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Started by user arnoldg Building on master in workspace /var/lib/jenkins/workspace/LAMMPS Updating https://github.com/kc9qey/SWTools-BWCI/trunk/lammps@HEAD at revision HEAD At revision 24 No changes for https://github.com/kc9qey/SWTools-BWCI/trunk/lammps since the previous build [LAMMPS] $ /bin/sh -xe /tmp/jenkins6398237846677172594.sh + /usr/local/bin/jenkins_sync /var/lib/jenkins/workspace/LAMMPS/lammps NCSA JYC System Access status: User Access UnRestricted. Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM executing script: PATH="/sw/tools/bin:/sw/tools/bin:$PATH" SW_CONFIG="/scratch/system/bwjenkins/sw_config" PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH" SW_ROOT="/scratch/system/bwjenkins/tests" echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null export SW_CONFIG=$SW_CONFIG env cd /tmp git clone https://github.com/kc9qey/SWTools-BWCI cd SWTools-BWCI cp -R lammps $SW_ROOT cd /tmp rm -rf SWTools-BWCI cd $SW_ROOT cd lammps/15May15/cle5.2_gnu4.9.3 swbuildwait PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL PGI CRAY_BINUTILS_BIN=/opt/cray/cce/8.7.7/binutils/x86_64/bin KSH_AUTOLOAD=1 MODULE_VERSION_STACK=3.2.10.5 LESSKEY=/etc/lesskey.bin PE_MPICH_GENCOMPILERS_PGI=15.3 PE_CXX_PKGCONFIG_LIBS=mpichcxx PE_PETSC_DEFAULT_GENCOMPS_CRAY_skylake=86 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6 PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda NNTPSERVER=news INFODIR=/usr/local/info:/usr/share/info:/usr/info MANPATH=/sw/EasyBuild/software/gnuplot/5.0.5/share/man:/sw/EasyBuild/software/wget/1.19.4/share/man:/sw/EasyBuild/software/cURL/7.59.0/share/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-6.0/man:/opt/cray/mpt/7.7.4/gni/man/mpich:/opt/torque/6.1.2/share/man:/opt/moab/9.1.2.h2/share/man/:/opt/cray/atp/2.1.0/man:/opt/cray/pmi/5.0.11/man:/opt/cray/libsci/18.12.1/man:/opt/cray/man/csmlversion:/opt/cray/craype/2.5.16/man:/opt/cray/cce/8.7.7/man:/opt/cray/llm/default/man:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.44.1-1.0502.21728.75.3/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/modules/3.2.10.5/share/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/cray/man:/u/system/bwjenkins/man MODIMP_KEEP_MODULE_LIST_IN_ENV=no XALT_ETC_DIR=/opt/xalt/0.7.6/sles11.3/etc EBROOTGIT=/sw/EasyBuild/software/git/2.17.0 PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=1710 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_mic_knl=16.0 PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl GCC_X86_64=/opt/gcc/6.1.0/snos GCC_AARCH64=/opt/gcc-cross-aarch64/6.1.0/aarch64 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/include HOSTNAME=jyc1 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/12.12.1.1/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.8.1.4/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.4.1.1/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_ACML_DEFAULT_DIR_GNU=gfortran64 ASSEMBLER_AARCH64=/opt/cray/cce/8.7.7/binutils/cross/x86_64-aarch64/aarch64-linux-gnu/bin/as RCLOCAL_BASEOPTS=true LIBRARYMODULES=/opt/modules/3.2.10.5/init/.librarymodules:acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich2:cray-mpich-abi:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi:/etc/opt/cray/modules/site_librarymodules CRAY_SITE_LIST_DIR=/etc/opt/cray/modules XKEYSYMDB=/usr/share/X11/XKeysymDB EBDEVELOPENSSL=/sw/EasyBuild/software/OpenSSL/1.0.2m/easybuild/OpenSSL-1.0.2m-easybuild-devel PE_SMA_DEFAULT_COMPFLAG= PE_MPICH_ALTERNATE_LIBS_dpm=_dpm PE_HDF5_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_ENV=CRAY PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 CRAY_FTN_VERSION=8.7.7 CRAY_BINUTILS_ROOT=/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/../ EBDEVELGNUPLOT=/sw/EasyBuild/software/gnuplot/5.0.5/easybuild/gnuplot-5.0.5-easybuild-devel PKGCONFIG_ENABLED=1 PE_ACML_DEFAULT_TARGET_interlagos=_fma4 ASSEMBLER_X86_64=/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/bin/as HOST=jyc1 SHELL=/bin/bash XTOS_VERSION=5.2.82 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=86 LINKER_AARCH64=/opt/cray/cce/8.7.7/binutils/cross/x86_64-aarch64/aarch64-linux-gnu/bin/ld PROFILEREAD=true HISTSIZE=1000 GLOBUS_PATH=/usr/local/globus-6.0 GLOBUS_LOCATION=/usr/local/globus-6.0 PE_MPICH_DIR_PGI_DEFAULT64=64 PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=82 PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=1710 PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=160 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=82 53 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU FORTRAN_SYSTEM_MODULE_NAMES=ftn_lib_definitions CRAYPE_DIR=/opt/cray/craype/2.5.16 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.64982.7.26.gem/lib64 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64 SSH_CLIENT=141.142.192.225 58516 22 LIBRARY_PATH=/sw/EasyBuild/software/cURL/7.59.0/lib:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib XALT_DIR=/opt/xalt/0.7.6/sles11.3 ALT_LINKER=/opt/xalt/0.7.6/sles11.3/bin/ld CRAY_MPICH2_DIR=/opt/cray/mpt/7.7.4/gni/mpich-cray/8.6 PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=86 PE_PETSC_DEFAULT_GENCOMPILERS_PGI_x86_64=17.10 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1.1/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.10.0.1/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.6.5/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_ACML_DEFAULT_DIR_CRAY=gfortran64 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=81 71 51 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU MODIMP_ENABLE_DYNAMIC_PROMPT=no PE_MPICH_GENCOMPS_GNU=82 71 51 PE_PKGCONFIG_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 5.1 PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 FPATH=:/opt/modules/3.2.10.5/init/sh_funcs/no_redirect:/opt/modules/3.2.10.5/init/sh_funcs/no_redirect MORE=-sl PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/18.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda QTDIR=/usr/lib/qt3 PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.8.1.4/CRAY/8.6/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1.1/CRAY/8.3/lib/pkgconfig:/opt/cray/netcdf/4.4.1.1/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0.1/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5/1.10.0.1/CRAY/8.3/lib/pkgconfig:/opt/cray/ga/5.3.0.9/CRAY/8.6/lib/pkgconfig PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=86 PE_PETSC_DEFAULT_GENCOMPILERS_PGI_interlagos=17.10 PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp ALLINEA_QUEUE_DLL=/opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/lib/libtvmpich.so.3.0.1 PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.7.4/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig CRAY_PRGENVCRAY=loaded CRAY_BINUTILS_VERSION=/opt/cray/cce/8.7.7 CRAY_BINUTILS_ROOT_AARCH64=/opt/cray/cce/8.7.7/binutils/cross/x86_64-aarch64/aarch64-linux-gnu/../ EBROOTWGET=/sw/EasyBuild/software/wget/1.19.4 CRAY_MPICH_BASEDIR=/opt/cray/mpt/7.7.4/gni PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY GNU PE_ACML_DEFAULT_DIR_INTEL=ifort64 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_ACML_DEFAULT_TARGET_x86_64= JRE_HOME=/opt/java/jdk1.8.0_51/jre USER=bwjenkins PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos=16.0 PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PGI PE_FFTW_DEFAULT_TARGET_interlagos=interlagos LS_COLORS= LD_LIBRARY_PATH=/sw/xe/darshan/3.1.3/darshan-3.1.3/lib:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib:/usr/local/globus-6.0/lib GPT_LOCATION=/usr/local/globus-6.0 PE_MPICH_FIXED_PRGENV=INTEL PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 PE_PKGCONFIG_LIBS=darshan-runtime:mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 PGI PGI64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -lrca VAR_ACE=/var/ace PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=82 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=160 PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=160 PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=82 53 PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=82 53 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_skylake=16.0 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6 FTN_X86_64=/opt/cray/cce/8.7.7/cce/x86_64 XNLSPATH=/usr/share/X11/nls EBVERSIONCURL=7.59.0 MPICH_DIR=/opt/cray/mpt/7.7.4/gni/mpich-cray/8.6 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos=8.2 PE_PETSC_DEFAULT_GENCOMPS_INTEL_mic_knl=160 PE_PETSC_DEFAULT_GENCOMPS_GNU_mic_knl=53 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_PAPI_ACCEL_FAMILY_LIBS_@accelerator_family@ PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=86 MPICH_ABORT_ON_ERROR=1 CRAY_CXX_IPA_LIBS=/opt/cray/cce/8.7.7/cce/x86_64/lib/libcray-c++-rts.a ENV=/etc/bash.bashrc CPATH=/sw/EasyBuild/software/cURL/7.59.0/include:/sw/EasyBuild/software/OpenSSL/1.0.2m/include PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL:PE_MPICH PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/2.1.0/libApp/ HOSTTYPE=x86_64 TMOUT=86400 EBDEVELGIT=/sw/EasyBuild/software/git/2.17.0/easybuild/git-2.17.0-easybuild-devel RCLOCAL_PRGENV=true PE_PETSC_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.3 PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=82 PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_PRODUCT_LIST=CRAYPE_INTERLAGOS:CRAY_RCA:CRAY_PMI:CRAY_LIBSCI:CRAYPE:CRAY:CRAY_LLM:CRAY_XPMEM:CRAY_DMAPP:CRAY_UGNI:CRAY_UDREG:CRAY_ALPS FROM_HEADER= LIBPATH=/usr/local/globus-6.0/lib CRAY_MPICH_ROOTDIR=/opt/cray/mpt/7.7.4 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 5.3 PE_MPICH_DEFAULT_GENCOMPS_PGI=153 PAGER=less JAVA_PATH=/opt/java/jdk1.8.0_51 PE_MPICH_MODULE_NAME=cray-mpich PE_MPICH_GENCOMPILERS_CRAY=8.6 PE_PETSC_DEFAULT_GENCOMPS_INTEL_skylake=160 PE_PETSC_DEFAULT_GENCOMPS_GNU_skylake=82 73 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=8.1 7.1 5.1 CSHEDIT=emacs PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_TARGET_VAR_nvidia20=-lcudart PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PGI PE_LIBSCI_GENCOMPS_CRAY_x86_64=86 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 XDG_CONFIG_DIRS=/etc/xdg MODIMP_AVAILABLE_MODULES= EBDEVELWGET=/sw/EasyBuild/software/wget/1.19.4/easybuild/wget-1.19.4-easybuild-devel PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=82 51 PE_NETCDF_DEFAULT_GENCOMPS_GNU=51 49 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/16.03.1/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig PE_ACML_DEFAULT_DIR_PGI=pgi64 NLSPATH=/opt/cray/cce/8.7.7/cce/x86_64/share/nls/En/%N.cat CRAY_LIBSCI_DIR=/opt/cray/libsci/18.12.1 CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/18.12.1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/include -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include USERMODULES=/opt/modules/3.2.10.5/init/.usermodules:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich2:cray-mpich-compat:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:craypat:craype:cray-petsc:cray-petsc-complex:craypkg-gen:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:cudatoolkit:ddt:fftw:ga:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview:/etc/opt/cray/modules/site_usermodules MINICOM=-c on PE_MPICH_GENCOMPILERS_GNU=8.2 7.1 5.1 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI_ACC:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW:PE_ACML PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.10.0.1/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig MODULE_VERSION=3.2.10.5 MAIL=/var/mail/bwjenkins PATH=/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/EasyBuild/software/wget/1.19.4/bin:/sw/EasyBuild/software/git/2.17.0/bin:/sw/EasyBuild/software/cURL/7.59.0/bin:/sw/EasyBuild/software/OpenSSL/1.0.2m/bin:/sw/user/scripts:/sw/admin/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-7.5p1b/bin:/usr/local/gsi-openssh-7.5p1b/libexec:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-6.0/bin:/usr/local/globus-6.0/sbin:/opt/cray/mpt/7.7.4/gni/bin:/opt/torque/6.1.2/sbin:/opt/torque/6.1.2/bin:/opt/moab/9.1.2.h2/bin:/opt/moab/9.1.2.h2/sbin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/craype/2.5.16/bin:/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.7.7/binutils/cross/x86_64-aarch64/aarch64-linux-gnu/../bin:/opt/cray/cce/8.7.7/utils/x86_64/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0502.64982.7.26.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.44.1-1.0502.21728.75.3/sbin:/opt/cray/lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.44.1-1.0502.21728.75.3/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/bin:/opt/cray/sdb/1.1-1.0502.63652.4.27.gem/bin:/opt/cray/nodestat/2.2-1.0502.60539.1.31.gem/bin:/opt/modules/3.2.10.5/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=86 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 5.1 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=153 PE_FFTW_DEFAULT_TARGET_abudhabi=abudhabi ATP_IGNORE_SIGTERM=1 XTPE_NETWORK_TARGET=gemini CPU=x86_64 SW_CONFIG=/scratch/system/bwjenkins/sw_config PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL CRAY_PE_TARGET=x86-64 CRAY_CXX_IPA_LIBS_AARCH64=/opt/cray/cce/8.7.7/cce/aarch64/lib/libcray-c++-rts.a CRAY_CCE_SHARE=/opt/cray/cce/8.7.7/cce/x86_64/share JAVA_BINDIR=/opt/java/jdk1.8.0_51/bin PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=GNU GNU64 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64 EBROOTOPENSSL=/sw/EasyBuild/software/OpenSSL/1.0.2m PE_MPICH_VOLATILE_PRGENV=CRAY GNU PGI CRAYPE_VERSION=2.5.16 CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 INPUTRC=/u/system/bwjenkins/.inputrc PWD=/mnt/abc/u/system/bwjenkins XALT_TRANSMISSION_STYLE=directdb PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 5.3 PE_MPICH_DEFAULT_GENCOMPS_CRAY=86 PE_LIBSCI_DEFAULT_OMP_REQUIRES= INCLUDE_PATH_X86_64=/opt/cray/cce/8.7.7/cce/x86_64/include/craylibs _LMFILES_=/opt/modulefiles/modules/3.2.10.5:/opt/cray/gem/modulefiles/nodestat/2.2-1.0502.60539.1.31.gem:/opt/cray/gem/modulefiles/sdb/1.1-1.0502.63652.4.27.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/modulefiles/lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.44.1-1.0502.21728.75.3:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.9.26.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.7.26.gem:/opt/modulefiles/hss-llm/7.2.0:/opt/modulefiles/Base-opts/1.0.2-1.0502.60680.2.4.gem:/opt/modulefiles/cce/8.7.7:/opt/cray/craype/2.5.16/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.16:/opt/cray/modulefiles/cray-libsci/18.12.1:/opt/cray/gem/modulefiles/pmi/5.0.11:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.1.0:/opt/cray/modulefiles/PrgEnv-cray/5.2.82:/opt/modulefiles/moab/9.1.2.h2-sles11:/opt/modulefiles/torque/6.1.2:/opt/cray/craype/2.5.16/modulefiles/craype-interlagos:/opt/cray/modulefiles/cray-mpich/7.7.4:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/6.0:/usr/local/modulefiles/gsissh/7.5p1b:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/EasyBuild/modules/all/OpenSSL/1.0.2m:/sw/EasyBuild/modules/all/cURL/7.59.0:/sw/EasyBuild/modules/all/git/2.17.0:/sw/EasyBuild/modules/all/wget/1.19.4:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3 TARGETMODULES=/opt/modules/3.2.10.5/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon:/etc/opt/cray/modules/site_targetmodules JAVA_HOME=/opt/java/jdk1.8.0_51 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_skylake=8.6 PE_LIBSCI_MODULE_NAME=cray-libsci/18.12.1 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.7.4/gni/mpich-intel/16.0/lib/pkgconfig PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 PE_LIBSCI_GENCOMPS_PGI_x86_64=153 PE_LIBSCI_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 LANG=en_US.UTF-8 JAVA_VERSION=jdk1.8.0_51 PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.7.4/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig MOABHOMEDIR=/var/spool/moab PE_MPICH_NV_LIBS_nvidia20=-lcudart PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.6 PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig MODULEPATH=/sw/EasyBuild/modules/all:/sw/bw/modulefiles:/sw/xe/modulefiles:/usr/local/modulefiles:/opt/cray/craype/2.5.16/modulefiles:/opt/cray/gem/modulefiles:/opt/cray/modulefiles:/opt/modulefiles PYTHONSTARTUP=/etc/pythonstart SHMEM_ABORT_ON_ERROR=1 LOADEDMODULES=modules/3.2.10.5:nodestat/2.2-1.0502.60539.1.31.gem:sdb/1.1-1.0502.63652.4.27.gem:alps/5.2.4-2.0502.9774.31.12.gem:lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.44.1-1.0502.21728.75.3:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:gni-headers/4.0-1.0502.10859.9.26.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:xpmem/0.1-2.0502.64982.7.26.gem:hss-llm/7.2.0:Base-opts/1.0.2-1.0502.60680.2.4.gem:cce/8.7.7:craype-network-gemini:craype/2.5.16:cray-libsci/18.12.1:pmi/5.0.11:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.1.0:PrgEnv-cray/5.2.82:moab/9.1.2.h2-sles11:torque/6.1.2:craype-interlagos:cray-mpich/7.7.4:java/jdk1.8.0_51:globus/6.0:gsissh/7.5p1b:xalt/0.7.6.local:scripts:OpenSSL/1.0.2m:cURL/7.59.0:git/2.17.0:wget/1.19.4:user-paths:gnuplot/5.0.5:darshan/3.1.3 SDK_HOME=/usr/lib64/jvm/java PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos=82 PE_PKG_CONFIG_PATH=/opt/cray/cti/1.0.4/lib/pkgconfig:/opt/cray/cti/1.0.1/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake PE_FFTW_DEFAULT_TARGET_share=share PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge CRAY_BINUTILS_ROOT_X86_64=/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/../ CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64 MYPROXY_SERVER=tfca.ncsa.illinois.edu PE_PETSC_DEFAULT_GENCOMPILERS_GNU_skylake=8.2 7.3 PE_LIBSCI_OMP_REQUIRES_openmp=_mp CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.29.gem/include -I/opt/cray-hss-devel/7.2.0/include PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx CRAY_MPICH_DIR=/opt/cray/mpt/7.7.4/gni/mpich-cray/8.6 [email protected]:[email protected]:[email protected]:[email protected]:[email protected]:[email protected]:[email protected]:[email protected] PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64=4.9 CRAY_BINUTILS_BIN_AARCH64=/opt/cray/cce/8.7.7/binutils/cross/x86_64-aarch64/aarch64-linux-gnu/bin PE_MPICH_PKGCONFIG_LIBS=mpich CRAY_MPICH2_VER=7.7.4 PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/18.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.11/lib64 CRAY_CC_VERSION=8.7.7 EBVERSIONGNUPLOT=5.0.5 PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/18.12.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=49 PE_GA_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 5.3 EBVERSIONGIT=2.17.0 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_MPICH_TARGET_VAR_nvidia35=-lcudart PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU CRAY_LIBSCI_VERSION=18.12.1 QT_SYSTEM_DIR=/usr/share/desktop-data JDK_HOME=/usr/lib64/jvm/java SHLVL=1 HOME=/u/system/bwjenkins CURL_INCLUDES=/sw/EasyBuild/software/cURL/7.59.0/include GLOBUS_TCP_PORT_RANGE=50000,51000 PE_LIBSCI_GENCOMPILERS_PGI_x86_64=15.3 LESS_ADVANCED_PREPROCESSOR=no OSTYPE=linux EBDEVELCURL=/sw/EasyBuild/software/cURL/7.59.0/easybuild/cURL-7.59.0-easybuild-devel PE_TPSL_DEFAULT_VOLATILE_PRGENV=GNU GNU64 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.6 PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.7.4/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PE_ACML_DEFAULT_DIR_OPENMP=_mp LINKER_X86_64=/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.11/include XCURSOR_THEME=crystalwhite LS_OPTIONS=-N --color=none -T 0 DYLD_LIBRARY_PATH=/usr/local/globus-6.0/lib PE_MPICH_DIR_CRAY_DEFAULT64=64 PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.6.0.5/lib64/pkgconfig CRAYLMD_LICENSE_FILE=/opt/cray/cce/cce.lic ATP_MRNET_COMM_PATH=/opt/cray/atp/2.1.0/libexec/atp_mrnet_commnode_wrapper CRAYPE_NETWORK_TARGET=gemini CRAY_LLM_DIR=/opt/cray/llm/default PRGENVMODULES=/opt/modules/3.2.10.5/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi WINDOWMANAGER= EBROOTGNUPLOT=/sw/EasyBuild/software/gnuplot/5.0.5 EBVERSIONWGET=1.19.4 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos=8.2 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 5.3 PE_LEVEL=8.7 EBROOTCURL=/sw/EasyBuild/software/cURL/7.59.0 PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_MPICH_NV_LIBS= PE_HDF5_DEFAULT_GENCOMPS_GNU=51 49 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/18.12.1/CRAY/8.6/x86_64 CRAYLIBS_X86_64=/opt/cray/cce/8.7.7/cce/x86_64/lib CRAYLIBS_AARCH64=/opt/cray/cce/8.7.7/cce/aarch64/lib PYTHONPATH=/sw/tools/bin:/sw/tools/bin:/opt/xalt/0.7.6/sles11.3/libexec:/opt/cray/sdb/1.1-1.0502.63652.4.27.gem/lib64/py CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/4.0-1.0502.10859.9.26.gem/include G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252 LESS=-M -I MACHTYPE=x86_64-suse-linux LOGNAME=bwjenkins PE_MPICH_GENCOMPS_CRAY=86 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.6 PE_LIBSCI_OMP_REQUIRES= DMAPP_ABORT_ON_ERROR=1 CVS_RSH=ssh PE_MPICH_DEFAULT_GENCOMPS_GNU=82 71 51 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 TOOLMODULES=/opt/modules/3.2.10.5/init/.toolmodules:apprentice:apprentice2:atp:chapel:cray-lgdb:craypat:craypkg-gen:cray-snplauncher:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview:/etc/opt/cray/modules/site_toolmodules XDG_DATA_DIRS=/usr/share:/etc/opt/kde3/share:/opt/kde3/share SSH_CONNECTION=141.142.192.225 58516 141.142.175.10 22 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/18.12.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_GA_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL MODULESHOME=/opt/modules/3.2.10.5 PELOCAL_PRGENV=true PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.9.3.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig PE_MPICH_NV_LIBS_nvidia35=-lcudart CRAY_CXX_IPA_LIBS_X86_64=/opt/cray/cce/8.7.7/cce/x86_64/lib/libcray-c++-rts.a PKG_CONFIG_PATH=/sw/xe/darshan/3.1.3/darshan-3.1.3/lib/pkgconfig:/sw/EasyBuild/software/cURL/7.59.0/lib/pkgconfig:/sw/EasyBuild/software/OpenSSL/1.0.2m/lib/pkgconfig:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.11/lib64/pkgconfig:/opt/cray/craype/2.5.16/pkg-config:/opt/cray/iobuf/2.0.8/lib/pkgconfig:/opt/cray/xpmem/0.1-2.0502.64982.7.26.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64/pkgconfig:/opt/cray/gni-headers/4.0-1.0502.10859.9.26.gem/lib64/pkgconfig:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64/pkgconfig:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64/pkgconfig:/opt/cray/atp/2.1.0/lib/pkgconfig LESSOPEN=lessopen.sh %s LIBSCI_BASE_DIR=/opt/cray/libsci/18.12.1 INCLUDE_PATH_AARCH64=/opt/cray/cce/8.7.7/cce/aarch64/include/craylibs CRAY_BINUTILS_BIN_X86_64=/opt/cray/cce/8.7.7/binutils/x86_64/bin SHLIB_PATH=/usr/local/globus-6.0/lib ACLOCAL_PATH=/sw/EasyBuild/software/cURL/7.59.0/share/aclocal PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 PE_MPICH_NV_LIBS_nvidia60=-lcudart PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME LIBSCI_VERSION=18.12.1 INFOPATH=/usr/local/info:/usr/share/info:/usr/info CRAY_CPU_TARGET=interlagos PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.8.1.4/PGI/17.10/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1.1/PGI/15.3/lib/pkgconfig:/opt/cray/netcdf/4.4.1.1/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0.1/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5/1.10.0.1/PGI/15.3/lib/pkgconfig:/opt/cray/ga/5.3.0.9/PGI/17.10/lib/pkgconfig PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 PE_FFTW_DEFAULT_TARGET_broadwell=broadwell CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include PE_MPICH_GENCOMPS_PGI=153 PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= PE_MPICH_DEFAULT_GENCOMPILERS_PGI=15.3 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.64982.7.26.gem/include CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include LMOD_DIR=/opt/xalt/0.7.6/sles11.3 PE_LIBSCI_GENCOMPS_GNU_x86_64=81 71 51 PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=8.1 7.1 5.1 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 ATP_HOME=/opt/cray/atp/2.1.0 LESSCLOSE=lessclose.sh %s %s PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos=8.2 5.3 PE_PAPI_DEFAULT_ACCEL_LIBS= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.8.1.4/INTEL/18.0/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1.1/INTEL/15.0/lib/pkgconfig:/opt/cray/netcdf/4.4.1.1/INTEL/15.0/lib/pkgconfig:/opt/cray/mpt/7.7.4/gni/mpich-intel/16.0/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0.1/INTEL/15.0/lib/pkgconfig:/opt/cray/hdf5/1.10.0.1/INTEL/15.0/lib/pkgconfig:/opt/cray/ga/5.3.0.9/INTEL/18.0/lib/pkgconfig PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.3.0.9/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_GA_DEFAULT_GENCOMPS_GNU=82 73 53 PE_FFTW_DEFAULT_TARGET_haswell=haswell CRAYOS_VERSION=5.2.82 CC_X86_64=/opt/cray/cce/8.7.7/cce/x86_64 CRAY_LD_LIBRARY_PATH=/opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/pmi/5.0.11/lib64:/opt/cray/libsci/18.12.1/CRAY/8.6/x86_64/lib:/opt/cray/cce/8.7.7/cce/x86_64/lib:/opt/cray/xpmem/0.1-2.0502.64982.7.26.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 G_BROKEN_FILENAMES=1 DARSHAN_LOGPATH=/projects/system/darshan/ EBVERSIONOPENSSL=1.0.2m PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=82 53 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=86 PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 JAVA_ROOT=/opt/java/jdk1.8.0_51 COLORTERM=1 BASH_FUNC_modimp_tabcomplete_off()=() { export MODIMP_AVAILABLE_MODULES=""; complete -r module; rm -f /tmp/.modimp_available_${USER}_* } BASH_FUNC_modimp_module_to_stdout_on()=() { if [ -f $HOME/.no_modimp ]; then return; fi; if [ -f $HOME/.no_modimp_warning ]; then echo "The file $HOME/.no_modimp_warning exists; modimp commands will not load."; return; fi; function moduleraw () { eval `${MODULESHOME}/bin/modulecmd bash $*` }; function module () { if [[ $1 == "purge" ]]; then echo ""; echo "BEWARE: Running \"module purge\" puts your environment in an unreliable state."; echo "Doing so makes it difficult to debug problems or for support staff to help"; echo "you. Please structure your build so that you don't have to do this."; echo ""; fi; if [[ $1 == "PrgEnvLoad" ]]; then PRGMOD=`echo $LOADEDMODULES | tr ":" "\n" | grep PrgEnv`; if [[ $PRGMOD == "" ]]; then moduleraw load $2 $3 $4 $5 $6 2>&1; return; fi; moduleraw swap $PRGMOD $2 $3 $4 $5 $6 2>&1; return; fi; moduleraw $* 2>&1 }; export -f moduleraw; export -f module } BASH_FUNC_moduleraw()=() { eval `${MODULESHOME}/bin/modulecmd bash $*` } BASH_FUNC_autocomplete_modules()=() { subcommands_list="load:add:show:display:available:unload:rm:list:swap:switch:use:unuse:PrgEnvLoad"; read -a command_line_array <<< "$COMP_LINE"; num_command_line_elements=${#command_line_array[@]}; if [[ $num_command_line_elements -eq 1 ]]; then echo "load"; echo "add"; echo "show"; echo "display"; echo "available"; echo "unload"; echo "rm"; echo "list"; echo "swap"; echo "switch"; echo "use"; echo "unuse"; echo "PrgEnvLoad"; exit; fi; module_sub_command=${command_line_array[1]}; being_completed=$2; being_completed_length=${#being_completed}; loaded_modules_array=$(echo $LOADEDMODULES | tr ":" "\n"); if [ $MODIMP_KEEP_MODULE_LIST_IN_ENV != "yes" ]; then dated_modulefile_name="/tmp/.modimp_available_${USER}_`date +%Y_%m_%d`"; if [ ! -f ${dated_modulefile_name} ]; then autocomplete_modules_setup; fi; read -r MODIMP_AVAILABLE_MODULES < ${dated_modulefile_name}; fi; available_modules_array=$(echo $MODIMP_AVAILABLE_MODULES | tr ":" "\n"); case "$module_sub_command" in load | add | show | display | available | avail) possible_completions_array=("${available_modules_array[@]}") ;; unload | rm | list) possible_completions_array=("${loaded_modules_arraCloning into 'SWTools-BWCI'... y[@]}") ;; PrgEnvLoad) PrgEnv_array=$(echo $MODIMP_AVAILABLE_MODULES | tr ":" "\n" | grep PrgEnv); possible_completions_array=("${PrgEnv_array[@]}") ;; swap | switch) case "$num_command_line_elements" in 2) possible_completions_array=("${loaded_modules_array[@]}") ;; 4) possible_completions_array=("${available_modules_array[@]}") ;; 3) if [[ $being_completed_length -eq 0 ]]; then initial_completions_array=("${available_modules_array[@]}"); raw_module_to_be_swapped=${command_line_array[2]}; position_of_slash=$(echo $raw_module_to_be_swapped | grep -b -o "/" | awk 'BEGIN {FS=":"}{print $1}'); second_completions_array=""; if [[ $position_of_slash -gt 0 ]]; then base_module_length=$position_of_slash; else base_module_length=${#raw_module_to_be_swapped}; fi; module_name_prefix=${raw_module_to_be_swapped:0:6}; if [[ $module_name_prefix == "PrgEnv" ]]; then base_module_length=6; fi; base_module_to_be_swapped=${raw_module_to_be_swapped:0:base_module_length}; version_length=${#raw_module_to_be_swapped}-position_of_slash-1; for comp in $initial_completions_array; do match_string=${comp:0:base_module_length}; if [ $match_string == $base_module_to_be_swapped ]; then second_completions_array+=$comp; second_completions_array+=":"; fi; done; possible_completions_array=$(echo $second_completions_array | tr ":" "\n"); else possible_completions_array=("${loaded_modules_array[@]}"); fi ;; esac ;; use | unuse) dir_completions=(`ls -1 -d -p ${being_completed}* 2>/dev/null`); num_possible=${#dir_completions[@]}; blah="\t"; if (( num_possible == 1 )); then echo ${dir_completions[0]}; echo ${dir_completions[0]}$blah; else for item in "${dir_completions[@]}"; do echo $item; done; fi; return ;; *) if [[ $3 == "module" ]]; then possible_completions_array=$(echo $subcommands_list | tr ":" "\n"); fi ;; esac; if [[ $being_completed_length -eq 0 ]]; then for x in $possible_completions_array; do echo "$x"; done; else for x in $possible_completions_array; do match_string=${x:0:being_completed_length}; if [ $match_string == $being_completed ]; then echo "$x"; fi; cray_prepended_length=$(($being_completed_length+5)); cray_prepended_match_string=${x:0:cray_prepended_length}; cray_prepended_being_completed="cray-"; cray_prepended_being_completed+=$being_completed; if [ $cray_prepended_match_string == $cray_prepended_being_completed ]; then echo "$x"; fi; craype_prepended_length=$(($being_completed_length+7)); craype_prepended_match_string=${x:0:craype_prepended_length}; craype_prepended_being_completed="craype-"; craype_prepended_being_completed+=$being_completed; if [ $craype_prepended_match_string == $craype_prepended_being_completed ]; then echo "$x"; fi; xt_prepended_length=$(($being_completed_length+3)); xt_prepended_match_string=${x:0:xt_prepended_length}; xt_prepended_being_completed="xt-"; xt_prepended_being_completed+=$being_completed; if [[ $xt_prepended_match_string == $xt_prepended_being_completed ]]; then echo "$x"; fi; done; fi } BASH_FUNC_modimp_show_all_if_ambiguous_on()=() { if [ -f $HOME/.no_modimp ]; then return; fi; if [ -f $HOME/.no_modimp_warning ]; then echo "The file $HOME/.no_modimp_warning exists; modimp commands will not load."; return; fi; bind 'set show-all-if-ambiguous on' } BASH_FUNC_modimp_tabcomplete_on()=() { if [ -f $HOME/.no_modimp ]; then return; fi; if [ -f $HOME/.no_modimp_warning ]; then echo "The file $HOME/.no_modimp_warning exists; modimp commands will not load."; return; fi; autocomplete_modules_setup; complete -C autocomplete_modules module } BASH_FUNC_module()=() { if [[ $1 == "purge" ]]; then echo ""; echo "BEWARE: Running \"module purge\" puts your environment in an unreliable state."; echo "Doing so makes it difficult to debug problems or for support staff to help"; echo "you. Please structure your build so that you don't have to do this."; echo ""; fi; if [[ $1 == "PrgEnvLoad" ]]; then PRGMOD=`echo $LOADEDMODULES | tr ":" "\n" | grep PrgEnv`; if [[ $PRGMOD == "" ]]; then moduleraw load $2 $3 $4 $5 $6 2>&1; return; fi; moduleraw swap $PRGMOD $2 $3 $4 $5 $6 2>&1; return; fi; moduleraw $* 2>&1 } BASH_FUNC_autocomplete_modules_setup()=() { if [ $MODIMP_KEEP_MODULE_LIST_IN_ENV != "yes" ]; then dated_modulefile_name="/tmp/.modimp_available_${USER}_`date +%Y_%m_%d`"; if [ ! -e ${dated_modulefile_name} ]; then rm -f /tmp/.modimp_available_${USER}_*; fi; fi; MODIMP_AVAILABLE_MODULES=""; mod_dir_list=$(echo $MODULEPATH | tr ":" "\n"); for moddir in $mod_dir_list; do directory_name_length=${#moddir}; file_list=$(find $moddir 2> /dev/null); for filename in $file_list; do modname_position=$(($directory_name_length+1)); modname_and_version_length=$((${#filename}-$modname_position)); modulename_and_version=${filename:$modname_position:$modname_and_version_length}; modname_leading_character=${modulename_and_version:0:1}; if [[ $modname_leading_character == "." ]]; then continue; fi; if [[ $modulename_and_version =~ \/\. ]]; then continue; fi; MODIMP_AVAILABLE_MODULES+=$modulename_and_version; MODIMP_AVAILABLE_MODULES+=":"; done; done; if [ $MODIMP_KEEP_MODULE_LIST_IN_ENV != "yes" ]; then echo $MODIMP_AVAILABLE_MODULES > ${dated_modulefile_name}; export MODIMP_AVAILABLE_MODULES=""; else export MODIMP_AVAILABLE_MODULES; fi } BASH_FUNC_modimp_show_all_if_ambiguous_off()=() { bind 'set show-all-if-ambiguous off' } BASH_FUNC_modimp_module_to_stdout_off()=() { function module () { if [[ $1 == "purge" ]]; then echo ""; echo "BEWARE: Running \"module purge\" puts your environment in an unreliable state."; echo "Doing so makes it difficult to debug problems or for support staff to help"; echo "you. Please structure your build so that you don't have to do this."; echo ""; fi; eval `${MODULESHOME}/bin/modulecmd bash $*` }; export -f module } BASH_FUNC_modimp_resync()=() { rm -f /dev/shm/.modimp_available_${USER}_*; autocomplete_modules_setup } _=/usr/bin/env swbuild -s -a lammps -v 15May15 -b cle5.2_gnu4.9.3 # clear out old installation to prevent potential libtool chmod # commands from failing when reinstalled by another person rm -rf bin lib include doc share man etc libexec info #clear out status file since re-making rm -f status rm -rf $SRCDIR tar -xf /sw/sources/${PACKAGE}/${VERSION}/${PACKAGE}_stable.tar.gz cd $SRCDIR cd src/MAKE cat > Makefile.xe6 << EOF SHELL = /bin/sh .SUFFIXES: .cpp .d CC = CC CCFLAGS = -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 SHFLAGS = -fPIC DEPFLAGS = -M LINK = CC LINKFLAGS = -O LIB = -lquadmath SIZE = size ARCHIVE = ar ARFLAGS = -rc SHLIBFLAGS = -shared LMP_INC = -DLAMMPS_GZIP MPI_INC = -DMPICH_SKIP_MPICXX MPI_PATH = MPI_LIB = FFT_INC = -DFFT_FFTW3 FFT_PATH = FFT_LIB = JPG_INC = JPG_PATH = JPG_LIB = EOF tail -n 46 Makefile.mpi >> Makefile.xe6 cd .. # Adding all packages make yes-all make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package asphere make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package body make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package class2 make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package colloid make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package coreshell make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package dipole make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package fld make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package gpu make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package granular make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package kim make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package kokkos make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package kspace updating package CORESHELL updating package GPU updating package KOKKOS make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package manybody updating package GPU updating package KOKKOS make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package mc make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package meam make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package misc make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package molecule updating package GPU updating package KOKKOS make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package mpiio make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package opt make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package peri make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package poems make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package python make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package qeq make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package reax make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package replica make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package rigid make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package shock make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package snap make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package srd make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package voronoi make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package xtc make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package user-atc make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package user-awpmd make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package user-cg-cmm updating package GPU updating src/pair_lj_sdk_coul_long_gpu.cpp updating src/pair_lj_sdk_coul_long_gpu.h updating src/pair_lj_sdk_gpu.cpp updating src/pair_lj_sdk_gpu.h updating package KOKKOS updating src/pair_lj_sdk_kokkos.cpp updating src/pair_lj_sdk_kokkos.h make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Installing package user-colvars make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu4.9.3/lammps-15May15/src' Build was aborted Aborted by arnoldg Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/LAMMPS/cputime Saving plot series data from: /var/lib/jenkins/workspace/LAMMPS/memory Finished: ABORTED