Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/MILC-h2ologin4/workspace
Updating <a href='https://github.com/reubendb/SWTools-BWCI/trunk/milc-nsf@HEAD'>https://github.com/reubendb/SWTools-BWCI/trunk/milc-nsf@HEAD</a> at revision HEAD
At revision 22

No changes for <a href='https://github.com/reubendb/SWTools-BWCI/trunk/milc-nsf'>https://github.com/reubendb/SWTools-BWCI/trunk/milc-nsf</a> since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins1123046774121826165.sh
+ rsync -az --delete -e ssh /var/lib/jenkins/jobs/MILC-h2ologin4/workspace/milc-nsf BW_REMOTE:/scratch/system/bwjenkins/tests/
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"

echo $PATH $SW_CONFIG $PYTHONPATH &gt; /dev/null
export SW_CONFIG=$SW_CONFIG

cd $SW_ROOT
cd milc-nsf/v1/cle5.2_gnu4.9.3
# use remodule that uses fixes issue with using gcc/4.9.3
cp /u/system/bwjenkins/remodule.milc-nsf remodule
swbuildwait


[SSH] executing...
swbuild -s -a milc-nsf -v v1 -b cle5.2_gnu4.9.3
# clear out old installation to prevent potential libtool chmod 
# commands from failing when reinstalled by another person
rm -rf bin lib include status test.log $SRCDIR


#clear out status file since re-making
rm -f status

tar xf /sw/sources/$PACKAGE/$VERSION/$SRCDIR.tar.gz
tar: milc-nsf/src/milc-nsf/ks_imp_dyn2/.lastmake.Make_mpi.su3_rmd: implausibly old time stamp 1969-12-31 17:59:59
cd $SRCDIR/src/milc-nsf/ks_imp_dyn2

# Make clean
make -f Make_mpi clean
/bin/rm -f *.o
touch ../libraries/Make_vanilla

#Make
make -f Make_mpi su3_rmd

make -f Make_mpi target "MYTARGET= su3_rmd" \
	"DEFINES= -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS" \
	"GAUGE = symanzik_1loop_action.h" \
	"QUARK = asqtad_action.h" \
	"EXTRA_OBJECTS= dslash_fn2.o d_congrad5_fn.o"
make[1]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/ks_imp_dyn2'
Building libraries with Make_vanilla
cd ../libraries ;\
	make -f Make_vanilla   "APP_CC=cc   " all
make[2]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/libraries'
================================================================
PLEASE CHECK COMPILERS: Libraries: cc . Application: cc
================================================================
/bin/rm -f .lastmake.*
make -f Make_vanilla clean
make[3]: Entering directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/libraries'
/bin/rm -f *.o
make[3]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/libraries'
touch .lastmake.Make_vanilla
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cadd.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cdiv.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  ce_itheta.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cexp.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  clog.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cmplx.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cmul.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  conjg.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  csqrt.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  csub.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcadd.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcdiv.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dce_itheta.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcexp.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dclog.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcmplx.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcmul.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dconjg.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcsqrt.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dcsub.c
ar rcs complex.a cadd.o cdiv.o ce_itheta.o cexp.o clog.o cmplx.o cmul.o conjg.o csqrt.o csub.o dcadd.o dcdiv.o dce_itheta.o dcexp.o dclog.o dcmplx.o dcmul.o dconjg.o dcsqrt.o dcsub.o 
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  addmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  addvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cmp_ahmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_a_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_a_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_s_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  det_su3.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  clear_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dumpmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dumpvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  clearvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amatvec_s.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amatvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amatvec_ns.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mat_an.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mat_na.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mat_nn.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_matvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_matvec_ns.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_matvec_s.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  make_ahmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  rand_ahmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  realtr.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  complextr.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_a_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_a_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_s_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_s_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_sum_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_s_mat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3_adjoint.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3_dot.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3_rdot.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3_proj.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3mat_copy.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3vec_copy.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  submat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  subvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  trace_su3.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  uncmp_ahmat.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  msq_su3vec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  sub4vecs.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amv_4dir.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amv_4vec.c
m_amv_4vec.c: In function 'mult_adj_su3_mat_4vec':
m_amv_4vec.c:45:24: warning: iteration 3u invokes undefined behavior [-Waggressive-loop-optimizations]
   for(n=0;n&lt;4;n++,a++,c=cc[n]){
                        ^
m_amv_4vec.c:45:3: note: containing loop
   for(n=0;n&lt;4;n++,a++,c=cc[n]){
   ^
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mv_s_4dir.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  flush_to_zero.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  l_su2_hit_n.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  r_su2_hit_a.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dumpsu2.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_su2_mat_vec_n.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_su2_mat_vec_a.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  gaussrand.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  byterevn.c
cc     -g -ffast-math -funroll-loops -c prefetch.c
ar rcs su3.a addmat.o addvec.o cmp_ahmat.o cs_m_a_vec.o cs_m_a_mat.o cs_m_s_vec.o cs_m_vec.o det_su3.o clear_mat.o dumpmat.o dumpvec.o clearvec.o m_amatvec_s.o m_amatvec.o m_amatvec_ns.o m_mat_an.o m_mat_na.o m_mat_nn.o m_matvec.o m_matvec_ns.o m_matvec_s.o make_ahmat.o rand_ahmat.o realtr.o complextr.o s_m_a_mat.o s_m_a_vec.o s_m_s_mat.o s_m_s_vec.o s_m_sum_vec.o s_m_vec.o s_m_mat.o cs_m_mat.o cs_m_s_mat.o su3_adjoint.o su3_dot.o su3_rdot.o su3_proj.o su3mat_copy.o su3vec_copy.o submat.o subvec.o trace_su3.o uncmp_ahmat.o msq_su3vec.o sub4vecs.o m_amv_4dir.o m_amv_4vec.o m_mv_s_4dir.o flush_to_zero.o l_su2_hit_n.o r_su2_hit_a.o dumpsu2.o m_su2_mat_vec_n.o m_su2_mat_vec_a.o gaussrand.o byterevn.o prefetch.o
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wp_shrink.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wp_grow.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wp_grow_a.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  dump_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  clear_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  su3_proj_w.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  copy_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  add_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  sub_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_hwvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  msq_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wvec_dot.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wvec2_dot.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wvec_rdot.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_a_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  s_m_atm_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  mb_gamma.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  mb_gamma_l.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  mb_gamma_r.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  mswvb_gamma_l.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  mswvb_gamma_r.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_a_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  cs_m_a_wvec2.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mat_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_mat_hwvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amat_wvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  m_amat_hwvec.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  grow4wvecs.c
cc     -c -O3 -g  -ffast-math -funroll-loops -DFAST  wp_shrink4.c
ar rcs su3.a wp_shrink.o wp_grow.o wp_grow_a.o dump_wvec.o clear_wvec.o su3_proj_w.o copy_wvec.o add_wvec.o sub_wvec.o s_m_wvec.o s_m_hwvec.o msq_wvec.o wvec_dot.o wvec2_dot.o wvec_rdot.o s_m_a_wvec.o s_m_atm_wvec.o mb_gamma.o mb_gamma_l.o mb_gamma_r.o mswvb_gamma_l.o mswvb_gamma_r.o cs_m_wvec.o cs_m_a_wvec.o cs_m_a_wvec2.o m_mat_wvec.o m_mat_hwvec.o m_amat_wvec.o m_amat_hwvec.o grow4wvecs.o wp_shrink4.o
make[2]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/libraries'
make[1]: .lastmake.Make_mpi.su3_rmd: Timestamp out of range; substituting 1969-12-31 18:00:00
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  control.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/f_meas.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  gauge_info.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  setup.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  update.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  update_h.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  update_u.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/layout_hyper_tstretch.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/check_unitarity.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/d_plaq4.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/gaugefix2.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/gauge_stuff.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/io_helpers.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/io_lat4.c 
../generic/io_lat4.c: In function 'qcdhdr_get_hdr':
../generic/io_lat4.c:188:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     len = (int) q - (int) line;
           ^
../generic/io_lat4.c:188:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     len = (int) q - (int) line;
                     ^
../generic/io_lat4.c: In function 'read_gauge_hdr':
../generic/io_lat4.c:1316:37: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
        (char *)GAUGE_VERSION_NUMBER,(char *)tmp);
                                     ^
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/make_lattice.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/path_product.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/ploop3.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/ranmom.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/ranstuff.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/reunitarize2.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/grsource_imp.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/mat_invert.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/quark_stuff4.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/rephase.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/dslash_fn2.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic_ks/d_congrad5_fn.c
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/com_mpi.c 
cc    -c -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS  ../generic/io_ansi.c 
cc    -O3 -g   -O3 -g   -ffast-math -funroll-loops                 -DMPI -DINLINE -DNOPREFETCH -DCGTIME -DFFTIME -DLLTIME -DGFTIME -DMYNODE_INLINE    -I. -DFN -DCONGRAD_TMP_VECTORS -DDSLASH_TMP_LINKS      -o su3_rmd \
	control.o f_meas.o gauge_info.o setup.o update.o update_h.o update_u.o layout_hyper_tstretch.o check_unitarity.o d_plaq4.o gaugefix2.o gauge_stuff.o io_helpers.o io_lat4.o make_lattice.o path_product.o ploop3.o ranmom.o ranstuff.o reunitarize2.o grsource_imp.o mat_invert.o quark_stuff4.o rephase.o dslash_fn2.o d_congrad5_fn.o com_mpi.o io_ansi.o  ../libraries/su3.a ../libraries/complex.a   -lm
touch localmake
make[1]: Leaving directory `/mnt/c/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/milc-nsf/src/milc-nsf/ks_imp_dyn2'
if [[ ! -e su3_rmd ]] ; then
    echo "make failed"
    exit 1
fi

mkdir -p $SW_BLDDIR/bin
cp su3_rmd $SW_BLDDIR/bin

cd $SW_BLDDIR

############################### if this far, return 0
exit 0
['/scratch/system/bwjenkins/tests/milc-nsf/v1']
/scratch/system/bwjenkins/tests/milc-nsf/v1/cle5.2_gnu4.9.3/rebuild : passed (0)

[SSH] completed
[SSH] exit-status: 0

[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"

echo $PATH $SW_CONFIG $PYTHONPATH SW_WORKDIR &gt; /dev/null
export SW_CONFIG=$SW_CONFIG
export SW_WORKDIR=$SW_WORKDIR

cd $SW_ROOT
cd milc-nsf/v1/cle5.2_gnu4.9.3
# use remodule that uses fixes issue with using gcc/4.9.3
cp /u/system/bwjenkins/remodule.milc-nsf remodule
swtestwait


[SSH] executing...
Job 12498853.bw
u0 0.8441 is missing or was deleted
Failing this test 

[SSH] completed
[SSH] exit-status: 254

Build step 'Execute shell script on remote host using ssh' marked build as failure
Recording plot data
Saving plot series data from: /var/lib/jenkins/jobs/MILC-h2ologin4/workspace/wallclock
Finished: FAILURE