Started by timer Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/cray-hdf5-parallel-jyc/workspace [SSH] script: module load cray-hdf5-parallel ~arnoldg/ior/myenv.sh mkdir hdf5-jenkins cd hdf5-jenkins rm -rf * cp ~arnoldg/hdf5/ph5example.c . cc -o ph5example ph5example.c echo "#!/bin/bash" > hdf5.pbs echo "#PBS -lnodes=2:ppn=16:xe,walltime=00:05:00 -Nhdf5-p" >> hdf5.pbs echo "cd ~/hdf5-jenkins" >> hdf5.pbs echo "aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out" >> hdf5.pbs echo "aprun -n 1 hostname > stream-compute-node" >> hdf5.pbs cat -n hdf5.pbs MYJOBID=`qsub hdf5.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID # do some validation module unload cray-hdf5-parallel module load cray-hdf5 h5dump ParaEg0.h5 cat ph5example.out echo "=== JOB RAN ON ===" cat ~/hdf5-jenkins/stream-compute-node rm -f ~/hdf5-jenkins/stream-compute-node [SSH] executing... mkdir: cannot create directory `hdf5-jenkins': File exists === RUNNING /u/staff/arnoldg/ior/myenv.sh === HOST=jyc1 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest setsm_benchmark SPP-PPM stripe8 sw_config sw_workdir test.log tests my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.5 2) nodestat/2.2-1.0502.60539.1.31.gem 3) sdb/1.1-1.0502.63652.4.27.gem 4) alps/5.2.4-2.0502.9774.31.12.gem 5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.45.1-1.0502.21728.75.4 6) udreg/2.3.2-1.0502.10518.2.17.gem 7) ugni/6.0-1.0502.10863.8.28.gem 8) gni-headers/4.0-1.0502.10859.9.27.gem 9) dmapp/7.0.1-1.0502.11080.8.74.gem 10) xpmem/0.1-2.0502.64982.7.27.gem 11) hss-llm/7.2.0 12) Base-opts/1.0.2-1.0502.60680.2.4.gem 13) cce/8.7.7 14) craype-network-gemini 15) craype/2.5.16 16) cray-libsci/18.12.1 17) pmi/5.0.11 18) rca/1.0.0-2.0502.60530.1.63.gem 19) atp/2.1.0 20) PrgEnv-cray/5.2.82 21) moab/9.1.2.h6-sles11 22) torque/6.1.2 23) craype-interlagos 24) cray-mpich/7.7.4 25) openssh/7.5p1 26) xalt/0.7.6.local 27) scripts 28) OpenSSL/1.0.2m 29) cURL/7.59.0 30) git/2.17.0 31) wget/1.19.4 32) user-paths 33) gnuplot/5.0.5 34) darshan/3.1.3-longusername 35) cray-hdf5-parallel/1.10.0.1 1 #!/bin/bash 2 #PBS -lnodes=2:ppn=16:xe,walltime=00:05:00 -Nhdf5-p 3 cd ~/hdf5-jenkins 4 aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out 5 aprun -n 1 hostname > stream-compute-node INFO: Job submitted to account: jnc MYJOBID=570445.jyc === RUNNING /u/staff/arnoldg/ior/wait_for.sh === Wed Jan 6 18:51:05 CST 2021: waiting for 570445.jyc to finish Wed Jan 6 18:56:05 CST 2021: waiting for 570445.jyc to finish qstat: Unknown Job Id Error 570445.nid00030 570445.jyc finished HDF5 "ParaEg0.h5" { GROUP "/" { DATASET "Data1" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 24, 24 ) / ( 24, 24 ) } DATA { (0,0): 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, (0,18): 19, 20, 21, 22, 23, 24, (1,0): 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, (1,13): 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, (2,0): 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, (2,13): 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, (3,0): 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, (3,13): 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, (4,0): 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, (4,13): 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, (5,0): 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, (5,13): 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, (6,0): 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, (6,13): 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, (7,0): 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, (7,13): 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, (8,0): 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, (8,13): 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, (9,0): 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, (9,13): 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, (10,0): 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, (10,10): 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, (10,20): 1021, 1022, 1023, 1024, (11,0): 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1109, 1110, (11,10): 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, (11,20): 1121, 1122, 1123, 1124, (12,0): 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, (12,10): 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, (12,20): 1221, 1222, 1223, 1224, (13,0): 1301, 1302, 1303, 1304, 1305, 1306, 1307, 1308, 1309, 1310, (13,10): 1311, 1312, 1313, 1314, 1315, 1316, 1317, 1318, 1319, 1320, (13,20): 1321, 1322, 1323, 1324, (14,0): 1401, 1402, 1403, 1404, 1405, 1406, 1407, 1408, 1409, 1410, (14,10): 1411, 1412, 1413, 1414, 1415, 1416, 1417, 1418, 1419, 1420, (14,20): 1421, 1422, 1423, 1424, (15,0): 1501, 1502, 1503, 1504, 1505, 1506, 1507, 1508, 1509, 1510, (15,10): 1511, 1512, 1513, 1514, 1515, 1516, 1517, 1518, 1519, 1520, (15,20): 1521, 1522, 1523, 1524, (16,0): 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 1609, 1610, (16,10): 1611, 1612, 1613, 1614, 1615, 1616, 1617, 1618, 1619, 1620, (16,20): 1621, 1622, 1623, 1624, (17,0): 1701, 1702, 1703, 1704, 1705, 1706, 1707, 1708, 1709, 1710, (17,10): 1711, 1712, 1713, 1714, 1715, 1716, 1717, 1718, 1719, 1720, (17,20): 1721, 1722, 1723, 1724, (18,0): 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, (18,10): 1811, 1812, 1813, 1814, 1815, 1816, 1817, 1818, 1819, 1820, (18,20): 1821, 1822, 1823, 1824, (19,0): 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909, 1910, (19,10): 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919, 1920, (19,20): 1921, 1922, 1923, 1924, (20,0): 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, (20,10): 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, (20,20): 2021, 2022, 2023, 2024, (21,0): 2101, 2102, 2103, 2104, 2105, 2106, 2107, 2108, 2109, 2110, (21,10): 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, (21,20): 2121, 2122, 2123, 2124, (22,0): 2201, 2202, 2203, 2204, 2205, 2206, 2207, 2208, 2209, 2210, (22,10): 2211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2219, 2220, (22,20): 2221, 2222, 2223, 2224, (23,0): 2301, 2302, 2303, 2304, 2305, 2306, 2307, 2308, 2309, 2310, (23,10): 2311, 2312, 2313, 2314, 2315, 2316, 2317, 2318, 2319, 2320, (23,20): 2321, 2322, 2323, 2324 } } DATASET "Data2" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 24, 24 ) / ( 24, 24 ) } DATA { (0,0): 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, (0,18): 19, 20, 21, 22, 23, 24, (1,0): 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, (1,13): 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, (2,0): 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, (2,13): 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, (3,0): 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, (3,13): 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, (4,0): 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, (4,13): 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, (5,0): 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, (5,13): 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, (6,0): 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, (6,13): 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, (7,0): 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, (7,13): 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, (8,0): 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, (8,13): 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, (9,0): 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, (9,13): 914, 915, 916, 917, 918, 919, 920, 921, 922, 923, 924, (10,0): 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008, 1009, 1010, (10,10): 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, (10,20): 1021, 1022, 1023, 1024, (11,0): 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1109, 1110, (11,10): 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, (11,20): 1121, 1122, 1123, 1124, (12,0): 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1210, (12,10): 1211, 1212, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, (12,20): 1221, 1222, 1223, 1224, (13,0): 1301, 1302, 1303, 1304, 1305, 1306, 1307, 1308, 1309, 1310, (13,10): 1311, 1312, 1313, 1314, 1315, 1316, 1317, 1318, 1319, 1320, (13,20): 1321, 1322, 1323, 1324, (14,0): 1401, 1402, 1403, 1404, 1405, 1406, 1407, 1408, 1409, 1410, (14,10): 1411, 1412, 1413, 1414, 1415, 1416, 1417, 1418, 1419, 1420, (14,20): 1421, 1422, 1423, 1424, (15,0): 1501, 1502, 1503, 1504, 1505, 1506, 1507, 1508, 1509, 1510, (15,10): 1511, 1512, 1513, 1514, 1515, 1516, 1517, 1518, 1519, 1520, (15,20): 1521, 1522, 1523, 1524, (16,0): 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 1609, 1610, (16,10): 1611, 1612, 1613, 1614, 1615, 1616, 1617, 1618, 1619, 1620, (16,20): 1621, 1622, 1623, 1624, (17,0): 1701, 1702, 1703, 1704, 1705, 1706, 1707, 1708, 1709, 1710, (17,10): 1711, 1712, 1713, 1714, 1715, 1716, 1717, 1718, 1719, 1720, (17,20): 1721, 1722, 1723, 1724, (18,0): 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, 1810, (18,10): 1811, 1812, 1813, 1814, 1815, 1816, 1817, 1818, 1819, 1820, (18,20): 1821, 1822, 1823, 1824, (19,0): 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909, 1910, (19,10): 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919, 1920, (19,20): 1921, 1922, 1923, 1924, (20,0): 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, (20,10): 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, (20,20): 2021, 2022, 2023, 2024, (21,0): 2101, 2102, 2103, 2104, 2105, 2106, 2107, 2108, 2109, 2110, (21,10): 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, (21,20): 2121, 2122, 2123, 2124, (22,0): 2201, 2202, 2203, 2204, 2205, 2206, 2207, 2208, 2209, 2210, (22,10): 2211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2219, 2220, (22,20): 2221, 2222, 2223, 2224, (23,0): 2301, 2302, 2303, 2304, 2305, 2306, 2307, 2308, 2309, 2310, (23,10): 2311, 2312, 2313, 2314, 2315, 2316, 2317, 2318, 2319, 2320, (23,20): 2321, 2322, 2323, 2324 } } } } -------------------------------- Proc 1: *** testing PHDF5 dataset using split communicators... -------------------------------- Parallel test files are: ./ParaEg0.h5 ./ParaEg1.h5 -------------------------------- Proc 0: *** testing PHDF5 dataset using split communicators... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset collective write... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset collective write... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent read... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent read... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset collective read... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset collective read... -------------------------------- =================================== PHDF5 tests finished with no errors =================================== Application 1000528 resources: utime ~0s, stime ~1s, Rss ~8528, inblocks ~11228, outblocks ~28537 === JOB RAN ON === nid00062 Application 1000529 resources: utime ~0s, stime ~1s, Rss ~6716, inblocks ~19, outblocks ~28 [SSH] completed [SSH] exit-status: 0 [workspace] $ /bin/sh -xe /tmp/jenkins4700672769563683474.sh + scp 'JYC_REMOTE:~/hdf5-jenkins/*' /var/lib/jenkins/jobs/cray-hdf5-parallel-jyc/workspace [workspace] $ /bin/sh -xe /tmp/jenkins7928492667028799861.sh + env BUILD_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/253/ BW_REMOTE_4=BW_REMOTE_4 BW_REMOTE_3=BW_REMOTE_3 BW_REMOTE_2=BW_REMOTE_2 HUDSON_SERVER_COOKIE=1f7dff723b211f5c SHELL=/bin/bash BW_REMOTE_1=BW_REMOTE_1 BUILD_TAG=jenkins-cray-hdf5-parallel-jyc-253 SW_WORKDIR=/scratch/system/bwjenkins/sw_workdir WORKSPACE=/var/lib/jenkins/jobs/cray-hdf5-parallel-jyc/workspace JOB_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/ RUN_CHANGES_DISPLAY_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/253/display/redirect?page=changes USER=jenkins RUN_ARTIFACTS_DISPLAY_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/253/display/redirect?page=artifacts JENKINS_HOME=/var/lib/jenkins PATH=/sw/tools/bin:/sw/tools/bin:/sbin:/usr/sbin:/bin:/usr/bin RUN_DISPLAY_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/253/display/redirect _=/bin/env SW_CONFIG=/scratch/system/bwjenkins/sw_config PWD=/var/lib/jenkins/jobs/cray-hdf5-parallel-jyc/workspace HUDSON_URL=http://bwjenkins.ncsa.illinois.edu/ LANG=en_US.UTF-8 JOB_NAME=cray-hdf5-parallel-jyc BW_REMOTE=BW_REMOTE BUILD_DISPLAY_NAME=#253 JYC_REMOTE=JYC_REMOTE JENKINS_URL=http://bwjenkins.ncsa.illinois.edu/ BUILD_ID=253 JOB_BASE_NAME=cray-hdf5-parallel-jyc RUN_TESTS_DISPLAY_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/253/display/redirect?page=tests SHLVL=6 HOME=/var/lib/jenkins EXECUTOR_NUMBER=3 SW_ROOT=/scratch/system/bwjenkins/tests JENKINS_SERVER_COOKIE=1f7dff723b211f5c WORKSPACE_TMP=/var/lib/jenkins/jobs/cray-hdf5-parallel-jyc/workspace@tmp NODE_LABELS=master PYTHONPATH=/sw/tools/bin:/sw/tools/bin:$PYTHONPATH LOGNAME=jenkins HUDSON_HOME=/var/lib/jenkins NODE_NAME=master JOB_DISPLAY_URL=http://bwjenkins.ncsa.illinois.edu/job/cray-hdf5-parallel-jyc/display/redirect BUILD_NUMBER=253 HUDSON_COOKIE=5e93ae60-f68b-4de3-adaf-49cdb1b7e6ec + uname -a Linux bwjenkins.ncsa.illinois.edu 2.6.32-754.31.1.el6.centos.plus.x86_64 #1 SMP Thu Jul 16 14:18:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux + java -version openjdk version "1.8.0_252" OpenJDK Runtime Environment (build 1.8.0_252-b09) OpenJDK 64-Bit Server VM (build 25.252-b09, mixed mode) Finished: SUCCESS