu100.o*
MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` 
echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime
cat -n ~/rmg-spp/rmg.realtime

# specify installation directory
export INSTDIR=~/rmg-spp
#rm -rf $INSTDIR
mkdir $INSTDIR
mkdir: cannot create directory `/var/lib/jenkins/rmg-spp': No such file or directory
 
# begin newpe testing
module unload cce cray-mpich
module load cce/8.5.5
module load cray-mpich/7.5.0
# end newpe testing
 
module swap PrgEnv-cray PrgEnv-gnu
${MODULESHOME}/bin/modulecmd bash $*
CRAY_LD_LIBRARY_PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/CRAY/8.3/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:craype-network-gemini:craype/2.5.4:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-cray/5.2.82:craype-interlagos:torque/6.0.1:moab/9.0.2.TAS2-1477409647_6706986-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6 ;export LOADEDMODULES;MANPATH=/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t2/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t2/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t2/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t2/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_PKGCONFIG_LIBS=darshan-runtime:AtpSigHandler:cray-rca:libsci_mpi:libsci ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS2-1477409647_6706986-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6 ;export _LMFILES_;unset ASSEMBLER_X86_64;unset CC_X86_64;unset CRAYLIBS_X86_64;unset CRAYLMD_LICENSE_FILE;unset CRAY_BINUTILS_BIN;unset CRAY_BINUTILS_ROOT;unset CRAY_BINUTILS_VERSION;unset CRAY_CC_VERSION;unset CRAY_CXX_IPA_LIBS;unset CRAY_FTN_VERSION;unset CRAY_MPICH2_DIR;unset CRAY_MPICH2_VER;unset CRAY_MPICH_BASEDIR;unset CRAY_MPICH_DIR;unset CRAY_MPICH_ROOTDIR;unset FORTRAN_SYSTEM_MODULE_NAMES;unset FTN_X86_64;unset GCC_X86_64;unset INCLUDE_PATH_X86_64;unset LINKER_X86_64;unset MPICH_DIR;unset NLSPATH;unset PE_CXX_PKGCONFIG_LIBS;unset PE_FORTRAN_PKGCONFIG_LIBS;unset PE_INTEL_FIXED_PKGCONFIG_PATH;unset PE_LEVEL;unset PE_MPICH_CXX_PKGCONFIG_LIBS;unset PE_MPICH_DIR_CRAY_DEFAULT64;unset PE_MPICH_DIR_PGI_DEFAULT64;unset PE_MPICH_FIXED_PRGENV;unset PE_MPICH_FORTRAN_PKGCONFIG_LIBS;unset PE_MPICH_GENCOMPILERS_CRAY;unset PE_MPICH_GENCOMPILERS_GNU;unset PE_MPICH_GENCOMPILERS_PGI;unset PE_MPICH_GENCOMPS_CRAY;unset PE_MPICH_GENCOMPS_GNU;unset PE_MPICH_GENCOMPS_PGI;unset PE_MPICH_MODULE_NAME;unset PE_MPICH_MULTITHREADED_LIBS_multithreaded;unset PE_MPICH_NV_LIBS;unset PE_MPICH_NV_LIBS_nvidia20;unset PE_MPICH_NV_LIBS_nvidia35;unset PE_MPICH_PKGCONFIG_LIBS;unset PE_MPICH_PKGCONFIG_VARIABLES;unset PE_MPICH_TARGET_VAR_nvidia20;unset PE_MPICH_TARGET_VAR_nvidia35;unset PE_MPICH_VOLATILE_PKGCONFIG_PATH;unset PE_MPICH_VOLATILE_PRGENV;
${MODULESHOME}/bin/modulecmd bash $*
ASSEMBLER_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/bin/aarch64-linux-gnu-as ;export ASSEMBLER_AARCH64;ASSEMBLER_X86_64=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/as ;export ASSEMBLER_X86_64;CC_X86_64=/opt/cray/cce/8.5.5/CC/x86-64 ;export CC_X86_64;CRAYLIBS_AARCH64=/opt/cray/cce/8.5.5/craylibs/aarch64 ;export CRAYLIBS_AARCH64;CRAYLIBS_X86_64=/opt/cray/cce/8.5.5/craylibs/x86-64 ;export CRAYLIBS_X86_64;CRAYLMD_LICENSE_FILE=/opt/cray/cce/cce.lic ;export CRAYLMD_LICENSE_FILE;CRAY_BINUTILS_BIN=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin ;export CRAY_BINUTILS_BIN;CRAY_BINUTILS_BIN_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/aarch64-unknowun-linux-gnu/bin ;export CRAY_BINUTILS_BIN_AARCH64;CRAY_BINUTILS_ROOT=/opt/cray/cce/8.5.5/cray-binutils ;export CRAY_BINUTILS_ROOT;CRAY_BINUTILS_ROOT_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils ;export CRAY_BINUTILS_ROOT_AARCH64;CRAY_BINUTILS_VERSION=/opt/cray/cce/8.5.5 ;export CRAY_BINUTILS_VERSION;CRAY_CC_VERSION=8.5.5 ;export CRAY_CC_VERSION;CRAY_CXX_IPA_LIBS=/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64/libcray-c++-rts.a ;export CRAY_CXX_IPA_LIBS;CRAY_CXX_IPA_LIBS_AARCH64=/opt/cray/cce/8.5.5/CC/x86-64/lib/aarch64/libcray-c++-rts.a ;export CRAY_CXX_IPA_LIBS_AARCH64;CRAY_FTN_VERSION=8.5.5 ;export CRAY_FTN_VERSION;CRAY_LD_LIBRARY_PATH=/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/CRAY/8.3/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;FORTRAN_SYSTEM_MODULE_NAMES=ftn_lib_definitions ;export FORTRAN_SYSTEM_MODULE_NAMES;FTN_X86_64=/opt/cray/cce/8.5.5/cftn/x86-64 ;export FTN_X86_64;GCC_AARCH64=/opt/gcc-cross-aarch64/4.8.1/aarch64 ;export GCC_AARCH64;GCC_X86_64=/opt/gcc/4.8.1/snos ;export GCC_X86_64;INCLUDE_PATH_AARCH64=/opt/cray/cce/8.5.5/craylibs/aarch64/include ;export INCLUDE_PATH_AARCH64;INCLUDE_PATH_X86_64=/opt/cray/cce/8.5.5/craylibs/x86-64/include ;export INCLUDE_PATH_X86_64;LINKER_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/bin/aarch64-linux-gnu-ld ;export LINKER_AARCH64;LINKER_X86_64=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld ;export LINKER_X86_64;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:craype-network-gemini:craype/2.5.4:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-cray/5.2.82:craype-interlagos:torque/6.0.1:moab/9.0.2.TAS2-1477409647_6706986-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cce/8.5.5 ;export LOADEDMODULES;MANPATH=/opt/cray/cce/8.5.5/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t2/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t2/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;NLSPATH=/opt/cray/cce/8.5.5/CC/x86-64/nls/En/%N.cat:/opt/cray/cce/8.5.5/craylibs/x86-64/nls/En/%N.cat:/opt/cray/cce/8.5.5/cftn/x86-64/nls/En/%N.cat ;export NLSPATH;PATH=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t2/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t2/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_LEVEL=8.5 ;export PE_LEVEL;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS2-1477409647_6706986-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/modulefiles/cce/8.5.5 ;export _LMFILES_;
${MODULESHOME}/bin/modulecmd bash $*
CRAY_LD_LIBRARY_PATH=/opt/cray/mpt/7.5.0/gni/mpich-cray/8.4/lib:/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/CRAY/8.3/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;CRAY_MPICH2_DIR=/opt/cray/mpt/7.5.0/gni/mpich-cray/8.4 ;export CRAY_MPICH2_DIR;CRAY_MPICH2_VER=7.5.0 ;export CRAY_MPICH2_VER;CRAY_MPICH_BASEDIR=/opt/cray/mpt/7.5.0/gni ;export CRAY_MPICH_BASEDIR;CRAY_MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-cray/8.4 ;export CRAY_MPICH_DIR;CRAY_MPICH_ROOTDIR=/opt/cray/mpt/7.5.0 ;export CRAY_MPICH_ROOTDIR;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:craype-network-gemini:craype/2.5.4:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-cray/5.2.82:craype-interlagos:torque/6.0.1:moab/9.0.2.TAS2-1477409647_6706986-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cce/8.5.5:cray-mpich/7.5.0 ;export LOADEDMODULES;MANPATH=/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/cce/8.5.5/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t2/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t2/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-cray/8.4 ;export MPICH_DIR;PATH=/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t2/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t2/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_CXX_PKGCONFIG_LIBS;PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_FORTRAN_PKGCONFIG_LIBS;PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/mpich-intel/16.0/lib/pkgconfig ;export PE_INTEL_FIXED_PKGCONFIG_PATH;PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_MPICH_CXX_PKGCONFIG_LIBS;PE_MPICH_DIR_CRAY_DEFAULT64=64 ;export PE_MPICH_DIR_CRAY_DEFAULT64;PE_MPICH_DIR_PGI_DEFAULT64=64 ;export PE_MPICH_DIR_PGI_DEFAULT64;PE_MPICH_FIXED_PRGENV=INTEL ;export PE_MPICH_FIXED_PRGENV;PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_MPICH_FORTRAN_PKGCONFIG_LIBS;PE_MPICH_GENCOMPILERS_CRAY=8.4 ;export PE_MPICH_GENCOMPILERS_CRAY;PE_MPICH_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_MPICH_GENCOMPILERS_GNU;PE_MPICH_GENCOMPILERS_PGI=15.3 ;export PE_MPICH_GENCOMPILERS_PGI;PE_MPICH_GENCOMPS_CRAY=84 ;export PE_MPICH_GENCOMPS_CRAY;PE_MPICH_GENCOMPS_GNU=51\ 49 ;export PE_MPICH_GENCOMPS_GNU;PE_MPICH_GENCOMPS_PGI=153 ;export PE_MPICH_GENCOMPS_PGI;PE_MPICH_MODULE_NAME=cray-mpich ;export PE_MPICH_MODULE_NAME;PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt ;export PE_MPICH_MULTITHREADED_LIBS_multithreaded;PE_MPICH_NV_LIBS= ;export PE_MPICH_NV_LIBS;PE_MPICH_NV_LIBS_nvidia20=-lcudart ;export PE_MPICH_NV_LIBS_nvidia20;PE_MPICH_NV_LIBS_nvidia35=-lcudart ;export PE_MPICH_NV_LIBS_nvidia35;PE_MPICH_PKGCONFIG_LIBS=mpich ;export PE_MPICH_PKGCONFIG_LIBS;PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ ;export PE_MPICH_PKGCONFIG_VARIABLES;PE_MPICH_TARGET_VAR_nvidia20=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia20;PE_MPICH_TARGET_VAR_nvidia35=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia35;PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig ;export PE_MPICH_VOLATILE_PKGCONFIG_PATH;PE_MPICH_VOLATILE_PRGENV=CRAY\ GNU\ PGI ;export PE_MPICH_VOLATILE_PRGENV;PE_PKGCONFIG_LIBS=mpich:darshan-runtime:AtpSigHandler:cray-rca:libsci_mpi:libsci ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS2-1477409647_6706986-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/modulefiles/cce/8.5.5:/opt/cray/modulefiles/cray-mpich/7.5.0 ;export _LMFILES_;
${MODULESHOME}/bin/modulecmd bash $*
Build was aborted
Aborted by arnoldg
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/rmg-spp-newpe/rmg.realtime
Finished: ABORTED