Started by timer Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/mdtest-h2ologin2_scratch/workspace [SSH] script: ~/bin/myenv.sh mkdir mdtest-jenkins cd mdtest-jenkins rm -rf * git clone https://github.com/MDTEST-LANL/mdtest cd mdtest make CC=cc echo "#!/bin/bash" > mdtest.pbs echo "#PBS -lnodes=4:ppn=6:xe,walltime=00:15:00 -Nmdtest" >> mdtest.pbs echo "cd ~/scratch" >> mdtest.pbs echo "rm -rf mdtest" >> mdtest.pbs echo "mkdir mdtest" >> mdtest.pbs echo "cd mdtest" >> mdtest.pbs echo "aprun -n 24 ~/mdtest-jenkins/mdtest/mdtest -n 2000 -v -d ~/scratch/mdtest > myout" >> mdtest.pbs echo "grep ops myout | grep read | cut -d, -f2 | cut -do -f1 > mdtest.datB" >> mdtest.pbs echo "echo YVALUE= > mdtest.datA" >> mdtest.pbs echo "paste mdtest.datA mdtest.datB > mdtest.read" >> mdtest.pbs echo "grep ops myout | grep removal | grep File | cut -d, -f2 | cut -do -f1 > mdtestrm.datB" >> mdtest.pbs echo "paste mdtest.datA mdtestrm.datB > mdtest.filerm" >> mdtest.pbs echo "aprun -n 4 -N 1 hostname > mdtest-compute-nodes" >> mdtest.pbs cat -n mdtest.pbs MYJOBID=`qsub mdtest.pbs` echo MYJOBID=$MYJOBID ~/bin/wait_for.sh $MYJOBID echo "=== JOB RAN ON ===" cat ~/scratch/mdtest/mdtest-compute-nodes if [ -f ~/scratch/mdtest/mdtest-compute-nodes ] then : # it's all good else echo "mdtest-compute-nodes not found, pbs job likely hit walltime" exit 1 fi rm -f ~/scratch/mdtest/mdtest-compute-nodes [SSH] executing... mkdir: cannot create directory `mdtest-jenkins': File exists Cloning into 'mdtest'... === RUNNING /u/system/bwjenkins/bin/myenv.sh === HOST=h2ologin2 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest rmg-spp rmg-spp-topo setsm_benchmark setsm_rsync SPP-PPM stripe8 sw_config SWTools-BWCI sw_workdir tests wrf wrf-spp my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.4 2) eswrap/1.3.3-1.020200.1280.0 3) cce/8.7.7 4) craype-network-gemini 5) craype/2.5.16 6) cray-libsci/18.12.1 7) udreg/2.3.2-1.0502.10518.2.17.gem 8) ugni/6.0-1.0502.10863.8.28.gem 9) pmi/5.0.14 10) dmapp/7.0.1-1.0502.11080.8.74.gem 11) gni-headers/4.0-1.0502.10859.7.8.gem 12) xpmem/0.1-2.0502.64982.5.3.gem 13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem 14) alps/5.2.4-2.0502.9774.31.12.gem 15) rca/1.0.0-2.0502.60530.1.63.gem 16) atp/2.0.4 17) PrgEnv-cray/5.2.82 18) cray-mpich/7.7.4 19) craype-interlagos 20) torque/6.0.4 21) moab/9.1.2-sles11 22) openssh/7.5p1 23) xalt/0.7.6.local 24) scripts 25) OpenSSL/1.0.2m 26) cURL/7.59.0 27) git/2.17.0 28) wget/1.19.4 29) user-paths 30) gnuplot/5.0.5 31) darshan/3.1.3 make: *** No targets specified and no makefile found. Stop. 1 #!/bin/bash 2 #PBS -lnodes=4:ppn=6:xe,walltime=00:15:00 -Nmdtest 3 cd ~/scratch 4 rm -rf mdtest 5 mkdir mdtest 6 cd mdtest 7 aprun -n 24 ~/mdtest-jenkins/mdtest/mdtest -n 2000 -v -d ~/scratch/mdtest > myout 8 grep ops myout | grep read | cut -d, -f2 | cut -do -f1 > mdtest.datB 9 echo YVALUE= > mdtest.datA 10 paste mdtest.datA mdtest.datB > mdtest.read 11 grep ops myout | grep removal | grep File | cut -d, -f2 | cut -do -f1 > mdtestrm.datB 12 paste mdtest.datA mdtestrm.datB > mdtest.filerm 13 aprun -n 4 -N 1 hostname > mdtest-compute-nodes INFO: Job submitted to account: jnc MYJOBID=12519758.bw === RUNNING /u/system/bwjenkins/bin/wait_for.sh === Sat Aug 14 03:08:06 CDT 2021: waiting for 12519758.bw to finish Sat Aug 14 03:13:06 CDT 2021: waiting for 12519758.bw to finish qstat: Unknown Job Id Error 12519758.bw 12519758.bw finished === JOB RAN ON === nid05569 nid05663 nid05661 nid05660 Application 102720816 resources: utime ~0s, stime ~4s, Rss ~25460, inblocks ~76, outblocks ~112 [SSH] completed [SSH] exit-status: 0 Finished: SUCCESS