Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/NAMD/workspace
Checking out a fresh workspace because /var/lib/jenkins/jobs/NAMD/workspace/namd doesn't exist
Cleaning local Directory namd
Checking out https://github.com/kc9qey/SWTools-BWCI/trunk/namd at revision HEAD
A .check4newver
A .exceptions
A 2.10
A 2.10/cle5.2_gnu5.1.0
A 2.10/cle5.2_gnu5.1.0/.owners
A 2.10/cle5.2_gnu5.1.0/build-notes
AU 2.10/cle5.2_gnu5.1.0/rebuild
AU 2.10/cle5.2_gnu5.1.0/relink
A 2.10/cle5.2_gnu5.1.0/remodule
AU 2.10/cle5.2_gnu5.1.0/retest
AU 2.10/cle5.2_gnu5.1.0/status
A 2.10/cle5.2_intel15.0.2
A 2.10/cle5.2_intel15.0.2/.owners
A 2.10/cle5.2_intel15.0.2/build-notes
AU 2.10/cle5.2_intel15.0.2/rebuild
AU 2.10/cle5.2_intel15.0.2/relink
A 2.10/cle5.2_intel15.0.2/remodule
AU 2.10/cle5.2_intel15.0.2/retest
AU 2.10/cle5.2_intel15.0.2/status
A description
A support
A versions
At revision 24
No changes for https://github.com/kc9qey/SWTools-BWCI/trunk/namd since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins14165805142863066271.sh
+ /usr/local/bin/jenkins_sync /var/lib/jenkins/jobs/NAMD/workspace/namd
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null
export SW_CONFIG=$SW_CONFIG
cd $SW_ROOT
echo SW_ROOT=$SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swbuildwait
[SSH] executing...
SW_ROOT=/scratch/system/bwjenkins/tests
swbuild -s -a namd -v 2.10 -b cle5.2_gnu5.1.0
# clear out old installation to prevent potential libtool chmod
# commands from failing when reinstalled by another person
rm -rf bin lib include man
rm -rf tcl* $NAMD_SRCDIR
#clear out status file since re-making
rm -f status
#-- Build TCL first since NAMD depends on TCL. Do not use other TCL version
tar -xzf /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-src.tar.gz
cd tcl*/unix
#-- Apply patch for TCL to work on Cray XE
patch -p0 < /sw/sources/namd/${NAMD_VER}/tcl${TCL_VER}-crayxe-tclUnixInit.patch
patching file tclUnixInit.c
./configure CC=gcc --prefix=$SW_BLDDIR --disable-shared
checking whether to use symlinks for manpages... no
checking whether to compress the manpages... no
checking whether to add a package name suffix for the manpages... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dirent.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/wait.h usability... yes
checking sys/wait.h presence... yes
checking for sys/wait.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking if the compiler understands -pipe... yes
checking for building with threads... no (default)
checking for sin... no
checking for main in -lieee... yes
checking for main in -linet... no
checking net/errno.h usability... no
checking net/errno.h presence... no
checking for net/errno.h... no
checking for connect... yes
checking for gethostbyname... yes
checking how to build libraries... static
checking for ranlib... ranlib
checking if 64bit support is requested... no
checking if 64bit Sparc VIS support is requested... no
checking if compiler supports visibility "hidden"... yes
checking if rpath support is requested... yes
checking system version... Linux-3.0.101-0.46.1_1.0502.8871-cray_gem_s
checking for dlopen in -ldl... yes
checking for ar... ar
checking for build with symbols... no
checking for required early compiler flags... _LARGEFILE64_SOURCE
checking for 64-bit integer type... using long
checking whether byte ordering is bigendian... no
checking for getcwd... yes
checking for opendir... yes
checking for strtol... yes
checking for waitpid... yes
checking for strerror... yes
checking for getwd... yes
checking for wait3... yes
checking for uname... yes
checking for realpath... yes
checking for getaddrinfo... yes
checking for working getaddrinfo... yes
checking sys/modem.h usability... no
checking sys/modem.h presence... no
checking for sys/modem.h... no
checking termios vs. termio vs. sgtty... termios
checking for fd_set in sys/types... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for gmtime_r... yes
checking for localtime_r... yes
checking for mktime... yes
checking tm_tzadj in struct tm... no
checking tm_gmtoff in struct tm... yes
checking long timezone variable... yes
checking for struct stat.st_blocks... yes
checking for struct stat.st_blksize... yes
checking for blkcnt_t... yes
checking for fstatfs... yes
checking for working memcmp... yes
checking for memmove... yes
checking for strstr... yes
checking proper strstr implementation... ok
checking for strtoul... yes
checking proper strtoul implementation... ok
checking for strtod... yes
checking proper strtod implementation... ok
checking for strtod... (cached) yes
checking for Solaris2.4/Tru64 strtod bugs... ok
checking for mode_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for uid_t in sys/types.h... yes
checking for socklen_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking for opendir... (cached) yes
checking union wait... yes
checking for strncasecmp... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for gettimeofday declaration... present
checking whether char is unsigned... no
checking signed char declarations... yes
checking for a putenv() that copies the buffer... no
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking whether to use nl_langinfo... yes
checking for chflags... no
checking isnan... yes
checking for fts... no
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/filio.h usability... no
checking sys/filio.h presence... no
checking for sys/filio.h... no
checking system version... (cached) Linux-3.0.101-0.46.1_1.0502.8871-cray_gem_s
checking FIONBIO vs. O_NONBLOCK for nonblocking I/O... O_NONBLOCK
checking whether to use dll unloading... yes
checking for timezone data... /usr/share/zoneinfo
checking whether to enable DTrace support... no
checking if the C stack grows upwards in memory... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating dltest/Makefile
config.status: creating tclConfig.sh
make
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regcomp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regexec.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regfree.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/regerror.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DUSE_TCLALLOC=0 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclAsync.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c: In function 'TclEvalObjvInternal':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3659:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBasic.c:3751:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclBinary.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCkalloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclClock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdAH.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdIL.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCmdMZ.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompCmds.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompExpr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclCompile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDate.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclDictObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEncoding.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEnv.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclExecute.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclFileName.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclGet.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHash.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclHistory.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIndexObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclInterp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIO.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIORChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOGT.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclIOUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclListObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLiteral.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclLoad.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclMain.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNamesp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclNotify.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPanic.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclParse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPathObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 \
-DCFG_INSTALL_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_INSTALL_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_INSTALL_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_INSTALL_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_INSTALL_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
-DCFG_RUNTIME_LIBDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib\"" \
-DCFG_RUNTIME_BINDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin\"" \
-DCFG_RUNTIME_SCRDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\"" \
-DCFG_RUNTIME_INCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include\"" \
-DCFG_RUNTIME_DOCDIR="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man\"" \
\
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPkgConfig.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPosixStr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclPreserve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c: In function 'TclObjInterpProcCore':
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1718:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
char *a[10];
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1753:10: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int l;
^
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclProc.c:1831:11: warning: variable 'r' set but not used [-Wunused-but-set-variable]
Tcl_Obj *r;
^
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclRegexp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResolve.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclResult.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclScan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStringObj.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStrToD.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThread.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadAlloc.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadJoin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclThreadStorage.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclStubLib.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTimer.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTrace.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtf.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclUtil.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclVar.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic/tclTomMathInterface.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixChan.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixEvent.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFCmd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixFile.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixPipe.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixSock.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixTime.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 -DTCL_LIBRARY=\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5\" \
-DTCL_PACKAGE_PATH="\"/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib \"" \
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixInit.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixThrd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixCompat.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclUnixNotfy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclLoadDl.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bncore.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_reverse.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_fast_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_and.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_add_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clamp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_clear_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_cmp_mag.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_count_bits.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_div_3.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_exch.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_expt_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_grow.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_copy.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_multi.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_init_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_karatsuba_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_lshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mod_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_2d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_mul_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_neg.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_or.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_radix_smap.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_read_radix.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_rshd.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_set.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_shrink.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sqrt.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_sub_d.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_to_unsigned_bin_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_mul.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toom_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_toradix_n.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_unsigned_bin_size.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_xor.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_mp_zero.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_add.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_mul_digs.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sqr.c
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath/bn_s_mp_sub.c
rm -f libtclstub8.5.a
ar cr libtclstub8.5.a tclStubLib.o ; ranlib libtclstub8.5.a
rm -f libtcl8.5.a
ar cr libtcl8.5.a regcomp.o regexec.o regfree.o regerror.o tclAlloc.o tclAsync.o tclBasic.o tclBinary.o tclCkalloc.o tclClock.o tclCmdAH.o tclCmdIL.o tclCmdMZ.o tclCompCmds.o tclCompExpr.o tclCompile.o tclConfig.o tclDate.o tclDictObj.o tclEncoding.o tclEnv.o tclEvent.o tclExecute.o tclFCmd.o tclFileName.o tclGet.o tclHash.o tclHistory.o tclIndexObj.o tclInterp.o tclIO.o tclIOCmd.o tclIORChan.o tclIOGT.o tclIOSock.o tclIOUtil.o tclLink.o tclListObj.o tclLiteral.o tclLoad.o tclMain.o tclNamesp.o tclNotify.o tclObj.o tclPanic.o tclParse.o tclPathObj.o tclPipe.o tclPkg.o tclPkgConfig.o tclPosixStr.o tclPreserve.o tclProc.o tclRegexp.o tclResolve.o tclResult.o tclScan.o tclStringObj.o tclStrToD.o tclThread.o tclThreadAlloc.o tclThreadJoin.o tclThreadStorage.o tclStubInit.o tclStubLib.o tclTimer.o tclTrace.o tclUtf.o tclUtil.o tclVar.o tclTomMathInterface.o tclUnixChan.o tclUnixEvent.o tclUnixFCmd.o tclUnixFile.o tclUnixPipe.o tclUnixSock.o tclUnixTime.o tclUnixInit.o tclUnixThrd.o tclUnixCompat.o tclUnixNotfy.o tclLoadDl.o bncore.o bn_reverse.o bn_fast_s_mp_mul_digs.o bn_fast_s_mp_sqr.o bn_mp_add.o bn_mp_and.o bn_mp_add_d.o bn_mp_clamp.o bn_mp_clear.o bn_mp_clear_multi.o bn_mp_cmp.o bn_mp_cmp_d.o bn_mp_cmp_mag.o bn_mp_copy.o bn_mp_count_bits.o bn_mp_div.o bn_mp_div_d.o bn_mp_div_2.o bn_mp_div_2d.o bn_mp_div_3.o bn_mp_exch.o bn_mp_expt_d.o bn_mp_grow.o bn_mp_init.o bn_mp_init_copy.o bn_mp_init_multi.o bn_mp_init_set.o bn_mp_init_size.o bn_mp_karatsuba_mul.o bn_mp_karatsuba_sqr.o bn_mp_lshd.o bn_mp_mod.o bn_mp_mod_2d.o bn_mp_mul.o bn_mp_mul_2.o bn_mp_mul_2d.o bn_mp_mul_d.o bn_mp_neg.o bn_mp_or.o bn_mp_radix_size.o bn_mp_radix_smap.o bn_mp_read_radix.o bn_mp_rshd.o bn_mp_set.o bn_mp_shrink.o bn_mp_sqr.o bn_mp_sqrt.o bn_mp_sub.o bn_mp_sub_d.o bn_mp_to_unsigned_bin.o bn_mp_to_unsigned_bin_n.o bn_mp_toom_mul.o bn_mp_toom_sqr.o bn_mp_toradix_n.o bn_mp_unsigned_bin_size.o bn_mp_xor.o bn_mp_zero.o bn_s_mp_add.o bn_s_mp_mul_digs.o bn_s_mp_sqr.o bn_s_mp_sub.o ; ranlib libtcl8.5.a
gcc -c -O2 -pipe -Wall -fPIC -I"." -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../generic -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../libtommath -DPACKAGE_NAME=\"tcl\" -DPACKAGE_TARNAME=\"tcl\" -DPACKAGE_VERSION=\"8.5\" -DPACKAGE_STRING=\"tcl\ 8.5\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_SYS_PARAM_H=1 -DTCL_CFGVAL_ENCODING=\"iso8859-1\" -DSTATIC_BUILD=1 -DMODULE_SCOPE=extern\ __attribute__\(\(__visibility__\(\"hidden\"\)\)\) -DTCL_SHLIB_EXT=\".so\" -DTCL_CFG_OPTIMIZED=1 -DTCL_CFG_DEBUG=1 -DTCL_TOMMATH=1 -DMP_PREC=4 -D_LARGEFILE64_SOURCE=1 -DTCL_WIDE_INT_IS_LONG=1 -DHAVE_GETCWD=1 -DHAVE_OPENDIR=1 -DHAVE_STRTOL=1 -DHAVE_WAITPID=1 -DHAVE_GETADDRINFO=1 -DUSE_TERMIOS=1 -DHAVE_SYS_TIME_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_GMTIME_R=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MKTIME=1 -DHAVE_TM_GMTOFF=1 -DHAVE_TIMEZONE_VAR=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_BLKCNT_T=1 -DHAVE_INTPTR_T=1 -DHAVE_UINTPTR_T=1 -DHAVE_SIGNED_CHAR=1 -DHAVE_LANGINFO=1 -DHAVE_SYS_IOCTL_H=1 -DTCL_UNLOAD_DLLS=1 /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix/../unix/tclAppInit.c
gcc -O2 -pipe -Wl,--export-dynamic tclAppInit.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/tcl8.5.9/unix -ltcl8.5 -ldl -lieee -lm \
-Wl,-rpath,/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -o tclsh
if [ $? -ne 0 ] ; then
echo "TCL make failed"
exit 1
fi
make install
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin
Installing libtcl8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing tclsh as /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin/tclsh8.5
Installing tclConfig.sh to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing libtclstub8.5.a to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/
Installing message catalogs
Creating msgs
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/opt0.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/http1.0
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/encoding
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.4/platform
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5/../tcl8/8.5
Installing header files
Installing library files to /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib/tcl8.5
Installing library http1.0 directory
Installing package http 2.7.5 as a Tcl Module
Installing library opt0.4 directory
Installing package msgcat 1.4.3 as a Tcl Module
Installing package tcltest 2.3.2 as a Tcl Module
Installing package platform 1.0.9 as a Tcl Module
Installing package platform::shell 1.1.4 as a Tcl Module
Installing library encoding directory
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man1
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/man3
Making directory /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/man/mann
Installing and cross-linking top-level (.1) docs
Installing and cross-linking C API (.3) docs
Installing and cross-linking command (.n) docs
if [ $? -ne 0 ] ; then
echo "TCL make install failed"
exit 1
fi
cd $SW_BLDDIR
tar -xzf /sw/sources/namd/${NAMD_VER}/${NAMD_SRCDIR}.tar.gz
cd $NAMD_SRCDIR
tar -xf ${CHARM_SRCDIR}.tar
rm -f ${CHARM_SRCDIR}.tar
cd $CHARM_SRCDIR
#-- Apply patch for charm++ bug triggered to new release of craype 2015-09
# This patch came from https://charm.cs.illinois.edu/redmine/issues/841
cat > fix_gethugepagesize.patch << EOF
diff --git a/src/arch/gni/Makefile.machine b/src/arch/gni/Makefile.machine
index c9652c9..b7a19ad 100644
--- a/src/arch/gni/Makefile.machine
+++ b/src/arch/gni/Makefile.machine
@@ -9,8 +9,5 @@ charm++: hybridAPI
.PHONY: hybridAPI
endif
-\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h \$(L)/cray_tlbhack.o
-
-\$(L)/cray_tlbhack.o: cray_tlbhack.c
- \$(CHARMC) -o \$@ cray_tlbhack.c
+\$(L)/libconv-cplus-n.a: machine.h machine.c machine-common-core.c machine-broadcast.c machine-lrts.h machine-pxshm.c machine-xpmem.c machine-persistent.c machine-commthd-util.c machine-smp.c pcqueue.h
diff --git a/src/scripts/charmc b/src/scripts/charmc
index 21fb325..88676b4 100755
--- a/src/scripts/charmc
+++ b/src/scripts/charmc
@@ -853,12 +853,6 @@ if [ -n "\$CHARMDEBUG" -a -z "\$SEQUENTIAL" -a -z "\$NATIVE" ]; then
OPTS_CPP="\$OPTS_CPP -O0 -g"
fi
-if [ -z "\$NATIVE" -a -n "\$UGNI_CFLAGS" ]
-then
- linkopt=\`env | grep "HUGETLB[0-9]*[MKG]_POST_LINK_OPTS" 2> /dev/null\`
- test -z "\$linkopt" && POST_LIBRARIES=\`AddList \$POST_LIBRARIES \$CHARMLIB/cray_tlbhack.o\`
-fi
-
PROCESSED_MODULES=""
if [ "\$WERROR" = "1" ]
EOF
patch -p1 < fix_gethugepagesize.patch
patching file src/arch/gni/Makefile.machine
patching file src/scripts/charmc
Hunk #1 succeeded at 842 (offset -11 lines).
./build charm++ gni-crayxc --no-build-shared --with-production
Creating dir: gni-crayxc
Creating dir: gni-crayxc/tmp
Copying src/scripts/Makefile to gni-crayxc/tmp
Soft-linking over bin
Soft-linking over lib
Soft-linking over lib_so
Soft-linking over include
Soft-linking over tmp
Generating gni-crayxc/tmp/conv-mach-pre.sh
Generating gni-crayxc/tmp/conv-mach-opt.h, conv-mach-opt.sh
Performing '/usr/bin/gmake basics OPTS=-optimize -production QUIET= CONFIG_OPTS=--disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats ' in gni-crayxc/tmp
pwd
/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp
find . -type l -exec rm {} \;
rm -rf QuickThreads
rm -rf libs
rm -rf ../bin ; mkdir ../bin
if case `cat .vdir` in *win32*) true;; *win64*) true;; *) false;; esac; then \
cp -f ../../src/arch/`cat .vdir | awk -F- '{print $2}'`/unix2nt* ../bin; \
cp -f ../../src/arch/win32/createlink.exe ../bin; \
fi
rm -rf ../lib ; mkdir ../lib
rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso
rm -rf ../examples
rm -rf ../tests
rm -rf ../doc ; ln -s ../doc ../doc
../../src/scripts/gatherflat ../../src/scripts .
./gatherflat ../../src/conv-core .
./gatherflat ../../src/conv-ldb .
./gatherflat ../../src/conv-ccs .
./gatherflat ../../src/conv-perf .
./gatherflat ../../src/ck-core .
./gatherflat ../../src/ck-perf .
./gatherflat ../../src/ck-tune .
./gatherflat ../../src/ck-ldb .
./gatherflat ../../src/ck-com .
./gatherflat ../../src/ck-cp .
./gatherflat ../../src/conv-com .
./gatherflat ../../src/langs/simplemsg .
./gatherflat ../../src/langs/pvmc .
./gatherflat ../../src/langs/bluegene .
./gatherflat ../../src/langs/f90charm .
./gatherflat ../../src/xlatcpm .
./gathertree ../../src/QuickThreads QuickThreads
./gathertree ../../src/libs libs
./gathertree ../../src/arch/util .
./gathertree ../../src/util .
./gathertree ../../src/langs langs
./gathertree ../../src/langs/jade langs/jade
./gathertree ../../src/arch/common .
./gathertree ../../src/arch/`cat .gdir` .
test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat .gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat .gdir.new` . || true
./gatherflat ../../src/arch/`cat .vdir` .
./gathertree ../../examples ../examples
./gathertree ../../tests ../tests
rm -f ../bin/dep.pl ; cp dep.pl ../bin/
chmod +x charmc
./system_ln ../tmp/charmc ../bin/
rm -rf ../include ; mkdir ../include
./system_ln ../tmp/conv-*.*h ../include
./system_ln ../tmp/cc-*.*h ../include
./system_ln ../tmp/conv-mach-opt.sh ../include
if [ -x ./special.sh ] ; then ./special.sh ; fi
if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi
touch dirs+sources
/usr/bin/gmake charmxi
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
./configure --disable-controlpoint --disable-tracing --disable-tracing-commthread --disable-charmdebug --disable-replay --disable-error-checking --disable-stats
Error checking is disabled
Statistics collection is disabled
Charm tracing is disabled
Charm tracing communication thread is disabled
CharmDebug is disabled
Charm record/replay is disabled
CCS is enabled
Charm control point is disabled
Charm LB user data is disabled
Setting load balancing timer type as 'double'
checking machine name... gni-crayxc
checking "cp command as"... cp -p
checking "C++ compiler as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether C++ compiler works"... "ok"
checking "C++ linker as"... "CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include "
checking "whether linker works"... "ok"
checking "Native C++ compiler as"... "g++ "
checking "Sequential C++ compiler as"... "g++ "
Setting charm++ envelope refnum field to unsigned short
Configuring support for message priorities of arbitrary size (bitvectors)
checking "whether compiler generates code for 64-bit"... "yes"
checking "whether compiler supports std::alignment_of"... "no"
checking "whether has values.h "... "yes"
checking "whether has stdint.h "... "yes"
checking "whether has malloc.h "... "yes"
checking "whether has alloca.h "... "yes"
checking "whether has regex.h "... "yes"
checking "whether long long works"... "yes"
checking "whether __int64 works"... "no"
checking "whether __int128 (128-bit integer) works"... "yes"
checking "whether __int128_t (128-bit integer) works"... "yes"
checking "whether long double works"... "yes"
checking "whether ucontext has FPU pointer"... "yes"
checking "whether ucontext uses uc_regs"... "no"
checking "whether ucontext has pointer (v_regs) of vector type"... "no"
checking "whether ibverbs ibv_port_attr has link_layer field"... "yes"
checking "whether inline works in C"... "yes"
checking "whether C++ signed char and char differ"... "yes"
checking "whether C++ allows declaration of varsize array"... "yes"
checking "whether typeinfo/typeid works"... "ok"
checking "whether std::iterator_traits is defined"... "ok"
checking "whether std::distance is defined"... "ok"
checking "whether std::inserter is defined"... "ok"
checking "whether std::unordered_map is defined"... "no"
checking "whether anon structs are permitted"... "yes"
checking "whether operator delete can be overloaded in same class"... "ok"
checking "whether offsetof is defined"... "yes"
checking "whether GCC x86 assembly works"... "yes"
checking "whether GCC x86 assembly for atomic increment works"... "yes"
checking "whether GCC IA64 assembly works"... "no"
checking "whether asm eieio assembly works"... "no"
checking "whether __thread (Thread Local Storage) is supported"... "yes"
checking "whether synchronization primitives (__sync_add_and_fetch) works in C"... "yes"
checking "whether synchronization primitives (__sync_synchronize) works in C"... "yes"
checking "whether fence intrinsic primitives (__builtin_Xfence_ia32) works in C"... "no"
checking "whether switching TLS register (64-bit) is supported"... "yes"
checking "whether getrusage accepts RUSAGE_THREAD"... "yes"
checking "whether has asctime"... "yes"
checking "whether has log2"... "yes"
checking "whether has sqrtf"... "yes"
checking "whether has fabsf"... "yes"
checking "whether has mkstemp"... "yes"
checking "whether has system"... "yes"
checking "whether has sync()"... "yes"
checking "whether has fsync()"... "yes"
checking "whether has fdatasync()"... "yes"
checking "whether has sbrk"... "yes"
checking "whether has _setjmp/_longjmp"... "yes"
checking "whether has mstats"... "no"
checking "whether has mallinfo"... "yes"
checking "whether has popen"... "yes"
checking "whether has poll"... "yes"
checking "whether has getpagesize"... "yes"
checking "whether has getpid"... "yes"
checking "whether has kill"... "yes"
checking "whether has setpriority"... "yes"
checking "whether to use signal-safe system() "... "no"
checking "whether sched_setaffinity call exists"... "yes"
checking "whether pthread_setaffinity_np call exists"... "yes"
checking "whether pthread_spin_lock exists"... "yes"
checking "whether bindprocessor call exists"... "no"
checking "whether dlopen links without -ldl"... "no"
checking "whether dlopen links with -ldl"... "yes"
checking "whether gethostname call exists"... "yes"
checking "whether getProcAddress works"... "no"
checking "whether has socklen_t"... "yes"
checking "whether getifaddrs call exists"... "yes"
checking "whether the mmap() syscall exists"... "yes"
checking "whether mmap() accepts MAP_ANON"... "yes"
checking "whether mmap() accepts MAP_NORESERVE"... "yes"
checking "whether has get_myaddress"... "yes"
checking "whether has mprotect"... "yes"
checking "whether glibc backtrace works"... "yes"
checking "whether has sleep "... "yes"
checking "whether has usleep "... "yes"
checking "whether personality() and ADDR_NO_RANDOMIZE exist"... "yes"
checking "whether has zlib"... "yes"
checking "whether has elf.h "... "yes"
checking "whether has Multiprocessing.h for Apple "... "no"
checking "whether ntohl is available"... "yes"
checking "whether has libjpeg"... "yes"
checking "whether Python is installed"... "no"
checking "whether PMI_Get_nid exists"... "yes"
checking "whether Cray rca library is available"... "yes"
checking "whether Cray rca_has get_max_dimension"... "yes"
BALANCED_INJECTION test disabled on Aries network
checking "whether can build shared library"... "yes"
checking for sync... sync
checking "F77 compiler as"... "ftn "
checking "whether Fortran 77 compiler works"... "yes"
checking "F90 compiler as"... "ftn "
checking "whether Fortran 90 compiler works"... "yes"
checking subroutine name used by Fortran 90 compiler... ONESCORE
checking Fortran 90 mod name is capital... "no"
checking Fortran 90 mod name extension... "mod"
configure: creating ./config.status
config.status: creating libs/ck-libs/ampi/ampiCC
config.status: creating libs/ck-libs/ampi/ampirun
config.status: creating conv-autoconfig.h
config.status: executing config-cleanup commands
config.status: executing default commands
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-main.o ../../src/xlat-i/xi-main.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-symbol.o ../../src/xlat-i/xi-symbol.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-grammar.tab.o ../../src/xlat-i/xi-grammar.tab.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -DYY_NEVER_INTERACTIVE -c -o xi-scan.o ../../src/xlat-i/xi-scan.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o xi-util.o ../../src/xlat-i/xi-util.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o sdag-globals.o ../../src/xlat-i/sdag/sdag-globals.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CSdagConstruct.o ../../src/xlat-i/sdag/CSdagConstruct.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C
../bin/charmc -host -language c++ -cp ../bin/ -o charmxi xi-main.o xi-symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o CParsedFile.o
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
/usr/bin/gmake headerlinks
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
../bin/charmc -intrinsic -optimize -production ckcallback.ci && touch ckcallback.ci.stamp
../bin/charmc -intrinsic -optimize -production DummyLB.ci && touch DummyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyLB.ci && touch GreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommLB.ci && touch CommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RandCentLB.ci && touch RandCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineLB.ci && touch RefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineCommLB.ci && touch RefineCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RotateLB.ci && touch RotateLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistributedLB.ci && touch DistributedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridLB.ci && touch HybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ComboCentLB.ci && touch ComboCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineSwapLB.ci && touch RefineSwapLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborLB.ci && touch NeighborLB.ci.stamp
../bin/charmc -intrinsic -optimize -production OrbLB.ci && touch OrbLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BlockLB.ci && touch BlockLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyCommLB.ci && touch GreedyCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphPartLB.ci && touch GraphPartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GraphBFTLB.ci && touch GraphBFTLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommLB.ci && touch GridCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridCommRefineLB.ci && touch GridCommRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HbmLB.ci && touch HbmLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineKLB.ci && touch RefineKLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareCommLB.ci && touch TempAwareCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TreeMatchLB.ci && touch TreeMatchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GreedyAgentLB.ci && touch GreedyAgentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NeighborCommLB.ci && touch NeighborCommLB.ci.stamp
../bin/charmc -intrinsic -optimize -production PhasebyArrayLB.ci && touch PhasebyArrayLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RecBipartLB.ci && touch RecBipartLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommAwareRefineLB.ci && touch CommAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production AdaptiveLB.ci && touch AdaptiveLB.ci.stamp
../bin/charmc -intrinsic -optimize -production MetisLB.ci && touch MetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ScotchLB.ci && touch ScotchLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TeamLB.ci && touch TeamLB.ci.stamp
../bin/charmc -intrinsic -optimize -production WSLB.ci && touch WSLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridMetisLB.ci && touch GridMetisLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareGreedyLB.ci && touch TempAwareGreedyLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridSeedLB.ci && touch GridHybridSeedLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoCentLB.ci && touch TopoCentLB.ci.stamp
../bin/charmc -intrinsic -optimize -production GridHybridLB.ci && touch GridHybridLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TopoLB.ci && touch TopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production RefineTopoLB.ci && touch RefineTopoLB.ci.stamp
../bin/charmc -intrinsic -optimize -production TempAwareRefineLB.ci && touch TempAwareRefineLB.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmarshall.ci && touch ckmarshall.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarray.ci && touch ckarray.ci.stamp
../bin/charmc -intrinsic -optimize -production cklocation.ci && touch cklocation.ci.stamp
../bin/charmc -intrinsic -optimize -production ckreduction.ci && touch ckreduction.ci.stamp
../bin/charmc -intrinsic -optimize -production ckarrayreductionmgr.ci && touch ckarrayreductionmgr.ci.stamp
../bin/charmc -intrinsic -optimize -production tempo.ci && touch tempo.ci.stamp
../bin/charmc -intrinsic -optimize -production waitqd.ci && touch waitqd.ci.stamp
../bin/charmc -intrinsic -optimize -production ckfutures.ci && touch ckfutures.ci.stamp
../bin/charmc -intrinsic -optimize -production ckcheckpoint.ci && touch ckcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production ckmemcheckpoint.ci && touch ckmemcheckpoint.ci.stamp
../bin/charmc -intrinsic -optimize -production LBDatabase.ci && touch LBDatabase.ci.stamp
../bin/charmc -intrinsic -optimize -production MetaBalancer.ci && touch MetaBalancer.ci.stamp
../bin/charmc -intrinsic -optimize -production CentralLB.ci && touch CentralLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NullLB.ci && touch NullLB.ci.stamp
../bin/charmc -intrinsic -optimize -production BaseLB.ci && touch BaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production NborBaseLB.ci && touch NborBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production DistBaseLB.ci && touch DistBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production HybridBaseLB.ci && touch HybridBaseLB.ci.stamp
../bin/charmc -intrinsic -optimize -production EveryLB.ci && touch EveryLB.ci.stamp
../bin/charmc -intrinsic -optimize -production CommonLBs.ci && touch CommonLBs.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-summary.ci && touch trace-summary.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-projections.ci && touch trace-projections.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-autoPerf.ci && touch trace-autoPerf.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-simple.ci && touch trace-simple.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-controlPoints.ci && touch trace-controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-Tau.ci && touch trace-Tau.ci.stamp
../bin/charmc -intrinsic -optimize -production trace-utilization.ci && touch trace-utilization.ci.stamp
../bin/charmc -intrinsic -optimize -production BlueGene.ci && touch BlueGene.ci.stamp
../bin/charmc -intrinsic -optimize -production ComlibManager.ci && touch ComlibManager.ci.stamp
../bin/charmc -intrinsic -optimize -production controlPoints.ci && touch controlPoints.ci.stamp
../bin/charmc -intrinsic -optimize -production pathHistory.ci && touch pathHistory.ci.stamp
../bin/charmc -intrinsic -optimize -production mpi-mainmodule.ci && touch mpi-mainmodule.ci.stamp
Soft-linking headers...
for hdr in 3dgridrouter.h AAMLearner.h AAPLearner.h AdaptiveLB.decl.h AdaptiveLB.h BGPTorus.h BGQTorus.h BaseLB.decl.h BaseLB.h BlockLB.decl.h BlockLB.h BlueGene.decl.h BlueGene.h BroadcastStrategy.h CentralLB.decl.h CentralLB.h CentralLBMsg.h ChunkMulticastStrategy.h CkArray.decl.h CkArrayReductionMgr.decl.h CkCallback.decl.h CkCheckpoint.decl.h CkFutures.decl.h CkLocation.decl.h CkMarshall.decl.h CkMemCheckpoint.decl.h CkReduction.decl.h ComboCentLB.decl.h ComboCentLB.h ComlibArrayListener.h ComlibLearner.h ComlibManager.h ComlibSectionInfo.h ComlibStats.h ComlibStrategy.h CommAwareRefineLB.decl.h CommAwareRefineLB.h CommLB.decl.h CommLB.h CommLBHeap.h CommonLBs.decl.h ControlPoints.decl.h DirectMulticastStrategy.h DistBaseLB.decl.h DistBaseLB.h DistributedLB.decl.h DistributedLB.h DummyLB.decl.h DummyLB.h DummyStrategy.h EachToManyMulticastStrategy.h EveryLB.decl.h GraphBFTLB.decl.h GraphBFTLB.h GraphPartLB.decl.h GraphPartLB.h GreedyAgentLB.decl.h GreedyAgentLB.h GreedyCommLB.decl.h GreedyCommLB.h GreedyLB.decl.h GreedyLB.h GridCommLB.decl.h GridCommLB.h GridCommRefineLB.decl.h GridCommRefineLB.h GridHybridLB.decl.h GridHybridLB.h GridHybridSeedLB.decl.h GridHybridSeedLB.h GridMetisLB.decl.h GridMetisLB.h HbmLB.decl.h HbmLB.h HybridBaseLB.decl.h HybridBaseLB.h HybridLB.decl.h HybridLB.h HybridLBMsg.h LBAgent.h LBComm.h LBDBManager.h LBDatabase.decl.h LBDatabase.h LBMachineUtil.h LBOM.h LBObj.h LBProfit.h LBSimulation.h MPIStrategy.h MeshStreamingStrategy.h MetaBalancer.decl.h MetaBalancer.h MetisLB.decl.h MetisLB.h MsgPacker.h MultiRingMulticast.h MulticastStrategy.h NborBaseLB.decl.h NborBaseLB.h NeighborCommLB.decl.h NeighborCommLB.h NeighborLB.decl.h NeighborLB.h NeighborLBMsg.h NodeMulticast.h NullLB.decl.h OneTimeMulticastStrategy.h OrbLB.decl.h OrbLB.h PathHistory.decl.h PhasebyArrayLB.decl.h PhasebyArrayLB.h PipeBroadcastStrategy.h PrioStreaming.h RTH.h RandCentLB.decl.h RandCentLB.h RecBipartLB.decl.h RecBipartLB.h RectMulticastStrategy.h RefineCommLB.decl.h RefineCommLB.h RefineKLB.decl.h RefineKLB.h RefineLB.decl.h RefineLB.h RefineSwapLB.decl.h RefineSwapLB.h RefineTopoLB.decl.h RefineTopoLB.h Refiner.h RefinerApprox.h RefinerComm.h RefinerTemp.h RingMulticastStrategy.h RotateLB.decl.h RotateLB.h SSE-Double.h SSE-Float.h ScotchLB.decl.h ScotchLB.h StreamingStrategy.h TeamLB.decl.h TeamLB.h TempAwareCommLB.decl.h TempAwareCommLB.h TempAwareGreedyLB.decl.h TempAwareGreedyLB.h TempAwareRefineLB.decl.h TempAwareRefineLB.h TopoCentLB.decl.h TopoCentLB.h TopoLB.decl.h TopoLB.h TopoManager.h TraceAutoPerf.decl.h TraceControlPoints.decl.h TraceProjections.decl.h TraceSimple.decl.h TraceSummary.decl.h TraceTau.decl.h TraceUtilization.decl.h TreeMatchLB.decl.h TreeMatchLB.h WSLB.decl.h WSLB.h XTTorus.h arrayRedistributor.h autoPerfAPI.h bgconverse.h bigsim_debug.h bigsim_logs.h bigsim_network.h bigsim_ooc.h bigsim_record.h bigsim_timing.h bitvecset.h blue-conv.h blue.h blue_defs.h blue_impl.h blue_types.h ccs-auth.c ccs-auth.h ccs-client.c ccs-client.h ccs-server.h charm++.h charm-api.h charm.h ck.h ckBIconfig.h ckIgetControl.h ckarray.h ckarrayindex.h ckarrayreductionmgr.h ckbitvector.h ckcallback-ccs.h ckcallback.h ckcausalmlog.h ckcheckpoint.h ckcomplex.h ckdirect.h ckdll.h ckevacuation.h ckfutures.h ckgraph.h ckgraphTemp.h ckhashtable.h ckheap.h ckimage.h cklists.h ckliststring.h cklocation.h cklocrec.h ckmemcheckpoint.h ckmessage.h ckmessagelogging.h ckmigratable.h ckobjQ.h ckobjid.h ckreduction.h cksection.h cksequence.h cksequence_factory.h cksequence_internal.h ckset.h ckstatistics.h ckstream.h cktiming.h ckvector3d.h cmidirect.h cmidirectmanytomany.h cmimemcpy.h cmipool.h cmiqueue.h cmitls.h comlib.decl.h comlib.h controlPoints.h controlPointsf.h conv-autoconfig.h conv-ccs.h conv-common.h conv-config.h conv-config.sh conv-cpath.h conv-cpm.h conv-lists.h conv-mach.h conv-mach.sh conv-qd.h conv-random.h conv-trace.h convcomlib.h convcomlibmanager.h convcomlibstrategy.h converse.h cp_effects.h cpthreads.h crc32.h debug-charm.h debug-conv++.h debug-conv.h dummyconversestrategy.h elements.h envelope-path.h envelope.h graph.h graphrouter.h gridrouter.h hypercuberouter.h hypercubetopology.h init.h lbdb++.h lbdb.h manager.h memory-isomalloc.h mempool.h middle-blue.h middle-conv.h middle.h mpi-interoperate.h mpi_main.decl.h msgq.h objid.h pathHistory.h persistent.h petable.h pipebroadcastconverse.h pipelinestrategy.h prefixrouter.h pup.h pup_c.h pup_cmialloc.h pup_mpi.h pup_paged.h pup_stl.h pup_toNetwork.h pup_toNetwork4.h pupf.h pvm3.h pvmc.h qd.h queueing.h rand48_replacement.h random_sequence.h readonly.h register.h router.h routerstrategy.h sdag.h shared-alloc.h simd.h simplemsg.h sm.h sockRoutines.c sockRoutines.h stats.h strided_sequence.h tempo.decl.h tempo.h topology.h trace-autoPerf.h trace-bluegene.h trace-common.h trace-controlPoints.h trace-projections.h trace-simple.h trace.h treerouter.h vector2d.h waitqd.decl.h waitqd.h ; do test ! -f "../include/`basename $hdr`" && ./system_ln "../tmp/$hdr" ../include ; done
touch headerlinks
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp'
touch basics
Performing '/usr/bin/gmake charm++ OPTS=-optimize -production QUIET=' in gni-crayxc/tmp
../bin/charmc -optimize -production -I. -c -o DummyLB.o DummyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDummyLB.a DummyLB.o
ar: creating ../lib/libmoduleDummyLB.a
../bin/charmc -optimize -production -I. -c -o GreedyLB.o GreedyLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyLB.a GreedyLB.o
ar: creating ../lib/libmoduleGreedyLB.a
../bin/charmc -optimize -production -I. -c -o CommLB.o CommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommLB.a CommLB.o
ar: creating ../lib/libmoduleCommLB.a
../bin/charmc -optimize -production -I. -c -o RandCentLB.o RandCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRandCentLB.a RandCentLB.o
ar: creating ../lib/libmoduleRandCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineLB.o RefineLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineLB.a RefineLB.o
ar: creating ../lib/libmoduleRefineLB.a
../bin/charmc -optimize -production -I. -c -o RefineCommLB.o RefineCommLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineCommLB.a RefineCommLB.o
ar: creating ../lib/libmoduleRefineCommLB.a
cp -f libmoduleRefineCommLB.dep ../lib/
../bin/charmc -optimize -production -I. -c -o RotateLB.o RotateLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRotateLB.a RotateLB.o
ar: creating ../lib/libmoduleRotateLB.a
../bin/charmc -optimize -production -I. -c -o DistributedLB.o DistributedLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleDistributedLB.a DistributedLB.o
ar: creating ../lib/libmoduleDistributedLB.a
../bin/charmc -optimize -production -I. -c -o HybridLB.o HybridLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleHybridLB.a HybridLB.o
ar: creating ../lib/libmoduleHybridLB.a
../bin/charmc -optimize -production -I. -c -o ComboCentLB.o ComboCentLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleComboCentLB.a ComboCentLB.o
ar: creating ../lib/libmoduleComboCentLB.a
../bin/charmc -optimize -production -I. -c -o RefineSwapLB.o RefineSwapLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleRefineSwapLB.a RefineSwapLB.o
ar: creating ../lib/libmoduleRefineSwapLB.a
../bin/charmc -optimize -production -I. -c -o NeighborLB.o NeighborLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleNeighborLB.a NeighborLB.o
ar: creating ../lib/libmoduleNeighborLB.a
../bin/charmc -optimize -production -I. -c -o OrbLB.o OrbLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleOrbLB.a OrbLB.o
ar: creating ../lib/libmoduleOrbLB.a
../bin/charmc -optimize -production -I. -c -o BlockLB.o BlockLB.C
../bin/charmc -optimize -production -o ../lib/libmoduleBlockLB.a BlockLB.o
ar: creating ../lib/libmoduleBlockLB.a
../bin/charmc -optimize -production -I. -c -o GreedyCommLB.o GreedyCommLB.C
../bin/charmc -optimize -production -I. -c -o manager.o manager.C
../bin/charmc -optimize -production -o ../lib/libmoduleGreedyCommLB.a GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleGreedyCommLB.a
../bin/charmc -optimize -production -I. -c -o CommonLBs.o CommonLBs.C
../bin/charmc -optimize -production -o ../lib/libmoduleCommonLBs.a CommonLBs.o DummyLB.o GreedyLB.o CommLB.o RandCentLB.o RefineLB.o RefineCommLB.o RotateLB.o DistributedLB.o HybridLB.o ComboCentLB.o RefineSwapLB.o NeighborLB.o OrbLB.o BlockLB.o GreedyCommLB.o manager.o
ar: creating ../lib/libmoduleCommonLBs.a
/usr/bin/gmake -C libs/ck-libs/completion
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../../../../bin/charmc -optimize -production -c completion.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o completion.o completion.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmodulecompletion.a completion.o
ar: creating ../../../../lib/libmodulecompletion.a
/bin/cp completion.decl.h ../../../../include
/bin/cp completion.def.h ../../../../include
/bin/cp completion.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/completion'
../bin/charmc -seq -DCMK_NOT_USE_CONVERSE=1 -o sockRoutines-seq.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o trace-common.o trace-common.C
../bin/charmc -optimize -production -I. -c -o tracec.o tracec.C
../bin/charmc -optimize -production -I. -c -o tracef.o tracef.C
../bin/charmc -optimize -production -I. -c -o init.o init.C
../bin/charmc -optimize -production -I. -c -o register.o register.C
../bin/charmc -optimize -production -I. -c -o qd.o qd.C
../bin/charmc -optimize -production -I. -c -o ck.o ck.C
../bin/charmc -optimize -production -I. -c -o msgalloc.o msgalloc.C
../bin/charmc -optimize -production -I. -c -o ckfutures.o ckfutures.C
../bin/charmc -optimize -production -I. -c -o ckIgetControl.o ckIgetControl.C
../bin/charmc -optimize -production -I. -c -o debug-message.o debug-message.C
../bin/charmc -optimize -production -I. -c -o debug-charm.o debug-charm.C
../bin/charmc -optimize -production -I. -c -o ckcallback.o ckcallback.C
../bin/charmc -optimize -production -I. -c -o cklocation.o cklocation.C
../bin/charmc -optimize -production -I. -c -o ckarray.o ckarray.C
../bin/charmc -optimize -production -I. -c -o ckreduction.o ckreduction.C
../bin/charmc -optimize -production -I. -c -o ckarrayreductionmgr.o ckarrayreductionmgr.C
../bin/charmc -optimize -production -I. -c -o tempo.o tempo.C
../bin/charmc -optimize -production -I. -c -o waitqd.o waitqd.C
../bin/charmc -optimize -production -I. -c -o LBDatabase.o LBDatabase.C
../bin/charmc -optimize -production -I. -c -o MetaBalancer.o MetaBalancer.C
../bin/charmc -optimize -production -I. -c -o lbdb.o lbdb.C
../bin/charmc -optimize -production -I. -c -o lbdbf.o lbdbf.C
../bin/charmc -optimize -production -I. -c -o ckobjQ.o ckobjQ.C
../bin/charmc -optimize -production -I. -c -o LBAgent.o LBAgent.C
../bin/charmc -optimize -production -I. -c -o LBProfit.o LBProfit.C
../bin/charmc -optimize -production -I. -c -o ckcheckpoint.o ckcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckmemcheckpoint.o ckmemcheckpoint.C
../bin/charmc -optimize -production -I. -c -o ckevacuation.o ckevacuation.C
../bin/charmc -optimize -production -I. -c -o ckmessagelogging.o ckmessagelogging.C
../bin/charmc -optimize -production -I. -c -o ckcausalmlog.o ckcausalmlog.C
../bin/charmc -optimize -production -I. -c -o ckobjid.o ckobjid.C
../bin/charmc -optimize -production -I. -c -o LBDBManager.o LBDBManager.C
../bin/charmc -optimize -production -I. -c -o LBComm.o LBComm.C
../bin/charmc -optimize -production -I. -c -o LBObj.o LBObj.C
../bin/charmc -optimize -production -I. -c -o LBMachineUtil.o LBMachineUtil.C
../bin/charmc -optimize -production -I. -c -o CentralPredictor.o CentralPredictor.C
../bin/charmc -optimize -production -I. -c -o BaseLB.o BaseLB.C
../bin/charmc -optimize -production -I. -c -o CentralLB.o CentralLB.C
../bin/charmc -optimize -production -I. -c -o HybridBaseLB.o HybridBaseLB.C
../bin/charmc -optimize -production -I. -c -o NborBaseLB.o NborBaseLB.C
../bin/charmc -optimize -production -I. -c -o DistBaseLB.o DistBaseLB.C
../bin/charmc -optimize -production -I. -c -o ckgraphTemp.o ckgraphTemp.C
../bin/charmc -optimize -production -I. -c -o ckgraph.o ckgraph.C
../bin/charmc -optimize -production -I. -c -o LButil.o LButil.C
../bin/charmc -optimize -production -I. -c -o RefinerTemp.o RefinerTemp.C
../bin/charmc -optimize -production -I. -c -o Refiner.o Refiner.C
../bin/charmc -optimize -production -I. -c -o RefinerApprox.o RefinerApprox.C
../bin/charmc -optimize -production -I. -c -o RefinerComm.o RefinerComm.C
../bin/charmc -optimize -production -I. -c -o bitvecset.o bitvecset.c
../bin/charmc -optimize -production -I. -c -o ckset.o ckset.C
../bin/charmc -optimize -production -I. -c -o ckheap.o ckheap.C
../bin/charmc -optimize -production -I. -c -o CommLBHeap.o CommLBHeap.C
../bin/charmc -optimize -production -I. -c -o NullLB.o NullLB.C
../bin/charmc -optimize -production -I. -c -o LBSimulation.o LBSimulation.C
../bin/charmc -optimize -production -I. -c -o ComlibModuleInterface.o ComlibModuleInterface.C
../bin/charmc -optimize -production -I. -c -o modifyScheduler.o modifyScheduler.C
../bin/charmc -optimize -production -I. -c -o charmProjections.o charmProjections.C
../bin/charmc -optimize -production -I. -c -o cktiming.o cktiming.C
../bin/charmc -optimize -production -I. -c -o ckbitvector.o ckbitvector.C
../bin/charmc -optimize -production -I. -c -o pathHistory.o pathHistory.C
../bin/charmc -optimize -production -I. -c -o controlPoints.o controlPoints.C
../bin/charmc -optimize -production -I. -c -o arrayRedistributor.o arrayRedistributor.C
../bin/charmc -optimize -production -I. -c -o cp_effects.o cp_effects.C
../bin/charmc -optimize -production -I. -c -o trace-controlPoints.o trace-controlPoints.C
../bin/charmc -optimize -production -I. -c -o mpi-interoperate.o mpi-interoperate.C
../bin/charmc -optimize -production -o ../lib/libck.a trace-common.o tracec.o tracef.o init.o register.o qd.o ck.o msgalloc.o ckfutures.o ckIgetControl.o debug-message.o debug-charm.o ckcallback.o cklocation.o ckarray.o ckreduction.o ckarrayreductionmgr.o tempo.o waitqd.o LBDatabase.o MetaBalancer.o lbdb.o lbdbf.o ckobjQ.o LBAgent.o LBProfit.o ckcheckpoint.o ckmemcheckpoint.o ckevacuation.o ckmessagelogging.o ckcausalmlog.o ckobjid.o LBDBManager.o LBComm.o LBObj.o LBMachineUtil.o CentralPredictor.o BaseLB.o CentralLB.o HybridBaseLB.o NborBaseLB.o DistBaseLB.o ckgraphTemp.o ckgraph.o LButil.o RefinerTemp.o Refiner.o RefinerApprox.o RefinerComm.o bitvecset.o ckset.o ckheap.o CommLBHeap.o NullLB.o LBSimulation.o ComlibModuleInterface.o modifyScheduler.o charmProjections.o cktiming.o ckbitvector.o pathHistory.o controlPoints.o arrayRedistributor.o cp_effects.o trace-controlPoints.o mpi-interoperate.o
ar: creating ../lib/libck.a
../bin/charmc -optimize -production -I. -c -o convcore.o convcore.c
convcore.c: In function 'ConverseCommonInit':
convcore.c:3563:3: warning: implicit declaration of function 'CmiPoolAllocInit' [-Wimplicit-function-declaration]
CmiPoolAllocInit(30);
^
convcore.c: In function 'ConverseCommonExit':
convcore.c:3657:3: warning: implicit declaration of function 'seedBalancerExit' [-Wimplicit-function-declaration]
seedBalancerExit();
^
convcore.c:3658:3: warning: implicit declaration of function 'EmergencyExit' [-Wimplicit-function-declaration]
EmergencyExit();
^
../bin/charmc -optimize -production -I. -c -o conv-conds.o conv-conds.c
../bin/charmc -optimize -production -I. -c -o queueing.o queueing.C
../bin/charmc -optimize -production -I. -c -o msgmgr.o msgmgr.c
../bin/charmc -optimize -production -I. -c -o cpm.o cpm.c
../bin/charmc -optimize -production -I. -c -o cpthreads.o cpthreads.c
../bin/charmc -optimize -production -I. -c -o futures.o futures.c
../bin/charmc -optimize -production -I. -c -o cldb.o cldb.c
../bin/charmc -optimize -production -I. -c -o topology.o topology.C
../bin/charmc -optimize -production -I. -c -o random.o random.c
../bin/charmc -optimize -production -I. -c -o debug-conv.o debug-conv.c
debug-conv.c: In function 'CpdSearchLeaks':
debug-conv.c:88:3: warning: implicit declaration of function 'check_memory_leaks' [-Wimplicit-function-declaration]
check_memory_leaks(info);
^
../bin/charmc -optimize -production -I. -c -o debug-conv++.o debug-conv++.C
../bin/charmc -optimize -production -I. -c -o generate.o generate.c
../bin/charmc -optimize -production -I. -c -o edgelist.o edgelist.c
../bin/charmc -optimize -production -I. -c -o conv-ccs.o conv-ccs.c
conv-ccs.c: In function 'CcsSendReply':
conv-ccs.c:175:3: warning: implicit declaration of function 'CcsReply' [-Wimplicit-function-declaration]
CcsReply(CpvAccess(ccsReq),replyLen,replyData);
^
../bin/charmc -optimize -production -I. -c -o ccs-builtins.o ccs-builtins.C
../bin/charmc -optimize -production -I. -c -o middle-ccs.o middle-ccs.C
../bin/charmc -optimize -production -I. -c -o traceCore.o traceCore.C
../bin/charmc -optimize -production -I. -c -o traceCoreCommon.o traceCoreCommon.C
../bin/charmc -optimize -production -I. -c -o converseProjections.o converseProjections.C
../bin/charmc -optimize -production -I. -c -o machineProjections.o machineProjections.C
../bin/charmc -optimize -production -I. -c -o quiescence.o quiescence.c
../bin/charmc -optimize -production -I. -c -o isomalloc.o isomalloc.c
../bin/charmc -optimize -production -I. -c -o mem-arena.o mem-arena.c
../bin/charmc -optimize -production -I. -c -o conv-counter.o conv-counter.c
../bin/charmc -optimize -production -I. -c -o global-nop.o global-nop.c
../bin/charmc -optimize -production -I. -c -o cmipool.o cmipool.c
../bin/charmc -optimize -production -I. -c -o cpuaffinity.o cpuaffinity.c
../bin/charmc -optimize -production -I. -c -o cputopology.o cputopology.C
../bin/charmc -optimize -production -I. -c -o cmitls.o cmitls.c
../bin/charmc -optimize -production -I. -c -o memoryaffinity.o memoryaffinity.c
./commitid.sh
Copying VERSION.new = v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969 over VERSION =
echo "const char * const CmiCommitID = \"`cat VERSION`\";" > commitid.c
../bin/charmc -optimize -production -I. -c -o commitid.o commitid.c
../bin/charmc -optimize -production -I. -c -o sdag.o sdag.C
../bin/charmc -optimize -production -I. -c -o conv-interoperate.o conv-interoperate.c
../bin/charmc -optimize -production -o ../lib/libconv-core.a convcore.o conv-conds.o queueing.o msgmgr.o cpm.o cpthreads.o futures.o cldb.o topology.o random.o debug-conv.o debug-conv++.o generate.o edgelist.o conv-ccs.o ccs-builtins.o middle-ccs.o traceCore.o traceCoreCommon.o converseProjections.o machineProjections.o quiescence.o isomalloc.o mem-arena.o conv-counter.o global-nop.o cmipool.o cpuaffinity.o cputopology.o cmitls.o memoryaffinity.o commitid.o sdag.o conv-interoperate.o
ar: creating ../lib/libconv-core.a
../bin/charmc -optimize -production -o machine.o -DFOR_CPLUS=1 machine.c
../bin/charmc -optimize -production -o ../lib/libconv-cplus-y.a machine.o
ar: creating ../lib/libconv-cplus-y.a
../bin/charmc -optimize -production -o ../lib/libconv-cplus-n.a -DFOR_CPLUS=0 machine.c
ar: creating ../lib/libconv-cplus-n.a
../bin/charmc -optimize -production -I. -c -o pup_util.o pup_util.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork.o pup_toNetwork.C
../bin/charmc -optimize -production -I. -c -o pup_toNetwork4.o pup_toNetwork4.C
../bin/charmc -optimize -production -I. -c -o pup_xlater.o pup_xlater.C
../bin/charmc -optimize -production -I. -c -o pup_c.o pup_c.C
../bin/charmc -optimize -production -I. -c -o pup_paged.o pup_paged.C
../bin/charmc -optimize -production -I. -c -o pup_cmialloc.o pup_cmialloc.C
../bin/charmc -optimize -production -I. -c -o ckimage.o ckimage.C
../bin/charmc -optimize -production -I. -c -o ckdll.o ckdll.C
../bin/charmc -optimize -production -I. -c -o ckhashtable.o ckhashtable.C
../bin/charmc -optimize -production -I. -c -o sockRoutines.o sockRoutines.c
../bin/charmc -optimize -production -I. -c -o conv-lists.o conv-lists.C
../bin/charmc -optimize -production -I. -c -o RTH.o RTH.C
../bin/charmc -optimize -production -I. -c -o persist-comm.o persist-comm.c
../bin/charmc -optimize -production -I. -c -o mempool.o mempool.c
../bin/charmc -optimize -production -I. -c -o graph.o graph.c
../bin/charmc -optimize -production -I. -c -o TopoManager.o TopoManager.C
../bin/charmc -optimize -production -I. -c -o CrayNid.o CrayNid.c
../bin/charmc -optimize -production -I. -c -o BGQTorus.o BGQTorus.C
../bin/charmc -optimize -production -I. -c -o crc32.o crc32.c
../bin/charmc -optimize -production -I. -c -o lz4.o lz4.c
lz4.c: In function 'lz4_wrapper_decompress':
lz4.c:871:21: warning: implicit declaration of function 'CmiAbort' [-Wimplicit-function-declaration]
if(sinkint < 0) CmiAbort("decode fails\n");
^
../bin/charmc -optimize -production -I. -c -o partitioning_strategies.o partitioning_strategies.C
../bin/charmc -optimize -production -I. -c -o hilbert.o hilbert.C
../bin/charmc -optimize -production -o ../lib/libconv-util.a pup_util.o pup_toNetwork.o pup_toNetwork4.o pup_xlater.o pup_c.o pup_paged.o pup_cmialloc.o ckimage.o ckdll.o ckhashtable.o sockRoutines.o conv-lists.o RTH.o persist-comm.o mempool.o graph.o TopoManager.o CrayNid.o BGQTorus.o crc32.o lz4.o partitioning_strategies.o hilbert.o
ar: creating ../lib/libconv-util.a
../bin/charmc -optimize -production -c pup_f.f90 && ../bin/charmc -optimize -production -cpmod ../include pupmod.M || touch pup_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a
ar: creating ../lib/libconv-utilf.a
../bin/charmc -optimize -production -o ../lib/libldb-rand.o cldb.rand.c
../bin/charmc -optimize -production -o ../lib/libldb-spray.o cldb.spray.c
../bin/charmc -optimize -production -o ../lib/libldb-workstealing.o cldb.workstealing.c
cldb.workstealing.c: In function 'CldAskLoadHandler':
cldb.workstealing.c:114:11: warning: implicit declaration of function 'CldMultipleSendPrio' [-Wimplicit-function-declaration]
CldMultipleSendPrio(receiver, sendLoad, rank, 0);
^
../bin/charmc -optimize -production -o ../lib/libldb-neighbor.o cldb.neighbor.c
../bin/charmc -optimize -production -o ../lib/libldb-none.o cldb.none.c
../bin/charmc -optimize -production -o ../lib/libldb-test.o cldb.test.c
../bin/charmc -optimize -production -o ../lib/libldb-bluegene.o cldb.bluegene.c
../bin/charmc -optimize -production -I. -c -o trace-converse.o trace-converse.c
../bin/charmc -optimize -production -o ../lib/libtrace-converse.a trace-converse.o
ar: creating ../lib/libtrace-converse.a
../bin/charmc -optimize -production -o tracef_f.o -c tracef_f.f90 && ../bin/charmc -optimize -production -cpmod ../include tracemod.M || touch tracef_f.o
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libtracef_f.a tracef_f.o || touch ../lib/libtracef_f.a
ar: creating ../lib/libtracef_f.a
../bin/charmc -optimize -production -I. -o ../lib/libmemory-default.o -DCMK_MEMORY_BUILD_DEFAULT memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os.o -DCMK_MEMORY_BUILD_OS memory.c
../bin/charmc -optimize -production -I. -o ../lib/libmemory-gnu.o -DCMK_MEMORY_BUILD_GNU memory.c || touch ../lib/libmemory-gnu.o
In file included from memory-gnu.c:82:0,
from memory.c:544:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory.c:544:0:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-verbose.o -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-verbose.o
In file included from memory-gnu.c:82:0,
from memory-verbose.c:11,
from memory.c:555:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-verbose.c:11:0,
from memory.c:555:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-paranoid.o -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-paranoid.o
In file included from memory-gnu.c:82:0,
from memory-paranoid.c:258,
from memory.c:559:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-paranoid.c:258:0,
from memory.c:559:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-leak.o -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-leak.o
In file included from memory-gnu.c:82:0,
from memory-leak.c:21,
from memory.c:563:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-leak.c:21:0,
from memory.c:563:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-isomalloc.o -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-isomalloc.o
In file included from memory-gnu.c:82:0,
from memory-isomalloc.c:14,
from memory.c:571:
memory-gnu-internal.c: In function 'mmap_resize':
memory-gnu-internal.c:1494:41: warning: implicit declaration of function 'mremap' [-Wimplicit-function-declaration]
#define CALL_MREMAP(addr, osz, nsz, mv) mremap((addr), (osz), (nsz), (mv))
^
memory-gnu-internal.c:3553:23: note: in expansion of macro 'CALL_MREMAP'
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c:3553:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
char* cp = (char*)CALL_MREMAP((char*)oldp - offset,
^
memory-gnu-internal.c: In function 'sys_trim':
memory-gnu-internal.c:3981:62: warning: comparison between pointer and integer
if ((CALL_MREMAP(sp->base, sp->size, newsize, 0) != MFAIL) ||
^
In file included from memory-isomalloc.c:14:0,
from memory.c:571:
memory-gnu.c: At top level:
memory-gnu.c:259:6: warning: variably modified 'buf_' at file scope
CHUNK_ALIGN_MASK + 1];
^
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-verbose.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch ../lib/libmemory-os-verbose.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-isomalloc.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch ../lib/libmemory-os-isomalloc.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-leak.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK memory.c || touch ../lib/libmemory-os-leak.o
../bin/charmc -optimize -production -o ../lib/libmemory-os-paranoid.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID memory.c || touch ../lib/libmemory-os-paranoid.o
../bin/charmc -optimize -production -I. -o ../lib/libmemory-os-lock.o -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK memory.c || touch ../lib/libmemory-os-lock.o
memory.c:527:0: warning: "MEM_LOCK_AROUND" redefined
#define MEM_LOCK_AROUND(code) code
^
In file included from memory.c:261:0:
memory-lock.c:3:0: note: this is the location of the previous definition
#define MEM_LOCK_AROUND(code) \
^
../bin/charmc -optimize -production -o ../lib/libmemory-os-wrapper.o memory-os-wrapper.C || touch ../lib/libmemory-os-wrapper.o
( /usr/bin/gmake -C QuickThreads clean )
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h libqt.a libstp.a meas.o stp.o qt.o
rm -f qtmdb.s qtmds.s qtmdc.o qtmdb.o qtmds.o run
rm -f Makefile
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
( cd QuickThreads;./configure )
Running configure on generic64
( /usr/bin/gmake -C QuickThreads qt OPTS='-optimize -production -Wno-error' ) || ( echo "Did you try to build net-linux on a 64-bit system? Try net-linux-x86_64" && false )
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
rm -f qtmd.h
../system_ln md/setjmp_d.h qtmd.h
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qt.o qt.c
../../bin/charmc -seq -I. -optimize -production -Wno-error -c -o qtmds.o md/setjmp64.c
md/setjmp64.c: In function 'qt_args_1':
md/setjmp64.c:20:33: warning: implicit declaration of function 'alloca' [-Wimplicit-function-declaration]
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:55:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(rjb);
^
md/setjmp64.c:56:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)rjb, push_buf((void *)jb));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c:60:3: warning: implicit declaration of function 'write' [-Wimplicit-function-declaration]
write(2,"Never get here 2.\n",18);
^
md/setjmp64.c: In function 'qt_args':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:73:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c: In function 'qt_block':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:92:5: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:93:13: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
md/setjmp64.c: In function 'qt_abort':
md/setjmp64.c:20:33: warning: incompatible implicit declaration of built-in function 'alloca'
#define SHIFTSP(pos) {char *osp=alloca(0); alloca((osp-((char*)pos))+256); }
^
md/setjmp64.c:105:3: note: in expansion of macro 'SHIFTSP'
SHIFTSP(sp);
^
md/setjmp64.c:106:11: warning: passing argument 1 of 'longjmp' from incompatible pointer type [-Wincompatible-pointer-types]
longjmp((unsigned long*)sp, push_buf((void *)&help));
^
In file included from md/setjmp64.c:3:0:
/usr/include/setjmp.h:82:13: note: expected 'struct __jmp_buf_tag *' but argument is of type 'long unsigned int *'
extern void longjmp (struct __jmp_buf_tag __env[1], int __val)
^
CHARMINC=..; . ../conv-config.sh; \
../../bin/charmc -seq -I. -shared -optimize -production -Wno-error -o libqt.$CMK_SHARED_SUF qt.o qtmds.o
Warning: building shared library is skipped, possibly due to not supported, check configuration files.
../../bin/charmc -seq -I. -optimize -production -Wno-error -o libqt.a qt.o qtmds.o
ar: creating libqt.a
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/QuickThreads'
cp -f QuickThreads/libqt.a ../lib/libckqt.a
(CHARMINC=.; . ./conv-config.sh; \
test -d ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so && \
cp -f QuickThreads/libqt.$CMK_SHARED_SUF ../lib_so/libckqt.$CMK_SHARED_SUF)
cp: cannot stat `QuickThreads/libqt.so': No such file or directory
gmake: [QUICK_THREADS] Error 1 (ignored)
touch QUICK_THREADS
../bin/charmc -optimize -production -o ../lib/libthreads-default.o -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads -I. threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-default-tls.o -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads -I. threads.c 2> /dev/null || touch ../lib/libthreads-default-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt.o -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c
../bin/charmc -optimize -production -o ../lib/libthreads-qt-tls.o -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-qt-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-context.o -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-tls.o -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-context-tls.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext.o -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-tls.o -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-tls.o
threads.c: In function 'CtgInstallTLS':
threads.c:485:3: warning: implicit declaration of function 'switchTLS' [-Wimplicit-function-declaration]
switchTLS((tlsseg_t *)cur, newtls);
^
threads.c: In function 'CthBaseInit':
threads.c:537:3: warning: implicit declaration of function 'currentTLS' [-Wimplicit-function-declaration]
currentTLS(&_ctgTLS);
^
threads.c: In function 'CthCreateInner':
threads.c:1772:3: warning: implicit declaration of function 'allocNewTLSSeg' [-Wimplicit-function-declaration]
allocNewTLSSeg(&B(result)->tlsseg, result);
^
../bin/charmc -optimize -production -o ../lib/libthreads-pthreads.o -DCMK_THREADS_BUILD_PTHREADS=1 -IQuickThreads threads.c || touch ../lib/libthreads-pthreads.o
../bin/charmc -optimize -production -o ../lib/libthreads-fibers.o -DCMK_THREADS_BUILD_FIBERS=1 -IQuickThreads threads.c 2> /dev/null || touch ../lib/libthreads-fibers.o
../bin/charmc -optimize -production -o ../lib/libthreads-stackcopy.o -DCMK_THREADS_BUILD_STACKCOPY=1 -IQuickThreads threads.c || touch ../lib/libthreads-stackcopy.o
../bin/charmc -optimize -production -o ../lib/libthreads-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads threads.c || touch ../lib/libthreads-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-qt-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c || touch ../lib/libthreads-qt-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-context-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch ../lib/libthreads-context-memoryalias.o
../bin/charmc -optimize -production -o ../lib/libthreads-uJcontext-memoryalias.o -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_JCONTEXT=1 -U_FORTIFY_SOURCE -IQuickThreads -I. threads.c || touch ../lib/libthreads-uJcontext-memoryalias.o
../bin/charmc -optimize -production -DCMK_NOT_USE_CONVERSE=1 ccs-client.c
../bin/charmc -optimize -production -o ../lib/libccs-client.a ccs-client.o
ar: creating ../lib/libccs-client.a
../bin/charmc -optimize -production -I. -c -o custom_partitioner.o custom_partitioner.C
../bin/charmc -optimize -production -I. -c -o set_partition_params.o set_partition_params.c
../bin/charmc -optimize -production -o ../lib/libconv-partition.a custom_partitioner.o set_partition_params.o
ar: creating ../lib/libconv-partition.a
if [ -f charmrun ] ; then ( cp -f charmrun ../bin ) ; fi
../bin/charmc -optimize -production -c global-elfgot.C -o ../lib/libglobal-swap.o || touch ../lib/libglobal-swap.o
../bin/charmc -optimize -production -c global-elfcopy.C -o ../lib/libglobal-copy.o || touch ../lib/libglobal-copy.o
../bin/charmc -optimize -production -c loadsym.c -o ../lib/loadsym.o || touch ../lib/loadsym.o
../bin/charmc -host conv-cpm.c
conv-cpm.flex:56:1: warning: return type defaults to 'int' [-Wimplicit-int]
yywrap(){ return(1); }
^
conv-cpm.flex:458:1: warning: return type defaults to 'int' [-Wimplicit-int]
main(int argc, char **argv)
^
../bin/charmc -host -language c -o conv-cpm -cp ../bin/ conv-cpm.o
../bin/charmc -optimize -production -c -I. charmf.C
../bin/charmc -optimize -production -c charmmod.f90 || touch charmmod.o
../bin/charmc -optimize -production -cpmod ../include charm.M
Appending .mod to object file name
../bin/charmc -optimize -production -o ../lib/libckf.a charmf.o charmmod.o || touch ../lib/libckf.a
ar: creating ../lib/libckf.a
../bin/charmc -optimize -production -I. -c -o main.o main.C
../bin/charmc -optimize -production -o ../lib/libckmain.a main.o
ar: creating ../lib/libckmain.a
/usr/bin/gmake -C libs/ck-libs/NDMeshStreamer
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
../../../../bin/charmc -optimize -production -c NDMeshStreamer.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o NDMeshStreamer.o NDMeshStreamer.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleNDMeshStreamer.a NDMeshStreamer.o
ar: creating ../../../../lib/libmoduleNDMeshStreamer.a
/bin/cp libmoduleNDMeshStreamer.dep ../../../../lib
/bin/cp NDMeshStreamer.decl.h ../../../../include
/bin/cp NDMeshStreamer.def.h ../../../../include
/bin/cp NDMeshStreamer.h ../../../../include
/bin/cp VirtualRouter.h ../../../../include
/bin/cp DataItemTypes.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/NDMeshStreamer'
/usr/bin/gmake -C libs/ck-libs/multicast
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
../../../../bin/charmc -optimize -production -c ckmulticast.ci
../../../../bin/charmc -optimize -production -I../../../../tmp -o ckmulticast.o ckmulticast.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkMulticast.a ckmulticast.o
ar: creating ../../../../lib/libmoduleCkMulticast.a
/bin/cp CkMulticast.decl.h ../../../../include
/bin/cp CkMulticast.def.h ../../../../include
/bin/cp ckmulticast.h ../../../../include
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/multicast'
/usr/bin/gmake -C libs/ck-libs/pythonCCS
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
(CHARMINC=../../../../include;. $CHARMINC/conv-config.sh; \
if test "$CMK_BUILD_PYTHON" != ""; then (/usr/bin/gmake conditional OPTS='-optimize -production ' || exit 1); fi)
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/pythonCCS'
/usr/bin/gmake -C libs/ck-libs/io
gmake[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../../../../bin/charmc -optimize -production -c ckio.ci
touch ckio.ci.stamp
cp ckio.h CkIO.decl.h CkIO.def.h CkIO_impl.decl.h CkIO_impl.def.h ../../../../include/
touch headers
../../../../bin/charmc -optimize -production -c ckio.C
../../../../bin/charmc -optimize -production -o ../../../../lib/libmoduleCkIO.a ckio.o
ar: creating ../../../../lib/libmoduleCkIO.a
gmake[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/tmp/libs/ck-libs/io'
../bin/charmc -optimize -production -I. -c -o MPIStrategy.o MPIStrategy.C
../bin/charmc -optimize -production -I. -c -o StreamingStrategy.o StreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o DummyStrategy.o DummyStrategy.C
../bin/charmc -optimize -production -I. -c -o NodeMulticast.o NodeMulticast.C
../bin/charmc -optimize -production -I. -c -o ChunkMulticastStrategy.o ChunkMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o OneTimeMulticastStrategy.o OneTimeMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o EachToManyMulticastStrategy.o EachToManyMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibSectionInfo.o ComlibSectionInfo.C
../bin/charmc -optimize -production -I. -c -o AAPLearner.o AAPLearner.C
../bin/charmc -optimize -production -I. -c -o ComlibStats.o ComlibStats.C
../bin/charmc -optimize -production -I. -c -o AAMLearner.o AAMLearner.C
../bin/charmc -optimize -production -I. -c -o MsgPacker.o MsgPacker.C
../bin/charmc -optimize -production -I. -c -o MulticastStrategy.o MulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o DirectMulticastStrategy.o DirectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o RingMulticastStrategy.o RingMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o MultiRingMulticast.o MultiRingMulticast.C
../bin/charmc -optimize -production -I. -c -o PipeBroadcastStrategy.o PipeBroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o MeshStreamingStrategy.o MeshStreamingStrategy.C
../bin/charmc -optimize -production -I. -c -o PrioStreaming.o PrioStreaming.C
../bin/charmc -optimize -production -I. -c -o BroadcastStrategy.o BroadcastStrategy.C
../bin/charmc -optimize -production -I. -c -o RectMulticastStrategy.o RectMulticastStrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibstrategy.o convcomlibstrategy.C
../bin/charmc -optimize -production -I. -c -o ComlibManager.o ComlibManager.C
../bin/charmc -optimize -production -I. -c -o ComlibStrategy.o ComlibStrategy.C
../bin/charmc -optimize -production -I. -c -o gridrouter.o gridrouter.C
../bin/charmc -optimize -production -I. -c -o hypercuberouter.o hypercuberouter.C
../bin/charmc -optimize -production -I. -c -o treerouter.o treerouter.C
../bin/charmc -optimize -production -I. -c -o petable.o petable.C
../bin/charmc -optimize -production -I. -c -o 3dgridrouter.o 3dgridrouter.C
../bin/charmc -optimize -production -I. -c -o graphrouter.o graphrouter.C
../bin/charmc -optimize -production -I. -c -o hypercubetopology.o hypercubetopology.C
../bin/charmc -optimize -production -I. -c -o routerstrategy.o routerstrategy.C
../bin/charmc -optimize -production -I. -c -o convcomlibmanager.o convcomlibmanager.C
../bin/charmc -optimize -production -I. -c -o pipebroadcastconverse.o pipebroadcastconverse.C
../bin/charmc -optimize -production -I. -c -o pipelinestrategy.o pipelinestrategy.C
../bin/charmc -optimize -production -I. -c -o prefixrouter.o prefixrouter.C
../bin/charmc -optimize -production -o ../lib/libmodulecomlib.a MPIStrategy.o StreamingStrategy.o DummyStrategy.o NodeMulticast.o ChunkMulticastStrategy.o OneTimeMulticastStrategy.o EachToManyMulticastStrategy.o ComlibSectionInfo.o AAPLearner.o ComlibStats.o AAMLearner.o MsgPacker.o MulticastStrategy.o DirectMulticastStrategy.o RingMulticastStrategy.o MultiRingMulticast.o PipeBroadcastStrategy.o MeshStreamingStrategy.o PrioStreaming.o BroadcastStrategy.o RectMulticastStrategy.o convcomlibstrategy.o ComlibManager.o ComlibStrategy.o gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libmodulecomlib.a
cp -f ../lib/libmodulecomlib.a ../lib/libmodulecommlib.a
../bin/charmc -optimize -production -o ../lib/libconvcom.a gridrouter.o hypercuberouter.o treerouter.o petable.o 3dgridrouter.o graphrouter.o hypercubetopology.o routerstrategy.o convcomlibmanager.o pipebroadcastconverse.o pipelinestrategy.o prefixrouter.o
ar: creating ../lib/libconvcom.a
../bin/charmc -optimize -production -I. -c -o mpi-mainmodule.o mpi-mainmodule.C
cp mpi-mainmodule.o ../lib
touch charm++
-------------------------------------------------
charm++ built successfully.
Next, try out a sample program like gni-crayxc/tests/charm++/simplearrayhello
cd ${SW_BLDDIR}/${NAMD_SRCDIR}
rm -rf CRAY-XT-g++
./config CRAY-XT-g++ --with-tcl --tcl-prefix $SW_BLDDIR \
--with-fftw3 --fftw-prefix $FFTW3_DIR \
--charm-base ${SW_BLDDIR}/${NAMD_SRCDIR}/${CHARM_SRCDIR} \
--charm-arch gni-crayxc
Selected arch file arch/CRAY-XT-g++.arch contains:
NAMD_ARCH = CRAY-XT
CHARMARCH = mpi-crayxt
#
# The GNU compilers produce significantly faster NAMD binaries than PGI.
#
# You must run the following to switch CC/cc to the GNU compiler
# environment before building either Charm++ or NAMD:
#
# module swap PrgEnv-pgi PrgEnv-gnu
#
# Users of psfgen might also need to do 'module remove acml' in order for
# the the psfgen compilation to succeed.
#
CXX = CC -DNOHOSTNAME -DNO_GETPWUID
CXXOPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
CC = cc
COPTS = -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer
#
# ensure that required modules are loaded
#
$(info $(NAMD_PLATFORM))
loaded_modules := $(subst :, ,$(LOADEDMODULES))
module := $(filter rca/%,$(loaded_modules))
ifeq (,$(module))
$(error module rca is not loaded)
else
$(info found module $(module))
endif
module := $(filter PrgEnv-gnu/%,$(loaded_modules))
ifeq (,$(module))
$(error module PrgEnv-gnu is not loaded)
else
$(info found module $(module))
endif
Creating directory: CRAY-XT-g++
Creating link: .. to .rootdir
Writing build options to CRAY-XT-g++/Make.config
Linking Makefile
Linking Make.depends
Linking src directory
Linking plugins directory
Linking psfgen directory
Generated CRAY-XT-g++/Make.config contains the following:
CHARMBASE = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1
include .rootdir/arch/CRAY-XT-g++.arch
CHARMARCH = gni-crayxc
CHARM = $(CHARMBASE)/$(CHARMARCH)
NAMD_PLATFORM = $(NAMD_ARCH)-ugni
include .rootdir/arch/$(NAMD_ARCH).base
include .rootdir/arch/$(NAMD_ARCH).tcl
include .rootdir/arch/$(NAMD_ARCH).fftw3
TCLDIR = /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0
FFTDIR = /opt/cray/fftw/3.3.4.11/interlagos
You are ready to run make in directory CRAY-XT-g++ now.
#-- specifying CC/cc causes segfault
#--charm-arch mpi-crayxc --cxx CC --cc cc
cd CRAY-XT-g++
make veryclean
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
rm -rf ptrepository Templates.DB SunWS_cache obj inc
rm -f namd2 psfgen sortreplicas flipdcd flipbinpdb charmrun
make
found module rca/1.0.0-2.0502.60530.1.63.gem
found module PrgEnv-gnu/5.2.82
if [ ! -d inc ]; then mkdir -p inc; fi
if [ ! -f inc/.exists ]; then touch inc/.exists; fi
if [ ! -d obj ]; then mkdir -p obj; fi
if [ ! -f obj/.exists ]; then touch obj/.exists; fi
cp src/Node.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Node.ci
rm -f inc/Node.ci
mv Node.def.h inc
mv Node.decl.h inc
cp src/PatchMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/PatchMgr.ci
rm -f inc/PatchMgr.ci
mv PatchMgr.def.h inc
mv PatchMgr.decl.h inc
cp src/ComputeMoaMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMoaMgr.ci
rm -f inc/ComputeMoaMgr.ci
mv ComputeMoaMgr.def.h inc
mv ComputeMoaMgr.decl.h inc
cp src/ComputeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMgr.ci
rm -f inc/ComputeMgr.ci
mv ComputeMgr.def.h inc
mv ComputeMgr.decl.h inc
cp src/WorkDistrib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/WorkDistrib.ci
rm -f inc/WorkDistrib.ci
mv WorkDistrib.def.h inc
mv WorkDistrib.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMoa.o -c src/ComputeMoa.C
cp src/ComputeMsmMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmMgr.ci
rm -f inc/ComputeMsmMgr.ci
mv ComputeMsmMgr.def.h inc
mv ComputeMsmMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsm.o -c src/ComputeMsm.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C
cp src/ComputeMsmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeMsmSerialMgr.ci
rm -f inc/ComputeMsmSerialMgr.ci
mv ComputeMsmSerialMgr.def.h inc
mv ComputeMsmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C
cp src/ComputeFmmSerialMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeFmmSerialMgr.ci
rm -f inc/ComputeFmmSerialMgr.ci
mv ComputeFmmSerialMgr.def.h inc
mv ComputeFmmSerialMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm.o -c src/msm.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng.o -c src/msm_longrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_setup.o -c src/msm_setup.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng.o -c src/msm_shortrng.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/wkfutils.o -c src/wkfutils.c
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/common.o -c src/common.C
src/common.C: In function 'void NAMD_err(const char*)':
src/common.C:100:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'int NAMD_file_exists(const char*)':
src/common.C:137:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
src/common.C: In function 'void NAMD_backup_file(const char*, const char*)':
src/common.C:166:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if ( ! sys_err_msg ) sys_err_msg = "(unknown error)";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdlib.o -c src/dcdlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/erf.o -c src/erf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fitrms.o -c src/fitrms.C
cp src/main.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/main.ci
Charmxi> 11: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented.
rm -f inc/main.ci
mv main.def.h inc
mv main.decl.h inc
cp src/ReductionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ReductionMgr.ci
rm -f inc/ReductionMgr.ci
mv ReductionMgr.def.h inc
mv ReductionMgr.decl.h inc
cp src/ProxyMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ProxyMgr.ci
rm -f inc/ProxyMgr.ci
mv ProxyMgr.def.h inc
mv ProxyMgr.decl.h inc
cp src/LdbCoordinator.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/LdbCoordinator.ci
rm -f inc/LdbCoordinator.ci
mv LdbCoordinator.def.h inc
mv LdbCoordinator.decl.h inc
cp src/NamdCentLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdCentLB.ci
rm -f inc/NamdCentLB.ci
mv NamdCentLB.def.h inc
mv NamdCentLB.decl.h inc
cp src/NamdNborLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdNborLB.ci
rm -f inc/NamdNborLB.ci
mv NamdNborLB.def.h inc
mv NamdNborLB.decl.h inc
cp src/NamdHybridLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdHybridLB.ci
rm -f inc/NamdHybridLB.ci
mv NamdHybridLB.def.h inc
mv NamdHybridLB.decl.h inc
cp src/NamdDummyLB.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/NamdDummyLB.ci
rm -f inc/NamdDummyLB.ci
mv NamdDummyLB.def.h inc
mv NamdDummyLB.decl.h inc
cp src/ComputePmeMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputePmeMgr.ci
rm -f inc/ComputePmeMgr.ci
mv ComputePmeMgr.def.h inc
mv ComputePmeMgr.decl.h inc
cp src/OptPme.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/OptPme.ci
rm -f inc/OptPme.ci
mv OptPmeMgr.def.h inc
mv OptPmeMgr.decl.h inc
cp src/fftlib.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/fftlib.ci
rm -f inc/fftlib.ci
mv PmeFFTLib.def.h inc
mv PmeFFTLib.decl.h inc
cp src/ComputeExtMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeExtMgr.ci
rm -f inc/ComputeExtMgr.ci
mv ComputeExtMgr.def.h inc
mv ComputeExtMgr.decl.h inc
cp src/ComputeGBISserMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGBISserMgr.ci
rm -f inc/ComputeGBISserMgr.ci
mv ComputeGBISserMgr.def.h inc
mv ComputeGBISserMgr.decl.h inc
cp src/CollectionMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMgr.ci
rm -f inc/CollectionMgr.ci
mv CollectionMgr.def.h inc
mv CollectionMgr.decl.h inc
cp src/CollectionMaster.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/CollectionMaster.ci
rm -f inc/CollectionMaster.ci
mv CollectionMaster.def.h inc
mv CollectionMaster.decl.h inc
cp src/BroadcastMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/BroadcastMgr.ci
rm -f inc/BroadcastMgr.ci
mv BroadcastMgr.def.h inc
mv BroadcastMgr.decl.h inc
cp src/Sync.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/Sync.ci
rm -f inc/Sync.ci
mv Sync.def.h inc
mv Sync.decl.h inc
cp src/ParallelIOMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ParallelIOMgr.ci
rm -f inc/ParallelIOMgr.ci
mv ParallelIOMgr.def.h inc
mv ParallelIOMgr.decl.h inc
cp src/DataExchanger.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/DataExchanger.ci
rm -f inc/DataExchanger.ci
mv DataExchanger.def.h inc
mv DataExchanger.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/main.o -c src/main.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/mainfunc.o -c src/mainfunc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/memusage.o -c src/memusage.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/strlib.o -c src/strlib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgSeven.o -c src/AlgSeven.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgRecBisection.o -c src/AlgRecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AlgNbor.o -c src/AlgNbor.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/AtomMap.o -c src/AtomMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BackEnd.o -c src/BackEnd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastMgr.o -c src/BroadcastMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/BroadcastClient.o -c src/BroadcastClient.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMaster.o -c src/CollectionMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CollectionMgr.o -c src/CollectionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Communicate.o -c src/Communicate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Compute.o -c src/Compute.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAngles.o -c src/ComputeAngles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeAniso.o -c src/ComputeAniso.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeBonds.o -c src/ComputeBonds.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForce.o -c src/ComputeConsForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPME.o -c src/ComputeDPME.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEField.o -c src/ComputeEField.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeEwald.o -c src/ComputeEwald.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeExt.o -c src/ComputeExt.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBISser.o -c src/ComputeGBISser.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGBIS.o -c src/ComputeGBIS.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeLCPO.o -c src/ComputeLCPO.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeImpropers.o -c src/ComputeImpropers.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobal.o -c src/ComputeGlobal.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeGridForce.o -c src/ComputeGridForce.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMap.o -c src/ComputeMap.C
src/ComputeMap.C: In member function 'void ComputeMap::printComputeMap()':
src/ComputeMap.C:232:7: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
fname = "computeMap.orig";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeMgr.o -c src/ComputeMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C
In file included from src/ComputeNonbondedMICKernelBase2.h:218:0,
from src/ComputeNonbondedMICKernelBase.h:1555,
from src/ComputeNonbondedMICKernel.C:2645:
src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space
pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatch.o -c src/ComputePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePatchPair.o -c src/ComputePatchPair.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputePme.o -c src/ComputePme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPme.o -c src/OptPme.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeRestraints.o -c src/ComputeRestraints.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeStir.o -c src/ComputeStir.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeTclBC.o -c src/ComputeTclBC.C
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)':
src/ComputeTclBC.C:145:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C:156:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:166:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:184:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:196:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:236:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:241:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:272:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:315:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:320:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:332:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:337:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:349:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:354:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:366:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:378:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/ComputeTclBC.C:384:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no atom available",TCL_VOLATILE);
^
src/ComputeTclBC.C: In static member function 'static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/ComputeTclBC.C:398:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ComputeTclBC.C:404:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ComputeThole.o -c src/ComputeThole.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ConfigList.o -c src/ConfigList.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Controller.o -c src/Controller.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ccsinterface.o -c src/ccsinterface.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataStream.o -c src/DataStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DumpBench.o -c src/DumpBench.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C
src/FreeEnergyRestrain.C: In member function 'void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:205:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);};
^
src/FreeEnergyRestrain.C:213:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
src/FreeEnergyRestrain.C:218:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);}
^
src/FreeEnergyRestrain.C: In member function 'void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)':
src/FreeEnergyRestrain.C:247:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);}
^
src/FreeEnergyRestrain.C:251:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/fstream_namd.o -c src/fstream_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMaster.o -c src/GlobalMaster.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:44:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:58:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"atom not found",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:74:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:100:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:150:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:163:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)':
src/GlobalMasterTcl.C:179:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:193:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:265:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:307:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:365:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C: In static member function 'static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/GlobalMasterTcl.C:410:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:429:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE);
^
src/GlobalMasterTcl.C:437:72: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvar.o -c src/colvar.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvaratoms.o -c src/colvaratoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias.o -c src/colvarbias.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_abf.o -c src/colvarbias_abf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_alb.o -c src/colvarbias_alb.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_meta.o -c src/colvarbias_meta.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp.o -c src/colvarcomp.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvargrid.o -c src/colvargrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarmodule.o -c src/colvarmodule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarparse.o -c src/colvarparse.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarscript.o -c src/colvarscript.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvartypes.o -c src/colvartypes.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/colvarvalue.o -c src/colvarvalue.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GridForceGrid.o -c src/GridForceGrid.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GromacsTopFile.o -c src/GromacsTopFile.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/heap.o -c src/heap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/HomePatch.o -c src/HomePatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/IMDOutput.o -c src/IMDOutput.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/InfoStream.o -c src/InfoStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LdbCoordinator.o -c src/LdbCoordinator.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/LJTable.o -c src/LJTable.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Measure.o -c src/Measure.C
src/Measure.C: In function 'int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)':
src/Measure.C:114:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MGridforceParams.o -c src/MGridforceParams.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MStream.o -c src/MStream.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule.o -c src/Molecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Molecule2.o -c src/Molecule2.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/GoMolecule.o -c src/GoMolecule.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdCentLB.o -c src/NamdCentLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdNborLB.o -c src/NamdNborLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdHybridLB.o -c src/NamdHybridLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdDummyLB.o -c src/NamdDummyLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdState.o -c src/NamdState.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/NamdOneTools.o -c src/NamdOneTools.C
cp src/ComputeGridForceMgr.ci inc
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc inc/ComputeGridForceMgr.ci
rm -f inc/ComputeGridForceMgr.ci
mv ComputeGridForceMgr.def.h inc
mv ComputeGridForceMgr.decl.h inc
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Node.o -c src/Node.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Output.o -c src/Output.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Parameters.o -c src/Parameters.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParseOptions.o -c src/ParseOptions.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Patch.o -c src/Patch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMgr.o -c src/PatchMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PatchMap.o -c src/PatchMap.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDB.o -c src/PDB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PDBData.o -c src/PDBData.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeKSpace.o -c src/PmeKSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PmeRealSpace.o -c src/PmeRealSpace.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyMgr.o -c src/ProxyMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ProxyPatch.o -c src/ProxyPatch.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Rebalancer.o -c src/Rebalancer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RecBisection.o -c src/RecBisection.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ReductionMgr.o -c src/ReductionMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineOnly.o -c src/RefineOnly.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/RefineTorusLB.o -c src/RefineTorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ScriptTcl.o -c src/ScriptTcl.C
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:165:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:174:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:183:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:192:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:201:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:211:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:240:56: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:253:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"args: source",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:274:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:287:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:291:75: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:296:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:302:74: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:345:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:349:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C:354:61: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:382:95: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE);
^
src/ScriptTcl.C:386:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C:392:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:429:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:505:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C:520:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:530:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:557:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:565:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:570:71: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:580:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:588:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:592:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE);
^
src/ScriptTcl.C:596:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE);
^
src/ScriptTcl.C:600:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:610:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:618:58: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:628:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:634:64: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:646:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE);
^
src/ScriptTcl.C:655:65: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"parameter value too long",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:674:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:691:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:708:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:712:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:721:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not norepeat",TCL_VOLATILE);
^
src/ScriptTcl.C:731:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:736:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:740:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:766:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:774:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE);
^
src/ScriptTcl.C:779:90: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C:783:92: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:808:55: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE);
^
src/ScriptTcl.C:820:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:839:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:847:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"syntax is 'move <id> to|by {<x> <y> <z>}'",TCL_VOLATILE);
^
src/ScriptTcl.C:857:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:885:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too few args",TCL_VOLATILE);
^
src/ScriptTcl.C:889:54: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"too many args",TCL_VOLATILE);
^
src/ScriptTcl.C:894:59: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"file name too long",TCL_VOLATILE);
^
src/ScriptTcl.C:907:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
"first arg not withforces or onlyforces",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:946:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:973:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:978:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C:990:82: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE);
^
src/ScriptTcl.C:1002:69: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1015:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1020:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1066:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C:1071:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1088:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1113:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1127:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1140:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
src/ScriptTcl.C: In static member function 'static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)':
src/ScriptTcl.C:1174:53: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE);
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sequencer.o -c src/Sequencer.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Set.o -c src/Set.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Settle.o -c src/Settle.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SimParameters.o -c src/SimParameters.C
src/SimParameters.C: In member function 'void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)':
src/SimParameters.C:5384:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case CUBIC: approx_str = "C1 CUBIC"; break;
^
src/SimParameters.C:5385:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC: approx_str = "C1 QUINTIC"; break;
^
src/SimParameters.C:5386:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case QUINTIC2: approx_str = "C2 QUINTIC"; break;
^
src/SimParameters.C:5387:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC: approx_str = "C1 SEPTIC"; break;
^
src/SimParameters.C:5388:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case SEPTIC3: approx_str = "C3 SEPTIC"; break;
^
src/SimParameters.C:5389:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC: approx_str = "C1 NONIC"; break;
^
src/SimParameters.C:5390:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case NONIC4: approx_str = "C4 NONIC"; break;
^
src/SimParameters.C:5391:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case C1HERMITE:approx_str = "C1 HERMITE"; break;
^
src/SimParameters.C:5392:34: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: approx_str = "UNKNOWN"; break;
^
src/SimParameters.C:5395:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR2: split_str = "C2 TAYLOR"; break;
^
src/SimParameters.C:5396:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR3: split_str = "C3 TAYLOR"; break;
^
src/SimParameters.C:5397:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR4: split_str = "C4 TAYLOR"; break;
^
src/SimParameters.C:5398:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR5: split_str = "C5 TAYLOR"; break;
^
src/SimParameters.C:5399:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR6: split_str = "C6 TAYLOR"; break;
^
src/SimParameters.C:5400:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR7: split_str = "C7 TAYLOR"; break;
^
src/SimParameters.C:5401:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
case TAYLOR8: split_str = "C8 TAYLOR"; break;
^
src/SimParameters.C:5402:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
default: split_str = "UNKNOWN"; break;
^
In file included from src/SimParameters.h:21:0,
from src/GridForceGrid.h:14,
from src/Molecule.h:31,
from src/ComputeNonbondedUtil.h:16,
from src/SimParameters.C:21:
src/SimParameters.C: In member function 'void SimParameters::parse_mgrid_params(ConfigList*)':
src/MGridforceParams.h:18:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
#define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams"
^
src/SimParameters.C:5637:25: note: in expansion of macro 'MGRIDFORCEPARAMS_DEFAULTKEY'
char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY;
^
src/SimParameters.C: In member function 'void SimParameters::print_mgrid_params()':
src/SimParameters.C:6054:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char *qcol_msg = "Use atom charge";
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/SortAtoms.o -c src/SortAtoms.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/Sync.o -c src/Sync.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TclCommands.o -c src/TclCommands.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/TorusLB.o -c src/TorusLB.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/WorkDistrib.o -c src/WorkDistrib.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pub3dfft.o -c src/pub3dfft.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/vmdsock.o -c src/vmdsock.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/parm.o -c src/parm.C
src/parm.C: In member function 'int parm::readparm(char*)':
src/parm.C:184:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TITLE"))
^
src/parm.C:194:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"POINTERS"))
^
src/parm.C:318:31: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ATOM_NAME"))
^
src/parm.C:332:28: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"CHARGE"))
^
src/parm.C:350:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"MASS"))
^
src/parm.C:368:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOM_TYPE_INDEX"))
^
src/parm.C:389:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NUMBER_EXCLUDED_ATOMS"))
^
src/parm.C:410:43: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"NONBONDED_PARM_INDEX"))
^
src/parm.C:431:35: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"RESIDUE_LABEL"))
^
src/parm.C:443:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"RESIDUE_POINTER"))
^
src/parm.C:465:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_FORCE_CONSTANT"))
^
src/parm.C:483:38: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOND_EQUIL_VALUE"))
^
src/parm.C:501:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_FORCE_CONSTANT"))
^
src/parm.C:519:39: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"ANGLE_EQUIL_VALUE"))
^
src/parm.C:537:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT"))
^
src/parm.C:555:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PERIODICITY"))
^
src/parm.C:573:36: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"DIHEDRAL_PHASE"))
^
src/parm.C:591:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"SOLTY"))
^
src/parm.C:610:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_ACOEF"))
^
src/parm.C:629:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"LENNARD_JONES_BCOEF"))
^
src/parm.C:650:41: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_INC_HYDROGEN"))
^
src/parm.C:682:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"BONDS_WITHOUT_HYDROGEN"))
^
src/parm.C:715:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_INC_HYDROGEN"))
^
src/parm.C:750:46: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN"))
^
src/parm.C:786:45: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_INC_HYDROGEN"))
^
src/parm.C:823:49: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN"))
^
src/parm.C:855:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"EXCLUDED_ATOMS_LIST"))
^
src/parm.C:876:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_ACOEF"))
^
src/parm.C:894:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBOND_BCOEF"))
^
src/parm.C:912:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"HBCUT"))
^
src/parm.C:933:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"AMBER_ATOM_TYPE"))
^
src/parm.C:945:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"TREE_CHAIN_CLASSIFICATION"))
^
src/parm.C:957:33: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"JOIN_ARRAY"))
^
src/parm.C:980:29: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"IROTAT"))
^
src/parm.C:1009:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"SOLVENT_POINTERS"))
^
src/parm.C:1034:42: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
{ if (!moveto(file,"ATOMS_PER_MOLECULE"))
^
src/parm.C:1050:37: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (!moveto(file,"BOX_DIMENSIONS"))
^
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/imd.o -c src/imd.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/CompressPsf.o -c src/CompressPsf.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/PluginIOMgr.o -c src/PluginIOMgr.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/DataExchanger.o -c src/DataExchanger.C
CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c
cc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c
rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"bwjenkins\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; CC -DNOHOSTNAME -DNO_GETPWUID -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -I/opt/cray/fftw/3.3.4.11/interlagos/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -o obj/buildinfo.o -c obj/buildinfo.C
const char *namd_build_date = "Mon Dec 13 22:44:42 CST 2021";
const char *namd_build_user = "bwjenkins";
const char *namd_build_machine = "jyc1";
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmc -verbose -ld++-option \
'-I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer ' \
"-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast" -language charm++ \
obj/buildinfo.o \
obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o \
\
\
\
\
\
-L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl \
-L/opt/cray/fftw/3.3.4.11/interlagos/lib/lib -lfftw3f \
obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \
\
\
-lm -o namd2
Verbose mode set
Adding file obj/buildinfo.o...
Adding file obj/ComputeMoa.o...
Adding file obj/ComputeMsm.o...
Adding file obj/ComputeMsmMsa.o...
Adding file obj/ComputeMsmSerial.o...
Adding file obj/ComputeFmmSerial.o...
Adding file obj/msm.o...
Adding file obj/msm_longrng.o...
Adding file obj/msm_longrng_sprec.o...
Adding file obj/msm_setup.o...
Adding file obj/msm_shortrng.o...
Adding file obj/msm_shortrng_sprec.o...
Adding file obj/wkfutils.o...
Adding file obj/common.o...
Adding file obj/dcdlib.o...
Adding file obj/erf.o...
Adding file obj/fitrms.o...
Adding file obj/main.o...
Adding file obj/mainfunc.o...
Adding file obj/memusage.o...
Adding file obj/strlib.o...
Adding file obj/AlgSeven.o...
Adding file obj/AlgRecBisection.o...
Adding file obj/AlgNbor.o...
Adding file obj/AtomMap.o...
Adding file obj/BackEnd.o...
Adding file obj/BroadcastMgr.o...
Adding file obj/BroadcastClient.o...
Adding file obj/CollectionMaster.o...
Adding file obj/CollectionMgr.o...
Adding file obj/Communicate.o...
Adding file obj/Compute.o...
Adding file obj/ComputeAngles.o...
Adding file obj/ComputeAniso.o...
Adding file obj/ComputeBonds.o...
Adding file obj/ComputeConsForce.o...
Adding file obj/ComputeConsForceMsgs.o...
Adding file obj/ComputeCrossterms.o...
Adding file obj/ComputeCylindricalBC.o...
Adding file obj/ComputeDihedrals.o...
Adding file obj/ComputeDPME.o...
Adding file obj/ComputeDPMEMsgs.o...
Adding file obj/ComputeDPMTA.o...
Adding file obj/ComputeEField.o...
Adding file obj/ComputeEwald.o...
Adding file obj/ComputeExt.o...
Adding file obj/ComputeGBISser.o...
Adding file obj/ComputeGBIS.o...
Adding file obj/ComputeGromacsPair.o...
Adding file obj/ComputeLCPO.o...
Adding file obj/ComputeFullDirect.o...
Adding file obj/ComputeHomePatch.o...
Adding file obj/ComputeHomePatches.o...
Adding file obj/ComputeImpropers.o...
Adding file obj/ComputeGlobal.o...
Adding file obj/ComputeGlobalMsgs.o...
Adding file obj/ComputeGridForce.o...
Adding file obj/ComputeMap.o...
Adding file obj/ComputeMgr.o...
Adding file obj/ComputeNonbondedSelf.o...
Adding file obj/ComputeNonbondedPair.o...
Adding file obj/ComputeNonbondedUtil.o...
Adding file obj/ComputeNonbondedStd.o...
Adding file obj/ComputeNonbondedFEP.o...
Adding file obj/ComputeNonbondedGo.o...
Adding file obj/ComputeNonbondedTI.o...
Adding file obj/ComputeNonbondedLES.o...
Adding file obj/ComputeNonbondedPProf.o...
Adding file obj/ComputeNonbondedTabEnergies.o...
Adding file obj/ComputeNonbondedCUDA.o...
Adding file obj/ComputeNonbondedCUDAExcl.o...
Adding file obj/ComputeNonbondedMIC.o...
Adding file obj/ComputeNonbondedMICKernel.o...
Adding file obj/ComputePatch.o...
Adding file obj/ComputePatchPair.o...
Adding file obj/ComputePme.o...
Adding file obj/OptPme.o...
Adding file obj/OptPmeRealSpace.o...
Adding file obj/ComputeRestraints.o...
Adding file obj/ComputeSphericalBC.o...
Adding file obj/ComputeStir.o...
Adding file obj/ComputeTclBC.o...
Adding file obj/ComputeThole.o...
Adding file obj/ConfigList.o...
Adding file obj/Controller.o...
Adding file obj/ccsinterface.o...
Adding file obj/DataStream.o...
Adding file obj/DumpBench.o...
Adding file obj/FreeEnergyAssert.o...
Adding file obj/FreeEnergyGroup.o...
Adding file obj/FreeEnergyLambda.o...
Adding file obj/FreeEnergyLambdMgr.o...
Adding file obj/FreeEnergyParse.o...
Adding file obj/FreeEnergyRestrain.o...
Adding file obj/FreeEnergyRMgr.o...
Adding file obj/FreeEnergyVector.o...
Adding file obj/fstream_namd.o...
Adding file obj/GlobalMaster.o...
Adding file obj/GlobalMasterServer.o...
Adding file obj/GlobalMasterTest.o...
Adding file obj/GlobalMasterIMD.o...
Adding file obj/GlobalMasterTcl.o...
Adding file obj/GlobalMasterSMD.o...
Adding file obj/GlobalMasterTMD.o...
Adding file obj/Matrix4Symmetry.o...
Adding file obj/GlobalMasterSymmetry.o...
Adding file obj/GlobalMasterFreeEnergy.o...
Adding file obj/GlobalMasterEasy.o...
Adding file obj/GlobalMasterMisc.o...
Adding file obj/colvar.o...
Adding file obj/colvaratoms.o...
Adding file obj/colvarbias.o...
Adding file obj/colvarbias_abf.o...
Adding file obj/colvarbias_alb.o...
Adding file obj/colvarbias_meta.o...
Adding file obj/colvarbias_restraint.o...
Adding file obj/colvarcomp.o...
Adding file obj/colvarcomp_angles.o...
Adding file obj/colvarcomp_coordnums.o...
Adding file obj/colvarcomp_distances.o...
Adding file obj/colvarcomp_protein.o...
Adding file obj/colvarcomp_rotations.o...
Adding file obj/colvargrid.o...
Adding file obj/colvarmodule.o...
Adding file obj/colvarparse.o...
Adding file obj/colvarproxy_namd.o...
Adding file obj/colvarscript.o...
Adding file obj/colvartypes.o...
Adding file obj/colvarvalue.o...
Adding file obj/GridForceGrid.o...
Adding file obj/GromacsTopFile.o...
Adding file obj/heap.o...
Adding file obj/HomePatch.o...
Adding file obj/IMDOutput.o...
Adding file obj/InfoStream.o...
Adding file obj/LdbCoordinator.o...
Adding file obj/LJTable.o...
Adding file obj/Measure.o...
Adding file obj/MGridforceParams.o...
Adding file obj/MStream.o...
Adding file obj/MigrateAtomsMsg.o...
Adding file obj/Molecule.o...
Adding file obj/Molecule2.o...
Adding file obj/GoMolecule.o...
Adding file obj/NamdCentLB.o...
Adding file obj/NamdNborLB.o...
Adding file obj/NamdHybridLB.o...
Adding file obj/NamdDummyLB.o...
Adding file obj/NamdState.o...
Adding file obj/NamdOneTools.o...
Adding file obj/Node.o...
Adding file obj/Output.o...
Adding file obj/Parameters.o...
Adding file obj/ParseOptions.o...
Adding file obj/Patch.o...
Adding file obj/PatchMgr.o...
Adding file obj/PatchMap.o...
Adding file obj/PDB.o...
Adding file obj/PDBData.o...
Adding file obj/PmeKSpace.o...
Adding file obj/PmeRealSpace.o...
Adding file obj/ProcessorPrivate.o...
Adding file obj/ProxyMgr.o...
Adding file obj/ProxyPatch.o...
Adding file obj/Rebalancer.o...
Adding file obj/RecBisection.o...
Adding file obj/ReductionMgr.o...
Adding file obj/RefineOnly.o...
Adding file obj/RefineTorusLB.o...
Adding file obj/ScriptTcl.o...
Adding file obj/Sequencer.o...
Adding file obj/Set.o...
Adding file obj/Settle.o...
Adding file obj/SimParameters.o...
Adding file obj/SortAtoms.o...
Adding file obj/Sync.o...
Adding file obj/TclCommands.o...
Adding file obj/TorusLB.o...
Adding file obj/WorkDistrib.o...
Adding file obj/pub3dfft.o...
Adding file obj/vmdsock.o...
Adding file obj/parm.o...
Adding file obj/imd.o...
Adding file obj/CompressPsf.o...
Adding file obj/PluginIOMgr.o...
Adding file obj/DataExchanger.o...
Adding file obj/ParallelIOMgr.o...
Adding file obj/dcdplugin.o...
Adding file obj/jsplugin.o...
Adding file obj/namdbinplugin.o...
Adding file obj/pdbplugin.o...
Adding file obj/psfplugin.o...
OpenMP support not enabled
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete ------------
Adding registration for module NeighborLB
Adding registration for module HybridLB
Adding registration for module RefineLB
Adding registration for module GreedyLB
Adding registration for module CkMulticast
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -U_FORTIFY_SOURCE -c moduleinit15841.C -o moduleinit15841.o
charmc> All libraries are: -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit15841.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing CC -I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I/opt/cray/pmi/5.0.11/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I/opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I/opt/cray/krca/1.0.0-2.0502.67049.8.30.gem/include -I/opt/cray-hss-devel/7.2.0/include -I/opt/cray/gni-headers/4.0-1.0502.10859.9.27.gem/include -I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -rdynamic -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -L/opt/cray/fftw/3.3.4.11/interlagos/lib/lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/include -o namd2 -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../include /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libldb-rand.o obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit15841.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libmemory-default.o /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/../lib/libthreads-default.o -lckmain -lck -lconv-cplus-y -lconv-core -lconv-util -lconv-partition -lckqt -ldl -lrt -ltcl8.5 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lm
charmc: Executing rm -f charmrun
charmc: Executing cp -p /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
rm -f moduleinit15841.C moduleinit15841.o
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_main.o -c sb/src/tcl_main.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/tcl_psfgen.o -c sb/src/tcl_psfgen.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_file.o -c sb/src/charmm_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/charmm_parse_topo_defs.o -c sb/src/charmm_parse_topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/extract_alias.o -c sb/src/extract_alias.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hash.o -c sb/src/hash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/hasharray.o -c sb/src/hasharray.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/memarena.o -c sb/src/memarena.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file.o -c sb/src/pdb_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/pdb_file_extract.o -c sb/src/pdb_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file.o -c sb/src/psf_file.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/psf_file_extract.o -c sb/src/psf_file_extract.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_defs.o -c sb/src/topo_defs.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol.o -c sb/src/topo_mol.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_output.o -c sb/src/topo_mol_output.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/topo_mol_pluginio.o -c sb/src/topo_mol_pluginio.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/stringhash.o -c sb/src/stringhash.c
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o psfgen obj/tcl_main.o obj/tcl_psfgen.o obj/charmm_file.o obj/charmm_parse_topo_defs.o obj/extract_alias.o obj/hash.o obj/hasharray.o obj/memarena.o obj/pdb_file.o obj/pdb_file_extract.o obj/psf_file.o obj/psf_file_extract.o obj/topo_defs.o obj/topo_mol.o obj/topo_mol_output.o obj/topo_mol_pluginio.o obj/stringhash.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -L/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/lib -ltcl8.5 -ldl -lm
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o obj/sortreplicas.o -c src/sortreplicas.c
src/sortreplicas.c: In function 'main':
src/sortreplicas.c:52:5: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/sortreplicas.c:52:5: warning: incompatible implicit declaration of built-in function 'exit'
src/sortreplicas.c:52:5: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:55:18: warning: implicit declaration of function 'atoi' [-Wimplicit-function-declaration]
num_replicas = atoi(argv[2]);
^
src/sortreplicas.c:85:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:85:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:92:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:92:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:102:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:102:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:110:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:110:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:131:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:131:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:138:7: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:138:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:146:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:146:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:172:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:172:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:178:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:178:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:188:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:188:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:193:9: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:193:9: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:219:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:219:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:225:11: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/sortreplicas.c:225:11: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/sortreplicas.c:259:3: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration]
free(frame.coords);
^
src/sortreplicas.c:259:3: warning: incompatible implicit declaration of built-in function 'free'
src/sortreplicas.c:259:3: note: include '<stdlib.h>' or provide a declaration of 'free'
src/sortreplicas.c:281:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/sortreplicas.c:281:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
cc -Isb/src -Iplugins/include -DSTATIC_PLUGIN -DPSFGEN_USEPLUGINS -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o sortreplicas obj/sortreplicas.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o -lm
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipdcd src/flipdcd.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipdcd; \
chmod +x flipdcd
src/flipdcd.c: In function 'main':
src/flipdcd.c:42:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipdcd.c:42:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipdcd.c:42:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipdcd.c:47:9: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration]
if ((strncmp(argv[argcount],"-S",2) == 0) || (strncmp(argv[argcount],"-s",2) == 0)){
^
cc -Isrc -I/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/include -DNAMD_TCL -O3 -ffast-math -fexpensive-optimizations -fomit-frame-pointer -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"CRAY-XT-ugni\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -o flipbinpdb src/flipbinpdb.c || \
echo "#!/bin/sh\necho unavailable on this platform" > flipbinpdb; \
chmod +x flipbinpdb
src/flipbinpdb.c: In function 'main':
src/flipbinpdb.c:30:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
exit(-1);
^
src/flipbinpdb.c:30:3: warning: incompatible implicit declaration of built-in function 'exit'
src/flipbinpdb.c:30:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:35:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:35:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:40:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:40:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:47:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:47:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:53:3: warning: incompatible implicit declaration of built-in function 'exit'
exit(-1);
^
src/flipbinpdb.c:53:3: note: include '<stdlib.h>' or provide a declaration of 'exit'
src/flipbinpdb.c:64:1: warning: incompatible implicit declaration of built-in function 'exit'
exit(0);
^
src/flipbinpdb.c:64:1: note: include '<stdlib.h>' or provide a declaration of 'exit'
cp /scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/NAMD_2.10_Source/charm-6.6.1/gni-crayxc/bin/charmrun charmrun
if [ $? -ne 0 ] ; then
echo "$PACKAGE make failed"
exit 1
fi
mkdir $SW_BLDDIR/bin
mkdir: cannot create directory `/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/bin': File exists
cp namd2 $SW_BLDDIR/bin
cp charmrun $SW_BLDDIR/bin
cp flipbinpdb $SW_BLDDIR/bin
cp flipdcd $SW_BLDDIR/bin
cp psfgen $SW_BLDDIR/bin
cd ../
############################### if this far, return 0
exit 0
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/rebuild : passed (0)
[SSH] completed
[SSH] exit-status: 0
[SSH] script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_ROOT="/scratch/system/bwjenkins/tests"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"
echo $PATH $SW_CONFIG $PYTHONPATH SW_WORKDIR > /dev/null
export SW_CONFIG=$SW_CONFIG
export SW_WORKDIR=$SW_WORKDIR
cd $SW_ROOT
cd namd/2.10/cle5.2_gnu5.1.0
swtestwait
pwd
chmod -R 755 $SW_ROOT
# recalculate the cputime memory and wallclock file contents since the retest script is broken
~arnoldg/namd/findvals.sh
ls -lt
[SSH] executing...
Waiting for job 598345.jyc to start ...
Submitted job 598345.jyc is running. Following .running ...
598345.jyc
Charm++> Running on Gemini (GNI) with 4 processes
Charm++> static SMSG
Charm++> SMSG memory: 19.8KB
Charm++> memory pool init block size: 8MB, total memory pool limit 0MB (0 means no limit)
Charm++> memory pool registered memory limit: 200000MB, send limit: 100000MB
Charm++> Cray TLB page size: 2048K
Charm++> Running in non-SMP mode: numPes 4
Charm++> Using recursive bisection (scheme 3) for topology aware partitions
Converse/Charm++ Commit ID: v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (32-way SMP).
Info: NAMD 2.10 for CRAY-XT-ugni
Info:
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info:
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info:
Info: Based on Charm++/Converse 60601 for gni-crayxc
Info: Built Mon Dec 13 22:44:42 CST 2021 by bwjenkins on jyc1
Info: Running on 4 processors, 4 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.00586599 s
Info: 3103.79 MB of memory in use based on /proc/self/stat
Info: Configuration file is apoa1.namd
Info: Working in the current directory /mnt/abc/scratch/system/bwjenkins/sw_workdir/retest/2021-12-13T22:45:22.243879/namd_2.10_cle5.2_gnu5.1.0
TCL: Suspending until startup complete.
Info: SIMULATION PARAMETERS:
Info: TIMESTEP 1
Info: NUMBER OF STEPS 500
Info: STEPS PER CYCLE 20
Info: PERIODIC CELL BASIS 1 108.861 0 0
Info: PERIODIC CELL BASIS 2 0 108.861 0
Info: PERIODIC CELL BASIS 3 0 0 77.758
Info: PERIODIC CELL CENTER 0 0 0
Info: LOAD BALANCER Centralized
Info: LOAD BALANCING STRATEGY New Load Balancers -- DEFAULT
Info: LDB PERIOD 4000 steps
Info: FIRST LDB TIMESTEP 100
Info: LAST LDB TIMESTEP -1
Info: LDB BACKGROUND SCALING 1
Info: HOM BACKGROUND SCALING 1
Info: PME BACKGROUND SCALING 1
Info: MIN ATOMS PER PATCH 40
Info: INITIAL TEMPERATURE 300
Info: CENTER OF MASS MOVING INITIALLY? NO
Info: DIELECTRIC 1
Info: EXCLUDE SCALED ONE-FOUR
Info: 1-4 ELECTROSTATICS SCALED BY 1
Info: MODIFIED 1-4 VDW PARAMETERS WILL BE USED
Info: NO DCD TRAJECTORY OUTPUT
Info: NO EXTENDED SYSTEM TRAJECTORY OUTPUT
Info: NO VELOCITY DCD OUTPUT
Info: NO FORCE DCD OUTPUT
Info: OUTPUT FILENAME /usr/tmp/apoa1-out
Info: BINARY OUTPUT FILES WILL BE USED
Info: NO RESTART FILE
Info: SWITCHING ACTIVE
Info: SWITCHING ON 10
Info: SWITCHING OFF 12
Info: PAIRLIST DISTANCE 13.5
Info: PAIRLIST SHRINK RATE 0.01
Info: PAIRLIST GROW RATE 0.01
Info: PAIRLIST TRIGGER 0.3
Info: PAIRLISTS PER CYCLE 2
Info: PAIRLISTS ENABLED
Info: MARGIN 0
Info: HYDROGEN GROUP CUTOFF 2.5
Info: PATCH DIMENSION 16
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: TIMING OUTPUT STEPS 20
Info: PARTICLE MESH EWALD (PME) ACTIVE
Info: PME TOLERANCE 1e-06
Info: PME EWALD COEFFICIENT 0.257952
Info: PME INTERPOLATION ORDER 4
Info: PME GRID DIMENSIONS 108 108 80
Info: PME MAXIMUM GRID SPACING 1.5
Info: Attempting to read FFTW data from system
Info: Attempting to read FFTW data from FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: Optimizing 6 FFT steps. 1... 2... 3... 4... 5... 6... Done.
Info: Writing FFTW data to FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: FULL ELECTROSTATIC EVALUATION FREQUENCY 4
Info: USING VERLET I (r-RESPA) MTS SCHEME.
Info: C1 SPLITTING OF LONG RANGE ELECTROSTATICS
Info: PLACING ATOMS IN PATCHES BY HYDROGEN GROUPS
Info: RANDOM NUMBER SEED 74269
Info: USE HYDROGEN BONDS? NO
Info: COORDINATE PDB apoa1.pdb
Info: STRUCTURE FILE apoa1.psf
Info: PARAMETER file: XPLOR format! (default)
Info: PARAMETERS par_all22_prot_lipid.xplor
Info: PARAMETERS par_all22_popc.xplor
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.83476
Info: TIME FOR READING PDB FILE: 0.376739
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.32244 s, 3129.55 MB of memory in use
Info: Startup phase 0 took 0.000205254 s, 3129.55 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.20047 s, 3151.57 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101645 s, 3151.57 MB of memory in use
Info: Startup phase 3 took 0.000126315 s, 3151.57 MB of memory in use
Info: Startup phase 4 took 0.000400133 s, 3151.57 MB of memory in use
Info: Startup phase 5 took 0.000129317 s, 3151.57 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0450382 s, 3170.34 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.416249 s, 3170.34 MB of memory in use
Info: Startup phase 8 took 0.00772141 s, 3178.34 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000499824 s, 3178.34 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00571084 s, 3178.34 MB of memory in use
Info: Startup phase 11 took 0.000235354 s, 3178.34 MB of memory in use
Info: Startup phase 12 took 0.000194261 s, 3178.34 MB of memory in use
Info: Finished startup at 7.00043 s, 3178.34 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8938 24849.5776 0.0000 0.0000 58070.8721 -222575.0713 211.2459 -280645.9434 -223447.0520 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2976 25088.6262 0.0000 0.0000 59867.7845 -223079.1303 217.7825 -282946.9148 -223360.7366 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2218 25459.6294 0.0000 0.0000 52507.9934 -222544.6643 191.0096 -275052.6577 -223356.7147 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0125 25887.6534 0.0000 0.0000 42953.1287 -221679.2678 156.2517 -264632.3965 -223352.8549 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3013 26266.0174 0.0000 0.0000 42465.0707 -221790.4531 154.4763 -264255.5238 -223296.4333 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9405 26591.7245 0.0000 0.0000 50541.8171 -222627.2007 183.8572 -273169.0178 -223230.8088 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2674 26963.6414 0.0000 0.0000 55373.6415 -223162.5383 201.4341 -278536.1798 -223232.0106 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0268 27435.0793 0.0000 0.0000 49899.6949 -222651.4172 181.5214 -272551.1121 -223231.3831 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
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LDB: ============== END OF LOAD BALANCING =============== 16.5538
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LDB: =============== DONE WITH MIGRATION ================ 16.5543
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 54.5351
LDB: Largest compute 200 load 0.435512 is 1.2% of average load 36.818434
LDB: Average compute 0.051572 is 0.1% of average load 36.818434
LDB: Partitioning computes with target load 3.681843
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.056058
LDB: ============== END OF LOAD BALANCING =============== 54.5372
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.5381
Info: Initial time: 4 CPUs 0.474822 s/step 5.49562 days/ns 3221.52 MB memory
TIMING: 100 CPU: 48.4552, 0.473917/step Wall: 48.4552, 0.473917/step, 0.0526575 hours remaining, 3221.515625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 63.9943
LDB: ============== END OF LOAD BALANCING =============== 63.9944
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 63.9949
TIMING: 120 CPU: 57.9095, 0.472715/step Wall: 57.9095, 0.472715/step, 0.0498977 hours remaining, 3221.714844 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 138 21874.8524 19195.4802 5730.8549 192.8766 -333203.4341 21083.5324 0.0000 0.0000 42784.9640 -222340.8737 155.6399 -265125.8377 -222213.1813 155.6399 -2704.7054 -2927.3525 921491.4634 -2704.7054 -2927.3525
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TIMING: 140 CPU: 67.3624, 0.472644/step Wall: 67.3624, 0.472644/step, 0.0472644 hours remaining, 3221.929688 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 160 CPU: 76.8019, 0.471977/step Wall: 76.8019, 0.471977/step, 0.0445756 hours remaining, 3222.070312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 180 CPU: 86.2303, 0.471418/step Wall: 86.2303, 0.471418/step, 0.0419038 hours remaining, 3222.070312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 101.745
LDB: Largest compute 200 load 0.430668 is 1.2% of average load 36.641273
LDB: Average compute 0.051319 is 0.1% of average load 36.641273
LDB: TIME 101.747 LOAD: AVG 36.6413 MAX 37.7505 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.48 MB
LDB: TIME 101.749 LOAD: AVG 36.6413 MAX 37.5067 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.48 MB
LDB: ============== END OF LOAD BALANCING =============== 101.751
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.755
Info: Initial time: 4 CPUs 0.472016 s/step 5.46315 days/ns 3223.21 MB memory
TIMING: 200 CPU: 95.6668, 0.471825/step Wall: 95.6668, 0.471825/step, 0.0393187 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 220 CPU: 105.108, 0.472062/step Wall: 105.108, 0.472062/step, 0.0367159 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 240 CPU: 114.54, 0.471606/step Wall: 114.54, 0.471606/step, 0.0340604 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 243 19462.3621 19969.6445 5749.3614 168.8705 -335233.7066 21770.4747 0.0000 0.0000 45537.0690 -222575.9245 165.6513 -268112.9935 -222061.6674 165.6513 -3760.4507 -2614.6992 921491.4634 -3760.4507 -2614.6992
ENERGY: 244 18822.2465 19849.3934 5737.4544 169.6534 -334482.6006 21720.5675 0.0000 0.0000 45629.1662 -222554.1192 165.9864 -268183.2854 -222078.7768 165.9864 -2667.7299 -2573.2149 921491.4634 -2667.7299 -2573.2149
ENERGY: 245 20148.2369 19811.7599 5725.7785 171.4559 -334087.5942 21701.2469 0.0000 0.0000 44168.5247 -222360.5915 160.6730 -266529.1162 -222068.6363 160.6730 -1771.6901 -2533.5454 921491.4634 -1771.6901 -2533.5454
ENERGY: 246 20878.5481 19853.7025 5716.8932 174.1558 -334213.1202 21705.0849 0.0000 0.0000 43600.4181 -222284.3175 158.6063 -265884.7356 -222067.4293 158.6063 -1173.7929 -2523.3912 921491.4634 -1173.7929 -2523.3912
ENERGY: 247 19868.5286 19979.6441 5712.7400 177.5412 -334802.1838 21719.8453 0.0000 0.0000 44912.1911 -222431.6934 163.3782 -267343.8845 -222068.1391 163.3782 -982.9999 -2552.5930 921491.4634 -982.9999 -2552.5930
ENERGY: 248 19035.4924 20164.4298 5713.8450 181.3144 -335623.1350 21746.4310 0.0000 0.0000 46185.9362 -222595.6863 168.0117 -268781.6225 -222090.3125 168.0117 -1359.1246 -2608.3066 921491.4634 -1359.1246 -2608.3066
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 256 20899.4410 18950.9577 5693.4518 195.6570 -332975.5970 21757.6847 0.0000 0.0000 43181.1613 -222297.2436 157.0812 -265478.4049 -222071.2737 157.0812 -2042.2408 -2664.5199 921491.4634 -2042.2408 -2664.5199
ENERGY: 257 20029.5653 18878.1873 5681.1759 194.7976 -333481.0037 21780.2418 0.0000 0.0000 44488.5470 -222428.4888 161.8371 -266917.0358 -222060.1681 161.8371 -2035.5361 -2692.1442 921491.4634 -2035.5361 -2692.1442
ENERGY: 258 19453.5866 18882.0666 5673.2911 193.6684 -334373.1542 21817.5077 0.0000 0.0000 45796.2580 -222556.7760 166.5942 -268353.0339 -222062.0606 166.5942 -2331.2327 -2737.1919 921491.4634 -2331.2327 -2737.1919
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TIMING: 260 CPU: 123.96, 0.471009/step Wall: 123.96, 0.471009/step, 0.0314006 hours remaining, 3223.562500 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 264 19385.2261 20436.4306 5710.6950 187.5052 -334855.9511 21907.7771 0.0000 0.0000 44751.4784 -222476.8386 162.7936 -267228.3170 -222069.1981 162.7936 -2191.1927 -2723.5294 921491.4634 -2191.1927 -2723.5294
ENERGY: 265 19946.8416 20681.9926 5713.6241 187.4392 -334395.6631 21906.0162 0.0000 0.0000 43607.6374 -222352.1118 158.6326 -265959.7492 -222054.3369 158.6326 -2038.0573 -2683.6035 921491.4634 -2038.0573 -2683.6035
ENERGY: 266 20048.7899 20788.8701 5712.1327 187.6137 -334399.4575 21914.4804 0.0000 0.0000 43399.3797 -222348.1909 157.8750 -265747.5706 -222054.3632 157.8750 -2130.7240 -2664.5956 921491.4634 -2130.7240 -2664.5956
ENERGY: 267 19648.0905 20691.2679 5707.0583 187.8501 -334831.4853 21930.8373 0.0000 0.0000 44220.2169 -222446.1643 160.8610 -266666.3812 -222055.6582 160.8610 -2435.4234 -2662.6783 921491.4634 -2435.4234 -2662.6783
ENERGY: 268 19962.9160 20375.7516 5700.1930 187.9286 -335513.7448 21959.1256 0.0000 0.0000 44823.5378 -222504.2923 163.0557 -267327.8300 -222075.9873 163.0557 -2903.2124 -2658.6181 921491.4634 -2903.2124 -2658.6181
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 270 22620.1934 19450.9167 5690.3173 187.1618 -336650.6774 22028.8070 0.0000 0.0000 44308.0076 -222365.2736 161.1804 -266673.2812 -222067.0432 161.1804 -3583.3634 -2617.7583 921491.4634 -3583.3634 -2617.7583
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ENERGY: 272 21021.5585 18896.0661 5692.8269 184.9335 -335921.4613 22015.0579 0.0000 0.0000 45607.7077 -222503.3107 165.9083 -268111.0184 -222081.1568 165.9083 -2551.9685 -2501.8805 921491.4634 -2551.9685 -2501.8805
ENERGY: 273 20123.2137 18932.9080 5697.5118 183.8526 -334925.7011 21985.5295 0.0000 0.0000 45502.7162 -222499.9692 165.5264 -268002.6854 -222069.0455 165.5264 -1837.1977 -2434.6760 921491.4634 -1837.1977 -2434.6760
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ENERGY: 276 19401.8502 19594.7508 5701.2547 182.4904 -333292.1276 21971.0409 0.0000 0.0000 44028.5272 -222412.2135 160.1637 -266440.7407 -222072.9390 160.1637 -1580.1299 -2417.6040 921491.4634 -1580.1299 -2417.6040
ENERGY: 277 19149.2971 19724.7160 5695.5210 182.9396 -333864.3448 21997.2386 0.0000 0.0000 44632.8113 -222481.8213 162.3619 -267114.6325 -222061.0983 162.3619 -2311.7543 -2498.0545 921491.4634 -2311.7543 -2498.0545
ENERGY: 278 20199.4576 19713.7759 5686.9122 183.6585 -334821.0998 22041.3358 0.0000 0.0000 44532.2541 -222463.7056 161.9961 -266995.9597 -222063.4126 161.9961 -3254.8155 -2593.7696 921491.4634 -3254.8155 -2593.7696
ENERGY: 279 21984.3649 19593.9431 5677.5176 184.5187 -335888.5795 22096.4198 0.0000 0.0000 43975.0880 -222376.7274 159.9693 -266351.8154 -222065.2018 159.9693 -4044.3212 -2682.8389 921491.4634 -4044.3212 -2682.8389
TIMING: 280 CPU: 133.374, 0.470671/step Wall: 133.374, 0.470671/step, 0.0287633 hours remaining, 3223.562500 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 280 22859.3231 19458.4367 5670.0026 185.3899 -336752.6629 22145.1353 0.0000 0.0000 44066.7338 -222367.6415 160.3027 -266434.3753 -222073.4243 160.3027 -4286.3893 -2748.0546 921491.4634 -4286.3893 -2748.0546
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ENERGY: 282 20943.7900 19615.5380 5669.9796 186.8360 -336942.5033 22176.7654 0.0000 0.0000 45823.3370 -222526.2574 166.6927 -268349.5944 -222063.3312 166.6927 -2992.3273 -2779.3668 921491.4634 -2992.3273 -2779.3668
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ENERGY: 285 20203.3288 20789.9630 5707.3565 186.7145 -334827.1964 22167.0164 0.0000 0.0000 43418.2631 -222354.5542 157.9437 -265772.8173 -222053.5963 157.9437 -1010.8438 -2700.0820 921491.4634 -1010.8438 -2700.0820
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 148.893
LDB: Largest compute 200 load 0.523796 is 1.1% of average load 45.694086
LDB: Average compute 0.064004 is 0.1% of average load 45.694086
LDB: TIME 148.895 LOAD: AVG 45.6941 MAX 47.1382 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3223.95 MB
LDB: TIME 148.895 LOAD: AVG 45.6941 MAX 47.1382 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: TIME 148.912 LOAD: AVG 45.6941 MAX 46.2057 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: ============== END OF LOAD BALANCING =============== 148.913
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 148.915
Info: Initial time: 4 CPUs 0.471104 s/step 5.45259 days/ns 3223.95 MB memory
TIMING: 300 CPU: 142.799, 0.471284/step Wall: 142.799, 0.471284/step, 0.0261824 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 320 CPU: 152.014, 0.460743/step Wall: 152.014, 0.460743/step, 0.0230371 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 340 CPU: 161.233, 0.460913/step Wall: 161.233, 0.460913/step, 0.020485 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 360 CPU: 170.443, 0.460509/step Wall: 170.443, 0.460509/step, 0.0179087 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 377 20646.4608 20251.1594 5706.5522 182.3248 -335763.5799 22794.3773 0.0000 0.0000 43848.2754 -222334.4301 159.5080 -266182.7055 -222041.4011 159.5080 -1819.5856 -2472.4986 921491.4634 -1819.5856 -2472.4986
ENERGY: 378 20473.8098 20495.6595 5711.4639 183.2952 -336584.2276 22821.5836 0.0000 0.0000 44474.7537 -222423.6619 161.7869 -266898.4156 -222044.3965 161.7869 -2972.9871 -2523.3498 921491.4634 -2972.9871 -2523.3498
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TIMING: 380 CPU: 179.648, 0.460251/step Wall: 179.648, 0.460251/step, 0.0153417 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 386 19981.2275 19220.9466 5707.6638 175.9384 -334865.1821 22880.7958 0.0000 0.0000 44519.8585 -222378.7515 161.9510 -266898.6101 -222051.0437 161.9510 122.6669 -2011.2429 921491.4634 122.6669 -2011.2429
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 194.977
LDB: Largest compute 230 load 0.530871 is 1.2% of average load 45.663288
LDB: Average compute 0.063945 is 0.1% of average load 45.663288
LDB: TIME 194.979 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3223.95 MB
LDB: TIME 194.98 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: TIME 194.98 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: ============== END OF LOAD BALANCING =============== 194.98
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.981
Info: Benchmark time: 4 CPUs 0.460562 s/step 5.33058 days/ns 3223.95 MB memory
TIMING: 400 CPU: 188.86, 0.460597/step Wall: 188.86, 0.460597/step, 0.0127944 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 402 22444.0480 19835.9109 5715.8942 173.8391 -338107.6287 23109.6378 0.0000 0.0000 44436.8098 -222391.4889 161.6489 -266828.2987 -222049.2225 161.6489 -4939.3797 -2681.7025 921491.4634 -4939.3797 -2681.7025
ENERGY: 403 20784.9696 19778.4828 5715.7218 174.2695 -337239.9784 23077.8402 0.0000 0.0000 45225.5962 -222483.0983 164.5183 -267708.6945 -222046.6853 164.5183 -3613.5981 -2605.7428 921491.4634 -3613.5981 -2605.7428
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ENERGY: 408 19735.8468 19387.6642 5692.2152 187.5226 -335902.8213 23017.8174 0.0000 0.0000 45394.4120 -222487.3431 165.1324 -267881.7551 -222063.5311 165.1324 -920.8278 -2294.1555 921491.4634 -920.8278 -2294.1555
ENERGY: 409 20350.1186 19376.4605 5688.4775 191.1592 -336896.6841 23057.9923 0.0000 0.0000 45733.6056 -222498.8703 166.3663 -268232.4759 -222051.6704 166.3663 -2367.4917 -2346.9324 921491.4634 -2367.4917 -2346.9324
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 413 21130.1418 20138.5249 5699.9334 199.7191 -337872.5317 23125.1117 0.0000 0.0000 45113.2139 -222465.8869 164.1095 -267579.1008 -222055.3452 164.1095 -3850.6271 -2398.9548 921491.4634 -3850.6271 -2398.9548
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ENERGY: 415 19745.2667 20572.1260 5708.7452 198.1487 -336456.1971 23071.1992 0.0000 0.0000 44733.2270 -222427.4844 162.7272 -267160.7114 -222049.0345 162.7272 -1174.6452 -2266.5614 921491.4634 -1174.6452 -2266.5614
ENERGY: 416 19942.3169 20661.9897 5710.0857 195.6953 -336157.5860 23063.1716 0.0000 0.0000 44200.2848 -222384.0420 160.7885 -266584.3269 -222052.9643 160.7885 -282.7612 -2224.6896 921491.4634 -282.7612 -2224.6896
ENERGY: 417 20031.3748 20631.3210 5709.0494 192.4696 -336373.1074 23072.1099 0.0000 0.0000 44338.4619 -222398.3209 161.2911 -266736.7827 -222044.6992 161.2911 -112.4550 -2227.1699 921491.4634 -112.4550 -2227.1699
ENERGY: 418 20154.6647 20457.0910 5705.5847 188.6536 -336970.7867 23098.6727 0.0000 0.0000 44915.1422 -222450.9778 163.3889 -267366.1200 -222046.7092 163.3889 -671.8542 -2269.9921 921491.4634 -671.8542 -2269.9921
ENERGY: 419 20790.7630 20185.5525 5700.4810 184.6054 -337717.8756 23139.8024 0.0000 0.0000 45250.3100 -222466.3612 164.6082 -267716.6713 -222049.5949 164.6082 -1783.9419 -2336.6464 921491.4634 -1783.9419 -2336.6464
TIMING: 420 CPU: 198.038, 0.45892/step Wall: 198.038, 0.45892/step, 0.0101982 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 422 22275.7614 19449.5351 5688.9976 174.4058 -338225.0319 23208.5476 0.0000 0.0000 45004.7086 -222423.0758 163.7148 -267427.7843 -222052.8450 163.7148 -4363.1155 -2465.6374 921491.4634 -4363.1155 -2465.6374
ENERGY: 423 21418.8987 19324.4274 5689.6736 172.2145 -337416.8962 23180.6041 0.0000 0.0000 45183.9716 -222447.1064 164.3669 -267631.0779 -222051.5233 164.3669 -3955.8311 -2434.9307 921491.4634 -3955.8311 -2434.9307
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ENERGY: 426 19603.3347 19432.3067 5702.4947 169.0990 -335270.6884 23080.2893 0.0000 0.0000 44862.7392 -222420.4248 163.1983 -267283.1640 -222049.1091 163.1983 -1125.8050 -2237.7215 921491.4634 -1125.8050 -2237.7215
ENERGY: 427 19598.5315 19595.2896 5707.1504 168.7509 -335498.4327 23074.5008 0.0000 0.0000 44915.2783 -222438.9312 163.3894 -267354.2095 -222048.7339 163.3894 -741.9008 -2207.6355 921491.4634 -741.9008 -2207.6355
ENERGY: 428 20140.4227 19760.4168 5710.4628 168.5259 -336199.9858 23087.7678 0.0000 0.0000 44884.2602 -222448.1295 163.2766 -267332.3898 -222058.0548 163.2766 -935.5730 -2206.9584 921491.4634 -935.5730 -2206.9584
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 430 22013.9871 20024.3737 5712.1700 168.1897 -338096.9210 23149.4494 0.0000 0.0000 44626.3106 -222402.4405 162.3383 -267028.7511 -222047.3913 162.3383 -2472.2456 -2268.0465 921491.4634 -2472.2456 -2268.0465
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ENERGY: 432 21768.3704 20188.6725 5710.3547 168.1086 -338651.2111 23176.0847 0.0000 0.0000 45177.9915 -222461.6286 164.3451 -267639.6201 -222065.9059 164.3451 -3350.2744 -2296.1498 921491.4634 -3350.2744 -2296.1498
ENERGY: 433 21200.9074 20275.9665 5710.3763 168.4633 -338164.0648 23162.2912 0.0000 0.0000 45192.9288 -222453.1312 164.3995 -267646.0600 -222052.5983 164.3995 -3187.3736 -2272.1277 921491.4634 -3187.3736 -2272.1277
ENERGY: 434 20730.3415 20338.1501 5711.6061 169.3247 -337394.2715 23140.7737 0.0000 0.0000 44883.1002 -222420.9752 163.2724 -267304.0754 -222051.1463 163.2724 -2694.3111 -2227.7885 921491.4634 -2694.3111 -2227.7885
ENERGY: 435 20235.2202 20362.4016 5714.0003 170.8455 -336680.6565 23123.4100 0.0000 0.0000 44675.9844 -222398.7945 162.5190 -267074.7789 -222049.5889 162.5190 -2061.3584 -2179.8951 921491.4634 -2061.3584 -2179.8951
ENERGY: 436 19670.9243 20349.9982 5717.2345 173.0864 -336303.8819 23119.9080 0.0000 0.0000 44847.0988 -222425.6317 163.1414 -267272.7304 -222059.6959 163.1414 -1520.6597 -2145.1616 921491.4634 -1520.6597 -2145.1616
ENERGY: 437 19434.5516 20329.5093 5720.9894 175.9827 -336411.9790 23136.3871 0.0000 0.0000 45159.2690 -222455.2900 164.2770 -267614.5590 -222050.7502 164.2770 -1319.1166 -2134.4848 921491.4634 -1319.1166 -2134.4848
ENERGY: 438 19935.1531 20278.6097 5724.6884 179.3848 -336899.4580 23173.5522 0.0000 0.0000 45148.1324 -222459.9373 164.2365 -267608.0697 -222051.5668 164.2365 -1493.0938 -2145.0880 921491.4634 -1493.0938 -2145.0880
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TIMING: 440 CPU: 207.209, 0.458551/step Wall: 207.209, 0.458551/step, 0.00764251 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 440 22071.5681 20036.2373 5729.7527 186.7201 -338123.1808 23276.2489 0.0000 0.0000 44417.5457 -222405.1080 161.5788 -266822.6536 -222059.4773 161.5788 -2408.4610 -2197.9670 921491.4634 -2408.4610 -2197.9670
ENERGY: 441 22355.5485 19860.0410 5730.3488 190.1145 -338361.1716 23313.2047 0.0000 0.0000 44502.6961 -222409.2180 161.8886 -266911.9140 -222050.0861 161.8886 -2716.1027 -2221.5313 921491.4634 -2716.1027 -2221.5313
ENERGY: 442 21853.6119 19664.5349 5729.4854 192.9411 -338090.1533 23327.1570 0.0000 0.0000 44880.6316 -222441.7914 163.2634 -267322.4230 -222049.7756 163.2634 -2710.5577 -2229.0695 921491.4634 -2710.5577 -2229.0695
ENERGY: 443 21064.3318 19487.0721 5727.6164 194.9329 -337369.3150 23320.0160 0.0000 0.0000 45118.1103 -222457.2355 164.1273 -267575.3457 -222048.5996 164.1273 -2448.1650 -2220.3530 921491.4634 -2448.1650 -2220.3530
ENERGY: 444 20449.3365 19357.2687 5725.4095 195.8734 -336464.1921 23301.5278 0.0000 0.0000 44987.7173 -222447.0588 163.6530 -267434.7761 -222057.9797 163.6530 -2090.2100 -2206.4398 921491.4634 -2090.2100 -2206.4398
ENERGY: 445 20125.5609 19307.2514 5723.6513 195.6942 -335759.3911 23283.8140 0.0000 0.0000 44708.7152 -222414.7041 162.6380 -267123.4194 -222046.5428 162.6380 -1846.9626 -2201.6924 921491.4634 -1846.9626 -2201.6924
ENERGY: 446 19947.6804 19324.9002 5722.5430 194.3235 -335494.5705 23276.0452 0.0000 0.0000 44620.2943 -222408.7839 162.3164 -267029.0782 -222046.1620 162.3164 -1800.7516 -2216.7292 921491.4634 -1800.7516 -2216.7292
ENERGY: 447 19914.2848 19416.0207 5722.2107 191.8641 -335769.4396 23282.7459 0.0000 0.0000 44816.5085 -222425.8050 163.0301 -267242.3134 -222046.8343 163.0301 -1993.3109 -2253.0601 921491.4634 -1993.3109 -2253.0601
ENERGY: 448 20187.5921 19583.6798 5722.5764 188.5554 -336503.1796 23303.8905 0.0000 0.0000 45065.6671 -222451.2184 163.9365 -267516.8854 -222059.3479 163.9365 -2372.1875 -2303.7898 921491.4634 -2372.1875 -2303.7898
ENERGY: 449 20877.4058 19832.6985 5723.5712 184.8596 -337500.9068 23334.5923 0.0000 0.0000 45101.1675 -222446.6117 164.0657 -267547.7793 -222047.7097 164.0657 -2827.1078 -2356.1406 921491.4634 -2827.1078 -2356.1406
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 450 21754.4852 20108.1300 5724.4776 181.0897 -338419.3248 23364.6243 0.0000 0.0000 44854.3095 -222432.2084 163.1677 -267286.5180 -222048.7859 163.1677 -3116.6755 -2394.3896 921491.4634 -3116.6755 -2394.3896
ENERGY: 451 22355.5902 20357.7256 5724.7144 177.6516 -338952.0910 23381.8007 0.0000 0.0000 44542.6987 -222411.9098 162.0341 -266954.6085 -222048.8244 162.0341 -3074.2533 -2405.7797 921491.4634 -3074.2533 -2405.7797
ENERGY: 452 22246.2017 20536.0135 5723.8953 174.8859 -338927.1542 23378.0944 0.0000 0.0000 44452.9197 -222415.1438 161.7075 -266868.0635 -222059.6368 161.7075 -2659.9607 -2384.7568 921491.4634 -2659.9607 -2384.7568
ENERGY: 453 21399.8729 20641.1313 5722.2878 173.1350 -338392.7942 23354.5908 0.0000 0.0000 44683.7035 -222418.0728 162.5470 -267101.7763 -222043.5370 162.5470 -2048.3341 -2342.4668 921491.4634 -2048.3341 -2342.4668
ENERGY: 454 20248.3384 20654.1376 5720.2217 172.3637 -337567.1425 23320.6902 0.0000 0.0000 45008.1469 -222443.2440 163.7273 -267451.3908 -222041.8389 163.7273 -1453.4581 -2293.1450 921491.4634 -1453.4581 -2293.1450
ENERGY: 455 19486.7909 20584.7123 5718.4844 172.5169 -336790.6463 23290.4024 0.0000 0.0000 45086.5793 -222451.1601 164.0126 -267537.7395 -222040.8568 164.0126 -1151.8825 -2255.8571 921491.4634 -1151.8825 -2255.8571
ENERGY: 456 19493.3723 20440.6803 5717.7556 173.4248 -336350.1084 23274.9632 0.0000 0.0000 44811.4730 -222438.4391 163.0118 -267249.9121 -222055.3482 163.0118 -1305.5003 -2245.5822 921491.4634 -1305.5003 -2245.5822
ENERGY: 457 20047.4930 20251.9438 5718.5580 174.9241 -336395.8172 23277.8276 0.0000 0.0000 44521.8709 -222403.1998 161.9583 -266925.0707 -222049.4128 161.9583 -1906.4162 -2263.5011 921491.4634 -1906.4162 -2263.5011
ENERGY: 458 20585.8435 20019.2726 5720.7061 176.6081 -336835.0965 23294.7174 0.0000 0.0000 44632.7893 -222405.1595 162.3618 -267037.9488 -222051.2818 162.3618 -2684.6984 -2301.0425 921491.4634 -2684.6984 -2301.0425
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TIMING: 460 CPU: 216.381, 0.458593/step Wall: 216.381, 0.458593/step, 0.00509548 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6138 19597.9066 5728.0971 179.4910 -338014.3777 23341.8004 0.0000 0.0000 45423.8571 -222480.6117 165.2395 -267904.4688 -222064.6836 165.2395 -3669.8202 -2365.2413 921491.4634 -3669.8202 -2365.2413
ENERGY: 461 21862.8764 19507.1076 5732.5753 180.4333 -338251.6226 23355.3938 0.0000 0.0000 45154.6142 -222458.6220 164.2601 -267613.2363 -222058.0508 164.2601 -3556.1667 -2361.1800 921491.4634 -3556.1667 -2361.1800
ENERGY: 462 22264.2259 19487.8108 5736.4822 180.9531 -337988.7180 23351.1089 0.0000 0.0000 44559.9295 -222408.2075 162.0968 -266968.1370 -222056.7215 162.0968 -2954.8202 -2323.4251 921491.4634 -2954.8202 -2323.4251
ENERGY: 463 21821.1795 19513.9014 5738.9361 181.1160 -337284.1038 23326.9481 0.0000 0.0000 44313.4574 -222388.5653 161.2002 -266702.0227 -222054.6243 161.2002 -2012.4426 -2264.0778 921491.4634 -2012.4426 -2264.0778
ENERGY: 464 20535.2463 19559.9270 5739.2518 181.0096 -336389.3846 23291.1945 0.0000 0.0000 44654.0271 -222428.7283 162.4391 -267082.7554 -222058.5728 162.4391 -1050.9227 -2205.5267 921491.4634 -1050.9227 -2205.5267
ENERGY: 465 19322.7828 19631.8851 5737.2899 180.7155 -335701.1538 23259.7395 0.0000 0.0000 45094.5691 -222474.1719 164.0416 -267568.7410 -222052.9387 164.0416 -512.3346 -2174.4007 921491.4634 -512.3346 -2174.4007
ENERGY: 466 19088.4511 19708.3579 5733.2107 180.2808 -335443.7727 23245.0608 0.0000 0.0000 45020.7909 -222467.6205 163.7733 -267488.4115 -222052.9784 163.7733 -630.3312 -2182.6709 921491.4634 -630.3312 -2182.6709
ENERGY: 467 19841.8070 19783.1741 5727.6704 179.7757 -335721.0951 23249.4534 0.0000 0.0000 44523.6664 -222415.5481 161.9649 -266939.2145 -222054.3494 161.9649 -1393.6027 -2232.5922 921491.4634 -1393.6027 -2232.5922
ENERGY: 468 20761.8481 19845.4942 5721.5089 179.2779 -336451.5665 23265.8130 0.0000 0.0000 44291.6584 -222385.9660 161.1209 -266677.6244 -222056.3588 161.1209 -2508.6710 -2314.1337 921491.4634 -2508.6710 -2314.1337
ENERGY: 469 21236.3013 19910.2022 5715.6824 178.8504 -337458.3202 23284.3967 0.0000 0.0000 44720.3203 -222412.5670 162.6802 -267132.8872 -222046.0747 162.6802 -3596.7402 -2405.7970 921491.4634 -3596.7402 -2405.7970
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1729 19972.8936 5710.9491 178.5947 -338383.2510 23297.0678 0.0000 0.0000 45346.4575 -222466.1154 164.9579 -267812.5729 -222047.6086 164.9579 -4259.6993 -2477.6829 921491.4634 -4259.6993 -2477.6829
ENERGY: 471 21732.8679 20054.6837 5707.9626 178.5890 -338913.2458 23297.5091 0.0000 0.0000 45471.3367 -222470.2968 165.4122 -267941.6335 -222047.5357 165.4122 -4290.5682 -2504.3173 921491.4634 -4290.5682 -2504.3173
ENERGY: 472 22081.2364 20161.5554 5707.0091 178.9047 -338870.6779 23279.4497 0.0000 0.0000 45028.5296 -222433.9929 163.8014 -267462.5225 -222059.5058 163.8014 -3659.7362 -2479.9184 921491.4634 -3659.7362 -2479.9184
ENERGY: 473 21866.1365 20289.3429 5707.9843 179.6165 -338307.7205 23240.7370 0.0000 0.0000 44634.5175 -222389.3859 162.3681 -267023.9033 -222043.8539 162.3681 -2556.3617 -2408.1657 921491.4634 -2556.3617 -2408.1657
ENERGY: 474 20842.9704 20372.0990 5710.2160 180.7466 -337438.4567 23189.2355 0.0000 0.0000 44733.2310 -222409.9582 162.7272 -267143.1891 -222041.2619 162.7272 -1295.5525 -2316.2728 921491.4634 -1295.5525 -2316.2728
ENERGY: 475 19674.2080 20371.7678 5712.9876 182.2512 -336604.2327 23142.3824 0.0000 0.0000 45070.2142 -222450.4216 163.9531 -267520.6358 -222039.4530 163.9531 -344.6449 -2232.2126 921491.4634 -344.6449 -2232.2126
ENERGY: 476 19235.7863 20282.0279 5715.7683 184.0125 -336100.0918 23115.8473 0.0000 0.0000 45106.0633 -222460.5863 164.0835 -267566.6496 -222053.6139 164.0835 -92.4049 -2183.0653 921491.4634 -92.4049 -2183.0653
ENERGY: 477 19704.7251 20145.9818 5718.4976 185.9230 -336101.8803 23114.2945 0.0000 0.0000 44812.3206 -222420.1376 163.0149 -267232.4582 -222044.8413 163.0149 -667.4946 -2171.8229 921491.4634 -667.4946 -2171.8229
ENERGY: 478 20493.4777 19974.7642 5721.0254 187.7262 -336537.4047 23131.2465 0.0000 0.0000 44627.0331 -222402.1316 162.3409 -267029.1647 -222047.4108 162.3409 -1807.1604 -2198.7957 921491.4634 -1807.1604 -2198.7957
ENERGY: 479 21125.3056 19793.3959 5723.3295 189.2099 -337215.5847 23156.6777 0.0000 0.0000 44802.1577 -222425.5084 162.9779 -267227.6661 -222050.5461 162.9779 -3089.8516 -2246.7918 921491.4634 -3089.8516 -2246.7918
TIMING: 480 CPU: 225.553, 0.458619/step Wall: 225.553, 0.458619/step, 0.00254788 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0326 19623.1966 5725.3111 190.1901 -337854.6786 23181.5122 0.0000 0.0000 45051.6814 -222458.7546 163.8856 -267510.4361 -222064.6206 163.8856 -4077.7325 -2291.4890 921491.4634 -4077.7325 -2291.4890
ENERGY: 481 22092.4855 19510.0433 5727.0953 190.6351 -338199.2480 23196.7963 0.0000 0.0000 45041.3367 -222440.8559 163.8480 -267482.1926 -222052.5261 163.8480 -4466.2393 -2305.6731 921491.4634 -4466.2393 -2305.6731
ENERGY: 482 22186.3470 19466.6792 5728.4964 190.3598 -338044.5416 23192.7477 0.0000 0.0000 44865.8518 -222414.0596 163.2096 -267279.9114 -222051.4108 163.2096 -4059.3097 -2278.0613 921491.4634 -4059.3097 -2278.0613
ENERGY: 483 21553.1415 19511.5742 5729.5660 189.3227 -337426.2182 23165.8743 0.0000 0.0000 44861.8969 -222414.8425 163.1953 -267276.7394 -222048.7668 163.1953 -2964.1721 -2216.4114 921491.4634 -2964.1721 -2216.4114
ENERGY: 484 20460.8925 19631.1936 5730.2465 187.5455 -336590.8880 23126.1354 0.0000 0.0000 45003.6033 -222451.2712 163.7107 -267454.8745 -222059.8737 163.7107 -1565.2423 -2143.1848 921491.4634 -1565.2423 -2143.1848
ENERGY: 485 19688.7719 19800.2989 5730.5256 185.2458 -335902.5861 23092.8472 0.0000 0.0000 44955.5727 -222449.3241 163.5360 -267404.8967 -222045.9601 163.5360 -422.1566 -2086.8733 921491.4634 -422.1566 -2086.8733
ENERGY: 486 19602.5426 19954.8174 5729.7198 182.4662 -335612.3563 23080.3809 0.0000 0.0000 44645.9117 -222416.5176 162.4096 -267062.4294 -222044.6755 162.4096 87.3184 -2070.0980 921491.4634 87.3184 -2070.0980
ENERGY: 487 19881.0926 20072.0212 5727.4348 179.4360 -335846.4478 23091.0546 0.0000 0.0000 44503.3494 -222392.0594 161.8910 -266895.4088 -222045.2402 161.8910 -192.2343 -2106.8838 921491.4634 -192.2343 -2106.8838
ENERGY: 488 20125.2098 20156.1361 5723.5441 176.4338 -336552.5454 23118.8618 0.0000 0.0000 44827.0559 -222425.3038 163.0685 -267252.3598 -222057.1936 163.0685 -1145.7533 -2194.6679 921491.4634 -1145.7533 -2194.6679
ENERGY: 489 20526.8870 20236.4610 5718.5749 173.8639 -337540.4659 23156.7312 0.0000 0.0000 45266.1010 -222461.8470 164.6656 -267727.9480 -222045.6082 164.6656 -2511.2403 -2316.7066 921491.4634 -2511.2403 -2316.7066
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7489 20292.9023 5712.8912 171.8438 -338458.1368 23196.4879 0.0000 0.0000 45213.5636 -222459.6990 164.4745 -267673.2626 -222048.2205 164.4745 -3823.4038 -2437.4154 921491.4634 -3823.4038 -2437.4154
ENERGY: 491 22430.4642 20312.1363 5707.3795 170.5404 -338984.5804 23226.0939 0.0000 0.0000 44733.0096 -222404.9565 162.7264 -267137.9661 -222049.4635 162.7264 -4629.6934 -2524.6214 921491.4634 -4629.6934 -2524.6214
ENERGY: 492 22612.9551 20289.6814 5702.9945 170.0207 -338937.5830 23232.7207 0.0000 0.0000 44542.1957 -222387.0149 162.0323 -266929.2105 -222060.3858 162.0323 -4606.8524 -2557.4729 921491.4634 -4606.8524 -2557.4729
ENERGY: 493 21558.2191 20260.7378 5700.7779 170.3200 -338358.0649 23214.0539 0.0000 0.0000 45033.8236 -222420.1324 163.8207 -267453.9560 -222046.5899 163.8207 -3796.3819 -2540.0995 921491.4634 -3796.3819 -2540.0995
ENERGY: 494 20068.3367 20225.0265 5700.9806 171.2193 -337454.3850 23183.0798 0.0000 0.0000 45622.2483 -222483.4937 165.9612 -268105.7421 -222044.0866 165.9612 -2500.8992 -2482.1067 921491.4634 -2500.8992 -2482.1067
ENERGY: 495 19383.2463 20186.8305 5703.5926 172.5416 -336566.9900 23159.4629 0.0000 0.0000 45484.1238 -222477.1923 165.4587 -267961.3162 -222041.5561 165.4587 -1249.6836 -2407.3055 921491.4634 -1249.6836 -2407.3055
ENERGY: 496 19722.4835 20130.6475 5708.0350 174.0933 -335998.7169 23154.2640 0.0000 0.0000 44699.5276 -222409.6659 162.6046 -267109.1935 -222049.0670 162.6046 -478.8996 -2343.4750 921491.4634 -478.8996 -2343.4750
ENERGY: 497 20212.6668 20059.9178 5713.4613 175.7242 -335952.5054 23166.3550 0.0000 0.0000 44261.0293 -222363.3510 161.0095 -266624.3803 -222042.7500 161.0095 -421.0231 -2316.7927 921491.4634 -421.0231 -2316.7927
ENERGY: 498 20182.0163 19957.1216 5718.5597 177.2604 -336366.4943 23189.3590 0.0000 0.0000 44728.2541 -222413.9233 162.7091 -267142.1773 -222044.5219 162.7091 -993.4677 -2331.6472 921491.4634 -993.4677 -2331.6472
ENERGY: 499 20158.0676 19847.7308 5722.4090 178.6361 -337058.4834 23219.2410 0.0000 0.0000 45439.2651 -222493.1339 165.2956 -267932.3990 -222047.2062 165.2956 -2020.8685 -2376.3389 921491.4634 -2020.8685 -2376.3389
Info: Benchmark time: 4 CPUs 0.457827 s/step 5.29893 days/ns 3223.95 MB memory
TIMING: 500 CPU: 234.643, 0.454461/step Wall: 234.643, 0.454461/step, 0 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8937 19756.6582 5724.4523 179.8271 -337741.4202 23251.1015 0.0000 0.0000 45359.0784 -222495.4090 165.0039 -267854.4873 -222061.0908 165.0039 -3197.5165 -2425.4139 921491.4634 -3197.5165 -2425.4139
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.566 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.566 MB of memory in use
====================================================
WallClock: 241.652878 CPUTime: 241.652878 Memory: 3229.566406 MB
[Partition 0][Node 0] End of program
Application 1109749 resources: utime ~949s, stime ~19s, Rss ~126688, inblocks ~66551, outblocks ~71876
Displaying test.log:
['/scratch/system/bwjenkins/tests/namd/2.10']
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/retest : batch submitted (2)
Charm++> Running on Gemini (GNI) with 4 processes
Charm++> static SMSG
Charm++> SMSG memory: 19.8KB
Charm++> memory pool init block size: 8MB, total memory pool limit 0MB (0 means no limit)
Charm++> memory pool registered memory limit: 200000MB, send limit: 100000MB
Charm++> Cray TLB page size: 2048K
Charm++> Running in non-SMP mode: numPes 4
Charm++> Using recursive bisection (scheme 3) for topology aware partitions
Converse/Charm++ Commit ID: v6.6.1-rc1-1-gba7c3c3-namd-charm-6.6.1-build-2014-Dec-08-28969
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (32-way SMP).
Info: NAMD 2.10 for CRAY-XT-ugni
Info:
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info:
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info:
Info: Based on Charm++/Converse 60601 for gni-crayxc
Info: Built Mon Dec 13 22:44:42 CST 2021 by bwjenkins on jyc1
Info: Running on 4 processors, 4 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.00586599 s
Info: 3103.79 MB of memory in use based on /proc/self/stat
Info: Configuration file is apoa1.namd
Info: Working in the current directory /mnt/abc/scratch/system/bwjenkins/sw_workdir/retest/2021-12-13T22:45:22.243879/namd_2.10_cle5.2_gnu5.1.0
TCL: Suspending until startup complete.
Info: SIMULATION PARAMETERS:
Info: TIMESTEP 1
Info: NUMBER OF STEPS 500
Info: STEPS PER CYCLE 20
Info: PERIODIC CELL BASIS 1 108.861 0 0
Info: PERIODIC CELL BASIS 2 0 108.861 0
Info: PERIODIC CELL BASIS 3 0 0 77.758
Info: PERIODIC CELL CENTER 0 0 0
Info: LOAD BALANCER Centralized
Info: LOAD BALANCING STRATEGY New Load Balancers -- DEFAULT
Info: LDB PERIOD 4000 steps
Info: FIRST LDB TIMESTEP 100
Info: LAST LDB TIMESTEP -1
Info: LDB BACKGROUND SCALING 1
Info: HOM BACKGROUND SCALING 1
Info: PME BACKGROUND SCALING 1
Info: MIN ATOMS PER PATCH 40
Info: INITIAL TEMPERATURE 300
Info: CENTER OF MASS MOVING INITIALLY? NO
Info: DIELECTRIC 1
Info: EXCLUDE SCALED ONE-FOUR
Info: 1-4 ELECTROSTATICS SCALED BY 1
Info: MODIFIED 1-4 VDW PARAMETERS WILL BE USED
Info: NO DCD TRAJECTORY OUTPUT
Info: NO EXTENDED SYSTEM TRAJECTORY OUTPUT
Info: NO VELOCITY DCD OUTPUT
Info: NO FORCE DCD OUTPUT
Info: OUTPUT FILENAME /usr/tmp/apoa1-out
Info: BINARY OUTPUT FILES WILL BE USED
Info: NO RESTART FILE
Info: SWITCHING ACTIVE
Info: SWITCHING ON 10
Info: SWITCHING OFF 12
Info: PAIRLIST DISTANCE 13.5
Info: PAIRLIST SHRINK RATE 0.01
Info: PAIRLIST GROW RATE 0.01
Info: PAIRLIST TRIGGER 0.3
Info: PAIRLISTS PER CYCLE 2
Info: PAIRLISTS ENABLED
Info: MARGIN 0
Info: HYDROGEN GROUP CUTOFF 2.5
Info: PATCH DIMENSION 16
Info: CROSSTERM ENERGY INCLUDED IN DIHEDRAL
Info: TIMING OUTPUT STEPS 20
Info: PARTICLE MESH EWALD (PME) ACTIVE
Info: PME TOLERANCE 1e-06
Info: PME EWALD COEFFICIENT 0.257952
Info: PME INTERPOLATION ORDER 4
Info: PME GRID DIMENSIONS 108 108 80
Info: PME MAXIMUM GRID SPACING 1.5
Info: Attempting to read FFTW data from system
Info: Attempting to read FFTW data from FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: Optimizing 6 FFT steps. 1... 2... 3... 4... 5... 6... Done.
Info: Writing FFTW data to FFTW_NAMD_2.10_CRAY-XT-ugni_FFTW3.txt
Info: FULL ELECTROSTATIC EVALUATION FREQUENCY 4
Info: USING VERLET I (r-RESPA) MTS SCHEME.
Info: C1 SPLITTING OF LONG RANGE ELECTROSTATICS
Info: PLACING ATOMS IN PATCHES BY HYDROGEN GROUPS
Info: RANDOM NUMBER SEED 74269
Info: USE HYDROGEN BONDS? NO
Info: COORDINATE PDB apoa1.pdb
Info: STRUCTURE FILE apoa1.psf
Info: PARAMETER file: XPLOR format! (default)
Info: PARAMETERS par_all22_prot_lipid.xplor
Info: PARAMETERS par_all22_popc.xplor
Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS
Info: SUMMARY OF PARAMETERS:
Info: 177 BONDS
Info: 435 ANGLES
Info: 446 DIHEDRAL
Info: 45 IMPROPER
Info: 0 CROSSTERM
Info: 83 VDW
Info: 6 VDW_PAIRS
Info: 0 NBTHOLE_PAIRS
Info: TIME FOR READING PSF FILE: 4.83476
Info: TIME FOR READING PDB FILE: 0.376739
Info:
Info: ****************************
Info: STRUCTURE SUMMARY:
Info: 92224 ATOMS
Info: 70660 BONDS
Info: 74136 ANGLES
Info: 74130 DIHEDRALS
Info: 1402 IMPROPERS
Info: 0 CROSSTERMS
Info: 0 EXCLUSIONS
Info: 1568 DIHEDRALS WITH MULTIPLE PERIODICITY (BASED ON PSF FILE)
Info: 276669 DEGREES OF FREEDOM
Info: 32992 HYDROGEN GROUPS
Info: 4 ATOMS IN LARGEST HYDROGEN GROUP
Info: 32992 MIGRATION GROUPS
Info: 4 ATOMS IN LARGEST MIGRATION GROUP
Info: TOTAL MASS = 553785 amu
Info: TOTAL CHARGE = -14 e
Info: MASS DENSITY = 0.997951 g/cm^3
Info: ATOM DENSITY = 0.100081 atoms/A^3
Info: *****************************
Info:
Info: Entering startup at 6.32244 s, 3129.55 MB of memory in use
Info: Startup phase 0 took 0.000205254 s, 3129.55 MB of memory in use
Info: ADDED 218698 IMPLICIT EXCLUSIONS
Info: Startup phase 1 took 0.20047 s, 3151.57 MB of memory in use
Info: NONBONDED TABLE R-SQUARED SPACING: 0.0625
Info: NONBONDED TABLE SIZE: 769 POINTS
Info: INCONSISTENCY IN FAST TABLE ENERGY VS FORCE: 0.000325096 AT 11.9556
Info: INCONSISTENCY IN SCOR TABLE ENERGY VS FORCE: 0.000324844 AT 11.9556
Info: INCONSISTENCY IN VDWA TABLE ENERGY VS FORCE: 0.0040507 AT 0.251946
Info: INCONSISTENCY IN VDWB TABLE ENERGY VS FORCE: 0.00150189 AT 0.251946
Info: Startup phase 2 took 0.00101645 s, 3151.57 MB of memory in use
Info: Startup phase 3 took 0.000126315 s, 3151.57 MB of memory in use
Info: Startup phase 4 took 0.000400133 s, 3151.57 MB of memory in use
Info: Startup phase 5 took 0.000129317 s, 3151.57 MB of memory in use
Info: PATCH GRID IS 6 (PERIODIC) BY 6 (PERIODIC) BY 4 (PERIODIC)
Info: PATCH GRID IS 1-AWAY BY 1-AWAY BY 1-AWAY
Info: REMOVING COM VELOCITY 0.00117959 0.0289175 0.0202933
Info: LARGEST PATCH (56) HAS 718 ATOMS
Info: TORUS A SIZE 4 USING 0
Info: TORUS B SIZE 1 USING 0
Info: TORUS C SIZE 1 USING 0
Info: TORUS MINIMAL MESH SIZE IS 1 BY 1 BY 1
Info: Placed 100% of base nodes on same physical node as patch
Info: Startup phase 6 took 0.0450382 s, 3170.34 MB of memory in use
Info: PME using 4 and 4 processors for FFT and reciprocal sum.
Info: PME GRID LOCATIONS: 0 1 2 3
Info: PME TRANS LOCATIONS: 0 1 2 3
Info: PME USING 4 GRID NODES AND 4 TRANS NODES
Info: Optimizing 4 FFT steps. 1... 2... 3... 4... Done.
Info: Startup phase 7 took 0.416249 s, 3170.34 MB of memory in use
Info: Startup phase 8 took 0.00772141 s, 3178.34 MB of memory in use
LDB: Central LB being created...
Info: Startup phase 9 took 0.000499824 s, 3178.34 MB of memory in use
Info: CREATING 2900 COMPUTE OBJECTS
Info: useSync: 1 useProxySync: 0
Info: Startup phase 10 took 0.00571084 s, 3178.34 MB of memory in use
Info: Startup phase 11 took 0.000235354 s, 3178.34 MB of memory in use
Info: Startup phase 12 took 0.000194261 s, 3178.34 MB of memory in use
Info: Finished startup at 7.00043 s, 3178.34 MB of memory in use
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 0 12352.4560 14603.1480 4549.0710 48.1064 -362073.7644 24229.5343 0.0000 0.0000 82752.2738 -223539.1750 301.0300 -306291.4487 -223524.8476 301.0300 -2568.6725 -3582.2555 921491.4634 -2568.6725 -3582.2555
ENERGY: 1 18844.4109 15785.9133 4571.2456 53.5350 -361670.8137 24319.4022 0.0000 0.0000 75223.8495 -222872.4573 273.6437 -298096.3067 -223478.1937 273.6437 -3192.4049 -3497.3102 921491.4634 -3192.4049 -3497.3102
ENERGY: 2 29488.6214 18758.6024 4637.0922 69.5538 -360338.7682 24512.0178 0.0000 0.0000 61082.0538 -221790.8268 222.1997 -282872.8806 -223476.2576 222.1997 -4269.6708 -3354.1998 921491.4634 -4269.6708 -3354.1998
ENERGY: 3 29918.6891 22271.8870 4734.9573 94.3383 -358090.2897 24689.8970 0.0000 0.0000 54714.9832 -221665.5378 199.0381 -276380.5211 -223477.2859 199.0381 -4381.8243 -3200.6937 921491.4634 -4381.8243 -3200.6937
ENERGY: 4 19827.4664 25006.8856 4848.8883 125.1325 -355303.8938 24849.5776 0.0000 0.0000 58070.8721 -222575.0713 211.2459 -280645.9434 -223447.0520 211.2459 -3364.1640 -3048.1295 921491.4634 -3364.1640 -3048.1295
ENERGY: 5 13036.3493 26178.7950 4962.9626 158.6498 -352372.2976 25088.6262 0.0000 0.0000 59867.7845 -223079.1303 217.7825 -282946.9148 -223360.7366 217.7825 -2383.2338 -2851.6449 921491.4634 -2383.2338 -2851.6449
ENERGY: 6 18385.4957 25630.3462 5063.5878 191.5051 -349783.2218 25459.6294 0.0000 0.0000 52507.9934 -222544.6643 191.0096 -275052.6577 -223356.7147 191.0096 -2314.8218 -2605.9946 921491.4634 -2314.8218 -2605.9946
ENERGY: 7 27980.6008 23734.7915 5141.9525 220.6179 -347598.0125 25887.6534 0.0000 0.0000 42953.1287 -221679.2678 156.2517 -264632.3965 -223352.8549 156.2517 -2593.7691 -2341.6010 921491.4634 -2593.7691 -2341.6010
ENERGY: 8 28660.4004 21173.3706 5194.4399 243.5492 -345793.3013 26266.0174 0.0000 0.0000 42465.0707 -221790.4531 154.4763 -264255.5238 -223296.4333 154.4763 -2188.9236 -2107.2011 921491.4634 -2188.9236 -2107.2011
ENERGY: 9 20060.8537 18806.4012 5223.1938 258.7496 -344109.9405 26591.7245 0.0000 0.0000 50541.8171 -222627.2007 183.8572 -273169.0178 -223230.8088 183.8572 -1151.0633 -1886.9948 921491.4634 -1151.0633 -1886.9948
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 10 14350.7486 17395.0176 5234.2194 265.4605 -342745.2674 26963.6414 0.0000 0.0000 55373.6415 -223162.5383 201.4341 -278536.1798 -223232.0106 201.4341 -586.8334 -1656.6309 921491.4634 -586.8334 -1656.6309
ENERGY: 11 18841.9142 17384.8949 5236.2376 263.7888 -341713.0268 27435.0793 0.0000 0.0000 49899.6949 -222651.4172 181.5214 -272551.1121 -223231.3831 181.5214 -1087.7151 -1401.1296 921491.4634 -1087.7151 -1401.1296
ENERGY: 12 26285.2529 18611.6925 5237.4073 254.5717 -340969.2134 27945.8074 0.0000 0.0000 40727.6954 -221906.7862 148.1562 -262634.4816 -223172.5614 148.1562 -1887.2027 -1155.3187 921491.4634 -1887.2027 -1155.3187
ENERGY: 13 25810.1550 20340.2227 5243.3633 239.3557 -340247.5483 28408.4744 0.0000 0.0000 38364.5171 -221841.4602 139.5596 -260205.9773 -223110.9488 139.5596 -1878.7366 -948.4511 921491.4634 -1878.7366 -948.4511
ENERGY: 14 18229.5293 21618.1813 5255.0116 219.9345 -339811.4722 28840.3575 0.0000 0.0000 43120.5707 -222527.8874 156.8608 -265648.4581 -223112.7585 156.8608 -1024.8387 -790.0064 921491.4634 -1024.8387 -790.0064
ENERGY: 15 14141.3260 21914.0174 5270.4562 198.4604 -339999.9011 29330.1986 0.0000 0.0000 46274.3874 -222871.0551 168.3335 -269145.4425 -223114.1848 168.3335 -276.1129 -654.0185 921491.4634 -276.1129 -654.0185
ENERGY: 16 18533.5985 21379.4766 5286.3853 177.1317 -341073.7437 29909.1296 0.0000 0.0000 43310.7888 -222477.2332 157.5527 -265788.0220 -223107.6652 157.5527 -215.9503 -534.2016 921491.4634 -215.9503 -534.2016
ENERGY: 17 24285.5816 20685.3759 5300.2791 158.0483 -342718.3075 30497.9364 0.0000 0.0000 39857.6662 -221933.4199 144.9912 -261791.0861 -223067.7881 144.9912 -418.5180 -445.9262 921491.4634 -418.5180 -445.9262
ENERGY: 18 23242.4117 20468.5288 5310.2672 142.6286 -344641.7089 31004.0211 0.0000 0.0000 42309.0086 -222164.8429 153.9085 -264473.8515 -223068.8514 153.9085 -264.8021 -408.6302 921491.4634 -264.8021 -408.6302
ENERGY: 19 18143.9401 20989.5295 5316.6991 131.8194 -346529.5495 31434.4322 0.0000 0.0000 47714.3022 -222798.8269 173.5715 -270513.1292 -223071.3655 173.5715 41.9014 -392.2664 921491.4634 41.9014 -392.2664
LDB: ============= START OF LOAD BALANCING ============== 16.5537
LDB: ============== END OF LOAD BALANCING =============== 16.5538
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 16.5543
TIMING: 20 CPU: 10.4827, 0.47568/step Wall: 10.4827, 0.47568/step, 0.063424 hours remaining, 3219.574219 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 20 17965.5060 22054.9968 5321.8173 125.9640 -348206.1514 31862.6111 0.0000 0.0000 47960.4282 -222914.8280 174.4669 -270875.2562 -223082.7605 174.4669 -133.8116 -346.5459 921491.4634 -133.8116 -346.5459
ENERGY: 21 24039.1424 23261.1505 5329.8150 124.9653 -349366.5696 32291.6370 0.0000 0.0000 42039.3837 -222280.4757 152.9277 -264319.8594 -223063.1335 152.9277 -740.3955 -247.6204 921491.4634 -740.3955 -247.6204
ENERGY: 22 27739.0451 24128.7772 5344.8281 128.0343 -349763.5535 32625.8383 0.0000 0.0000 37948.0935 -221848.9370 138.0447 -259797.0305 -223062.3006 138.0447 -901.2301 -130.9897 921491.4634 -901.2301 -130.9897
ENERGY: 23 23247.6166 24272.4991 5370.4269 134.1642 -349332.6445 32798.0362 0.0000 0.0000 41280.9383 -222228.9632 150.1687 -263509.9014 -223063.4051 150.1687 -121.6534 -27.8474 921491.4634 -121.6534 -27.8474
ENERGY: 24 16511.8017 23459.5973 5407.7262 142.1780 -348420.3087 32880.6042 0.0000 0.0000 47144.4571 -222873.9443 171.4986 -270018.4013 -223056.8662 171.4986 942.5310 70.4533 921491.4634 942.5310 70.4533
ENERGY: 25 16917.9802 21778.2434 5454.8988 151.0023 -347594.2602 32989.6205 0.0000 0.0000 47486.3028 -222816.2122 172.7421 -270302.5150 -223053.2178 172.7421 1272.0519 195.5279 921491.4634 1272.0519 195.5279
ENERGY: 26 23581.2555 19675.3688 5506.8492 159.5877 -347249.8435 33136.3761 0.0000 0.0000 43029.5317 -222160.8745 156.5296 -265190.4062 -223051.5348 156.5296 769.4264 319.1966 921491.4634 769.4264 319.1966
ENERGY: 27 26456.6583 17946.7066 5557.4986 167.2901 -347403.8184 33225.3823 0.0000 0.0000 42147.2259 -221903.0566 153.3200 -264050.2825 -223051.1655 153.3200 220.6605 393.1595 921491.4634 220.6605 393.1595
ENERGY: 28 21041.4521 17329.1340 5601.2360 173.7564 -347813.2806 33197.2135 0.0000 0.0000 47975.5933 -222494.8954 174.5220 -270470.4886 -223001.5673 174.5220 79.1066 399.7476 921491.4634 79.1066 399.7476
ENERGY: 29 15396.3270 18061.9472 5634.3634 178.8635 -348340.9353 33114.0513 0.0000 0.0000 52817.3032 -223138.0798 192.1348 -275955.3829 -223013.8479 192.1348 -116.7881 392.2540 921491.4634 -116.7881 392.2540
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 30 18751.3177 19659.9906 5655.0732 182.5488 -348790.2988 33060.9284 0.0000 0.0000 48617.0317 -222863.4083 176.8554 -271480.4400 -223014.4702 176.8554 -820.6934 415.3193 921491.4634 -820.6934 415.3193
ENERGY: 31 27694.5952 21259.1819 5664.2790 184.9293 -348929.5885 33008.3021 0.0000 0.0000 39136.7131 -221981.5878 142.3686 -261118.3009 -223012.7195 142.3686 -1451.9808 460.8912 921491.4634 -1451.9808 460.8912
ENERGY: 32 30068.2854 22087.7451 5665.1959 186.2529 -348469.1900 32843.5147 0.0000 0.0000 35956.7802 -221661.4158 130.8009 -257618.1960 -222879.6158 130.8009 -898.8256 477.0667 921491.4634 -898.8256 477.0667
ENERGY: 33 21814.4413 21866.1207 5662.7076 186.8472 -347503.8045 32533.7071 0.0000 0.0000 43073.5125 -222366.4681 156.6896 -265439.9806 -222875.1213 156.6896 944.3631 439.8050 921491.4634 944.3631 439.8050
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 60 CPU: 29.4917, 0.474881/step Wall: 29.4917, 0.474881/step, 0.058041 hours remaining, 3220.929688 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 76 24088.0852 20909.5964 5804.9697 189.4305 -335690.6753 23665.5789 0.0000 0.0000 39065.9954 -221967.0191 142.1114 -261033.0145 -222445.7222 142.1114 -89.2494 -2070.9252 921491.4634 -89.2494 -2070.9252
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ENERGY: 78 17886.0019 22851.3491 5805.4285 195.2662 -337741.3158 23553.3821 0.0000 0.0000 44753.0528 -222696.8352 162.7993 -267449.8880 -222421.1607 162.7993 -1412.5336 -2278.9367 921491.4634 -1412.5336 -2278.9367
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TIMING: 80 CPU: 38.9768, 0.474258/step Wall: 38.9768, 0.474258/step, 0.0553301 hours remaining, 3221.156250 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 98 19979.7556 22958.8353 5756.3117 214.8681 -335616.8430 22188.2114 0.0000 0.0000 41993.4227 -222525.4381 152.7605 -264518.8608 -222347.6397 152.7605 -3206.5490 -2272.3421 921491.4634 -3206.5490 -2272.3421
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LDB: ============= START OF LOAD BALANCING ============== 54.5351
LDB: Largest compute 200 load 0.435512 is 1.2% of average load 36.818434
LDB: Average compute 0.051572 is 0.1% of average load 36.818434
LDB: Partitioning computes with target load 3.681843
LDB: Increased migratable compute count from 2736 to 2736
LDB: Largest unpartitionable compute is 0.056058
LDB: ============== END OF LOAD BALANCING =============== 54.5372
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 54.5381
Info: Initial time: 4 CPUs 0.474822 s/step 5.49562 days/ns 3221.52 MB memory
TIMING: 100 CPU: 48.4552, 0.473917/step Wall: 48.4552, 0.473917/step, 0.0526575 hours remaining, 3221.515625 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============== END OF LOAD BALANCING =============== 63.9944
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 63.9949
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 160 CPU: 76.8019, 0.471977/step Wall: 76.8019, 0.471977/step, 0.0445756 hours remaining, 3222.070312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 180 CPU: 86.2303, 0.471418/step Wall: 86.2303, 0.471418/step, 0.0419038 hours remaining, 3222.070312 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 180 19770.2942 19384.7963 5738.8341 156.9935 -334084.3522 21065.2916 0.0000 0.0000 45324.2214 -222643.9211 164.8771 -267968.1425 -222142.6343 164.8771 -2684.8628 -2671.3561 921491.4634 -2684.8628 -2671.3561
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ENERGY: 187 22073.2966 19471.4304 5678.7398 184.6336 -333156.1127 21076.9264 0.0000 0.0000 42449.0057 -222222.0802 154.4178 -264671.0859 -222130.9080 154.4178 -3641.8535 -2802.0867 921491.4634 -3641.8535 -2802.0867
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 101.745
LDB: Largest compute 200 load 0.430668 is 1.2% of average load 36.641273
LDB: Average compute 0.051319 is 0.1% of average load 36.641273
LDB: TIME 101.747 LOAD: AVG 36.6413 MAX 37.7505 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3222.48 MB
LDB: TIME 101.749 LOAD: AVG 36.6413 MAX 37.5067 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 TorusLB MEM: 3222.48 MB
LDB: ============== END OF LOAD BALANCING =============== 101.751
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 101.755
Info: Initial time: 4 CPUs 0.472016 s/step 5.46315 days/ns 3223.21 MB memory
TIMING: 200 CPU: 95.6668, 0.471825/step Wall: 95.6668, 0.471825/step, 0.0393187 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 201 23380.1030 18674.3333 5716.2802 191.4188 -334751.7126 21239.1339 0.0000 0.0000 43222.4695 -222327.9738 157.2315 -265550.4432 -222100.1074 157.2315 -4546.2003 -2661.1899 921491.4634 -4546.2003 -2661.1899
ENERGY: 202 23622.8118 18850.8450 5722.5980 192.1474 -334305.3002 21243.2751 0.0000 0.0000 42432.5587 -222241.0643 154.3580 -264673.6230 -222096.8286 154.3580 -3005.0518 -2588.0012 921491.4634 -3005.0518 -2588.0012
ENERGY: 203 20743.8946 19130.0390 5729.2400 192.0764 -333501.9369 21215.8253 0.0000 0.0000 44059.6986 -222431.1630 160.2771 -266490.8616 -222093.6423 160.2771 -1046.8258 -2512.4434 921491.4634 -1046.8258 -2512.4434
ENERGY: 204 17862.6125 19486.9556 5734.1463 191.2124 -332722.2198 21188.8401 0.0000 0.0000 45629.4720 -222628.9809 165.9875 -268258.4529 -222116.7001 165.9875 452.9932 -2462.2929 921491.4634 452.9932 -2462.2929
ENERGY: 205 18189.0790 19868.9414 5735.7153 189.6741 -332398.2549 21197.9184 0.0000 0.0000 44690.7150 -222526.2116 162.5725 -267216.9266 -222099.8060 162.5725 731.8535 -2447.6353 921491.4634 731.8535 -2447.6353
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ENERGY: 208 20293.2702 20371.8904 5718.1572 182.8654 -334789.2375 21322.2409 0.0000 0.0000 44428.6271 -222472.1864 161.6191 -266900.8135 -222122.6313 161.6191 -3669.0642 -2719.7953 921491.4634 -3669.0642 -2719.7953
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 210 21385.1735 20194.2570 5705.3139 178.4614 -336615.7768 21385.1095 0.0000 0.0000 45251.4335 -222516.0280 164.6123 -267767.4615 -222108.2014 164.6123 -6091.3663 -2896.2628 921491.4634 -6091.3663 -2896.2628
ENERGY: 211 24099.1929 19985.8633 5704.9373 176.9105 -336667.8927 21415.1476 0.0000 0.0000 43031.7285 -222254.1126 156.5376 -265285.8412 -222106.8539 156.5376 -5900.2979 -2885.1011 921491.4634 -5900.2979 -2885.1011
ENERGY: 212 23739.2711 19730.8223 5710.0295 176.0352 -336013.6228 21412.5982 0.0000 0.0000 42995.1638 -222249.7026 156.4046 -265244.8664 -222104.2318 156.4046 -4424.1004 -2820.3211 921491.4634 -4424.1004 -2820.3211
ENERGY: 213 20150.2161 19524.5249 5720.1722 175.9508 -334874.6444 21380.5551 0.0000 0.0000 45418.7806 -222504.4447 165.2210 -267923.2253 -222097.3834 165.2210 -2174.3119 -2725.0841 921491.4634 -2174.3119 -2725.0841
ENERGY: 214 17315.5529 19421.7448 5733.3059 176.6827 -333645.3935 21358.4484 0.0000 0.0000 46958.4703 -222681.1885 170.8220 -269639.6588 -222093.7407 170.8220 -143.6686 -2626.0578 921491.4634 -143.6686 -2626.0578
ENERGY: 215 18210.5055 19441.9743 5746.5772 178.1492 -332787.3320 21379.5595 0.0000 0.0000 45302.6747 -222527.8916 164.7987 -267830.5663 -222091.0447 164.7987 784.0015 -2554.0368 921491.4634 784.0015 -2554.0368
ENERGY: 216 20973.4716 19522.5061 5756.9571 180.1770 -332560.1057 21436.4835 0.0000 0.0000 42442.1788 -222248.3316 154.3930 -264690.5104 -222073.6154 154.3930 420.9902 -2541.5428 921491.4634 420.9902 -2541.5428
ENERGY: 217 21778.3866 19581.4819 5762.2416 182.5517 -333010.6753 21497.2705 0.0000 0.0000 41983.6750 -222225.0680 152.7251 -264208.7430 -222064.4462 152.7251 -882.1698 -2598.7243 921491.4634 -882.1698 -2598.7243
ENERGY: 218 20165.9156 19540.0890 5761.2415 184.9927 -333856.1142 21546.6560 0.0000 0.0000 44178.6836 -222478.5358 160.7099 -266657.2194 -222068.8153 160.7099 -2628.0651 -2703.9746 921491.4634 -2628.0651 -2703.9746
ENERGY: 219 19429.8640 19413.3931 5754.3577 187.2447 -334778.0705 21596.8808 0.0000 0.0000 45751.9297 -222644.4005 166.4329 -268396.3302 -222073.1717 166.4329 -4457.7332 -2810.5237 921491.4634 -4457.7332 -2810.5237
TIMING: 220 CPU: 105.108, 0.472062/step Wall: 105.108, 0.472062/step, 0.0367159 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 220 21580.9145 19260.1136 5743.1672 189.1021 -335473.8429 21655.3184 0.0000 0.0000 44539.5738 -222505.6534 162.0227 -267045.2272 -222092.6288 162.0227 -5898.3511 -2876.6576 921491.4634 -5898.3511 -2876.6576
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ENERGY: 222 23735.1225 19085.7307 5717.7679 191.2893 -335388.9913 21700.3076 0.0000 0.0000 42702.0389 -222256.7342 155.3383 -264958.7731 -222075.6637 155.3383 -5368.7280 -2838.7016 921491.4634 -5368.7280 -2838.7016
ENERGY: 223 20286.4337 19110.8426 5708.3528 191.5579 -334633.3912 21665.5242 0.0000 0.0000 45168.7533 -222501.9269 164.3115 -267670.6801 -222072.2456 164.3115 -3322.8077 -2753.9474 921491.4634 -3322.8077 -2753.9474
ENERGY: 224 17721.9818 19276.3017 5703.4616 191.3517 -333831.1558 21637.4892 0.0000 0.0000 46650.8782 -222649.6916 169.7031 -269300.5698 -222098.2845 169.7031 -1151.0970 -2650.6854 921491.4634 -1151.0970 -2650.6854
ENERGY: 225 18451.5608 19639.7348 5703.5482 190.8347 -333424.4647 21647.4588 0.0000 0.0000 45301.5807 -222489.7467 164.7947 -267791.3274 -222079.9378 164.7947 226.2573 -2563.9720 921491.4634 226.2573 -2563.9720
ENERGY: 226 20569.7731 20147.6375 5707.2430 190.0457 -333606.5693 21686.9380 0.0000 0.0000 43034.1678 -222270.7642 156.5465 -265304.9320 -222078.6802 156.5465 530.9034 -2526.3323 921491.4634 530.9034 -2526.3323
ENERGY: 227 21011.1675 20670.4533 5712.3895 189.0770 -334317.7219 21728.2283 0.0000 0.0000 42721.7945 -222284.6118 155.4101 -265006.4063 -222080.2096 155.4101 -104.6488 -2553.6074 921491.4634 -104.6488 -2553.6074
ENERGY: 228 19866.2927 21035.8346 5716.6482 188.0081 -335312.4264 21761.2923 0.0000 0.0000 44242.5386 -222501.8120 160.9422 -266744.3506 -222102.7889 160.9422 -1440.0181 -2625.9673 921491.4634 -1440.0181 -2625.9673
ENERGY: 229 19874.0813 21137.5589 5718.5477 187.0043 -336264.4466 21796.8119 0.0000 0.0000 44976.5837 -222573.8587 163.6125 -267550.4424 -222086.0486 163.6125 -3234.4608 -2710.7215 921491.4634 -3234.4608 -2710.7215
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 230 21999.2457 20926.2539 5717.1889 185.9786 -336838.6563 21834.6450 0.0000 0.0000 43751.0553 -222424.2890 159.1543 -266175.3442 -222088.6905 159.1543 -4902.3781 -2766.0557 921491.4634 -4902.3781 -2766.0557
ENERGY: 231 23806.6620 20470.3274 5713.0793 184.9073 -336794.0751 21849.7233 0.0000 0.0000 42506.4015 -222262.9743 154.6266 -264769.3758 -222089.4818 154.6266 -5730.6843 -2773.7615 921491.4634 -5730.6843 -2773.7615
ENERGY: 232 22812.6532 19886.6602 5707.7133 183.7520 -336072.1015 21820.0135 0.0000 0.0000 43315.5695 -222345.7399 157.5701 -265661.3093 -222098.2752 157.5701 -5301.5938 -2731.4986 921491.4634 -5301.5938 -2731.4986
ENERGY: 233 20035.6405 19318.2043 5703.4910 182.6157 -334889.2830 21760.7375 0.0000 0.0000 45350.0990 -222538.4950 164.9712 -267888.5940 -222089.6819 164.9712 -3899.2118 -2646.7386 921491.4634 -3899.2118 -2646.7386
ENERGY: 234 18553.6066 18856.0075 5702.3325 181.3395 -333642.4871 21712.9298 0.0000 0.0000 46049.0875 -222587.1837 167.5139 -268636.2712 -222086.3327 167.5139 -2187.7193 -2534.9736 921491.4634 -2187.7193 -2534.9736
ENERGY: 235 19419.0965 18603.4160 5705.8180 179.9133 -332789.1747 21702.6095 0.0000 0.0000 44750.4959 -222427.8254 162.7900 -267178.3214 -222083.1201 162.7900 -820.1736 -2429.4348 921491.4634 -820.1736 -2429.4348
ENERGY: 236 20566.0777 18629.1000 5714.2865 178.3391 -332585.8844 21721.5011 0.0000 0.0000 43477.4014 -222299.1786 158.1588 -265776.5800 -222073.0117 158.1588 -108.6481 -2371.7044 921491.4634 -108.6481 -2371.7044
ENERGY: 237 20196.0057 18940.2030 5726.8243 176.7459 -333068.3182 21749.0155 0.0000 0.0000 43898.3780 -222381.1458 159.6902 -266279.5238 -222063.3603 159.6902 -172.1586 -2373.2012 921491.4634 -172.1586 -2373.2012
ENERGY: 238 19419.4412 19404.0884 5740.6977 175.0128 -333964.3147 21778.9042 0.0000 0.0000 44901.2437 -222544.9268 163.3384 -267446.1705 -222065.9776 163.3384 -987.6011 -2425.5310 921491.4634 -987.6011 -2425.5310
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TIMING: 240 CPU: 114.54, 0.471606/step Wall: 114.54, 0.471606/step, 0.0340604 hours remaining, 3223.210938 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 258 19453.5866 18882.0666 5673.2911 193.6684 -334373.1542 21817.5077 0.0000 0.0000 45796.2580 -222556.7760 166.5942 -268353.0339 -222062.0606 166.5942 -2331.2327 -2737.1919 921491.4634 -2331.2327 -2737.1919
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TIMING: 260 CPU: 123.96, 0.471009/step Wall: 123.96, 0.471009/step, 0.0314006 hours remaining, 3223.562500 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 260 22744.9543 19188.2462 5675.1875 191.0393 -336169.7728 21924.7892 0.0000 0.0000 44083.4307 -222362.1256 160.3634 -266445.5562 -222069.6812 160.3634 -3407.4793 -2810.9878 921491.4634 -3407.4793 -2810.9878
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ENERGY: 262 21606.2725 19814.6777 5694.0656 188.7122 -336291.7860 21947.6073 0.0000 0.0000 44601.6348 -222438.8160 162.2485 -267040.4508 -222052.4323 162.2485 -3214.7561 -2810.4637 921491.4634 -3214.7561 -2810.4637
ENERGY: 263 19781.1229 20140.5622 5703.8103 187.9445 -335614.9714 21924.4739 0.0000 0.0000 45349.7772 -222527.2804 164.9700 -267877.0576 -222051.1547 164.9700 -2647.8116 -2773.3903 921491.4634 -2647.8116 -2773.3903
ENERGY: 264 19385.2261 20436.4306 5710.6950 187.5052 -334855.9511 21907.7771 0.0000 0.0000 44751.4784 -222476.8386 162.7936 -267228.3170 -222069.1981 162.7936 -2191.1927 -2723.5294 921491.4634 -2191.1927 -2723.5294
ENERGY: 265 19946.8416 20681.9926 5713.6241 187.4392 -334395.6631 21906.0162 0.0000 0.0000 43607.6374 -222352.1118 158.6326 -265959.7492 -222054.3369 158.6326 -2038.0573 -2683.6035 921491.4634 -2038.0573 -2683.6035
ENERGY: 266 20048.7899 20788.8701 5712.1327 187.6137 -334399.4575 21914.4804 0.0000 0.0000 43399.3797 -222348.1909 157.8750 -265747.5706 -222054.3632 157.8750 -2130.7240 -2664.5956 921491.4634 -2130.7240 -2664.5956
ENERGY: 267 19648.0905 20691.2679 5707.0583 187.8501 -334831.4853 21930.8373 0.0000 0.0000 44220.2169 -222446.1643 160.8610 -266666.3812 -222055.6582 160.8610 -2435.4234 -2662.6783 921491.4634 -2435.4234 -2662.6783
ENERGY: 268 19962.9160 20375.7516 5700.1930 187.9286 -335513.7448 21959.1256 0.0000 0.0000 44823.5378 -222504.2923 163.0557 -267327.8300 -222075.9873 163.0557 -2903.2124 -2658.6181 921491.4634 -2903.2124 -2658.6181
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 273 20123.2137 18932.9080 5697.5118 183.8526 -334925.7011 21985.5295 0.0000 0.0000 45502.7162 -222499.9692 165.5264 -268002.6854 -222069.0455 165.5264 -1837.1977 -2434.6760 921491.4634 -1837.1977 -2434.6760
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ENERGY: 276 19401.8502 19594.7508 5701.2547 182.4904 -333292.1276 21971.0409 0.0000 0.0000 44028.5272 -222412.2135 160.1637 -266440.7407 -222072.9390 160.1637 -1580.1299 -2417.6040 921491.4634 -1580.1299 -2417.6040
ENERGY: 277 19149.2971 19724.7160 5695.5210 182.9396 -333864.3448 21997.2386 0.0000 0.0000 44632.8113 -222481.8213 162.3619 -267114.6325 -222061.0983 162.3619 -2311.7543 -2498.0545 921491.4634 -2311.7543 -2498.0545
ENERGY: 278 20199.4576 19713.7759 5686.9122 183.6585 -334821.0998 22041.3358 0.0000 0.0000 44532.2541 -222463.7056 161.9961 -266995.9597 -222063.4126 161.9961 -3254.8155 -2593.7696 921491.4634 -3254.8155 -2593.7696
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TIMING: 280 CPU: 133.374, 0.470671/step Wall: 133.374, 0.470671/step, 0.0287633 hours remaining, 3223.562500 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 148.893
LDB: Largest compute 200 load 0.523796 is 1.1% of average load 45.694086
LDB: Average compute 0.064004 is 0.1% of average load 45.694086
LDB: TIME 148.895 LOAD: AVG 45.6941 MAX 47.1382 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3223.95 MB
LDB: TIME 148.895 LOAD: AVG 45.6941 MAX 47.1382 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: TIME 148.912 LOAD: AVG 45.6941 MAX 46.2057 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: ============== END OF LOAD BALANCING =============== 148.913
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 148.915
Info: Initial time: 4 CPUs 0.471104 s/step 5.45259 days/ns 3223.95 MB memory
TIMING: 300 CPU: 142.799, 0.471284/step Wall: 142.799, 0.471284/step, 0.0261824 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 320 CPU: 152.014, 0.460743/step Wall: 152.014, 0.460743/step, 0.0230371 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 328 20934.1978 19092.0092 5666.7484 187.7399 -335303.4705 22549.7451 0.0000 0.0000 44493.2354 -222379.7947 161.8542 -266873.0301 -222061.7257 161.8542 -1393.2037 -2547.3518 921491.4634 -1393.2037 -2547.3518
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 340 CPU: 161.233, 0.460913/step Wall: 161.233, 0.460913/step, 0.020485 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 347 20669.8294 19583.9410 5696.3950 182.8447 -334881.4381 22581.1978 0.0000 0.0000 43831.1327 -222336.0975 159.4456 -266167.2302 -222056.9473 159.4456 -1358.8145 -2194.9213 921491.4634 -1358.8145 -2194.9213
ENERGY: 348 21062.2470 19315.9903 5689.3479 182.7918 -335425.6663 22604.2197 0.0000 0.0000 44195.9875 -222375.0820 160.7729 -266571.0696 -222064.0948 160.7729 -1766.2766 -2218.9159 921491.4634 -1766.2766 -2218.9159
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 356 19622.4371 20015.8108 5694.4280 181.9402 -334758.7685 22674.4075 0.0000 0.0000 44153.0885 -222416.6564 160.6168 -266569.7449 -222053.0961 160.6168 -1622.0263 -2446.8266 921491.4634 -1622.0263 -2446.8266
ENERGY: 357 20687.2711 20255.1054 5697.1708 182.0215 -335288.0640 22700.2945 0.0000 0.0000 43438.0178 -222328.1829 158.0156 -265766.2007 -222042.2329 158.0156 -2061.3606 -2486.6662 921491.4634 -2061.3606 -2486.6662
ENERGY: 358 20785.4065 20424.8429 5696.9833 182.1295 -336225.9473 22730.2415 0.0000 0.0000 44019.5823 -222386.7615 160.1311 -266406.3438 -222043.9944 160.1311 -2636.8580 -2541.3593 921491.4634 -2636.8580 -2541.3593
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TIMING: 360 CPU: 170.443, 0.460509/step Wall: 170.443, 0.460509/step, 0.0179087 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 367 20741.0596 19662.8834 5732.9484 180.1165 -335098.3154 22794.3493 0.0000 0.0000 43662.6183 -222324.3398 158.8326 -265986.9582 -222058.3711 158.8326 -2104.1273 -2437.9269 921491.4634 -2104.1273 -2437.9269
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 370 21302.3706 19815.7282 5738.6028 179.1429 -337296.0553 22846.3049 0.0000 0.0000 44920.4943 -222493.4115 163.4084 -267413.9058 -222062.2625 163.4084 -4081.4435 -2576.8189 921491.4634 -4081.4435 -2576.8189
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TIMING: 380 CPU: 179.648, 0.460251/step Wall: 179.648, 0.460251/step, 0.0153417 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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LDB: ============= START OF LOAD BALANCING ============== 194.977
LDB: Largest compute 230 load 0.530871 is 1.2% of average load 45.663288
LDB: Average compute 0.063945 is 0.1% of average load 45.663288
LDB: TIME 194.979 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 112 MAXPE 28 MAXPATCH 1 None MEM: 3223.95 MB
LDB: TIME 194.98 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: TIME 194.98 LOAD: AVG 45.6633 MAX 46.0624 PROXIES: TOTAL 113 MAXPE 29 MAXPATCH 1 RefineTorusLB MEM: 3223.95 MB
LDB: ============== END OF LOAD BALANCING =============== 194.98
Info: useSync: 1 useProxySync: 0
LDB: =============== DONE WITH MIGRATION ================ 194.981
Info: Benchmark time: 4 CPUs 0.460562 s/step 5.33058 days/ns 3223.95 MB memory
TIMING: 400 CPU: 188.86, 0.460597/step Wall: 188.86, 0.460597/step, 0.0127944 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 402 22444.0480 19835.9109 5715.8942 173.8391 -338107.6287 23109.6378 0.0000 0.0000 44436.8098 -222391.4889 161.6489 -266828.2987 -222049.2225 161.6489 -4939.3797 -2681.7025 921491.4634 -4939.3797 -2681.7025
ENERGY: 403 20784.9696 19778.4828 5715.7218 174.2695 -337239.9784 23077.8402 0.0000 0.0000 45225.5962 -222483.0983 164.5183 -267708.6945 -222046.6853 164.5183 -3613.5981 -2605.7428 921491.4634 -3613.5981 -2605.7428
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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TIMING: 420 CPU: 198.038, 0.45892/step Wall: 198.038, 0.45892/step, 0.0101982 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 438 19935.1531 20278.6097 5724.6884 179.3848 -336899.4580 23173.5522 0.0000 0.0000 45148.1324 -222459.9373 164.2365 -267608.0697 -222051.5668 164.2365 -1493.0938 -2145.0880 921491.4634 -1493.0938 -2145.0880
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TIMING: 440 CPU: 207.209, 0.458551/step Wall: 207.209, 0.458551/step, 0.00764251 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
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ENERGY: 442 21853.6119 19664.5349 5729.4854 192.9411 -338090.1533 23327.1570 0.0000 0.0000 44880.6316 -222441.7914 163.2634 -267322.4230 -222049.7756 163.2634 -2710.5577 -2229.0695 921491.4634 -2710.5577 -2229.0695
ENERGY: 443 21064.3318 19487.0721 5727.6164 194.9329 -337369.3150 23320.0160 0.0000 0.0000 45118.1103 -222457.2355 164.1273 -267575.3457 -222048.5996 164.1273 -2448.1650 -2220.3530 921491.4634 -2448.1650 -2220.3530
ENERGY: 444 20449.3365 19357.2687 5725.4095 195.8734 -336464.1921 23301.5278 0.0000 0.0000 44987.7173 -222447.0588 163.6530 -267434.7761 -222057.9797 163.6530 -2090.2100 -2206.4398 921491.4634 -2090.2100 -2206.4398
ENERGY: 445 20125.5609 19307.2514 5723.6513 195.6942 -335759.3911 23283.8140 0.0000 0.0000 44708.7152 -222414.7041 162.6380 -267123.4194 -222046.5428 162.6380 -1846.9626 -2201.6924 921491.4634 -1846.9626 -2201.6924
ENERGY: 446 19947.6804 19324.9002 5722.5430 194.3235 -335494.5705 23276.0452 0.0000 0.0000 44620.2943 -222408.7839 162.3164 -267029.0782 -222046.1620 162.3164 -1800.7516 -2216.7292 921491.4634 -1800.7516 -2216.7292
ENERGY: 447 19914.2848 19416.0207 5722.2107 191.8641 -335769.4396 23282.7459 0.0000 0.0000 44816.5085 -222425.8050 163.0301 -267242.3134 -222046.8343 163.0301 -1993.3109 -2253.0601 921491.4634 -1993.3109 -2253.0601
ENERGY: 448 20187.5921 19583.6798 5722.5764 188.5554 -336503.1796 23303.8905 0.0000 0.0000 45065.6671 -222451.2184 163.9365 -267516.8854 -222059.3479 163.9365 -2372.1875 -2303.7898 921491.4634 -2372.1875 -2303.7898
ENERGY: 449 20877.4058 19832.6985 5723.5712 184.8596 -337500.9068 23334.5923 0.0000 0.0000 45101.1675 -222446.6117 164.0657 -267547.7793 -222047.7097 164.0657 -2827.1078 -2356.1406 921491.4634 -2827.1078 -2356.1406
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 450 21754.4852 20108.1300 5724.4776 181.0897 -338419.3248 23364.6243 0.0000 0.0000 44854.3095 -222432.2084 163.1677 -267286.5180 -222048.7859 163.1677 -3116.6755 -2394.3896 921491.4634 -3116.6755 -2394.3896
ENERGY: 451 22355.5902 20357.7256 5724.7144 177.6516 -338952.0910 23381.8007 0.0000 0.0000 44542.6987 -222411.9098 162.0341 -266954.6085 -222048.8244 162.0341 -3074.2533 -2405.7797 921491.4634 -3074.2533 -2405.7797
ENERGY: 452 22246.2017 20536.0135 5723.8953 174.8859 -338927.1542 23378.0944 0.0000 0.0000 44452.9197 -222415.1438 161.7075 -266868.0635 -222059.6368 161.7075 -2659.9607 -2384.7568 921491.4634 -2659.9607 -2384.7568
ENERGY: 453 21399.8729 20641.1313 5722.2878 173.1350 -338392.7942 23354.5908 0.0000 0.0000 44683.7035 -222418.0728 162.5470 -267101.7763 -222043.5370 162.5470 -2048.3341 -2342.4668 921491.4634 -2048.3341 -2342.4668
ENERGY: 454 20248.3384 20654.1376 5720.2217 172.3637 -337567.1425 23320.6902 0.0000 0.0000 45008.1469 -222443.2440 163.7273 -267451.3908 -222041.8389 163.7273 -1453.4581 -2293.1450 921491.4634 -1453.4581 -2293.1450
ENERGY: 455 19486.7909 20584.7123 5718.4844 172.5169 -336790.6463 23290.4024 0.0000 0.0000 45086.5793 -222451.1601 164.0126 -267537.7395 -222040.8568 164.0126 -1151.8825 -2255.8571 921491.4634 -1151.8825 -2255.8571
ENERGY: 456 19493.3723 20440.6803 5717.7556 173.4248 -336350.1084 23274.9632 0.0000 0.0000 44811.4730 -222438.4391 163.0118 -267249.9121 -222055.3482 163.0118 -1305.5003 -2245.5822 921491.4634 -1305.5003 -2245.5822
ENERGY: 457 20047.4930 20251.9438 5718.5580 174.9241 -336395.8172 23277.8276 0.0000 0.0000 44521.8709 -222403.1998 161.9583 -266925.0707 -222049.4128 161.9583 -1906.4162 -2263.5011 921491.4634 -1906.4162 -2263.5011
ENERGY: 458 20585.8435 20019.2726 5720.7061 176.6081 -336835.0965 23294.7174 0.0000 0.0000 44632.7893 -222405.1595 162.3618 -267037.9488 -222051.2818 162.3618 -2684.6984 -2301.0425 921491.4634 -2684.6984 -2301.0425
ENERGY: 459 20903.4944 19784.9693 5724.0021 178.1984 -337468.1648 23318.6985 0.0000 0.0000 45113.9372 -222444.8648 164.1121 -267558.8021 -222053.1407 164.1121 -3350.5828 -2341.5794 921491.4634 -3350.5828 -2341.5794
TIMING: 460 CPU: 216.381, 0.458593/step Wall: 216.381, 0.458593/step, 0.00509548 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 460 21262.6138 19597.9066 5728.0971 179.4910 -338014.3777 23341.8004 0.0000 0.0000 45423.8571 -222480.6117 165.2395 -267904.4688 -222064.6836 165.2395 -3669.8202 -2365.2413 921491.4634 -3669.8202 -2365.2413
ENERGY: 461 21862.8764 19507.1076 5732.5753 180.4333 -338251.6226 23355.3938 0.0000 0.0000 45154.6142 -222458.6220 164.2601 -267613.2363 -222058.0508 164.2601 -3556.1667 -2361.1800 921491.4634 -3556.1667 -2361.1800
ENERGY: 462 22264.2259 19487.8108 5736.4822 180.9531 -337988.7180 23351.1089 0.0000 0.0000 44559.9295 -222408.2075 162.0968 -266968.1370 -222056.7215 162.0968 -2954.8202 -2323.4251 921491.4634 -2954.8202 -2323.4251
ENERGY: 463 21821.1795 19513.9014 5738.9361 181.1160 -337284.1038 23326.9481 0.0000 0.0000 44313.4574 -222388.5653 161.2002 -266702.0227 -222054.6243 161.2002 -2012.4426 -2264.0778 921491.4634 -2012.4426 -2264.0778
ENERGY: 464 20535.2463 19559.9270 5739.2518 181.0096 -336389.3846 23291.1945 0.0000 0.0000 44654.0271 -222428.7283 162.4391 -267082.7554 -222058.5728 162.4391 -1050.9227 -2205.5267 921491.4634 -1050.9227 -2205.5267
ENERGY: 465 19322.7828 19631.8851 5737.2899 180.7155 -335701.1538 23259.7395 0.0000 0.0000 45094.5691 -222474.1719 164.0416 -267568.7410 -222052.9387 164.0416 -512.3346 -2174.4007 921491.4634 -512.3346 -2174.4007
ENERGY: 466 19088.4511 19708.3579 5733.2107 180.2808 -335443.7727 23245.0608 0.0000 0.0000 45020.7909 -222467.6205 163.7733 -267488.4115 -222052.9784 163.7733 -630.3312 -2182.6709 921491.4634 -630.3312 -2182.6709
ENERGY: 467 19841.8070 19783.1741 5727.6704 179.7757 -335721.0951 23249.4534 0.0000 0.0000 44523.6664 -222415.5481 161.9649 -266939.2145 -222054.3494 161.9649 -1393.6027 -2232.5922 921491.4634 -1393.6027 -2232.5922
ENERGY: 468 20761.8481 19845.4942 5721.5089 179.2779 -336451.5665 23265.8130 0.0000 0.0000 44291.6584 -222385.9660 161.1209 -266677.6244 -222056.3588 161.1209 -2508.6710 -2314.1337 921491.4634 -2508.6710 -2314.1337
ENERGY: 469 21236.3013 19910.2022 5715.6824 178.8504 -337458.3202 23284.3967 0.0000 0.0000 44720.3203 -222412.5670 162.6802 -267132.8872 -222046.0747 162.6802 -3596.7402 -2405.7970 921491.4634 -3596.7402 -2405.7970
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 470 21411.1729 19972.8936 5710.9491 178.5947 -338383.2510 23297.0678 0.0000 0.0000 45346.4575 -222466.1154 164.9579 -267812.5729 -222047.6086 164.9579 -4259.6993 -2477.6829 921491.4634 -4259.6993 -2477.6829
ENERGY: 471 21732.8679 20054.6837 5707.9626 178.5890 -338913.2458 23297.5091 0.0000 0.0000 45471.3367 -222470.2968 165.4122 -267941.6335 -222047.5357 165.4122 -4290.5682 -2504.3173 921491.4634 -4290.5682 -2504.3173
ENERGY: 472 22081.2364 20161.5554 5707.0091 178.9047 -338870.6779 23279.4497 0.0000 0.0000 45028.5296 -222433.9929 163.8014 -267462.5225 -222059.5058 163.8014 -3659.7362 -2479.9184 921491.4634 -3659.7362 -2479.9184
ENERGY: 473 21866.1365 20289.3429 5707.9843 179.6165 -338307.7205 23240.7370 0.0000 0.0000 44634.5175 -222389.3859 162.3681 -267023.9033 -222043.8539 162.3681 -2556.3617 -2408.1657 921491.4634 -2556.3617 -2408.1657
ENERGY: 474 20842.9704 20372.0990 5710.2160 180.7466 -337438.4567 23189.2355 0.0000 0.0000 44733.2310 -222409.9582 162.7272 -267143.1891 -222041.2619 162.7272 -1295.5525 -2316.2728 921491.4634 -1295.5525 -2316.2728
ENERGY: 475 19674.2080 20371.7678 5712.9876 182.2512 -336604.2327 23142.3824 0.0000 0.0000 45070.2142 -222450.4216 163.9531 -267520.6358 -222039.4530 163.9531 -344.6449 -2232.2126 921491.4634 -344.6449 -2232.2126
ENERGY: 476 19235.7863 20282.0279 5715.7683 184.0125 -336100.0918 23115.8473 0.0000 0.0000 45106.0633 -222460.5863 164.0835 -267566.6496 -222053.6139 164.0835 -92.4049 -2183.0653 921491.4634 -92.4049 -2183.0653
ENERGY: 477 19704.7251 20145.9818 5718.4976 185.9230 -336101.8803 23114.2945 0.0000 0.0000 44812.3206 -222420.1376 163.0149 -267232.4582 -222044.8413 163.0149 -667.4946 -2171.8229 921491.4634 -667.4946 -2171.8229
ENERGY: 478 20493.4777 19974.7642 5721.0254 187.7262 -336537.4047 23131.2465 0.0000 0.0000 44627.0331 -222402.1316 162.3409 -267029.1647 -222047.4108 162.3409 -1807.1604 -2198.7957 921491.4634 -1807.1604 -2198.7957
ENERGY: 479 21125.3056 19793.3959 5723.3295 189.2099 -337215.5847 23156.6777 0.0000 0.0000 44802.1577 -222425.5084 162.9779 -267227.6661 -222050.5461 162.9779 -3089.8516 -2246.7918 921491.4634 -3089.8516 -2246.7918
TIMING: 480 CPU: 225.553, 0.458619/step Wall: 225.553, 0.458619/step, 0.00254788 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 480 21624.0326 19623.1966 5725.3111 190.1901 -337854.6786 23181.5122 0.0000 0.0000 45051.6814 -222458.7546 163.8856 -267510.4361 -222064.6206 163.8856 -4077.7325 -2291.4890 921491.4634 -4077.7325 -2291.4890
ENERGY: 481 22092.4855 19510.0433 5727.0953 190.6351 -338199.2480 23196.7963 0.0000 0.0000 45041.3367 -222440.8559 163.8480 -267482.1926 -222052.5261 163.8480 -4466.2393 -2305.6731 921491.4634 -4466.2393 -2305.6731
ENERGY: 482 22186.3470 19466.6792 5728.4964 190.3598 -338044.5416 23192.7477 0.0000 0.0000 44865.8518 -222414.0596 163.2096 -267279.9114 -222051.4108 163.2096 -4059.3097 -2278.0613 921491.4634 -4059.3097 -2278.0613
ENERGY: 483 21553.1415 19511.5742 5729.5660 189.3227 -337426.2182 23165.8743 0.0000 0.0000 44861.8969 -222414.8425 163.1953 -267276.7394 -222048.7668 163.1953 -2964.1721 -2216.4114 921491.4634 -2964.1721 -2216.4114
ENERGY: 484 20460.8925 19631.1936 5730.2465 187.5455 -336590.8880 23126.1354 0.0000 0.0000 45003.6033 -222451.2712 163.7107 -267454.8745 -222059.8737 163.7107 -1565.2423 -2143.1848 921491.4634 -1565.2423 -2143.1848
ENERGY: 485 19688.7719 19800.2989 5730.5256 185.2458 -335902.5861 23092.8472 0.0000 0.0000 44955.5727 -222449.3241 163.5360 -267404.8967 -222045.9601 163.5360 -422.1566 -2086.8733 921491.4634 -422.1566 -2086.8733
ENERGY: 486 19602.5426 19954.8174 5729.7198 182.4662 -335612.3563 23080.3809 0.0000 0.0000 44645.9117 -222416.5176 162.4096 -267062.4294 -222044.6755 162.4096 87.3184 -2070.0980 921491.4634 87.3184 -2070.0980
ENERGY: 487 19881.0926 20072.0212 5727.4348 179.4360 -335846.4478 23091.0546 0.0000 0.0000 44503.3494 -222392.0594 161.8910 -266895.4088 -222045.2402 161.8910 -192.2343 -2106.8838 921491.4634 -192.2343 -2106.8838
ENERGY: 488 20125.2098 20156.1361 5723.5441 176.4338 -336552.5454 23118.8618 0.0000 0.0000 44827.0559 -222425.3038 163.0685 -267252.3598 -222057.1936 163.0685 -1145.7533 -2194.6679 921491.4634 -1145.7533 -2194.6679
ENERGY: 489 20526.8870 20236.4610 5718.5749 173.8639 -337540.4659 23156.7312 0.0000 0.0000 45266.1010 -222461.8470 164.6656 -267727.9480 -222045.6082 164.6656 -2511.2403 -2316.7066 921491.4634 -2511.2403 -2316.7066
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 490 21410.7489 20292.9023 5712.8912 171.8438 -338458.1368 23196.4879 0.0000 0.0000 45213.5636 -222459.6990 164.4745 -267673.2626 -222048.2205 164.4745 -3823.4038 -2437.4154 921491.4634 -3823.4038 -2437.4154
ENERGY: 491 22430.4642 20312.1363 5707.3795 170.5404 -338984.5804 23226.0939 0.0000 0.0000 44733.0096 -222404.9565 162.7264 -267137.9661 -222049.4635 162.7264 -4629.6934 -2524.6214 921491.4634 -4629.6934 -2524.6214
ENERGY: 492 22612.9551 20289.6814 5702.9945 170.0207 -338937.5830 23232.7207 0.0000 0.0000 44542.1957 -222387.0149 162.0323 -266929.2105 -222060.3858 162.0323 -4606.8524 -2557.4729 921491.4634 -4606.8524 -2557.4729
ENERGY: 493 21558.2191 20260.7378 5700.7779 170.3200 -338358.0649 23214.0539 0.0000 0.0000 45033.8236 -222420.1324 163.8207 -267453.9560 -222046.5899 163.8207 -3796.3819 -2540.0995 921491.4634 -3796.3819 -2540.0995
ENERGY: 494 20068.3367 20225.0265 5700.9806 171.2193 -337454.3850 23183.0798 0.0000 0.0000 45622.2483 -222483.4937 165.9612 -268105.7421 -222044.0866 165.9612 -2500.8992 -2482.1067 921491.4634 -2500.8992 -2482.1067
ENERGY: 495 19383.2463 20186.8305 5703.5926 172.5416 -336566.9900 23159.4629 0.0000 0.0000 45484.1238 -222477.1923 165.4587 -267961.3162 -222041.5561 165.4587 -1249.6836 -2407.3055 921491.4634 -1249.6836 -2407.3055
ENERGY: 496 19722.4835 20130.6475 5708.0350 174.0933 -335998.7169 23154.2640 0.0000 0.0000 44699.5276 -222409.6659 162.6046 -267109.1935 -222049.0670 162.6046 -478.8996 -2343.4750 921491.4634 -478.8996 -2343.4750
ENERGY: 497 20212.6668 20059.9178 5713.4613 175.7242 -335952.5054 23166.3550 0.0000 0.0000 44261.0293 -222363.3510 161.0095 -266624.3803 -222042.7500 161.0095 -421.0231 -2316.7927 921491.4634 -421.0231 -2316.7927
ENERGY: 498 20182.0163 19957.1216 5718.5597 177.2604 -336366.4943 23189.3590 0.0000 0.0000 44728.2541 -222413.9233 162.7091 -267142.1773 -222044.5219 162.7091 -993.4677 -2331.6472 921491.4634 -993.4677 -2331.6472
ENERGY: 499 20158.0676 19847.7308 5722.4090 178.6361 -337058.4834 23219.2410 0.0000 0.0000 45439.2651 -222493.1339 165.2956 -267932.3990 -222047.2062 165.2956 -2020.8685 -2376.3389 921491.4634 -2020.8685 -2376.3389
Info: Benchmark time: 4 CPUs 0.457827 s/step 5.29893 days/ns 3223.95 MB memory
TIMING: 500 CPU: 234.643, 0.454461/step Wall: 234.643, 0.454461/step, 0 hours remaining, 3223.953125 MB of memory in use.
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG PRESSURE GPRESSURE VOLUME PRESSAVG GPRESSAVG
ENERGY: 500 20974.8937 19756.6582 5724.4523 179.8271 -337741.4202 23251.1015 0.0000 0.0000 45359.0784 -222495.4090 165.0039 -267854.4873 -222061.0908 165.0039 -3197.5165 -2425.4139 921491.4634 -3197.5165 -2425.4139
WRITING EXTENDED SYSTEM TO OUTPUT FILE AT STEP 500
WRITING COORDINATES TO OUTPUT FILE AT STEP 500
The last position output (seq=-2) takes 0.002 seconds, 3229.566 MB of memory in use
WRITING VELOCITIES TO OUTPUT FILE AT STEP 500
The last velocity output (seq=-2) takes 0.002 seconds, 3229.566 MB of memory in use
====================================================
WallClock: 241.652878 CPUTime: 241.652878 Memory: 3229.566406 MB
[Partition 0][Node 0] End of program
Application 1109749 resources: utime ~949s, stime ~19s, Rss ~126688, inblocks ~66551, outblocks ~71876
Displaying status file:
verified
/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0
WALL=241.652878
CPU=241.652878
MEM=3229.566406
total 744
-rwxr-xr-x 1 bwjenkins BW_System 18 Dec 13 22:50 cputime
-rwxr-xr-x 1 bwjenkins BW_System 19 Dec 13 22:50 memory
-rwxr-xr-x 1 bwjenkins BW_System 18 Dec 13 22:50 wallclock
-rwxr-xr-x 1 bwjenkins BW_System 9 Dec 13 22:49 status
-rwxr-xr-x 1 bwjenkins BW_System 189500 Dec 13 22:49 test.log
-rwxr-xr-x 1 bwjenkins BW_System 505299 Dec 13 22:45 build.log
drwxr-xr-x 2 bwjenkins BW_System 4096 Dec 13 22:45 bin
drwxr-xr-x 11 bwjenkins BW_System 4096 Dec 13 22:35 NAMD_2.10_Source
drwxr-xr-x 5 bwjenkins BW_System 4096 Dec 13 22:22 man
drwxr-xr-x 2 bwjenkins BW_System 4096 Dec 13 22:22 include
drwxr-xr-x 4 bwjenkins BW_System 4096 Dec 13 22:22 lib
-rwxr-xr-x 1 bwjenkins BW_System 1987 Dec 13 22:21 build-notes
-rwxr-xr-x 1 bwjenkins BW_System 4016 Dec 13 22:21 rebuild
lrwxrwxrwx 1 bwjenkins BW_System 7 Dec 13 22:21 relink -> rebuild
-rwxr-xr-x 1 bwjenkins BW_System 761 Dec 13 22:21 remodule
-rwxr-xr-x 1 bwjenkins BW_System 2926 Dec 13 22:21 retest
drwxr-xr-x 12 bwjenkins BW_System 4096 Sep 8 2010 tcl8.5.9
[SSH] completed
[SSH] exit-status: 0
[workspace] $ /bin/sh -xe /tmp/jenkins2949551831209327083.sh
+ rm -rf /var/lib/jenkins/jobs/NAMD/workspace/cputime /var/lib/jenkins/jobs/NAMD/workspace/memory /var/lib/jenkins/jobs/NAMD/workspace/namd /var/lib/jenkins/jobs/NAMD/workspace/wallclock
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/cputime /var/lib/jenkins/jobs/NAMD/workspace
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/memory /var/lib/jenkins/jobs/NAMD/workspace
+ scp JYC_REMOTE:/scratch/system/bwjenkins/tests/namd/2.10/cle5.2_gnu5.1.0/wallclock /var/lib/jenkins/jobs/NAMD/workspace
Recording plot data
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/wallclock
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/cputime
Saving plot series data from: /var/lib/jenkins/jobs/NAMD/workspace/memory
Finished: SUCCESS