Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/SPP-Zelmani-jyc
[SPP-Zelmani-jyc] $ /bin/sh -xe /tmp/jenkins8736432308814534114.sh
+ /usr/local/bin/jenkins_sync /var/lib/jenkins/workspace/SPP-Zelmani-jyc
NCSA JYC System 
Access status: User Access UnRestricted.

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM

executing script:
PATH="/sw/tools/bin:/sw/tools/bin:$PATH"
SW_CONFIG="/scratch/system/bwjenkins/sw_config"
PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH"
SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir"

set -e
set -x

echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null
export SW_CONFIG=$SW_CONFIG

export SW_WORKDIR=$SW_WORKDIR

if true ; then
rm -rf $SW_WORKDIR/SPP-Zelmani
mkdir -p $SW_WORKDIR/SPP-Zelmani
cd $SW_WORKDIR/SPP-Zelmani
echo "Compiling on `hostname`"

# unpack and compile code
#cp ~/SPP-Zelmani/Zelmani.tar.gz  ./
cp ~arnoldg/Zelmani.tar.gz ./
tar xf Zelmani.tar.gz
cd Zelmani

sed 's/-A .*/-A jnc/;s/400/50/g' Zelmani400.qsub >Zelmani50.qsub

module unload PrgEnv-cray PrgEnv-gnu PrgEnv-intel PrgEnv-pathscale PrgEnv-pgi
module load PrgEnv-gnu
module load acml/5.3.1
module load atp
module load cray-hdf5/1.8.14
module load cudatoolkit/7.0.28-1.0502.10742.5.1
module load gsl/1.15.1
module load pmi
make -j4 sim-config options=options.cfg THORNLIST=thornlists/Zelmani.th PROMPT=no

# submit test simulation and wait for it to finish
JOB_ID=$(qsub Zelmani50.qsub)
while ! [ -r $JOB_ID.OU ] ; do
  sleep 60
done
cat  $JOB_ID.OU
tail -f  $JOB_ID.OU &
TAILPID=$!
while sleep 60 ; do
  if ! qstat $JOB_ID &>/dev/null ; then break ; fi
done
kill $TAILPID
else
cd $SW_WORKDIR/SPP-Zelmani/Zelmani
fi

gawk '/RunTime:/{print "YVALUE="$2}' Zelmani50/Timing.txt > $SW_WORKDIR/SPP-Zelmani/runtime.dat

+ echo /sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/cce/8.4.6/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.4.6/craylibs/x86-64/bin:/opt/cray/cce/8.4.6/cftn/bin:/opt/cray/cce/8.4.6/CC/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin /scratch/system/bwjenkins/sw_config /sw/tools/bin:/sw/tools/bin:/opt/xalt/0.7.6/sles11.3/libexec
+ export SW_CONFIG=/scratch/system/bwjenkins/sw_config
+ SW_CONFIG=/scratch/system/bwjenkins/sw_config
+ export SW_WORKDIR=/scratch/system/bwjenkins/sw_workdir
+ SW_WORKDIR=/scratch/system/bwjenkins/sw_workdir
+ true
+ rm -rf /scratch/system/bwjenkins/sw_workdir/SPP-Zelmani
+ mkdir -p /scratch/system/bwjenkins/sw_workdir/SPP-Zelmani
+ cd /scratch/system/bwjenkins/sw_workdir/SPP-Zelmani
++ hostname
+ echo 'Compiling on h2ologin3'
+ cp /u/staff/arnoldg/Zelmani.tar.gz ./
cp: cannot stat `/u/staff/arnoldg/Zelmani.tar.gz': No such file or directory
Compiling on h2ologin3
[SSH] exit-status: 1
Build step 'Execute shell script on remote host using ssh' marked build as failure
Recording plot data
No plot data file found: runtime.dat
Finished: FAILURE