Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/vpic-spp
executing script:

set -v
module unload darshan
module load git
rm -rf vpic-spp
mkdir vpic-spp
cd  vpic-spp/
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz
tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz
./build_vpic_407
cd runs/4_nodes
./build_input_deck test_4n.cxx

MYJOBID=`qsub bw.pbs`
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
cp vpic.* ~/vpic-spp/


grep "simulation time" vpic.err
MYSIMTIME=`grep time: vpic.err| cut -d: -f3` 
echo "YVALUE= $MYSIMTIME" > ~/vpic-spp/vpic.simtime
cat -n ~/vpic-spp/vpic.simtime

grep "real" vpic.err
MYREALTIME=`grep real vpic.err| cut -d' ' -f2` 
echo "YVALUE= $MYREALTIME" > ~/vpic-spp/vpic.realtime
cat -n ~/vpic-spp/vpic.realtime

module unload darshan
module load git
rm -rf vpic-spp
mkdir vpic-spp
cd  vpic-spp/
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz
tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz
./build_vpic_407
--2018-02-27 08:35:38--  https://github.com/vpic/vpic/archive/v407.zip
Resolving github.com... 192.30.253.113, 192.30.253.112
Connecting to github.com|192.30.253.113|:443... ${MODULESHOME}/bin/modulecmd bash $*
LD_LIBRARY_PATH=/usr/local/globus-5.2.5/lib64:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:cce/8.4.6:craype-network-gemini:craype/2.5.8:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-cray/5.2.82:cray-mpich/7.5.0:craype-interlagos:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths ;export LOADEDMODULES;MANPATH=/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t7/share/man/:/opt/torque/6.0.4/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/atp/2.0.4/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.11.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.8/man:/opt/cray/cce/8.4.6/man:/opt/cray/cce/8.4.6/craylibs/man:/opt/cray/cce/8.4.6/CC/man:/opt/cray/cce/8.4.6/cftn/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t7/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/cce/8.4.6/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.4.6/craylibs/x86-64/bin:/opt/cray/cce/8.4.6/cftn/bin:/opt/cray/cce/8.4.6/CC/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_PKGCONFIG_LIBS=mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci ;export PE_PKGCONFIG_LIBS;PKG_CONFIG_PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/pkgconfig:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64/pkgconfig:/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64/pkgconfig:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64/pkgconfig:/opt/cray/craype/2.5.8/pkg-config:/opt/cray/iobuf/2.0.7/lib/pkgconfig:/opt/cray/atp/2.0.4/lib/pkgconfig ;export PKG_CONFIG_PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/cce/8.4.6:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths ;export _LMFILES_;unset DARSHAN_LOGPATH;unset EBDEVELGNUPLOT;unset EBROOTGNUPLOT;unset EBVERSIONGNUPLOT;
${MODULESHOME}/bin/modulecmd bash $*
ACLOCAL_PATH=/sw/EasyBuild/software/cURL/7.56.1/share/aclocal ;export ACLOCAL_PATH;CPATH=/sw/EasyBuild/software/cURL/7.56.1/include:/sw/EasyBuild/software/OpenSSL/1.0.2m/include ;export CPATH;CURL_INCLUDES=/sw/EasyBuild/software/cURL/7.56.1/include ;export CURL_INCLUDES;EBDEVELCURL=/sw/EasyBuild/software/cURL/7.56.1/easybuild/cURL-7.56.1-easybuild-devel ;export EBDEVELCURL;EBDEVELGIT=/sw/EasyBuild/software/git/2.15.0/easybuild/git-2.15.0-easybuild-devel ;export EBDEVELGIT;EBDEVELOPENSSL=/sw/EasyBuild/software/OpenSSL/1.0.2m/easybuild/OpenSSL-1.0.2m-easybuild-devel ;export EBDEVELOPENSSL;EBROOTCURL=/sw/EasyBuild/software/cURL/7.56.1 ;export EBROOTCURL;EBROOTGIT=/sw/EasyBuild/software/git/2.15.0 ;export EBROOTGIT;EBROOTOPENSSL=/sw/EasyBuild/software/OpenSSL/1.0.2m ;export EBROOTOPENSSL;EBVERSIONCURL=7.56.1 ;export EBVERSIONCURL;EBVERSIONGIT=2.15.0 ;export EBVERSIONGIT;EBVERSIONOPENSSL=1.0.2m ;export EBVERSIONOPENSSL;LD_LIBRARY_PATH=/sw/EasyBuild/software/git/2.15.0/lib:/sw/EasyBuild/software/cURL/7.56.1/lib:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib:/usr/local/globus-5.2.5/lib64:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LIBRARY_PATH=/sw/EasyBuild/software/git/2.15.0/lib:/sw/EasyBuild/software/cURL/7.56.1/lib:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib ;export LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:cce/8.4.6:craype-network-gemini:craype/2.5.8:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-cray/5.2.82:cray-mpich/7.5.0:craype-interlagos:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:OpenSSL/1.0.2m:cURL/7.56.1:git/2.15.0 ;export LOADEDMODULES;MANPATH=/sw/EasyBuild/software/git/2.15.0/share/man:/sw/EasyBuild/software/cURL/7.56.1/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t7/share/man/:/opt/torque/6.0.4/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/atp/2.0.4/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.11.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.8/man:/opt/cray/cce/8.4.6/man:/opt/cray/cce/8.4.6/craylibs/man:/opt/cray/cce/8.4.6/CC/man:/opt/cray/cce/8.4.6/cftn/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t7/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/sw/EasyBuild/software/git/2.15.0/bin:/sw/EasyBuild/software/cURL/7.56.1/bin:/sw/EasyBuild/software/OpenSSL/1.0.2m/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/cce/8.4.6/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.4.6/craylibs/x86-64/bin:/opt/cray/cce/8.4.6/cftn/bin:/opt/cray/cce/8.4.6/CC/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PKG_CONFIG_PATH=/sw/EasyBuild/software/cURL/7.56.1/lib/pkgconfig:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib/pkgconfig:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/pkgconfig:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64/pkgconfig:/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64/pkgconfig:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64/pkgconfig:/opt/cray/craype/2.5.8/pkg-config:/opt/cray/iobuf/2.0.7/lib/pkgconfig:/opt/cray/atp/2.0.4/lib/pkgconfig ;export PKG_CONFIG_PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/cce/8.4.6:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/OpenSSL/1.0.2m:/sw/EasyBuild/modules/all/cURL/7.56.1:/sw/EasyBuild/modules/all/git/2.15.0 ;export _LMFILES_;
build_vpic_407
ideck_bld_template
README
runs/
runs/4_nodes/
runs/4_nodes/build_input_deck
runs/4_nodes/bw.pbs
runs/4_nodes/.bw.pbs.old
runs/4_nodes/test_4n.cxx
runs/144_nodes/
runs/144_nodes/build_input_deck
runs/144_nodes/bw.pbs
runs/144_nodes/.bw.pbs.old
runs/144_nodes/test_144n.cxx
spp_changes_patch.tar.gz
connected.
OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Unable to establish SSL connection.
mv: cannot stat `v407': No such file or directory
unzip:  cannot find or open v407.zip, v407.zip.zip or v407.zip.ZIP.
rm: cannot remove `v407.zip': No such file or directory
./build_vpic_407: line 12: cd: vpic-407: No such file or directory
tar (child): ../spp_changes_patch.tar.gz: Cannot open: No such file or directory
tar (child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error is not recoverable: exiting now
imake: No such file or directory
imake: No description file.
  Stop.
gmake: *** No rule to make target `clean'.  Stop.
gmake: *** No rule to make target `all'.  Stop.
cat: ideck_bld_template: No such file or directory
cd runs/4_nodes
./build_input_deck test_4n.cxx
bash: line 11: ./build_input_deck: No such file or directory

MYJOBID=`qsub bw.pbs`
qsub bw.pbs
INFO: Job submitted to account: jnc
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
MYJOBID=8247927.bw
=== RUNNING /u/staff/arnoldg/ior/wait_for.sh ===
Tue Feb 27 08:35:42 CST 2018: waiting for 8247927.bw to finish
Build was aborted
Aborted by arnoldg
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp/vpic.simtime
Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp/vpic.realtime
Finished: ABORTED