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Started by user arnoldg Building on master in workspace /var/lib/jenkins/workspace/rmg-spp-newpe executing script: PATH="/sw/tools/bin:/sw/tools/bin:$PATH" HOME="/var/lib/jenkins" set -v # specify installation directory export INSTDIR=~/rmg-spp #rm -rf $INSTDIR mkdir $INSTDIR module swap PrgEnv-cray PrgEnv-gnu module swap gcc gcc/4.9.3 module load boost module load cmake/3.1.3 module load fftw # begin newpe testing module unload cce cray-mpich module load cce/8.5.5 module load cray-mpich/7.5.0 module unload fftw module load fftw/3.3.4.10 # end newpe testing export CRAYPE_LINK_TYPE=dynamic export CRAY_ADD_RPATH=yes # install openbabel library cd $INSTDIR wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz tar zxvf openbabel-2.3.2.tar.gz cd openbabel-2.3.2/ mkdir build cd build/ cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/openbabel-2.3.2/install .. nice make -j8 make install export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib export CC=cc export CXX=CC export FC=ftn # install plplot library cd $INSTDIR git clone git://git.code.sf.net/p/plplot/plplot plplot.git cd plplot.git/ mkdir build cd build cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/plplot.git/install .. make make install # install CPU-version of RMG cd $INSTDIR wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz tar zxvf rmg-release_2.1.tar.gz cd rmg-release_2.1 mkdir build-cpu; cd build-cpu cmake -DOPENBABEL_INCLUDES=$INSTDIR/openbabel-2.3.2/install/include/openbabel-2.0/openbabel -DOPENBABEL_LIBRARIES=$INSTDIR/openbabel-2.3.2/install/lib/libopenbabel.so.4.0.2 -DPLplot_INCLUDE_DIR=$INSTDIR/plplot.git/install/include -DPLplot_cxx_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplotcxx.so -DPLplot_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplot.so .. nice make -j12 rmg-cpu rm -rf ~/scratch/rmg-spp mkdir -p ~/scratch/rmg-spp #cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs #cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/ cp /projects/bluewaters/benchmarking/SPP/rmg/small/* ~/scratch/rmg-spp/ cd ~/scratch/rmg-spp cp ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu ./ cat run.pbs | sed -e "s/aprun/time aprun/g" > myrunA.pbs cat myrunA.pbs | sed -e "s/OMP_NUM_THREADS=1/OM_NUM_THREADS=1\nexport LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:\$HOME\/rmg-spp\/openbabel-2.3.2\/install\/lib/g" > myrun.pbs cat -n myrun.pbs MYJOBID=`qsub myrun.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID tail *.log > ~/rmg-spp/rmg.logtail.txt grep "real" z302water_cpu100.o* MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime cat -n ~/rmg-spp/rmg.realtime # specify installation directory export INSTDIR=~/rmg-spp #rm -rf $INSTDIR mkdir $INSTDIR mkdir: cannot create directory `/var/lib/jenkins/rmg-spp': No such file or directory module swap PrgEnv-cray PrgEnv-gnu ${MODULESHOME}/bin/modulecmd bash $* ATP_HOME=/opt/cray/atp/2.0.1 ;export ATP_HOME;ATP_IGNORE_SIGTERM=1 ;export ATP_IGNORE_SIGTERM;ATP_MRNET_COMM_PATH=/opt/cray/atp/2.0.1/libexec/atp_mrnet_commnode_wrapper ;export ATP_MRNET_COMM_PATH;ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/2.0.1/libApp/\ ;export ATP_POST_LINK_OPTS;CRAYOS_VERSION=5.2.82 ;export CRAYOS_VERSION;CRAYPE_DIR=/opt/cray/craype/2.5.4 ;export CRAYPE_DIR;CRAYPE_NETWORK_TARGET=gemini ;export CRAYPE_NETWORK_TARGET;CRAYPE_VERSION=2.5.4 ;export CRAYPE_VERSION;CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include ;export CRAY_ALPS_INCLUDE_OPTS;CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 ;export CRAY_ALPS_POST_LINK_OPTS;CRAY_CPU_TARGET=interlagos ;export CRAY_CPU_TARGET;CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/include\ -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include\ ;export CRAY_DMAPP_INCLUDE_OPTS;CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64 ;export CRAY_DMAPP_POST_LINK_OPTS;CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include ;export CRAY_GNI_HEADERS_INCLUDE_OPTS;CRAY_LD_LIBRARY_PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib:/opt/cray/mpt/7.3.3/gni/mpich-gnu/4.9/lib ;export CRAY_LD_LIBRARY_PATH;CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/16.03.1 ;export CRAY_LIBSCI_BASE_DIR;CRAY_LIBSCI_DIR=/opt/cray/libsci/16.03.1 ;export CRAY_LIBSCI_DIR;CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/16.03.1/GNU/4.9/x86_64 ;export CRAY_LIBSCI_PREFIX_DIR;CRAY_LIBSCI_VERSION=16.03.1 ;export CRAY_LIBSCI_VERSION;CRAY_MPICH2_DIR=/opt/cray/mpt/7.3.3/gni/mpich-gnu/4.9 ;export CRAY_MPICH2_DIR;CRAY_MPICH2_VER=7.3.3 ;export CRAY_MPICH2_VER;CRAY_MPICH_BASEDIR=/opt/cray/mpt/7.3.3/gni ;export CRAY_MPICH_BASEDIR;CRAY_MPICH_DIR=/opt/cray/mpt/7.3.3/gni/mpich-gnu/4.9 ;export CRAY_MPICH_DIR;CRAY_MPICH_ROOTDIR=/opt/cray/mpt/7.3.3 ;export CRAY_MPICH_ROOTDIR;CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/include ;export CRAY_PMI_INCLUDE_OPTS;CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64 ;export CRAY_PMI_POST_LINK_OPTS;CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini ;export CRAY_PRE_COMPILE_OPTS;CRAY_PRGENVGNU=loaded ;export CRAY_PRGENVGNU;CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include\ -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include\ -I/opt/cray-hss-devel/7.2.0/include\ ;export CRAY_RCA_INCLUDE_OPTS;CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64\ -lrca\ ;export CRAY_RCA_POST_LINK_OPTS;CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/include ;export CRAY_UDREG_INCLUDE_OPTS;CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64 ;export CRAY_UDREG_POST_LINK_OPTS;CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include ;export CRAY_UGNI_INCLUDE_OPTS;CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64 ;export CRAY_UGNI_POST_LINK_OPTS;CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/include ;export CRAY_XPMEM_INCLUDE_OPTS;CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64 ;export CRAY_XPMEM_POST_LINK_OPTS;DMAPP_ABORT_ON_ERROR=1 ;export DMAPP_ABORT_ON_ERROR;DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/include ;export DVS_INCLUDE_OPTS;DVS_VERSION=0.9.0 ;export DVS_VERSION;GCC_PATH=/opt/gcc/4.9.3 ;export GCC_PATH;GCC_VERSION=4.9.3 ;export GCC_VERSION;GNU_VERSION=4.9.3 ;export GNU_VERSION;INFOPATH=/opt/gcc/4.9.3/snos/share/info:/usr/local/info:/usr/share/info:/usr/info ;export INFOPATH;LD_LIBRARY_PATH=/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib:/usr/local/globus-5.2.5/lib64:/opt/torque/6.0.1-end/lib:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LIBSCI_BASE_DIR=/opt/cray/libsci/16.03.1 ;export LIBSCI_BASE_DIR;LIBSCI_VERSION=16.03.1 ;export LIBSCI_VERSION;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:cray-mpich/7.3.3:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82 ;export LOADEDMODULES;MANPATH=/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/mpt/7.3.3/gni/man/mpich:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;MODULEPATH=/sw/bw/modulefiles:/sw/xe/modulefiles:/usr/local/modulefiles:/opt/cray/gem/modulefiles:/opt/cray/craype/2.5.4/modulefiles:/opt/cray/modulefiles:/opt/modulefiles ;export MODULEPATH;MPICH_ABORT_ON_ERROR=1 ;export MPICH_ABORT_ON_ERROR;MPICH_DIR=/opt/cray/mpt/7.3.3/gni/mpich-gnu/4.9 ;export MPICH_DIR;PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/mpt/7.3.3/gni/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_ACML_DEFAULT_DIR_CRAY=gfortran64 ;export PE_ACML_DEFAULT_DIR_CRAY;PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 ;export PE_ACML_DEFAULT_DIR_DEFAULT64;PE_ACML_DEFAULT_DIR_GNU=gfortran64 ;export PE_ACML_DEFAULT_DIR_GNU;PE_ACML_DEFAULT_DIR_INTEL=ifort64 ;export PE_ACML_DEFAULT_DIR_INTEL;PE_ACML_DEFAULT_DIR_OPENMP=_mp ;export PE_ACML_DEFAULT_DIR_OPENMP;PE_ACML_DEFAULT_DIR_PGI=pgi64 ;export PE_ACML_DEFAULT_DIR_PGI;PE_ACML_DEFAULT_TARGET_interlagos=_fma4 ;export PE_ACML_DEFAULT_TARGET_interlagos;PE_ACML_DEFAULT_TARGET_x86_64= ;export PE_ACML_DEFAULT_TARGET_x86_64;PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig ;export PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/CRAY/8.3/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.0/CRAY/8.3/lib/pkgconfig:/opt/cray/netcdf/4.4.0/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.16/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5/1.8.16/CRAY/8.3/lib/pkgconfig:/opt/cray/ga/5.3.0.6/CRAY/8.3/lib/pkgconfig ;export PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH;PE_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_CXX_PKGCONFIG_LIBS;PE_ENV=GNU ;export PE_ENV;PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_FFTW_DEFAULT_REQUIRED_PRODUCTS;PE_FFTW_DEFAULT_TARGET_broadwell=broadwell ;export PE_FFTW_DEFAULT_TARGET_broadwell;PE_FFTW_DEFAULT_TARGET_haswell=haswell ;export PE_FFTW_DEFAULT_TARGET_haswell;PE_FFTW_DEFAULT_TARGET_interlagos=interlagos ;export PE_FFTW_DEFAULT_TARGET_interlagos;PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl ;export PE_FFTW_DEFAULT_TARGET_mic_knl;PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge ;export PE_FFTW_DEFAULT_TARGET_sandybridge;PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 ;export PE_FFTW_DEFAULT_TARGET_x86_64;PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.4.7/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig ;export PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_FORTRAN_PKGCONFIG_LIBS;PE_GA_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_GA_DEFAULT_FIXED_PRGENV;PE_GA_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_GA_DEFAULT_GENCOMPILERS_GNU;PE_GA_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_GA_DEFAULT_GENCOMPS_GNU;PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.3.0.6/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_GA_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_GA_DEFAULT_VOLATILE_PRGENV;PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY\ PGI ;export PE_HDF5_DEFAULT_FIXED_PRGENV;PE_HDF5_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_HDF5_DEFAULT_GENCOMPILERS_GNU;PE_HDF5_DEFAULT_GENCOMPILERS_INTEL=15.0\ 14.0 ;export PE_HDF5_DEFAULT_GENCOMPILERS_INTEL;PE_HDF5_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_HDF5_DEFAULT_GENCOMPS_GNU;PE_HDF5_DEFAULT_GENCOMPS_INTEL=150\ 140 ;export PE_HDF5_DEFAULT_GENCOMPS_INTEL;PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_HDF5_DEFAULT_REQUIRED_PRODUCTS;PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.8.16/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU\ INTEL ;export PE_HDF5_DEFAULT_VOLATILE_PRGENV;PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY\ PGI ;export PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV;PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU;PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_INTEL=15.0\ 14.0 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_INTEL;PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU;PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_INTEL=150\ 140 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_INTEL;PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS;PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.8.16/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU\ INTEL ;export PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV;PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/INTEL/15.0/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.0/INTEL/15.0/lib/pkgconfig:/opt/cray/netcdf/4.4.0/INTEL/15.0/lib/pkgconfig:/opt/cray/mpt/7.3.3/gni/mpich-intel/15.0/lib/pkgconfig:/opt/cray/ga/5.3.0.6/INTEL/15.0/lib/pkgconfig ;export PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH;PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64=4.9 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=49 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64;PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 ;export PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20;PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 ;export PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35;PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ ;export PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES;PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS;PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/16.03.1/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig ;export PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU ;export PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV;PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.1 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_mic_knl=15.0 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_GNU_mic_knl=51 ;export PE_LIBSCI_DEFAULT_GENCOMPS_GNU_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_mic_knl=150 ;export PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64;PE_LIBSCI_DEFAULT_OMP_REQUIRES= ;export PE_LIBSCI_DEFAULT_OMP_REQUIRES;PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp ;export PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp;PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ ;export PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES;PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS;PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/16.03.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig ;export PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU\ INTEL\ PGI ;export PE_LIBSCI_DEFAULT_VOLATILE_PRGENV;PE_LIBSCI_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_LIBSCI_GENCOMPILERS_CRAY_mic_knl;PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_GENCOMPILERS_GNU_mic_knl=5.1 ;export PE_LIBSCI_GENCOMPILERS_GNU_mic_knl;PE_LIBSCI_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_LIBSCI_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_GENCOMPILERS_INTEL_mic_knl=15.0 ;export PE_LIBSCI_GENCOMPILERS_INTEL_mic_knl;PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_LIBSCI_GENCOMPILERS_INTEL_x86_64;PE_LIBSCI_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_LIBSCI_GENCOMPILERS_PGI_x86_64;PE_LIBSCI_GENCOMPS_CRAY_mic_knl=85 ;export PE_LIBSCI_GENCOMPS_CRAY_mic_knl;PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_GENCOMPS_CRAY_x86_64;PE_LIBSCI_GENCOMPS_GNU_mic_knl=51 ;export PE_LIBSCI_GENCOMPS_GNU_mic_knl;PE_LIBSCI_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_LIBSCI_GENCOMPS_GNU_x86_64;PE_LIBSCI_GENCOMPS_INTEL_mic_knl=150 ;export PE_LIBSCI_GENCOMPS_INTEL_mic_knl;PE_LIBSCI_GENCOMPS_INTEL_x86_64=150 ;export PE_LIBSCI_GENCOMPS_INTEL_x86_64;PE_LIBSCI_GENCOMPS_PGI_x86_64=153 ;export PE_LIBSCI_GENCOMPS_PGI_x86_64;PE_LIBSCI_MODULE_NAME=cray-libsci/16.03.1 ;export PE_LIBSCI_MODULE_NAME;PE_LIBSCI_OMP_REQUIRES= ;export PE_LIBSCI_OMP_REQUIRES;PE_LIBSCI_OMP_REQUIRES_openmp=_mp ;export PE_LIBSCI_OMP_REQUIRES_openmp;PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci ;export PE_LIBSCI_PKGCONFIG_LIBS;PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ ;export PE_LIBSCI_PKGCONFIG_VARIABLES;PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH ;export PE_LIBSCI_REQUIRED_PRODUCTS;PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/16.03.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig ;export PE_LIBSCI_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_VOLATILE_PRGENV=CRAY\ GNU\ INTEL\ PGI ;export PE_LIBSCI_VOLATILE_PRGENV;PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_MPICH_CXX_PKGCONFIG_LIBS;PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 ;export PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64;PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 ;export PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64;PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL ;export PE_MPICH_DEFAULT_FIXED_PRGENV;PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.3 ;export PE_MPICH_DEFAULT_GENCOMPILERS_CRAY;PE_MPICH_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_MPICH_DEFAULT_GENCOMPILERS_GNU;PE_MPICH_DEFAULT_GENCOMPILERS_PGI=15.3 ;export PE_MPICH_DEFAULT_GENCOMPILERS_PGI;PE_MPICH_DEFAULT_GENCOMPS_CRAY=83 ;export PE_MPICH_DEFAULT_GENCOMPS_CRAY;PE_MPICH_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_MPICH_DEFAULT_GENCOMPS_GNU;PE_MPICH_DEFAULT_GENCOMPS_PGI=153 ;export PE_MPICH_DEFAULT_GENCOMPS_PGI;PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.3.3/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU\ PGI ;export PE_MPICH_DEFAULT_VOLATILE_PRGENV;PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_MPICH_FORTRAN_PKGCONFIG_LIBS;PE_MPICH_MODULE_NAME=cray-mpich ;export PE_MPICH_MODULE_NAME;PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt ;export PE_MPICH_MULTITHREADED_LIBS_multithreaded;PE_MPICH_NV_LIBS= ;export PE_MPICH_NV_LIBS;PE_MPICH_NV_LIBS_nvidia20=-lcudart ;export PE_MPICH_NV_LIBS_nvidia20;PE_MPICH_NV_LIBS_nvidia35=-lcudart ;export PE_MPICH_NV_LIBS_nvidia35;PE_MPICH_PKGCONFIG_LIBS=mpich ;export PE_MPICH_PKGCONFIG_LIBS;PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ ;export PE_MPICH_PKGCONFIG_VARIABLES;PE_MPICH_TARGET_VAR_nvidia20=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia20;PE_MPICH_TARGET_VAR_nvidia35=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia35;PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_NETCDF_DEFAULT_FIXED_PRGENV;PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_NETCDF_DEFAULT_GENCOMPILERS_GNU;PE_NETCDF_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_NETCDF_DEFAULT_GENCOMPS_GNU;PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 ;export PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS;PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.4.0/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_NETCDF_DEFAULT_VOLATILE_PRGENV;PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV;PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU;PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU;PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL:PE_MPICH ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS;PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.4.0/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV;PE_PAPI_DEFAULT_ACCEL_LIBS= ;export PE_PAPI_DEFAULT_ACCEL_LIBS;PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda ;export PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35;PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ ;export PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES;PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda ;export PE_PAPI_DEFAULT_TARGET_VAR_nvidia35;PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV;PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU;PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU;PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell;PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos;PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64;PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell;PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos;PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64;PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell;PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos;PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64;PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos;PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64;PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL ;export PE_PETSC_DEFAULT_REQUIRED_PRODUCTS;PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.6.3.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig ;export PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_PETSC_DEFAULT_VOLATILE_PRGENV;PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/PGI/15.3/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.0/PGI/15.3/lib/pkgconfig:/opt/cray/netcdf/4.4.0/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.16/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5/1.8.16/PGI/15.3/lib/pkgconfig:/opt/cray/ga/5.3.0.6/PGI/15.3/lib/pkgconfig ;export PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH;PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI_ACC:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW:PE_ACML ;export PE_PKGCONFIG_DEFAULT_PRODUCTS;PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime:mpich ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:PE_MPICH ;export PE_PKGCONFIG_PRODUCTS;PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI ;export PE_PKGCONFIG_PRODUCTS_DEFAULT;PE_PKG_CONFIG_PATH=/opt/cray/cti/1.0.4/lib/pkgconfig ;export PE_PKG_CONFIG_PATH;PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:GNU:GCC:CRAYPE:CRAYPE_INTERLAGOS ;export PE_PRODUCT_LIST;PE_SMA_DEFAULT_COMPFLAG= ;export PE_SMA_DEFAULT_COMPFLAG;PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer ;export PE_SMA_DEFAULT_COMPFLAG_GNU;PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 ;export PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64;PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 ;export PE_SMA_DEFAULT_DIR_PGI_DEFAULT64;PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ ;export PE_SMA_DEFAULT_PKGCONFIG_VARIABLES;PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.3.3/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig ;export PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_TPSL_64_DEFAULT_GENCOMPS_PGI_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_TPSL_64_DEFAULT_GENCOMPS_PGI_x86_64;PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS;PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/16.03.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_TPSL_64_DEFAULT_VOLATILE_PRGENV;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell;PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos;PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell;PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos;PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64;PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell;PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos;PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64;PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos;PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64;PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_TPSL_DEFAULT_REQUIRED_PRODUCTS;PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/16.03.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_TPSL_DEFAULT_VOLATILE_PRGENV;PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.4 ;export PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=84 ;export PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TRILINOSmodule swap gcc gcc/4.9.3 module load boost module load cmake/3.1.3 module load fftw # begin newpe testing module unload cce cray-mpich module load cce/8.5.5 module load cray-mpich/7.5.0 _DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64;PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64;PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL ;export PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS;PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/12.2.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU\ INTEL ;export PE_TRILINOS_DEFAULT_VOLATILE_PRGENV;PKGCONFIG_ENABLED=1 ;export PKGCONFIG_ENABLED;PKG_CONFIG_PATH=/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib/pkgconfig:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/pkgconfig:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64/pkgconfig:/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64/pkgconfig:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64/pkgconfig:/opt/cray/craype/2.5.4/pkg-config:/opt/cray/iobuf/2.0.6/lib/pkgconfig:/opt/cray/atp/2.0.1/lib/pkgconfig ;export PKG_CONFIG_PATH;PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.4.3.1/lib64/pkgconfig ;export PKG_CONFIG_PATH_DEFAULT;SHMEM_ABORT_ON_ERROR=1 ;export SHMEM_ABORT_ON_ERROR;XTOS_VERSION=5.2.82 ;export XTOS_VERSION;XTPE_NETWORK_TARGET=gemini ;export XTPE_NETWORK_TARGET;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-mpich/7.3.3:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82 ;export _LMFILES_;unset ASSEMBLER_X86_64;unset CC_X86_64;unset CRAYLIBS_X86_64;unset CRAYLMD_LICENSE_FILE;unset CRAY_BINUTILS_BIN;unset CRAY_BINUTILS_ROOT;unset CRAY_BINUTILS_VERSION;unset CRAY_CC_VERSION;unset CRAY_CXX_IPA_LIBS;unset CRAY_FTN_VERSION;unset CRAY_PE_TARGET;unset CRAY_PRGENVCRAY;unset FORTRAN_SYSTEM_MODULE_NAMES;unset FTN_X86_64;unset GCC_X86_64;unset INCLUDE_PATH_X86_64;unset LINKER_X86_64;unset NLSPATH;unset PE_LEVEL; ${MODULESHOME}/bin/modulecmd bash $* GCC_PATH=/opt/gcc/4.9.3 ;export GCC_PATH;GCC_VERSION=4.9.3 ;export GCC_VERSION;GNU_VERSION=4.9.3 ;export GNU_VERSION;INFOPATH=/opt/gcc/4.9.3/snos/share/info:/usr/local/info:/usr/share/info:/usr/info ;export INFOPATH;LD_LIBRARY_PATH=/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib:/usr/local/globus-5.2.5/lib64:/opt/torque/6.0.1-end/lib:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:cray-mpich/7.3.3:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82 ;export LOADEDMODULES;MANPATH=/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/mpt/7.3.3/gni/man/mpich:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/mpt/7.3.3/gni/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-mpich/7.3.3:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* BOOST_ROOT=/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2 ;export BOOST_ROOT;CRAY_BOOST_DIR=/sw/xe/boost/1.53.0 ;export CRAY_BOOST_DIR;CRAY_BOOST_INCLUDE_OPTS=-I/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/include ;export CRAY_BOOST_INCLUDE_OPTS;CRAY_BOOST_POST_LINK_OPTS=-L/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/lib ;export CRAY_BOOST_POST_LINK_OPTS;CRAY_BOOST_VERSION=1.53.0 ;export CRAY_BOOST_VERSION;LD_LIBRARY_PATH=/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/lib:/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib:/usr/local/globus-5.2.5/lib64:/opt/torque/6.0.1-end/lib:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:cray-mpich/7.3.3:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0 ;export LOADEDMODULES;PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:GNU:GCC:CRAYPE:CRAYPE_INTERLAGOS:CRAY_BOOST ;export PE_PRODUCT_LIST;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-mpich/7.3.3:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:cray-mpich/7.3.3:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3 ;export LOADEDMODULES;PATH=/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/mpt/7.3.3/gni/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-mpich/7.3.3:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* CRAY_FFTW_VERSION=3.3.4.7 ;export CRAY_FFTW_VERSION;CRAY_LD_LIBRARY_PATH=/opt/cray/fftw/3.3.4.7/interlagos/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib:/opt/cray/mpt/7.3.3/gni/mpich-gnu/4.9/lib ;export CRAY_LD_LIBRARY_PATH;FFTW_DIR=/opt/cray/fftw/3.3.4.7/interlagos/lib ;export FFTW_DIR;FFTW_INC=/opt/cray/fftw/3.3.4.7/interlagos/include ;export FFTW_INC;FFTW_VERSION=3.3.4.7 ;export FFTW_VERSION;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:cray-mpich/7.3.3:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:fftw/3.3.4.7 ;export LOADEDMODULES;MANPATH=/opt/cray/fftw/3.3.4.7/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/mpt/7.3.3/gni/man/mpich:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/fftw/3.3.4.7/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/mpt/7.3.3/gni/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_FFTW_REQUIRED_PRODUCTS=PE_MPICH ;export PE_FFTW_REQUIRED_PRODUCTS;PE_FFTW_TARGET_broadwell=broadwell ;export PE_FFTW_TARGET_broadwell;PE_FFTW_TARGET_haswell=haswell ;export PE_FFTW_TARGET_haswell;PE_FFTW_TARGET_interlagos=interlagos ;export PE_FFTW_TARGET_interlagos;PE_FFTW_TARGET_mic_knl=mic_knl ;export PE_FFTW_TARGET_mic_knl;PE_FFTW_TARGET_sandybridge=sandybridge ;export PE_FFTW_TARGET_sandybridge;PE_FFTW_TARGET_x86_64=x86_64 ;export PE_FFTW_TARGET_x86_64;PE_FFTW_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.4.7/@PE_FFTW_TARGET@/lib/pkgconfig ;export PE_FFTW_VOLATILE_PKGCONFIG_PATH;PE_PKGCONFIG_LIBS=fftw3f_mpi:fftw3f_threads:fftw3f:fftw3_mpi:fftw3_threads:fftw3:AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime:mpich ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_FFTW:PE_LIBSCI:PE_MPICH ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/cray/modulefiles/cray-mpich/7.3.3:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/cray/modulefiles/fftw/3.3.4.7 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* CRAY_LD_LIBRARY_PATH=/opt/cray/fftw/3.3.4.7/interlagos/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:fftw/3.3.4.7 ;export LOADEDMODULES;MANPATH=/opt/cray/fftw/3.3.4.7/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/fftw/3.3.4.7/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_PKGCONFIG_LIBS=fftw3f_mpi:fftw3f_threads:fftw3f:fftw3_mpi:fftw3_threads:fftw3:AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_FFTW:PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/cray/modulefiles/fftw/3.3.4.7 ;export _LMFILES_;unset CRAY_MPICH2_DIR;unset CRAY_MPICH2_VER;unset CRAY_MPICH_BASEDIR;unset CRAY_MPICH_DIR;unset CRAY_MPICH_ROOTDIR;unset MPICH_DIR;unset PE_CXX_PKGCONFIG_LIBS;unset PE_FORTRAN_PKGCONFIG_LIBS;unset PE_INTEL_FIXED_PKGCONFIG_PATH;unset PE_MPICH_CXX_PKGCONFIG_LIBS;unset PE_MPICH_DIR_CRAY_DEFAULT64;unset PE_MPICH_DIR_PGI_DEFAULT64;unset PE_MPICH_FIXED_PRGENV;unset PE_MPICH_FORTRAN_PKGCONFIG_LIBS;unset PE_MPICH_GENCOMPILERS_CRAY;unset PE_MPICH_GENCOMPILERS_GNU;unset PE_MPICH_GENCOMPILERS_PGI;unset PE_MPICH_GENCOMPS_CRAY;unset PE_MPICH_GENCOMPS_GNU;unset PE_MPICH_GENCOMPS_PGI;unset PE_MPICH_MODULE_NAME;unset PE_MPICH_MULTITHREADED_LIBS_multithreaded;unset PE_MPICH_NV_LIBS;unset PE_MPICH_NV_LIBS_nvidia20;unset PE_MPICH_NV_LIBS_nvidia35;unset PE_MPICH_PKGCONFIG_LIBS;unset PE_MPICH_PKGCONFIG_VARIABLES;unset PE_MPICH_TARGET_VAR_nvidia20;unset PE_MPICH_TARGET_VAR_nvidia35;unset PE_MPICH_VOLATILE_PKGCONFIG_PATH;unset PE_MPICH_VOLATILE_PRGENV; ${MODULESHOME}/bin/modulecmd bash $* ASSEMBLER_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/bin/aarch64-linux-gnu-as ;export ASSEMBLER_AARCH64;ASSEMBLER_X86_64=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/as ;export ASSEMBLER_X86_64;CC_X86_64=/opt/cray/cce/8.5.5/CC/x86-64 ;export CC_X86_64;CRAYLIBS_AARCH64=/opt/cray/cce/8.5.5/craylibs/aarch64 ;export CRAYLIBS_AARCH64;CRAYLIBS_X86_64=/opt/cray/cce/8.5.5/craylibs/x86-64 ;export CRAYLIBS_X86_64;CRAYLMD_LICENSE_FILE=/opt/cray/cce/cce.lic ;export CRAYLMD_LICENSE_FILE;CRAY_BINUTILS_BIN=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin ;export CRAY_BINUTILS_BIN;CRAY_BINUTILS_BIN_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/aarch64-unknowun-linux-gnu/bin ;export CRAY_BINUTILS_BIN_AARCH64;CRAY_BINUTILS_ROOT=/opt/cray/cce/8.5.5/cray-binutils ;export CRAY_BINUTILS_ROOT;CRAY_BINUTILS_ROOT_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils ;export CRAY_BINUTILS_ROOT_AARCH64;CRAY_BINUTILS_VERSION=/opt/cray/cce/8.5.5 ;export CRAY_BINUTILS_VERSION;CRAY_CC_VERSION=8.5.5 ;export CRAY_CC_VERSION;CRAY_CXX_IPA_LIBS=/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64/libcray-c++-rts.a ;export CRAY_CXX_IPA_LIBS;CRAY_CXX_IPA_LIBS_AARCH64=/opt/cray/cce/8.5.5/CC/x86-64/lib/aarch64/libcray-c++-rts.a ;export CRAY_CXX_IPA_LIBS_AARCH64;CRAY_FTN_VERSION=8.5.5 ;export CRAY_FTN_VERSION;CRAY_LD_LIBRARY_PATH=/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/fftw/3.3.4.7/interlagos/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;FORTRAN_SYSTEM_MODULE_NAMES=ftn_lib_definitions ;export FORTRAN_SYSTEM_MODULE_NAMES;FTN_X86_64=/opt/cray/cce/8.5.5/cftn/x86-64 ;export FTN_X86_64;GCC_AARCH64=/opt/gcc-cross-aarch64/4.8.1/aarch64 ;export GCC_AARCH64;GCC_X86_64=/opt/gcc/4.8.1/snos ;export GCC_X86_64;INCLUDE_PATH_AARCH64=/opt/cray/cce/8.5.5/craylibs/aarch64/include ;export INCLUDE_PATH_AARCH64;INCLUDE_PATH_X86_64=/opt/cray/cce/8.5.5/craylibs/x86-64/include ;export INCLUDE_PATH_X86_64;LINKER_AARCH64=/opt/cray/cce/8.5.5/aarch64-binutils/bin/aarch64-linux-gnu-ld ;export LINKER_AARCH64;LINKER_X86_64=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld ;export LINKER_X86_64;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:fftw/3.3.4.7:cce/8.5.5 ;export LOADEDMODULES;MANPATH=/opt/cray/cce/8.5.5/man:/opt/cray/fftw/3.3.4.7/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;NLSPATH=/opt/cray/cce/8.5.5/CC/x86-64/nls/En/%N.cat:/opt/cray/cce/8.5.5/craylibs/x86-64/nls/En/%N.cat:/opt/cray/cce/8.5.5/cftn/x86-64/nls/En/%N.cat ;export NLSPATH;PATH=/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/opt/cray/fftw/3.3.4.7/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_LEVEL=8.5 ;export PE_LEVEL;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/cray/modulefiles/fftw/3.3.4.7:/opt/modulefiles/cce/8.5.5 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* CRAY_LD_LIBRARY_PATH=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib:/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/fftw/3.3.4.7/interlagos/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;CRAY_MPICH2_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export CRAY_MPICH2_DIR;CRAY_MPICH2_VER=7.5.0 ;export CRAY_MPICH2_VER;CRAY_MPICH_BASEDIR=/opt/cray/mpt/7.5.0/gni ;export CRAY_MPICH_BASEDIR;CRAY_MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export CRAY_MPICH_DIR;CRAY_MPICH_ROOTDIR=/opt/cray/mpt/7.5.0 ;export CRAY_MPICH_ROOTDIR;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmamodule unload fftw module load fftw/3.3.4.10 # end newpe testing export CRAYPE_LINK_TYPE=dynamic export CRAY_ADD_RPATH=yes # install openbabel library cd $INSTDIR bash: line 28: cd: /var/lib/jenkins/rmg-spp: No such file or directory wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz --2017-02-15 10:14:45-- http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz Resolving downloads.sourceforge.net... 216.34.181.59 Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected. HTTP request sent, awaiting response... 302 Found Location: https://superb-sea2.dl.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz [following] --2017-02-15 10:14:45-- https://superb-sea2.dl.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz Resolving superb-sea2.dl.sourceforge.net... 209.160.57.180 Connecting to superb-sea2.dl.sourceforge.net|209.160.57.180|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 20509105 (20M) [application/x-gzip] Saving to: `openbabel-2.3.2.tar.gz' 0K .......... .......... .......... .......... .......... 0% 807K 25s 50K .......... .......... .......... .......... .......... 0% 544K 31s 100K .......... .......... .......... .......... .......... 0% 1.08M 26s 150K .......... .......... .......... .......... .......... 0% 1.08M 24s 200K .......... .......... .......... .......... .......... 1% 1.07M 23s 250K .......... .......... .......... .......... .......... 1% 1.10M 22s 300K .......... .......... .......... .......... .......... 1% 31.1M 19s 350K .......... .......... .......... .......... .......... 1% 1.10M 19s 400K .......... .......... .......... .......... .......... 2% 1.27M 18s 450K .......... .......... .......... .......... .......... 2% 7.30M 17s 500K .......... .......... .......... .......... .......... 2% 26.6M 15s 550K .......... .......... .......... .......... .......... 2% 1.13M 15s 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LOADEDMODULES;MANPATH=/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/cce/8.5.5/man:/opt/cray/fftw/3.3.4.7/share/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export MPICH_DIR;PATH=/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/opt/cray/fftw/3.3.4.7/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_CXX_PKGCONFIG_LIBS;PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_FORTRAN_PKGCONFIG_LIBS;PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/mpich-intel/16.0/lib/pkgconfig ;export PE_INTEL_FIXED_PKGCONFIG_PATH;PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_MPICH_CXX_PKGCONFIG_LIBS;PE_MPICH_DIR_CRAY_DEFAULT64=64 ;export PE_MPICH_DIR_CRAY_DEFAULT64;PE_MPICH_DIR_PGI_DEFAULT64=64 ;export PE_MPICH_DIR_PGI_DEFAULT64;PE_MPICH_FIXED_PRGENV=INTEL ;export PE_MPICH_FIXED_PRGENV;PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_MPICH_FORTRAN_PKGCONFIG_LIBS;PE_MPICH_GENCOMPILERS_CRAY=8.4 ;export PE_MPICH_GENCOMPILERS_CRAY;PE_MPICH_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_MPICH_GENCOMPILERS_GNU;PE_MPICH_GENCOMPILERS_PGI=15.3 ;export PE_MPICH_GENCOMPILERS_PGI;PE_MPICH_GENCOMPS_CRAY=84 ;export PE_MPICH_GENCOMPS_CRAY;PE_MPICH_GENCOMPS_GNU=51\ 49 ;export PE_MPICH_GENCOMPS_GNU;PE_MPICH_GENCOMPS_PGI=153 ;export PE_MPICH_GENCOMPS_PGI;PE_MPICH_MODULE_NAME=cray-mpich ;export PE_MPICH_MODULE_NAME;PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt ;export PE_MPICH_MULTITHREADED_LIBS_multithreaded;PE_MPICH_NV_LIBS= ;export PE_MPICH_NV_LIBS;PE_MPICH_NV_LIBS_nvidia20=-lcudart ;export PE_MPICH_NV_LIBS_nvidia20;PE_MPICH_NV_LIBS_nvidia35=-lcudart ;export PE_MPICH_NV_LIBS_nvidia35;PE_MPICH_PKGCONFIG_LIBS=mpich ;export PE_MPICH_PKGCONFIG_LIBS;PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ ;export PE_MPICH_PKGCONFIG_VARIABLES;PE_MPICH_TARGET_VAR_nvidia20=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia20;PE_MPICH_TARGET_VAR_nvidia35=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia35;PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig ;export PE_MPICH_VOLATILE_PKGCONFIG_PATH;PE_MPICH_VOLATILE_PRGENV=CRAY\ GNU\ PGI ;export PE_MPICH_VOLATILE_PRGENV;PE_PKGCONFIG_LIBS=mpich:fftw3f_mpi:fftw3f_threads:fftw3f:fftw3_mpi:fftw3_threads:fftw3:AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_MPICH:PE_FFTW:PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/cray/modulefiles/fftw/3.3.4.7:/opt/modulefiles/cce/8.5.5:/opt/cray/modulefiles/cray-mpich/7.5.0 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* CRAY_LD_LIBRARY_PATH=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib:/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:cce/8.5.5:cray-mpich/7.5.0 ;export LOADEDMODULES;MANPATH=/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/cce/8.5.5/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_PKGCONFIG_LIBS=mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/modulefiles/cce/8.5.5:/opt/cray/modulefiles/cray-mpich/7.5.0 ;export _LMFILES_;unset CRAY_FFTW_VERSION;unset FFTW_DIR;unset FFTW_INC;unset FFTW_VERSION;unset PE_FFTW_REQUIRED_PRODUCTS;unset PE_FFTW_TARGET_broadwell;unset PE_FFTW_TARGET_haswell;unset PE_FFTW_TARGET_interlagos;unset PE_FFTW_TARGET_mic_knl;unset PE_FFTW_TARGET_sandybridge;unset PE_FFTW_TARGET_x86_64;unset PE_FFTW_VOLATILE_PKGCONFIG_PATH; ${MODULESHOME}/bin/modulecmd bash $* CRAY_FFTW_VERSION=3.3.4.10 ;export CRAY_FFTW_VERSION;CRAY_LD_LIBRARY_PATH=/opt/cray/fftw/3.3.4.10/interlagos/lib:/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib:/opt/cray/cce/8.5.5/CC/x86-64/lib/x86-64:/opt/cray/cce/8.5.5/craylibs/x86-64:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib ;export CRAY_LD_LIBRARY_PATH;FFTW_DIR=/opt/cray/fftw/3.3.4.10/interlagos/lib ;export FFTW_DIR;FFTW_INC=/opt/cray/fftw/3.3.4.10/interlagos/include ;export FFTW_INC;FFTW_VERSION=3.3.4.10 ;export FFTW_VERSION;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1278.0:gcc/4.9.3:craype-interlagos:craype-network-gemini:craype/2.5.4:torque/6.0.1:moab/9.0.2.TAS3-1481649105_51955bd-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:darshan/2.3.0.1:scripts:user-paths:xalt/0.7.6:cray-libsci/16.03.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.1:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:cce/8.5.5:cray-mpich/7.5.0:fftw/3.3.4.10 ;export LOADEDMODULES;MANPATH=/opt/cray/fftw/3.3.4.10/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/cce/8.5.5/man:/opt/cray/atp/2.0.1/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.03.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t3/share/man/:/opt/torque/6.0.1-end/share/man:/opt/cray/craype/2.5.4/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t3/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/fftw/3.3.4.10/interlagos/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_FFTW_OMP_REQUIRES=\ ;export PE_FFTW_OMP_REQUIRES;PE_FFTW_OMP_REQUIRES_openmp=_mp ;export PE_FFTW_OMP_REQUIRES_openmp;PE_FFTW_PKGCONFIG_LIBS=fftw3f_mpi:libfftw3f_threads:fftw3f:fftw3_mpi:libfftw3_threads:fftw3 ;export PE_FFTW_PKGCONFIG_LIBS;PE_FFTW_PKGCONFIG_VARIABLES=PE_FFTW_OMP_REQUIRES_@openmp@ ;export PE_FFTW_PKGCONFIG_VARIABLES;PE_FFTW_REQUIRED_PRODUCTS=PE_MPICH ;export PE_FFTW_REQUIRED_PRODUCTS;PE_FFTW_TARGET_abudhabi=abudhabi ;export PE_FFTW_TARGET_abudhabi;PE_FFTW_TARGET_broadwell=broadwell ;export PE_FFTW_TARGET_broadwell;PE_FFTW_TARGET_haswell=haswell ;export PE_FFTW_TARGET_haswell;PE_FFTW_TARGET_interlagos=interlagos ;export PE_FFTW_TARGET_interlagos;PE_FFTW_TARGET_ivybridge=ivybridge ;export PE_FFTW_TARGET_ivybridge;PE_FFTW_TARGET_mic_knl=mic_knl ;export PE_FFTW_TARGET_mic_knl;PE_FFTW_TARGET_sandybridge=sandybridge ;export PE_FFTW_TARGET_sandybridge;PE_FFTW_TARGET_share=share ;export PE_FFTW_TARGET_share;PE_FFTW_TARGET_x86_64=x86_64 ;export PE_FFTW_TARGET_x86_64;PE_FFTW_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.4.10/@PE_FFTW_TARGET@/lib/pkgconfig ;export PE_FFTW_VOLATILE_PKGCONFIG_PATH;PE_PKGCONFIG_PRODUCTS=PE_FFTW:PE_MPICH:PE_LIBSCI ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1278.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.4/modulefiles/craype-interlagos:/opt/cray/craype/2.5.4/modulefiles/craype-network-gemini:/opt/cray/modulefiles/craype/2.5.4:/opt/modulefiles/torque/6.0.1:/opt/modulefiles/moab/9.0.2.TAS3-1481649105_51955bd-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/sw/xe/modulefiles/darshan/2.3.0.1:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/bw/modulefiles/xalt/0.7.6:/opt/cray/modulefiles/cray-libsci/16.03.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.1:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/modulefiles/cce/8.5.5:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/cray/modulefiles/fftw/3.3.4.10 ;export _LMFILES_; ....... .......... .......... .......... 32% 1.48M 3s 6500K .......... .......... .......... .......... .......... 32% 77.8M 3s 6550K .......... .......... .......... .......... .......... 32% 77.1M 3s 6600K .......... .......... .......... .......... .......... 33% 78.2M 3s 6650K .......... .......... .......... .......... .......... 33% 6.25M 3s 6700K .......... .......... .......... .......... .......... 33% 19.9M 3s 6750K .......... .......... .......... .......... .......... 33% 1.50M 3s 6800K .......... .......... .......... .......... .......... 34% 74.4M 3s 6850K .......... .......... .......... .......... .......... 34% 76.3M 3s 6900K .......... .......... .......... .......... .......... 34% 74.8M 3s 6950K .......... .......... .......... .......... .......... 34% 62.1M 3s 7000K .......... .......... .......... .......... .......... 35% 5.81M 3s 7050K .......... .......... .......... .......... .......... 35% 16.7M 3s 7100K .......... .......... .......... .......... .......... 35% 1.57M 3s 7150K .......... .......... .......... .......... .......... 35% 38.0M 3s 7200K .......... .......... .......... .......... .......... 36% 61.8M 3s 7250K .......... .......... .......... .......... .......... 36% 60.0M 3s 7300K .......... .......... .......... .......... .......... 36% 5.78M 3s 7350K .......... .......... .......... .......... .......... 36% 27.9M 3s 7400K .......... .......... .......... .......... .......... 37% 1.55M 3s 7450K .......... .......... .......... .......... .......... 37% 33.2M 3s 7500K .......... .......... .......... .......... .......... 37% 57.8M 3s 7550K .......... .......... .......... .......... .......... 37% 39.2M 3s 7600K .......... .......... .......... .......... .......... 38% 5.96M 3s 7650K .......... .......... .......... .......... .......... 38% 21.3M 3s 7700K .......... .......... .......... .......... .......... 38% 1.61M 3s 7750K .......... .......... .......... .......... .......... 38% 35.6M 3s 7800K .......... .......... .......... .......... .......... 39% 24.4M 3s 7850K .......... .......... .......... .......... .......... 39% 66.2M 3s 7900K .......... .......... .......... .......... .......... 39% 47.2M 3s 7950K .......... .......... .......... .......... .......... 39% 6.41M 3s 8000K .......... .......... .......... .......... .......... 40% 18.8M 3s 8050K .......... .......... .......... .......... .......... 40% 1.62M 3s 8100K .......... .......... .......... .......... .......... 40% 15.8M 3s 8150K .......... .......... .......... .......... .......... 40% 44.0M 2s 8200K .......... .......... .......... .......... .......... 41% 2.28M 2s 8250K .......... .......... .......... .......... .......... 41% 84.8M 2s 8300K .......... .......... .......... .......... .......... 41% 83.6M 2s 8350K .......... .......... .......... .......... .......... 41% 2.72M 2s 8400K .......... .......... .......... .......... .......... 42% 17.5M 2s 8450K .......... .......... .......... .......... .......... 42% 49.9M 2s 8500K .......... .......... .......... .......... .......... 42% 2.24M 2s 8550K .......... .......... .......... .......... .......... 42% 77.6M 2s 8600K .......... .......... .......... .......... .......... 43% 75.3M 2s 8650K .......... .......... .......... .......... .......... 43% 87.2M 2s 8700K .......... .......... .......... .......... .......... 43% 2.77M 2s 8750K .......... .......... .......... .......... .......... 43% 15.1M 2s 8800K .......... .......... .......... .......... .......... 44% 2.72M 2s 8850K .......... .......... .......... .......... .......... 44% 11.0M 2s 8900K .......... .......... .......... .......... .......... 44% 56.8M 2s 8950K .......... .......... .......... .......... .......... 44% 48.6M 2s 9000K .......... .......... .......... .......... .......... 45% 5.22M 2s 9050K .......... .......... .......... .......... .......... 45% 5.49M 2s 9100K .......... .......... .......... .......... .......... 45% 17.8M 2s 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openbabel-2.3.2/data/space-groups.txt openbabel-2.3.2/data/space-groups.xsl openbabel-2.3.2/data/splash.png openbabel-2.3.2/data/superatom.txt openbabel-2.3.2/data/svgformat.script openbabel-2.3.2/data/templates.sdf openbabel-2.3.2/data/torlib.h openbabel-2.3.2/data/torlib.txt openbabel-2.3.2/data/types.h openbabel-2.3.2/data/types.txt openbabel-2.3.2/data/UFF.prm openbabel-2.3.2/cmake/modules/ openbabel-2.3.2/cmake/modules/FindCairo.cmake openbabel-2.3.2/cmake/modules/FindEigen2.cmake openbabel-2.3.2/cmake/modules/FindEigen3.cmake openbabel-2.3.2/cmake/modules/FindInchi.cmake openbabel-2.3.2/cmake/modules/MacroEnsureVersion.cmake openbabel-2.3.2/cmake/modules/UsePythonTest.cmake -- The C compiler identification is GNU 4.9.3 -- The CXX compiler identification is GNU 4.9.3 -- Check for working C compiler: /opt/cray/craype/2.5.4/bin/cc -- Check for working C compiler: /opt/cray/craype/2.5.4/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /opt/cray/craype/2.5.4/bin/CC -- Check for working CXX compiler: /opt/cray/craype/2.5.4/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.7.6") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- checking for module 'cairo' -- found cairo, version 1.8.8 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets not found => GUI will not be built CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python (found version "2.6.9") -- Configuring done nice make -j8 -- Generating done -- Build files have been written to: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build Scanning dependencies of target inchi [ 0%] [ 1%] [ 1%] [ 1%] [ 2%] [ 2%] [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o [ 3%] Building C object 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src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o Linking CXX shared module ../lib/plugin_descriptors.so [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o [ 41%] Built target plugin_charges [ 41%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o [ 41%] Built target plugin_descriptors [ 42%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o Scanning dependencies of target acesformat [ 43%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o Linking CXX shared module ../../lib/PQSformat.so Linking CXX shared module ../../lib/abinitformat.so [ 43%] Built target PQSformat [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o [ 43%] Built target abinitformat [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o Scanning dependencies of target acrformat [ 43%] Building CXX object 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asciiformat [ 46%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o Linking CXX shared module ../../lib/adfformat.so Scanning dependencies of target balstformat [ 46%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.o [ 46%] Built target adfformat [ 47%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o [ 47%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o Linking CXX shared module ../../lib/amberformat.so Linking CXX shared module ../../lib/alchemyformat.so [ 47%] Built target amberformat [ 47%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o [ 47%] Built target alchemyformat [ 48%] [ 48%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o Scanning dependencies of target bgfformat Linking CXX shared module ../../lib/asciiformat.so [ 49%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.o Linking CXX shared module ../../lib/balstformat.so [ 49%] Built target asciiformat Scanning dependencies of target boxformat [ 49%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o [ 49%] Built target balstformat Linking CXX shared module ../../lib/bgfformat.so Scanning dependencies of target castepformat Scanning dependencies of target cacheformat Scanning dependencies of target carformat [ 49%] [ 50%] [ 50%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o Scanning dependencies of target cacaoformat [ 50%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o [ 50%] Built target bgfformat Scanning dependencies of target cccformat [ 50%] Linking CXX shared module ../lib/plugin_forcefields.so Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o Linking CXX shared module ../lib/plugin_ops.so Linking CXX shared module ../../lib/cacheformat.so Linking CXX shared module ../../lib/boxformat.so Linking CXX shared module ../../lib/carformat.so [ 50%] Built target cacheformat Linking CXX shared module ../../lib/cccformat.so Linking CXX shared module ../../lib/cacaoformat.so Linking CXX shared module ../../lib/castepformat.so [ 50%] [ 50%] Built target plugin_forcefields Built target boxformat [ 50%] Built target carformat Scanning dependencies of target chem3dformat [ 50%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o Scanning dependencies of target chemdrawcdx [ 51%] Scanning dependencies of target chemdrawct Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o [ 51%] [ 51%] Built target cccformat Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o [ 51%] Built target castepformat Scanning dependencies of target chemkinformat [ 51%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o Scanning dependencies of target cdxmlformat [ 52%] [ 52%] Built target cacaoformat Scanning dependencies of target chemtoolformat [ 52%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o [ 53%] [ 53%] Built target plugin_ops Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o Scanning dependencies of target cifformat [ 53%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o Linking CXX shared module ../../lib/chem3dformat.so Linking CXX shared module ../../lib/chemdrawct.so Linking CXX shared module ../../lib/chemtoolformat.so Linking CXX shared module ../../lib/cdxmlformat.so [ 53%] [ 53%] [ 53%] Built target chem3dformat Built target chemdrawct Built target chemtoolformat Scanning dependencies of target copyformat [ 54%] Scanning dependencies of target crkformat Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o [ 54%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o Scanning dependencies of target cmlreactformat [ 54%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o Linking CXX shared module ../../lib/chemdrawcdx.so Scanning dependencies of target cmlformat [ 54%] [ 54%] Built target cdxmlformat Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o [ 55%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o Linking CXX shared module ../../lib/copyformat.so Linking CXX shared module ../../lib/chemkinformat.so [ 55%] Built target chemdrawcdx [ 55%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o [ 55%] Built target copyformat Linking CXX shared module ../../lib/cifformat.so Scanning dependencies of target crystal09format [ 55%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o [ 55%] Built target chemkinformat Scanning dependencies of target cssrformat [ 56%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o [ 56%] Built target cifformat Linking CXX shared module ../../lib/crkformat.so Scanning dependencies of target dlpolyformat Scanning dependencies of target dmolformat [ 56%] [ 56%] Scanning dependencies of target fastaformat Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o [ 56%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o Linking CXX shared module ../../lib/cssrformat.so [ 56%] Built target crkformat Scanning dependencies of target fastsearchformat [ 57%] Built target cssrformat [ 57%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o Linking CXX shared module ../../lib/crystal09format.so Scanning dependencies of target fchkformat [ 57%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o Linking CXX shared module ../../lib/cmlreactformat.so [ 57%] Built target crystal09format Scanning dependencies of target featformat [ 57%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o [ 57%] Built target cmlreactformat Scanning dependencies of target fhformat [ 58%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o Linking CXX shared module ../../lib/dmolformat.so [ 58%] Linking CXX shared module ../../lib/fastaformat.so Built target dmolformat Scanning dependencies of target fhiaimsformat [ 58%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o [ 58%] Built target fastaformat Scanning dependencies of target fingerprintformat [ 58%] Linking CXX shared module ../../lib/featformat.so Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o [ 58%] Built target featformat Linking CXX shared module ../../lib/fhformat.so Scanning dependencies of target fpsformat [ 59%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o [ 59%] Built target fhformat Scanning dependencies of target freefracformat [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o Linking CXX shared module ../../lib/cmlformat.so Linking CXX shared module ../../lib/dlpolyformat.so Linking CXX shared module ../../lib/fastsearchformat.so Linking CXX shared module ../../lib/fhiaimsformat.so [ 59%] Built target dlpolyformat Scanning dependencies of target gamessformat Linking CXX shared module ../../lib/fchkformat.so Linking CXX shared module ../../lib/fingerprintformat.so Linking CXX shared module ../../lib/fpsformat.so [ 59%] [ 59%] [ 59%] [ 59%] Built target fhiaimsformat Built target cmlformat Built target fastsearchformat Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o Linking CXX shared module ../../lib/freefracformat.so Scanning dependencies of target gaussformat [ 59%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o Scanning dependencies of target gamessukformat Scanning dependencies of target gausscubeformat [ 60%] [ 60%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o [ 60%] Built target fingerprintformat [ 60%] Built target fchkformat [ 60%] Built target fpsformat [ 60%] Built target freefracformat Scanning dependencies of target gausszmatformat Scanning dependencies of target ghemicalformat [ 61%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o Scanning dependencies of target groformat Scanning dependencies of target gromos96format [ 61%] [ 62%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o [ 62%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o Linking CXX shared module ../../lib/gromos96format.so Linking CXX shared module ../../lib/ghemicalformat.so Linking CXX shared module ../../lib/gausszmatformat.so Linking CXX shared module ../../lib/groformat.so [ 62%] [ 62%] Built target ghemicalformat Built target gromos96format [ 62%] Built target gausszmatformat Scanning dependencies of target gulpformat [ 62%] Scanning dependencies of target hinformat Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o [ 62%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o Scanning dependencies of target inchiformat [ 62%] [ 62%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o Built target groformat [ 62%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o Scanning dependencies of target jaguarformat [ 62%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o Linking CXX shared module ../../lib/gausscubeformat.so [ 62%] Built target gausscubeformat [ 63%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o Linking CXX shared module ../../lib/hinformat.so [ 63%] Built target hinformat Linking CXX shared module ../../lib/gamessformat.so Scanning dependencies of target lmpdatformat [ 63%] Linking CXX shared module ../../lib/gamessukformat.so Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o Linking CXX shared module ../../lib/gulpformat.so Linking CXX shared module ../../lib/gaussformat.so [ 63%] Built target gulpformat [ 63%] Built target gamessformat [ 63%] Built target gamessukformat Scanning dependencies of target mmcifformat [ 63%] Scanning dependencies of target mdlformat Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o [ 64%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o [ 64%] Linking CXX shared module ../../lib/jaguarformat.so Built target gaussformat Scanning dependencies of target mmodformat [ 64%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o Scanning dependencies of target mol2format [ 65%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o [ 65%] Built target jaguarformat Scanning dependencies of target moldenformat [ 65%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o Scanning dependencies of target molproformat [ 65%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o Linking CXX shared module ../../lib/inchiformat.so Linking CXX shared module ../../lib/mmodformat.so [ 65%] Built target mmodformat Linking CXX shared module ../../lib/mol2format.so Scanning dependencies of target molreport Linking CXX shared module ../../lib/lmpdatformat.so [ 66%] [ 66%] Built target inchiformat Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o Scanning dependencies of target mopacformat [ 66%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o [ 66%] Built target mol2format [ 66%] Built target lmpdatformat Scanning dependencies of target mpdformat [ 66%] Scanning dependencies of target mpqcformat Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o [ 67%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o Linking CXX shared module ../../lib/moldenformat.so Linking CXX shared module ../../lib/mmcifformat.so Linking CXX shared module ../../lib/molproformat.so [ 67%] Built target moldenformat Scanning dependencies of target msiformat [ 67%] [ 67%] Built target mmcifformat Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o [ 67%] Built target molproformat Scanning dependencies of target msmsformat [ 67%] Scanning dependencies of target nulformat Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o [ 68%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o Linking CXX shared module ../../lib/molreport.so Linking CXX shared module ../../lib/nulformat.so [ 68%] Built target molreport Scanning dependencies of target nwchemformat [ 68%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o Linking CXX shared module ../../lib/mpqcformat.so [ 68%] Built target nulformat Linking CXX shared module ../../lib/mpdformat.so Scanning dependencies of target opendxformat [ 68%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o [ 68%] Built target mpdformat [ 68%] Built target mpqcformat Scanning dependencies of target outformat [ 69%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o Linking CXX shared module ../../lib/msmsformat.so Scanning dependencies of target pcmodelformat [ 69%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o Linking CXX shared module ../../lib/msiformat.so [ 69%] Built target msmsformat Scanning dependencies of target pdbformat [ 69%] Built target msiformat [ 69%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o Scanning dependencies of target pdbqtformat [ 69%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o Linking CXX shared module ../../lib/mdlformat.so Linking CXX shared module ../../lib/outformat.so [ 69%] Built target mdlformat Linking CXX shared module ../../lib/mopacformat.so Linking CXX shared module ../../lib/pcmodelformat.so Scanning dependencies of target png2format [ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.o Linking CXX shared module ../../lib/opendxformat.so [ 69%] Built target outformat [ 70%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o [ 70%] Built target mopacformat Linking CXX shared module ../../lib/nwchemformat.so [ 70%] Built target pcmodelformat Scanning dependencies of target pngformat [ 70%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o Scanning dependencies of target posformat [ 70%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o [ 70%] Built target opendxformat [ 70%] Built target nwchemformat Scanning dependencies of target povrayformat [ 71%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o Scanning dependencies of target pqrformat [ 71%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o Scanning dependencies of target pubchem [ 71%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o Linking CXX shared module ../../lib/png2format.so Linking CXX shared module ../../lib/posformat.so Linking CXX shared module ../../lib/pngformat.so [ 71%] [ 71%] Built target pngformat [ 71%] Built target posformat [ 71%] Built target png2format Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o Scanning dependencies of target qchemformat Scanning dependencies of target pwscfformat [ 71%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o [ 72%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o Linking CXX shared module ../../lib/pdbformat.so Scanning dependencies of target reportformat [ 72%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o [ 72%] Built target pdbformat Linking CXX shared module ../../lib/povrayformat.so Linking CXX shared module ../../lib/pqrformat.so Linking CXX shared module ../../lib/pdbqtformat.so Scanning dependencies of target rsmiformat [ 72%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o Linking CXX shared module ../../lib/pwscfformat.so Linking CXX shared module ../../lib/reportformat.so Linking CXX shared module ../../lib/pubchem.so Linking CXX shared module ../../lib/qchemformat.so [ 72%] Built target povrayformat [ 72%] Built target reportformat [ 72%] [ 72%] Built target pwscfformat Built target qchemformat [ 72%] Built target pubchem Scanning dependencies of target rxnformat [ 72%] [ 72%] Built target pdbqtformat Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o [ 72%] Built target pqrformat Scanning dependencies of target textformat Scanning dependencies of target shelxformat Scanning dependencies of target svgformat [ 74%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o [ 74%] [ 74%] Scanning dependencies of target thermoformat Scanning dependencies of target tinkerformat Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o [ 74%] [ 74%] Scanning dependencies of target smilesformat Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o [ 74%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o Linking CXX shared module ../../lib/textformat.so [ 74%] Built target textformat Linking CXX shared module ../../lib/shelxformat.so Linking CXX shared module ../../lib/tinkerformat.so Linking CXX shared module ../../lib/thermoformat.so Linking CXX shared module ../../lib/rxnformat.so Linking CXX shared module ../../lib/svgformat.so Linking CXX shared module ../../lib/rsmiformat.so Scanning dependencies of target titleformat [ 75%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o [ 75%] [ 75%] Built target rxnformat Built target tinkerformat [ 75%] Built target rsmiformat [ 75%] Built target shelxformat [ 75%] [ 75%] Built target svgformat Built target thermoformat Scanning dependencies of target turbomoleformat Scanning dependencies of target unichemformat [ 75%] [ 75%] Scanning dependencies of target viewmolformat Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o Scanning dependencies of target vaspformat [ 75%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o Scanning dependencies of target xedformat [ 76%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o [ 76%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o Scanning dependencies of target xmlformat [ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o Linking CXX shared module ../../lib/titleformat.so [ 77%] Built target titleformat [ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o Linking CXX shared module ../../lib/turbomoleformat.so Linking CXX shared module ../../lib/xedformat.so Linking CXX shared module ../../lib/unichemformat.so Linking CXX shared module ../../lib/viewmolformat.so Scanning dependencies of target xsfformat [ 77%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o [ 77%] Built target turbomoleformat [ 77%] Built target xedformat [ 77%] Built target viewmolformat Scanning dependencies of target xtcformat Scanning dependencies of target xyzformat [ 78%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o [ 78%] Built target unichemformat [ 78%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.o Scanning dependencies of target yasaraformat [ 78%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o Scanning dependencies of target zindoformat [ 79%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o Linking CXX shared module ../../lib/smilesformat.so Linking CXX shared module ../../lib/xmlformat.so [ 79%] Built target smilesformat Scanning dependencies of target babel [ 79%] Building CXX object tools/CMakeFiles/babel.dir/babel.o Linking CXX shared module ../../lib/xsfformat.so [ 79%] Linking CXX shared module ../../lib/zindoformat.so Built target xmlformat Scanning dependencies of target obabel Linking CXX shared module ../../lib/yasaraformat.so [ 79%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o [ 79%] Built target xsfformat [ 79%] Built target zindoformat Scanning dependencies of target obchiral [ 79%] [ 79%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o Built target yasaraformat Scanning dependencies of target obconformer Linking CXX shared module ../../lib/vaspformat.so [ 80%] Scanning dependencies of target obenergy Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o [ 80%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.o Linking CXX shared module ../../lib/xyzformat.so Linking CXX shared module ../../lib/xtcformat.so [ 80%] Built target vaspformat [ 80%] Built target xyzformat Scanning dependencies of target obfit [ 80%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.o Linking CXX executable ../bin/babel [ 80%] Scanning dependencies of target obgen Built target xtcformat [ 81%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o Linking CXX executable ../bin/obabel Scanning dependencies of target obgrep [ 81%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o [ 81%] Built target babel Scanning dependencies of target obminimize [ 81%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.o [ 81%] Built target obabel Scanning dependencies of target obprobe [ 82%] Linking CXX executable ../bin/obchiral Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o Linking CXX executable ../bin/obconformer Linking CXX executable ../bin/obenergy [ 82%] Built target obchiral [ 82%] Built target obconformer [ 82%] Built target obenergy Scanning dependencies of target obprop [ 82%] Scanning dependencies of target obrotamer Building CXX object tools/CMakeFiles/obprop.dir/obprop.o [ 82%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.o Scanning dependencies of target obrotate [ 83%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o Linking CXX executable ../bin/obgen Linking CXX executable ../bin/obfit Linking CXX executable ../bin/obminimize Linking CXX executable ../bin/obgrep [ 83%] [ 83%] Built target obfit Built target obgen Linking CXX executable ../bin/obprobe Scanning dependencies of target roundtrip Scanning dependencies of target obspectrophore [ 84%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o [ 84%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o [ 84%] Built target obminimize [ 84%] Built target obgrep Scanning dependencies of target test_aromatest [ 84%] Built target obprobe Scanning dependencies of target test_atom [ 85%] Building CXX object test/CMakeFiles/test_atom.dir/atom.o [ 85%] Building CXX object test/CMakeFiles/test_aromatest.dir/aromatest.o Scanning dependencies of target test_automorphism Linking CXX executable ../bin/obrotamer [ 85%] Building CXX object test/CMakeFiles/test_automorphism.dir/automorphismtest.o Linking CXX executable ../bin/obrotate Linking CXX executable ../bin/obprop [ 85%] Built target obrotamer Linking CXX executable ../bin/roundtrip Linking CXX executable ../bin/test_aromatest Linking CXX executable ../bin/test_atom Linking CXX executable ../bin/test_automorphism Linking CXX executable ../bin/obspectrophore [ 85%] Built target obrotate Scanning dependencies of target test_bond Scanning dependencies of target test_builder [ 86%] Building CXX object test/CMakeFiles/test_builder.dir/buildertest.o [ 86%] Building CXX object test/CMakeFiles/test_bond.dir/bond.o [ 86%] Built target obprop [ 86%] Built target test_automorphism [ 86%] [ 86%] Built target obspectrophore Built target test_atom Scanning dependencies of target test_canonconsistent [ 86%] [ 86%] [ 86%] Built target roundtrip Built target test_aromatest Building CXX object test/CMakeFiles/test_canonconsistent.dir/canonconsistenttest.o Scanning dependencies of target test_cansmi Scanning dependencies of target test_charge-gasteiger Scanning dependencies of target test_canonstable [ 86%] [ 86%] [ 87%] Building CXX object test/CMakeFiles/test_cansmi.dir/cansmi.o Building CXX object test/CMakeFiles/test_charge-gasteiger.dir/charge-gasteiger.o Building CXX object test/CMakeFiles/test_canonstable.dir/canonstabletest.o Scanning dependencies of target test_charge-mmff94 [ 87%] Scanning dependencies of target test_cistrans Building CXX object test/CMakeFiles/test_charge-mmff94.dir/charge-mmff94.o [ 88%] Building CXX object test/CMakeFiles/test_cistrans.dir/cistranstest.o Linking CXX executable ../bin/test_builder Linking CXX executable ../bin/test_canonconsistent Linking CXX executable ../bin/test_bond Linking CXX executable ../bin/test_cansmi Linking CXX executable ../bin/test_charge-mmff94 Linking CXX executable ../bin/test_charge-gasteiger Linking CXX executable ../bin/test_canonstable Linking CXX executable ../bin/test_cistrans [ 88%] Built target test_charge-gasteiger [ 88%] Built target test_canonconsistent [ 88%] Built target test_canonstable [ 88%] Built target test_charge-mmff94 [ 88%] Built target test_builder Scanning dependencies of target test_conversion Scanning dependencies of target test_datatest [ 88%] [ 88%] Built target test_cistrans [ 88%] Built target test_cansmi [ 88%] Building CXX object test/CMakeFiles/test_conversion.dir/conversion.o Building CXX object test/CMakeFiles/test_datatest.dir/datatest.o [ 88%] Scanning dependencies of target test_ffgaff Built target test_bond Scanning dependencies of target test_ffghemical [ 89%] Building CXX object test/CMakeFiles/test_ffghemical.dir/ffghemical.o Scanning dependencies of target test_ffmmff94 Scanning dependencies of target test_formalcharge Scanning dependencies of target test_ffuff [ 89%] [ 89%] [ 90%] Building CXX object test/CMakeFiles/test_ffmmff94.dir/ffmmff94.o Building CXX object test/CMakeFiles/test_formalcharge.dir/formalcharge.o Building CXX object test/CMakeFiles/test_ffuff.dir/ffuff.o Scanning dependencies of target test_format [ 90%] Building CXX object test/CMakeFiles/test_format.dir/format.o [ 90%] Building CXX object test/CMakeFiles/test_ffgaff.dir/ffgaff.o Linking CXX executable ../bin/test_datatest Linking CXX executable ../bin/test_conversion Linking CXX executable ../bin/test_format [ 90%] Built target test_datatest Linking CXX executable ../bin/test_formalcharge Linking CXX executable ../bin/test_ffghemical Linking CXX executable ../bin/test_ffuff Linking CXX executable ../bin/test_ffgaff Linking CXX executable ../bin/test_ffmmff94 [ 90%] Built target test_conversion Scanning dependencies of target test_formula Scanning dependencies of target test_graphsym [ 91%] Building CXX object test/CMakeFiles/test_graphsym.dir/graphsymtest.o [ 91%] Building CXX object test/CMakeFiles/test_formula.dir/formula.o [ 91%] Built target test_formalcharge [ 91%] Built target test_format [ 91%] [ 91%] Built target test_ffmmff94 Scanning dependencies of target test_implicitH [ 91%] Built target test_ffgaff Built target test_ffuff [ 91%] [ 91%] Built target test_ffghemical Building CXX object test/CMakeFiles/test_implicitH.dir/implicitHtest.o Scanning dependencies of target test_inchiwrite [ 92%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o Scanning dependencies of target test_invalidsmarts Scanning dependencies of target test_internalcoord Scanning dependencies of target test_invalidsmiles Scanning dependencies of target test_isomorphism Linking CXX executable ../bin/test_formula [ 93%] Building CXX object test/CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o Linking CXX executable ../bin/test_graphsym [ 93%] [ 93%] [ 93%] Building CXX object test/CMakeFiles/test_internalcoord.dir/internalcoord.o Building CXX object test/CMakeFiles/test_invalidsmiles.dir/invalidsmiles.o Building CXX object test/CMakeFiles/test_isomorphism.dir/isomorphismtest.o [ 93%] Built target test_graphsym [ 93%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o [ 93%] Built target test_formula Scanning dependencies of target test_iterators [ 93%] Building CXX object test/CMakeFiles/test_iterators.dir/iterators.o Linking CXX executable ../bin/test_internalcoord Linking CXX executable ../bin/test_inchiwrite Linking CXX executable ../bin/test_implicitH Linking CXX executable ../bin/test_invalidsmiles Scanning dependencies of target test_logp_psa Linking CXX executable ../bin/test_iterators Linking CXX executable ../bin/test_invalidsmarts [ 94%] Building CXX object test/CMakeFiles/test_logp_psa.dir/logp_psa.o [ 94%] Built target test_internalcoord [ 94%] Built target test_invalidsmiles [ 94%] [ 94%] [ 94%] Built target test_inchiwrite Built target test_iterators Built target test_implicitH [ 94%] Built target test_invalidsmarts Scanning dependencies of target test_lssr [ 94%] Building CXX object test/CMakeFiles/test_lssr.dir/lssrtest.o Scanning dependencies of target test_mol Scanning dependencies of target test_math [ 94%] Scanning dependencies of target test_residue [ 95%] Scanning dependencies of target test_ringtest Building CXX object test/CMakeFiles/test_math.dir/math.o Building CXX object test/CMakeFiles/test_mol.dir/mol.o [ 95%] [ 96%] Building CXX object test/CMakeFiles/test_residue.dir/residue.o Building CXX object test/CMakeFiles/test_ringtest.dir/ringtest.o Scanning dependencies of target test_phmodel Linking CXX executable ../bin/test_isomorphism [ 96%] Building CXX object test/CMakeFiles/test_phmodel.dir/phmodel.o Linking CXX executable ../bin/test_logp_psa [ 96%] Built target test_isomorphism Scanning dependencies of target test_rotor [ 96%] Building CXX object test/CMakeFiles/test_rotor.dir/rotortest.o [ 96%] Built target test_logp_psa Linking CXX executable ../bin/test_math Scanning dependencies of target test_shuffle [ 96%] Building CXX object test/CMakeFiles/test_shuffle.dir/shuffletest.o Linking CXX executable ../bin/test_mol [ 96%] Built target test_math Scanning dependencies of target test_smartsparse Linking CXX executable ../bin/test_residue [ 97%] Building CXX object test/CMakeFiles/test_smartsparse.dir/smartsparse.o [ 97%] Built target test_mol Scanning dependencies of target test_smartstest [ 97%] Building CXX object test/CMakeFiles/test_smartstest.dir/smartstest.o Linking CXX executable ../bin/test_phmodel Linking CXX executable ../bin/test_ringtest [ 97%] Built target test_residue [ 97%] Built target test_phmodel Scanning dependencies of target test_smiles [ 97%] [ 97%] Building CXX object test/CMakeFiles/test_smiles.dir/smilestest.o Built target test_ringtest Scanning dependencies of target test_smilesmatch Scanning dependencies of target test_spectrophore [ 98%] Building CXX object test/CMakeFiles/test_spectrophore.dir/spectrophoretest.o Linking CXX executable ../bin/test_lssr [ 98%] Building CXX object test/CMakeFiles/test_smilesmatch.dir/smilesmatch.o Linking CXX executable ../bin/test_smartsparse [ 98%] Built target test_lssr Linking CXX executable ../bin/test_rotor [ 98%] Built target test_smartsparse Scanning dependencies of target test_squareplanar [ 98%] Building CXX object test/CMakeFiles/test_squareplanar.dir/squareplanartest.o Scanning dependencies of target test_stereo [ 99%] Building CXX object test/CMakeFiles/test_stereo.dir/stereotest.o [ 99%] Built target test_rotor Scanning dependencies of target test_stereoperception [ 99%] Linking CXX executable ../bin/test_smartstest Building CXX object test/CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o Linking CXX executable ../bin/test_smilesmatch [ 99%] Built target test_smartstest Linking CXX executable ../bin/test_squareplanar Linking CXX executable ../bin/test_spectrophore [ 99%] Built target test_smilesmatch Scanning dependencies of target test_tetranonplanar Scanning dependencies of target test_tetrahedral [ 99%] Building CXX object test/CMakeFiles/test_tetranonplanar.dir/tetranonplanartest.o [ 99%] Building CXX object test/CMakeFiles/test_tetrahedral.dir/tetrahedraltest.o Linking CXX executable ../bin/test_smiles [ 99%] Built target test_squareplanar [ 99%] Built target test_spectrophore Scanning dependencies of target test_tetraplanar [100%] Linking CXX executable ../bin/test_stereoperception [100%] Scanning dependencies of target test_uniqueid Built target test_smiles Building CXX object test/CMakeFiles/test_tetraplanar.dir/tetraplanartest.o [100%] Building CXX object test/CMakeFiles/test_uniqueid.dir/uniqueidtest.o Linking CXX executable ../bin/test_shuffle Scanning dependencies of target test_unitcell [100%] Building CXX object test/CMakeFiles/test_unitcell.dir/unitcell.o [100%] Built target test_stereoperception [100%] Built target test_shuffle Linking CXX executable ../bin/test_stereo Linking CXX executable ../bin/test_uniqueid [100%] Built target test_stereo [100%] Built target test_uniqueid make install Linking CXX executable ../bin/test_unitcell Linking CXX executable ../bin/test_tetrahedral Linking CXX executable ../bin/test_tetraplanar Linking CXX executable ../bin/test_tetranonplanar [100%] Built target test_unitcell [100%] Built target test_tetrahedral [100%] Built target test_tetraplanar [100%] Built target test_tetranonplanar [ 20%] Built target openbabel [ 22%] Built target plugin_charges [ 24%] Built target plugin_descriptors [ 24%] Built target plugin_fingerprints [ 26%] Built target plugin_forcefields [ 31%] Built target plugin_ops [ 44%] Built target inchi [ 44%] Built target APIInterface [ 44%] Built target CSRformat [ 44%] Built target MCDLformat [ 45%] Built target MNAformat [ 45%] Built target PQSformat [ 45%] Built target abinitformat [ 46%] Built target acesformat [ 46%] Built target acrformat [ 46%] Built target adfformat [ 47%] Built target alchemyformat [ 47%] Built target amberformat [ 48%] Built target asciiformat [ 48%] Built target balstformat [ 49%] Built target bgfformat [ 49%] Built target boxformat [ 49%] Built target cacaoformat [ 50%] Built target cacheformat [ 50%] Built target carformat [ 50%] Built target castepformat [ 50%] Built target cccformat [ 51%] Built target cdxmlformat [ 51%] Built target chem3dformat [ 52%] Built target chemdrawcdx [ 52%] Built target chemdrawct [ 52%] Built target chemkinformat [ 53%] Built target chemtoolformat [ 53%] Built target cifformat [ 54%] Built target cmlformat [ 54%] Built target cmlreactformat [ 55%] Built target copyformat [ 55%] Built target crkformat [ 55%] Built target crystal09format [ 56%] Built target cssrformat [ 56%] Built target dlpolyformat [ 56%] Built target dmolformat [ 56%] Built target fastaformat [ 57%] Built target fastsearchformat [ 57%] Built target fchkformat [ 57%] Built target featformat [ 58%] Built target fhformat [ 58%] Built target fhiaimsformat [ 58%] Built target fingerprintformat [ 59%] Built target fpsformat [ 59%] Built target freefracformat [ 59%] Built target gamessformat [ 60%] Built target gamessukformat [ 60%] Built target gausscubeformat [ 60%] Built target gaussformat [ 61%] Built target gausszmatformat [ 61%] Built target ghemicalformat [ 61%] Built target groformat [ 62%] Built target gromos96format [ 62%] Built target gulpformat [ 62%] Built target hinformat [ 63%] Built target inchiformat [ 63%] Built target jaguarformat [ 63%] Built target lmpdatformat [ 64%] Built target mdlformat [ 64%] Built target mmcifformat [ 64%] Built target mmodformat [ 65%] Built target mol2format [ 65%] Built target moldenformat [ 65%] Built target molproformat [ 66%] Built target molreport [ 66%] Built target mopacformat [ 66%] Built target mpdformat [ 67%] Built target mpqcformat [ 67%] Built target msiformat [ 67%] Built target msmsformat [ 68%] Built target nulformat [ 68%] Built target nwchemformat [ 68%] Built target opendxformat [ 69%] Built target outformat [ 69%] Built target pcmodelformat [ 69%] Built target pdbformat [ 69%] Built target pdbqtformat [ 70%] Built target png2format [ 70%] Built target pngformat [ 70%] Built target posformat [ 71%] Built target povrayformat [ 71%] Built target pqrformat [ 71%] Built target pubchem [ 72%] Built target pwscfformat [ 72%] Built target qchemformat [ 72%] Built target reportformat [ 72%] Built target rsmiformat [ 72%] Built target rxnformat [ 73%] Built target shelxformat [ 73%] Built target smilesformat [ 73%] Built target svgformat [ 74%] Built target textformat [ 74%] Built target thermoformat [ 74%] Built target tinkerformat [ 75%] Built target titleformat [ 75%] Built target turbomoleformat [ 75%] Built target unichemformat [ 76%] Built target vaspformat [ 76%] Built target viewmolformat [ 76%] Built target xedformat [ 77%] Built target xmlformat [ 77%] Built target xsfformat [ 78%] Built target xtcformat [ 78%] Built target xyzformat [ 78%] Built target yasaraformat [ 79%] Built target zindoformat [ 79%] Built target babel [ 79%] Built target obabel [ 79%] Built target obchiral [ 80%] Built target obconformer [ 80%] Built target obenergy [ 80%] Built target obfit [ 81%] Built target obgen [ 81%] Built target obgrep [ 81%] Built target obminimize [ 82%] Built target obprobe [ 82%] Built target obprop [ 82%] Built target obrotamer [ 83%] Built target obrotate [ 83%] Built target obspectrophore [ 84%] Built target roundtrip [ 85%] Built target test_aromatest [ 85%] Built target test_atom [ 85%] Built target test_automorphism [ 86%] Built target test_bond [ 86%] Built target test_builder [ 86%] Built target test_canonconsistent [ 87%] Built target test_canonstable [ 87%] Built target test_cansmi [ 87%] Built target test_charge-gasteiger [ 87%] Built target test_charge-mmff94 [ 88%] Built target test_cistrans [ 88%] Built target test_conversion [ 88%] Built target test_datatest [ 89%] Built target test_ffgaff [ 89%] Built target test_ffghemical [ 89%] Built target test_ffmmff94 [ 90%] Built target test_ffuff [ 90%] Built target test_formalcharge [ 90%] Built target test_format [ 91%] Built target test_formula [ 91%] Built target test_graphsym [ 91%] Built target test_implicitH [ 92%] Built target test_inchiwrite [ 92%] Built target test_internalcoord [ 93%] Built target test_invalidsmarts [ 93%] Built target test_invalidsmiles [ 93%] Built target test_isomorphism [ 93%] Built target test_iterators [ 94%] Built target test_logp_psa [ 94%] Built target test_lssr [ 94%] Built target test_math [ 95%] Built target test_mol [ 95%] Built target test_phmodel [ 95%] Built target test_residue [ 96%] Built target test_ringtest [ 96%] Built target test_rotor [ 96%] Built target test_shuffle [ 97%] Built target test_smartsparse [ 97%] Built target test_smartstest [ 97%] Built target test_smiles [ 98%] Built target test_smilesmatch [ 98%] Built target test_spectrophore [ 98%] Built target test_squareplanar [ 99%] Built target test_stereo [ 99%] Built target test_stereoperception CMake Error at cmake_install.cmake:36 (file): file cannot create directory: /var/lib/jenkins/rmg-spp/openbabel-2.3.2/install/include/openbabel-2.0/openbabel. Maybe need administrative privileges. make: *** [install] Error 1 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib export CC=cc export CXX=CC export FC=ftn # install plplot library cd $INSTDIR bash: line 45: cd: /var/lib/jenkins/rmg-spp: No such file or directory git clone git://git.code.sf.net/p/plplot/plplot plplot.git [ 99%] Built target test_tetrahedral [ 99%] Built target test_tetranonplanar [100%] Built target test_tetraplanar [100%] Built target test_uniqueid [100%] Built target test_unitcell Install the project... -- Install configuration: "RelWithDebInfo" Cloning into 'plplot.git'... 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done -- Detecting C compile features -- Detecting C compile features - done -- CMake version = 3.1.3 -- CMAKE_SYSTEM_NAME = Linux -- SH_EXECUTABLE = /bin/bash -- Checking whether system has ANSI C header files -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Performing Test memchrExists -- Performing Test memchrExists - Success -- Performing Test freeExists -- Performing Test freeExists - Success -- Check for whether ctype.h macros work on characters with the high bit set. -- High-bit characters - work -- ANSI C header files - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file termios.h -- Looking for include file termios.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for crt_externs.h -- Looking for crt_externs.h - not found -- Performing Test HAVE_SYS_WAIT_H -- Performing Test HAVE_SYS_WAIT_H - Success -- Looking for DIR symbol in sys/types.h;dirent.h -- Looking for DIR symbol in sys/types.h;dirent.h - found -- Check for signal return type in <signal.h> -- Check for signal handler return type type void - found -- Looking for popen -- Looking for popen - found -- Looking for usleep -- Looking for usleep - found -- Looking for nanosleep -- Looking for nanosleep - found -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for mkdtemp -- Looking for mkdtemp - found -- Looking for mkfifo -- Looking for mkfifo - found -- Looking for unlink -- Looking for unlink - found -- Looking for _NSGetArgc -- Looking for _NSGetArgc - not found -- Looking for isfinite -- Looking for isfinite - found -- Looking for finite -- Looking for finite - found -- Looking for isnan -- Looking for isnan - found -- Looking for isinf -- Looking for isinf - found -- Looking for snprintf -- Looking for snprintf - found -- SWIG_VERSION = 3.0.7 -- Found Perl: /usr/bin/perl (found version "5.10.0") -- WARNING: Perl module XML::DOM not found -- The CXX compiler identification is GNU 4.9.3 -- Check for working CXX compiler: /opt/cray/craype/2.5.4/bin/CC -- Check for working CXX compiler: /opt/cray/craype/2.5.4/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for using namespace support -- Check for using namespace - found -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Check for broken isnan support in <cmath> -- Check for isnan in <cmath> - found -- Check for using stdint.h with CXX compiler -- Check for using stdint.h with CXX compiler - ok -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- Looking for pkg-config - found -- cxx_compiler_library_pathname_list = /opt/cray/atp/2.0.1/libApp/libAtpSigHandler.so;/opt/cray/atp/2.0.1/libApp/libAtpSigHCommData.a;/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/librca.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libfmpich.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpichcxx.so;/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib/libdarshan-mpi-io.a;/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib/libdarshan-posix.a;/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib/libdarshan-stubs.a;/usr/lib64/libz.so;/usr/lib64/librt.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f_mpi.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f_threads.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3_mpi.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3_threads.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpichcxx_gnu_49.so;/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib/libsci_gnu_49_mpi.so;/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib/libsci_gnu_49.so;/opt/gcc/4.9.3/snos/lib64/libgfortran.so;/opt/gcc/4.9.3/snos/lib64/libquadmath.so;/usr/lib64/libm.so;/usr/lib64/libpthread.so;/opt/gcc/4.9.3/snos/lib64/libstdc++.so;/usr/lib64/libm.so;/usr/lib64/libc.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- X11_FOUND = 1 -- X11_INCLUDE_DIR = /usr/include -- X11_COMPILE_FLAGS = -I/usr/include -- X11_LIBRARIES = /usr/lib64/libSM.so;/usr/lib64/libICE.so;/usr/lib64/libX11.so;/usr/lib64/libXext.so -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /opt/cray/craype/2.5.4/bin/ftn -- Check for working Fortran compiler: /opt/cray/craype/2.5.4/bin/ftn -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /opt/cray/craype/2.5.4/bin/ftn supports Fortran 90 -- Checking whether /opt/cray/craype/2.5.4/bin/ftn supports Fortran 90 -- yes -- Check if isnan function is available in fortran -- Check for isnan in fortran - not found -- NOTICE: Found: /opt/cray/craype/2.5.4/bin/ftn -- Found JNI: /opt/java/jdk1.8.0_51/jre/lib/amd64/libjawt.so -- Found PythonInterp: /usr/bin/python (found version "2.6.9") -- Found PythonLibs: /usr/lib64/libpython2.6.so (found version "2.6.9") -- PYTHON_VERSION = 2.6.9 -- Building Python binding with plsmem() support -- WARNING: The octave command not found. Disabling Octave binding -- Start determining consistent system data for Tcl and friends -- Found Tclsh: /usr/bin/tclsh (found version "8.5") -- Found TCL: /usr/lib64/libtcl8.5.so -- Found TCLTK: /usr/lib64/libtcl8.5.so -- Found TK: /usr/lib64/libtk8.5.so can't find package Itcl 3 while executing "package require Itcl 3" invoked from within "puts -nonewline [package require Itcl 3]" (file "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/CheckITCL_Available.tcl" line 1) Application initialization failed: no display name and no $DISPLAY environment variable Error in startup script: no display name and no $DISPLAY environment variable while executing "load /usr/lib64/tcl/tk8.5/../../libtk8.5.so Tk" ("package ifneeded Tk 8.5.5" script) invoked from within "package require Tk" invoked from within "puts -nonewline [package require Tk]" (file "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/CheckTK_VERSION.tcl" line 1) -- Looking for Tcl - found -- TCL_INCLUDE_PATH = /usr/include -- TCL_LIBRARY = /usr/lib64/libtcl8.5.so -- TCL_STUB_LIBRARY = /usr/lib64/libtclstub8.5.a -- TCL_LIBRARY_PATH = /usr/lib64 -- Looking for tclsh - found -- TCL_TCLSH = /usr/bin/tclsh -- Looking for Tcl version with tclsh - found -- PLPLOT_TCL_VERSION = 8.5.5 -- Itcl not available or not compatible with current Tcl shell -- WARNING: Disabling Itcl interface code -- Looking for Tk - found -- TK_INCLUDE_PATH = /usr/include;/usr/include -- TK_LIBRARY = /usr/lib64/libtk8.5.so -- TK_STUB_LIBRARY = /usr/lib64/libtkstub8.5.a -- TK_LIBRARY_PATH = /usr/lib64 -- Looking for wish - found -- TK_WISH = /usr/bin/wish -- Looking for Tk version with wish - not found -- WARNING: setting ENABLE_tk to OFF -- WARNING: Because Tk is disabled must disable Itk as well -- Finished determining consistent system data for Tcl and friends -- A test cmake run with language = Ada enabled failed. -- Specify -DENABLE_compiler_diagnostics=ON to see full CMake diagnostics concerning this failure. -- WARNING: no working Ada compiler so disabling Ada binding and examples. -- LUA_VERSION = 5.1 -- LUA_INCLUDE_DIR = LUA_INCLUDE_DIR-NOTFOUND -- LUA_LIBRARIES = -- Could NOT find Lua (missing: LUA_LIBRARIES LUA_INCLUDE_DIR) -- WARNING: Lua library and/or header not found. Disabling Lua binding Fonts not found - disabling freetype -- A test cmake run with language = D enabled failed. -- Specify -DENABLE_compiler_diagnostics=ON to see full CMake diagnostics concerning this failure. -- WARNING: no working D compiler so disabling D binding and examples. -- WARNING: SHAPELIB not found. Setting HAVE_SHAPELIB to OFF. -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.3.7") -- FREETYPE_CFLAGS = -I/usr/include -I/usr/include/freetype2 -- FREETYPE_LIBRARIES = /usr/lib64/libfreetype.so -- Check for NaN awareness in C compiler -- Check for NaN awareness in C compiler - found -- Neither qhull/qhull_a.h header nor libqhull/qhull_a.h could be found -- qhull library could not be found -- Could NOT find QHULL (missing: QHULL_INCLUDE_DIRS QHULL_LIBRARIES QHULL_LIBRARY_DIRS) -- QHULL_INCLUDE_DIRS = -- QHULL_LIBRARIES = -- WARNING: at least one of QHULL_INCLUDE_DIRS or QHULL_LIBRARIES is false so setting PL_HAVE_QHULL to OFF. -- checking for module 'pango' -- found pango, version 1.26.2 -- checking for module 'pangoft2' -- found pangoft2, version 1.26.2 -- Found LTDL: /usr/lib64/libltdl.so -- LTDL_INCLUDE_DIR = /usr/include -- LTDL_LIBRARY_DIR = /usr/lib64 -- LTDL_LIBRARIES = /usr/lib64/libltdl.so -- checking for module 'pangocairo' -- found pangocairo, version 1.26.2 -- Not a Windows platform so setting wincairo driver to OFF. -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create includedir = libdir = linkflags = cflags = -- Looking for pthread_create - found -- Found Threads: TRUE -- WARNING: ENABLE_tk OFF. Therefore turning off tk, tkwin, and ntk devices -- checking for modules 'lasi;pango;pangoft2' -- package 'lasi' not found -- WARNING: pango, pangoft2, or lasi not found with pkg-config. Setting PLD_psttf to OFF. Please install all of these packages and/or set the environment variable PKG_CONFIG_PATH appropriately. -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS CMake Warning at cmake/modules/qt.cmake:144 (find_package): By not providing "FindQt5.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "Qt5", but CMake did not find one. Could not find a package configuration file provided by "Qt5" (requested version 5.3.1) with any of the following names: Qt5Config.cmake qt5-config.cmake Add the installation prefix of "Qt5" to CMAKE_PREFIX_PATH or set "Qt5_DIR" to a directory containing one of the above files. If "Qt5" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake/modules/drivers.cmake:96 (include) cmake/modules/plplot.cmake:549 (include) CMakeLists.txt:135 (include) -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Could NOT find Qt4: Found unsuitable version "4.6.3", but required is at least "4.8.6" (found /usr/bin/qmake) -- WARNING: Suitable Qt4 development environment not found so trying Qt5 instead. -- WARNING: Suitable Qt5 development environment not found so disabling qt -- WARNING: ENABLE_qt is OFF so setting all qt devices to OFF. -- WARNING: PLPLOT_USE_QT5 is ON so setting ENABLE_pyqt4 to OFF. -- WARNING: PLD_extqt is OFF so setting ENABLE_pyqt5 to OFF. -- wxWidgets_FOUND : FALSE -- wxWidgets_INCLUDE_DIRS : -- wxWidgets_LIBRARY_DIRS : -- wxWidgets_LIBRARIES : -- wxWidgets_CXX_FLAGS : -- wxWidgets_USE_FILE : UsewxWidgets -- WARNING: wxWidgets or its libraries not found so setting all wxwidgets devices to OFF. -- WARNING: PLD_wxwidgets is OFF so setting ENABLE_wxwidgets to OFF. -- WARNING: ENABLE_wxwidgets is OFF so setting all wxwidgets devices to OFF. -- Looking for haru pdf header and library -- Looking for haru pdf header and library - not found -- WARNING: Setting PLD_pdf to OFF. pc_libplplot_LINK_FLAGS = /usr/lib64/libltdl.so;/usr/lib64/libm.so;-lcsirocsa;-lqsastime -- WARNING: The ocamlc application not found. Disabling OCaml binding -- WARNING: ENABLE_ocaml is OFF so disabling Plcairo module and lablgtk2 support -- WARNING: validate target will not be available to check for syntax issues in the PLplot DocBook documentation because onsgmls (or env) was not found. -- WARNING: Perl modules XML::Parser and/or XML::DOM not available so cannot check that swig_documentation.i is up to date. -- ENABLE_itcl: OFF -- Itcl libraries: plplot;/usr/lib64/libtcl8.5.so -- TEST_ENVIRONMENT = EXAMPLES_DIR=/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/examples SRC_EXAMPLES_DIR=/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/examples OUTPUT_DIR=/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/ctest_examples_output_dir VC_CTEST_DIRECTORY= -- Determine compile and link flags for extXdrawable_demo -- checking for module 'gtk+-x11-2.0' -- found gtk+-x11-2.0, version 2.18.9 -- Determine compile and link flags for ext-cairo-test -- checking for module 'cairo' -- found cairo, version 1.8.8 Summary of CMake build system results for PLplot Install location variables which can be set by the user: CMAKE_INSTALL_PREFIX: /var/lib/jenkins/rmg-spp/plplot.git/install CMAKE_INSTALL_EXEC_PREFIX /var/lib/jenkins/rmg-spp/plplot.git/install CMAKE_INSTALL_BINDIR /var/lib/jenkins/rmg-spp/plplot.git/install/bin CMAKE_INSTALL_DATADIR /var/lib/jenkins/rmg-spp/plplot.git/install/share CMAKE_INSTALL_LIBDIR /var/lib/jenkins/rmg-spp/plplot.git/install/lib CMAKE_INSTALL_INCLUDEDIR /var/lib/jenkins/rmg-spp/plplot.git/install/include CMAKE_INSTALL_INFODIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/info CMAKE_INSTALL_MANDIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/man Derived install location variables: DATA_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/plplot5.12.0 LIB_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/lib INCLUDE_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/include/plplot BIN_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/bin TCL_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/tcl ADA_INCLUDE_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/ada/adainclude/plplotada ADA_LIB_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/lib/ada/adalib/plplotada PYTHON_INSTDIR /var/lib/jenkins/rmg-spp/plplot.git/install/lib64/python2.6/site-packages DRV_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers DOC_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/doc/plplot MAN_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/man INFO_DIR /var/lib/jenkins/rmg-spp/plplot.git/install/share/info Other important CMake variables: CMAKE_SYSTEM_NAME: Linux UNIX: 1 WIN32: APPLE: MSVC: (MSVC_VERSION: ) MINGW: MSYS: CYGWIN: BORLAND: WATCOM: SWIG_FOUND: 1 PERL_FOUND: TRUE X11_FOUND: 1 CMAKE_BUILD_TYPE: CMAKE_C_COMPILER CMAKE_C_FLAGS: /opt/cray/craype/2.5.4/bin/cc CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS: /opt/cray/craype/2.5.4/bin/CC CMAKE_Fortran_COMPILER CMAKE_Fortran_FLAGS: /opt/cray/craype/2.5.4/bin/ftn Target Fortran: PYTHON_EXECUTABLE: /usr/bin/python PYTHON_INCLUDE_PATH: /usr/include/python2.6 PYTHON_LIBRARIES: /usr/lib64/libpython2.6.so NUMPY_INCLUDE_PATH: /usr/lib64/python2.6/site-packages/numpy/core/include/numpy ENABLE_DYNDRIVERS: ON DRIVERS_LIST: cairo;mem;null;ps;svg;xfig;xwin DEVICES_LIST: memcairo;extcairo;pdfcairo;pngcairo;pscairo;epscairo;svgcairo;xcairo;mem;null;ps;svg;xfig;xwin Library options: BUILD_SHARED_LIBS: ON PL_DOUBLE: ON Optional libraries: PL_HAVE_QHULL: OFF WITH_CSA: ON PL_HAVE_FREETYPE: PL_HAVE_PTHREAD: ON HAVE_AGG: HAVE_SHAPELIB: OFF Language Bindings: ENABLE_ada: OFF ENABLE_cxx: ON ENABLE_d: OFF ENABLE_f95: ON ENABLE_java: ON ENABLE_lua: OFF ENABLE_ocaml: OFF ENABLE_octave: OFF ENABLE_pdl: OFF ENABLE_python: ON ENABLE_qt: OFF ENABLE_pyqt4: OFF ENABLE_pyqt5: OFF ENABLE_tcl: ON ENABLE_itcl: OFF ENABLE_tk: OFF ENABLE_itk: OFF ENABLE_wxwidgets: OFF -- Configuring done -- Generating done make -- Build files have been written to: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build Scanning dependencies of target csirocsa [ 0%] Building C object lib/csa/CMakeFiles/csirocsa.dir/csa.c.o Linking C shared library libcsirocsa.so [ 0%] Built target csirocsa Scanning dependencies of target deltaT-gen [ 0%] Building C object lib/qsastime/CMakeFiles/deltaT-gen.dir/deltaT-gen.c.o [ 1%] Building C object lib/qsastime/CMakeFiles/deltaT-gen.dir/dspline.c.o Linking C executable deltaT-gen [ 1%] Built target deltaT-gen Scanning dependencies of target deltaT.h_built [ 1%] Generating deltaT.h [ 1%] Built target deltaT.h_built Scanning dependencies of target tai-utc-gen [ 2%] Building C object lib/qsastime/CMakeFiles/tai-utc-gen.dir/tai-utc-gen.c.o Linking C executable tai-utc-gen [ 2%] Built target tai-utc-gen Scanning dependencies of target tai-utc.h_built [ 2%] Generating tai-utc.h [ 2%] Built target tai-utc.h_built Scanning dependencies of target qsastime [ 2%] Building C object lib/qsastime/CMakeFiles/qsastime.dir/qsastime.c.o [ 2%] Building C object lib/qsastime/CMakeFiles/qsastime.dir/dsplint.c.o Linking C shared library libqsastime.so [ 2%] Built target qsastime Scanning dependencies of target plhershey-unicode-gen [ 2%] Building C object include/CMakeFiles/plhershey-unicode-gen.dir/__/fonts/plhershey-unicode-gen.c.o Linking C executable plhershey-unicode-gen [ 2%] Built target plhershey-unicode-gen Scanning dependencies of target plhershey-unicode.h_built [ 3%] Generating plhershey-unicode.h [ 3%] Built target plhershey-unicode.h_built Scanning dependencies of target plplot [ 3%] Building C object src/CMakeFiles/plplot.dir/pdfutils.c.o [ 3%] Building C object src/CMakeFiles/plplot.dir/plmem.c.o [ 3%] Building C object src/CMakeFiles/plplot.dir/plaffine.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plarc.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plargs.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plbox.c.o [ 4%] Building C 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src/CMakeFiles/plplot.dir/plshade.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plstdio.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plstripc.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plsym.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/pltick.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plvpor.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plwind.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plbuf.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/plgridd.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/plvect.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/mt19937ar.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/pltime.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/pllegend.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/plmap.c.o Linking C shared library libplplot.so [ 13%] Built target plplot Scanning dependencies of target concatenate_pkgIndex.tcl [ 13%] Generating pkgIndex.tcl [ 13%] Built target concatenate_pkgIndex.tcl Scanning dependencies of target plplotcxx [ 13%] Building CXX object bindings/c++/CMakeFiles/plplotcxx.dir/plstream.cc.o Linking CXX shared library libplplotcxx.so [ 13%] Built target plplotcxx Scanning dependencies of target plplotf95 [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_small_modules.f90.o included_plplot_real_interfaces.f90:109.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plcont( z, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plcont' at (1) is marked PRIVATE but has been given the binding label 'c_plcont' included_plplot_real_interfaces.f90:133.8: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: function interface_plf2evalr( ix, iy, data ) bind(c, name = 'plf2evalr' ) 1 Warning: Symbol 'interface_plf2evalr' at (1) is marked PRIVATE but has been given the binding label 'plf2evalr' included_plplot_real_interfaces.f90:145.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfcont( lookup, grid, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plfcont' at (1) is marked PRIVATE but has been given the binding label 'plfcont' included_plplot_real_interfaces.f90:179.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfill( n, x, y ) bind( c, name='c_plfill') 1 Warning: Symbol 'interface_plfill' at (1) is marked PRIVATE but has been given the binding label 'c_plfill' included_plplot_real_interfaces.f90:189.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfvect( lookup, fgrid1, fgrid2, nx, ny, scale, transform, data ) bind(c, name = 'plfvect' ) 1 Warning: Symbol 'interface_plfvect' at (1) is marked PRIVATE but has been given the binding label 'plfvect' included_plplot_real_interfaces.f90:222.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plimagefr( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr' at (1) is marked PRIVATE but has been given the binding label 'c_plimagefr' included_plplot_real_interfaces.f90:247.43: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plimagefr_null( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr_null' at (1) is marked PRIVATE but has been given the binding label 'plimagefr_null' included_plplot_real_interfaces.f90:261.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmap( proc, name, minx, maxx, miny, maxy ) & 1 Warning: Symbol 'interface_plmap' at (1) is marked PRIVATE but has been given the binding label 'c_plmap' included_plplot_real_interfaces.f90:273.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapfill( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapfill' at (1) is marked PRIVATE but has been given the binding label 'c_plmapfill' included_plplot_real_interfaces.f90:287.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapline( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapline' at (1) is marked PRIVATE but has been given the binding label 'c_plmapline' included_plplot_real_interfaces.f90:301.40: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapstring( proc, name, string, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapstring' at (1) is marked PRIVATE but has been given the binding label 'c_plmapstring' included_plplot_real_interfaces.f90:315.37: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmaptex( proc, name, dx, dy, just, text, minx, maxx, miny, maxy, plotentry ) & 1 Warning: Symbol 'interface_plmaptex' at (1) is marked PRIVATE but has been given the binding label 'c_plmaptex' included_plplot_real_interfaces.f90:328.40: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmeridians( proc, dlong, dlat, minlong, maxlong, minlat, maxlat ) & 1 Warning: Symbol 'interface_plmeridians' at (1) is marked PRIVATE but has been given the binding label 'c_plmeridians' included_plplot_real_interfaces.f90:339.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshade( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade' at (1) is marked PRIVATE but has been given the binding label 'c_plshade' included_plplot_real_interfaces.f90:376.41: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshade_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade_null' at (1) is marked PRIVATE but has been given the binding label 'plshade_null' included_plplot_real_interfaces.f90:402.37: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshades( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades' at (1) is marked PRIVATE but has been given the binding label 'c_plshades' included_plplot_real_interfaces.f90:438.42: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshades_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades_null' at (1) is marked PRIVATE but has been given the binding label 'plshades_null' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:60.41: subroutine interface_plslabelfunc( proc, data ) bind(c, name = 'c_plslabelfunc' ) 1 Warning: Symbol 'interface_plslabelfunc' at (1) is marked PRIVATE but has been given the binding label 'c_plslabelfunc' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:69.41: subroutine interface_plstransform( proc, data ) bind(c, name = 'c_plstransform' ) 1 Warning: Symbol 'interface_plstransform' at (1) is marked PRIVATE but has been given the binding label 'c_plstransform' included_plplot_real_interfaces.f90:463.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr0( x, y, tx, ty, data ) bind(c, name = 'pltr0' ) 1 Warning: Symbol 'interface_pltr0' at (1) is marked PRIVATE but has been given the binding label 'pltr0' included_plplot_real_interfaces.f90:474.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr1( x, y, tx, ty, data ) bind(c, name = 'pltr1' ) 1 Warning: Symbol 'interface_pltr1' at (1) is marked PRIVATE but has been given the binding label 'pltr1' included_plplot_real_interfaces.f90:485.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr2f( x, y, tx, ty, data ) bind(c, name = 'pltr2f' ) 1 Warning: Symbol 'interface_pltr2f' at (1) is marked PRIVATE but has been given the binding label 'pltr2f' included_plplot_real_interfaces.f90:497.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plvect( u, v, nx, ny, scale, transform, data ) bind(c, name = 'c_plvect' ) 1 Warning: Symbol 'interface_plvect' at (1) is marked PRIVATE but has been given the binding label 'c_plvect' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:202.27: subroutine pllabelerf2c( axis, value, label, length, data ) bind(c, name = 'plplot_double_private_pllabelerf2c') 1 Warning: Symbol 'pllabelerf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pllabelerf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:223.32: subroutine pllabelerf2c_data( axis, value, label, length, data ) bind(c, name = 'plplot_double_private_pllabelerf2c_data') 1 Warning: Symbol 'pllabelerf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pllabelerf2c_data' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:186.27: subroutine plmapformf2c( n, x, y ) bind(c, name = 'plplot_double_private_plmapformf2c') 1 Warning: Symbol 'plmapformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_plmapformf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:239.29: subroutine pltransformf2c( x, y, tx, ty, data ) bind(c, name = 'plplot_double_private_pltransformf2c') 1 Warning: Symbol 'pltransformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pltransformf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_double.f90:256.34: subroutine pltransformf2c_data( x, y, tx, ty, data ) bind(c, name = 'plplot_double_private_pltransformf2c_data') 1 Warning: Symbol 'pltransformf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pltransformf2c_data' [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_double.f90.o [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_single.f90.o included_plplot_real_interfaces.f90:109.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plcont( z, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plcont' at (1) is marked PRIVATE but has been given the binding label 'c_plcont' included_plplot_real_interfaces.f90:133.8: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: function interface_plf2evalr( ix, iy, data ) bind(c, name = 'plf2evalr' ) 1 Warning: Symbol 'interface_plf2evalr' at (1) is marked PRIVATE but has been given the binding label 'plf2evalr' included_plplot_real_interfaces.f90:145.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfcont( lookup, grid, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plfcont' at (1) is marked PRIVATE but has been given the binding label 'plfcont' included_plplot_real_interfaces.f90:179.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfill( n, x, y ) bind( c, name='c_plfill') 1 Warning: Symbol 'interface_plfill' at (1) is marked PRIVATE but has been given the binding label 'c_plfill' included_plplot_real_interfaces.f90:189.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfvect( lookup, fgrid1, fgrid2, nx, ny, scale, transform, data ) bind(c, name = 'plfvect' ) 1 Warning: Symbol 'interface_plfvect' at (1) is marked PRIVATE but has been given the binding label 'plfvect' included_plplot_real_interfaces.f90:222.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plimagefr( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr' at (1) is marked PRIVATE but has been given the binding label 'c_plimagefr' included_plplot_real_interfaces.f90:247.43: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plimagefr_null( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr_null' at (1) is marked PRIVATE but has been given the binding label 'plimagefr_null' included_plplot_real_interfaces.f90:261.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmap( proc, name, minx, maxx, miny, maxy ) & 1 Warning: Symbol 'interface_plmap' at (1) is marked PRIVATE but has been given the binding label 'c_plmap' included_plplot_real_interfaces.f90:273.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapfill( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapfill' at (1) is marked PRIVATE but has been given the binding label 'c_plmapfill' included_plplot_real_interfaces.f90:287.38: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapline( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapline' at (1) is marked PRIVATE but has been given the binding label 'c_plmapline' included_plplot_real_interfaces.f90:301.40: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapstring( proc, name, string, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapstring' at (1) is marked PRIVATE but has been given the binding label 'c_plmapstring' included_plplot_real_interfaces.f90:315.37: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmaptex( proc, name, dx, dy, just, text, minx, maxx, miny, maxy, plotentry ) & 1 Warning: Symbol 'interface_plmaptex' at (1) is marked PRIVATE but has been given the binding label 'c_plmaptex' included_plplot_real_interfaces.f90:328.40: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmeridians( proc, dlong, dlat, minlong, maxlong, minlat, maxlat ) & 1 Warning: Symbol 'interface_plmeridians' at (1) is marked PRIVATE but has been given the binding label 'c_plmeridians' included_plplot_real_interfaces.f90:339.36: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshade( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade' at (1) is marked PRIVATE but has been given the binding label 'c_plshade' included_plplot_real_interfaces.f90:376.41: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshade_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade_null' at (1) is marked PRIVATE but has been given the binding label 'plshade_null' included_plplot_real_interfaces.f90:402.37: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshades( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades' at (1) is marked PRIVATE but has been given the binding label 'c_plshades' included_plplot_real_interfaces.f90:438.42: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshades_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades_null' at (1) is marked PRIVATE but has been given the binding label 'plshades_null' included_plplot_real_interfaces.f90:463.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr0( x, y, tx, ty, data ) bind(c, name = 'pltr0' ) 1 Warning: Symbol 'interface_pltr0' at (1) is marked PRIVATE but has been given the binding label 'pltr0' included_plplot_real_interfaces.f90:474.34: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr1( x, y, tx, ty, data ) bind(c, name = 'pltr1' ) 1 Warning: Symbol 'interface_pltr1' at (1) is marked PRIVATE but has been given the binding label 'pltr1' included_plplot_real_interfaces.f90:485.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr2f( x, y, tx, ty, data ) bind(c, name = 'pltr2f' ) 1 Warning: Symbol 'interface_pltr2f' at (1) is marked PRIVATE but has been given the binding label 'pltr2f' included_plplot_real_interfaces.f90:497.35: Included at /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plvect( u, v, nx, ny, scale, transform, data ) bind(c, name = 'c_plvect' ) 1 Warning: Symbol 'interface_plvect' at (1) is marked PRIVATE but has been given the binding label 'c_plvect' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:65.27: subroutine pllabelerf2c( axis, value, label, length, data ) bind(c, name = 'plplot_single_private_pllabelerf2c') 1 Warning: Symbol 'pllabelerf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pllabelerf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:86.32: subroutine pllabelerf2c_data( axis, value, label, length, data ) bind(c, name = 'plplot_single_private_pllabelerf2c_data') 1 Warning: Symbol 'pllabelerf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pllabelerf2c_data' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:49.27: subroutine plmapformf2c( n, x, y ) bind(c, name = 'plplot_single_private_plmapformf2c') 1 Warning: Symbol 'plmapformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_plmapformf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:102.29: subroutine pltransformf2c( x, y, tx, ty, data ) bind(c, name = 'plplot_single_private_pltransformf2c') 1 Warning: Symbol 'pltransformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pltransformf2c' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/bindings/f95/plplot_single.f90:119.34: subroutine pltransformf2c_data( x, y, tx, ty, data ) bind(c, name = 'plplot_single_private_pltransformf2c_data') 1 Warning: Symbol 'pltransformf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pltransformf2c_data' [ 14%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot.f90.o Linking Fortran shared library libplplotf95.so [ 14%] Built target plplotf95 Scanning dependencies of target plplot.tcl_target [ 14%] Generating plplot.tcl [ 14%] Built target plplot.tcl_target Scanning dependencies of target tclmatrix [ 15%] Building C object bindings/tcl/CMakeFiles/tclmatrix.dir/tclMatrix.c.o [ 15%] Building C object bindings/tcl/CMakeFiles/tclmatrix.dir/matrixInit.c.o Linking C shared library libtclmatrix.so [ 15%] Built target tclmatrix [ 15%] Generating tclgen.h, 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concatenate_pkgIndex.tcl [ 13%] Built target plplotcxx [ 14%] Built target plplotf95 [ 14%] Built target plplot.tcl_target [ 15%] Built target tclmatrix [ 15%] Built target plplottcltk [ 16%] Built target plplottcltk_Main [ 16%] Built target pltcl [ 16%] Built target tclIndex_tcl [ 16%] Built target _plplotcmodule [ 16%] Built target _plplotcmodule_fixed [ 17%] Built target plplotjavac_wrap [ 21%] Built target plplot_core [ 22%] Built target cairo [ 22%] Built target mem [ 23%] Built target null [ 24%] Built target ps [ 24%] Built target svg [ 24%] Built target test-drv-info [ 25%] Built target xwin [ 25%] Built target test_xwin_dyndriver [ 26%] Built target test_cairo_dyndriver [ 26%] Built target test_mem_dyndriver [ 26%] Built target test_null_dyndriver [ 26%] Built target test_ps_dyndriver [ 28%] Built target test_svg_dyndriver [ 28%] Built target xfig [ 28%] Built target test_xfig_dyndriver [ 28%] Built target test_dyndrivers [ 28%] Built target parity_bit_check [ 28%] Built 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target tcl_examples CMake Error at cmake_install.cmake:44 (file): file cannot create directory: /var/lib/jenkins/rmg-spp/plplot.git/install/share/doc/plplot. Maybe need administrative privileges. make: *** [install] Error 1 # install CPU-version of RMG cd $INSTDIR bash: line 55: cd: /var/lib/jenkins/rmg-spp: No such file or directory wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz --2017-02-15 10:23:43-- http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz Resolving downloads.sourceforge.net... 216.34.181.59 Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected. HTTP request sent, awaiting response... 302 Found Location: https://svwh.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz [following] --2017-02-15 10:23:43-- https://svwh.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz Resolving svwh.dl.sourceforge.net... 72.5.72.15, 2606:c680:0:b:3830:34ff:fe66:6663 Connecting to svwh.dl.sourceforge.net|72.5.72.15|:443... connected. [100%] Built target tclIndex_examples_tcl Install the project... -- Install configuration: "" HTTP request sent, awaiting response... 200 OK Length: 42363399 (40M) [application/x-gzip] Saving to: `rmg-release_2.1.tar.gz' 0K .......... .......... .......... .......... .......... 0% 910K 45s 50K .......... .......... .......... .......... .......... 0% 866K 47s 100K .......... .......... .......... .......... .......... 0% 868K 47s 150K .......... .......... .......... .......... .......... 0% 9.90M 36s 200K .......... .......... .......... .......... .......... 0% 991K 37s 250K .......... .......... .......... .......... .......... 0% 14.4M 31s 300K .......... .......... .......... .......... .......... 0% 125K 74s 350K .......... .......... .......... .......... .......... 0% 57.1M 65s 400K .......... .......... .......... .......... .......... 1% 910K 62s 450K .......... .......... .......... .......... .......... 1% 59.0M 56s 500K .......... .......... .......... .......... 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.......... .......... 24% 1.50M 4s 10000K .......... .......... .......... .......... .......... 24% 82.0M 4s 10050K .......... .......... .......... .......... .......... 24% 79.7M 4s 10100K .......... .......... .......... .......... .......... 24% 13.1M 4s 10150K .......... .......... .......... .......... .......... 24% 53.2M 4s 10200K .......... .......... .......... .......... .......... 24% 63.9M 4s 10250K .......... .......... .......... .......... .......... 24% 3.69M 4s 10300K .......... .......... .......... .......... .......... 25% 65.5M 4s 10350K .......... .......... .......... .......... .......... 25% 8.72M 4s 10400K .......... .......... .......... .......... .......... 25% 80.2M 4s 10450K .......... .......... .......... .......... .......... 25% 80.6M 4s 10500K .......... .......... .......... .......... .......... 25% 5.07M 4s 10550K .......... .......... .......... .......... .......... 25% 29.8M 4s 10600K .......... .......... .......... .......... .......... 25% 2.95M 4s 10650K .......... .......... .......... .......... .......... 25% 68.1M 4s 10700K .......... .......... .......... .......... .......... 25% 54.0M 4s 10750K .......... .......... .......... .......... .......... 26% 22.9M 4s 10800K .......... .......... .......... .......... .......... 26% 80.5M 4s 10850K .......... .......... .......... .......... .......... 26% 15.7M 4s 10900K .......... .......... .......... .......... .......... 26% 64.2M 4s 10950K .......... .......... .......... .......... .......... 26% 79.3M 4s 11000K .......... .......... .......... .......... .......... 26% 19.8M 4s 11050K .......... .......... .......... .......... .......... 26% 79.2M 4s 11100K .......... .......... .......... .......... .......... 26% 87.1M 4s 11150K .......... .......... .......... .......... .......... 27% 9.40M 4s 11200K .......... .......... .......... .......... .......... 27% 22.7M 4s 11250K .......... .......... .......... .......... .......... 27% 71.8M 4s 11300K .......... .......... .......... .......... .......... 27% 73.6M 4s 11350K .......... .......... .......... .......... .......... 27% 17.3M 4s 11400K .......... .......... .......... .......... .......... 27% 30.5M 4s 11450K .......... .......... .......... .......... .......... 27% 78.5M 4s 11500K .......... .......... .......... .......... .......... 27% 19.1M 4s 11550K .......... .......... .......... .......... .......... 28% 58.7M 4s 11600K .......... .......... .......... .......... .......... 28% 79.6M 4s 11650K .......... .......... .......... .......... .......... 28% 19.4M 4s 11700K .......... .......... .......... .......... .......... 28% 74.1M 4s 11750K .......... .......... .......... .......... .......... 28% 2.59M 4s 11800K .......... .......... .......... .......... .......... 28% 65.7M 4s 11850K .......... .......... .......... .......... .......... 28% 24.3M 4s 11900K .......... .......... .......... .......... .......... 28% 33.1M 4s 11950K .......... .......... .......... .......... .......... 29% 21.7M 4s 12000K .......... .......... .......... .......... .......... 29% 77.5M 4s 12050K .......... .......... .......... .......... .......... 29% 32.7M 4s 12100K .......... .......... .......... .......... .......... 29% 81.8M 4s 12150K .......... .......... .......... .......... .......... 29% 24.9M 3s 12200K .......... .......... .......... .......... .......... 29% 59.8M 3s 12250K .......... .......... .......... .......... .......... 29% 74.7M 3s 12300K .......... .......... .......... .......... .......... 29% 6.15M 3s 12350K .......... .......... .......... .......... .......... 29% 25.6M 3s 12400K .......... .......... .......... .......... .......... 30% 4.73M 3s 12450K .......... .......... .......... .......... .......... 30% 66.6M 3s 12500K .......... .......... .......... .......... .......... 30% 78.3M 3s 12550K .......... .......... .......... .......... .......... 30% 64.8M 3s 12600K .......... .......... .......... .......... .......... 30% 80.2M 3s 12650K .......... .......... .......... .......... .......... 30% 75.4M 3s 12700K .......... .......... .......... .......... .......... 30% 80.3M 3s 12750K .......... .......... .......... .......... .......... 30% 62.3M 3s 12800K .......... .......... .......... .......... .......... 31% 2.65M 3s 12850K .......... .......... .......... .......... .......... 31% 65.7M 3s 12900K .......... .......... .......... .......... .......... 31% 45.2M 3s 12950K .......... .......... .......... .......... .......... 31% 64.3M 3s 13000K .......... .......... .......... .......... .......... 31% 76.4M 3s 13050K .......... .......... .......... .......... .......... 31% 6.61M 3s 13100K .......... .......... .......... .......... .......... 31% 75.7M 3s 13150K .......... .......... .......... .......... .......... 31% 39.8M 3s 13200K .......... .......... .......... .......... .......... 32% 76.2M 3s 13250K .......... .......... .......... .......... .......... 32% 79.8M 3s 13300K .......... .......... .......... .......... .......... 32% 18.1M 3s 13350K .......... .......... .......... .......... .......... 32% 80.7M 3s 13400K .......... .......... .......... .......... .......... 32% 72.3M 3s 13450K .......... .......... .......... .......... .......... 32% 2.41M 3s 13500K .......... .......... .......... .......... .......... 32% 66.6M 3s 13550K .......... .......... .......... .......... .......... 32% 61.7M 3s 13600K .......... .......... .......... .......... .......... 32% 79.9M 3s 13650K .......... .......... .......... .......... .......... 33% 75.8M 3s 13700K .......... .......... .......... .......... .......... 33% 27.2M 3s 13750K .......... .......... .......... .......... .......... 33% 82.0M 3s 13800K .......... .......... .......... .......... .......... 33% 38.2M 3s 13850K .......... .......... .......... .......... .......... 33% 75.9M 3s 13900K .......... .......... .......... .......... .......... 33% 78.5M 3s 13950K .......... .......... .......... .......... .......... 33% 49.2M 3s 14000K .......... .......... .......... .......... .......... 33% 87.6M 3s 14050K .......... .......... .......... .......... .......... 34% 58.8M 3s 14100K .......... .......... .......... .......... .......... 34% 75.1M 3s 14150K .......... .......... .......... .......... .......... 34% 86.7M 3s 14200K .......... .......... .......... .......... .......... 34% 54.6M 3s 14250K .......... .......... .......... .......... .......... 34% 74.0M 3s 14300K .......... .......... .......... .......... .......... 34% 86.7M 3s 14350K .......... .......... .......... .......... .......... 34% 3.51M 3s 14400K .......... .......... .......... .......... .......... 34% 73.8M 3s 14450K .......... .......... .......... .......... .......... 35% 28.5M 3s 14500K .......... .......... .......... .......... .......... 35% 85.8M 3s 14550K .......... .......... .......... .......... .......... 35% 81.5M 3s 14600K .......... .......... .......... 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89.5M 3s 15300K .......... .......... .......... .......... .......... 37% 58.7M 3s 15350K .......... .......... .......... .......... .......... 37% 1.99M 3s 15400K .......... .......... .......... .......... .......... 37% 106M 3s 15450K .......... .......... .......... .......... .......... 37% 109M 3s 15500K .......... .......... .......... .......... .......... 37% 101M 3s 15550K .......... .......... .......... .......... .......... 37% 77.3M 3s 15600K .......... .......... .......... .......... .......... 37% 110M 3s 15650K .......... .......... .......... .......... .......... 37% 106M 3s 15700K .......... .......... .......... .......... .......... 38% 109M 3s 15750K .......... .......... .......... .......... .......... 38% 99.4M 3s 15800K .......... .......... .......... .......... .......... 38% 106M 3s 15850K .......... .......... .......... .......... .......... 38% 106M 3s 15900K .......... .......... .......... .......... .......... 38% 110M 3s 15950K .......... .......... .......... .......... .......... 38% 83.5M 3s 16000K .......... .......... .......... .......... .......... 38% 112M 3s 16050K .......... .......... .......... .......... .......... 38% 112M 3s 16100K .......... .......... .......... .......... .......... 39% 110M 3s 16150K .......... .......... .......... .......... .......... 39% 113M 3s 16200K .......... .......... .......... .......... .......... 39% 105M 3s 16250K .......... .......... .......... .......... .......... 39% 109M 2s 16300K .......... .......... .......... .......... .......... 39% 106M 2s 16350K .......... .......... .......... .......... .......... 39% 76.3M 2s 16400K .......... .......... .......... .......... .......... 39% 102M 2s 16450K .......... .......... .......... .......... .......... 39% 105M 2s 16500K .......... .......... .......... .......... .......... 40% 103M 2s 16550K .......... .......... .......... .......... .......... 40% 106M 2s 16600K .......... .......... .......... .......... .......... 40% 99.9M 2s 16650K .......... .......... .......... .......... .......... 40% 104M 2s 16700K .......... .......... .......... .......... .......... 40% 105M 2s 16750K .......... .......... .......... .......... .......... 40% 4.56M 2s 16800K .......... .......... .......... .......... .......... 40% 90.9M 2s 16850K .......... .......... .......... .......... .......... 40% 71.1M 2s 16900K .......... .......... .......... .......... .......... 40% 26.9M 2s 16950K .......... .......... .......... .......... .......... 41% 67.5M 2s 17000K .......... .......... .......... .......... .......... 41% 49.1M 2s 17050K .......... .......... .......... .......... .......... 41% 70.9M 2s 17100K .......... .......... .......... .......... .......... 41% 64.0M 2s 17150K .......... .......... .......... .......... .......... 41% 15.4M 2s 17200K .......... .......... .......... .......... .......... 41% 74.9M 2s 17250K .......... .......... .......... .......... .......... 41% 51.4M 2s 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66.8M 2s 19300K .......... .......... .......... .......... .......... 46% 4.92M 2s 19350K .......... .......... .......... .......... .......... 46% 71.1M 2s 19400K .......... .......... .......... .......... .......... 47% 71.7M 2s 19450K .......... .......... .......... .......... .......... 47% 75.0M 2s 19500K .......... .......... .......... .......... .......... 47% 80.3M 2s 19550K .......... .......... .......... .......... .......... 47% 53.8M 2s 19600K .......... .......... .......... .......... .......... 47% 72.6M 2s 19650K .......... .......... .......... .......... .......... 47% 79.3M 2s 19700K .......... .......... .......... .......... .......... 47% 76.8M 2s 19750K .......... .......... .......... .......... .......... 47% 79.0M 2s 19800K .......... .......... .......... .......... .......... 47% 83.9M 2s 19850K .......... .......... .......... .......... .......... 48% 80.9M 2s 19900K .......... .......... .......... .......... .......... 48% 83.4M 2s 19950K 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.......... .......... .......... .......... 54% 82.9M 2s 22650K .......... .......... .......... .......... .......... 54% 55.5M 1s 22700K .......... .......... .......... .......... .......... 54% 46.7M 1s 22750K .......... .......... .......... .......... .......... 55% 2.43M 1s 22800K .......... .......... .......... .......... .......... 55% 68.7M 1s 22850K .......... .......... .......... .......... .......... 55% 78.1M 1s 22900K .......... .......... .......... .......... .......... 55% 2.39M 1s 22950K .......... .......... .......... .......... .......... 55% 79.4M 1s 23000K .......... .......... .......... .......... .......... 55% 83.0M 1s 23050K .......... .......... .......... .......... .......... 55% 30.4M 1s 23100K .......... .......... .......... .......... .......... 55% 80.1M 1s 23150K .......... .......... .......... .......... .......... 56% 1.35M 1s 23200K .......... .......... .......... .......... .......... 56% 73.9M 1s 23250K .......... .......... .......... 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64.8M 1s 23950K .......... .......... .......... .......... .......... 58% 61.0M 1s 24000K .......... .......... .......... .......... .......... 58% 80.0M 1s 24050K .......... .......... .......... .......... .......... 58% 12.1M 1s 24100K .......... .......... .......... .......... .......... 58% 73.5M 1s 24150K .......... .......... .......... .......... .......... 58% 67.6M 1s 24200K .......... .......... .......... .......... .......... 58% 80.2M 1s 24250K .......... .......... .......... .......... .......... 58% 79.8M 1s 24300K .......... .......... .......... .......... .......... 58% 3.44M 1s 24350K .......... .......... .......... .......... .......... 58% 39.4M 1s 24400K .......... .......... .......... .......... .......... 59% 74.0M 1s 24450K .......... .......... .......... .......... .......... 59% 81.6M 1s 24500K .......... .......... .......... .......... .......... 59% 82.9M 1s 24550K .......... .......... .......... .......... .......... 59% 73.0M 1s 24600K .......... .......... .......... .......... .......... 59% 78.1M 1s 24650K .......... .......... .......... .......... .......... 59% 82.5M 1s 24700K .......... .......... .......... .......... .......... 59% 74.9M 1s 24750K .......... .......... .......... .......... .......... 59% 55.9M 1s 24800K .......... .......... .......... .......... .......... 60% 82.5M 1s 24850K .......... .......... .......... .......... .......... 60% 79.3M 1s 24900K .......... .......... .......... .......... .......... 60% 80.9M 1s 24950K .......... .......... .......... .......... .......... 60% 65.1M 1s 25000K .......... .......... .......... .......... .......... 60% 64.3M 1s 25050K .......... .......... .......... .......... .......... 60% 76.5M 1s 25100K .......... .......... .......... .......... .......... 60% 59.4M 1s 25150K .......... .......... .......... .......... .......... 60% 47.1M 1s 25200K .......... .......... .......... .......... .......... 61% 71.0M 1s 25250K .......... .......... 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.......... 62% 82.2M 1s 25950K .......... .......... .......... .......... .......... 62% 21.0M 1s 26000K .......... .......... .......... .......... .......... 62% 70.1M 1s 26050K .......... .......... .......... .......... .......... 63% 81.0M 1s 26100K .......... .......... .......... .......... .......... 63% 3.64M 1s 26150K .......... .......... .......... .......... .......... 63% 74.2M 1s 26200K .......... .......... .......... .......... .......... 63% 77.6M 1s 26250K .......... .......... .......... .......... .......... 63% 8.70M 1s 26300K .......... .......... .......... .......... .......... 63% 78.0M 1s 26350K .......... .......... .......... .......... .......... 63% 52.7M 1s 26400K .......... .......... .......... .......... .......... 63% 80.4M 1s 26450K .......... .......... .......... .......... .......... 64% 80.9M 1s 26500K .......... .......... .......... .......... .......... 64% 9.33M 1s 26550K .......... .......... .......... .......... .......... 64% 71.9M 1s 26600K .......... .......... .......... .......... .......... 64% 74.1M 1s 26650K .......... .......... .......... .......... .......... 64% 76.8M 1s 26700K .......... .......... .......... .......... .......... 64% 72.6M 1s 26750K .......... .......... .......... .......... .......... 64% 18.6M 1s 26800K .......... .......... .......... .......... .......... 64% 77.9M 1s 26850K .......... .......... .......... .......... .......... 65% 4.29M 1s 26900K .......... .......... .......... .......... .......... 65% 65.4M 1s 26950K .......... .......... .......... .......... .......... 65% 72.7M 1s 27000K .......... .......... .......... .......... .......... 65% 46.1M 1s 27050K .......... .......... .......... .......... .......... 65% 56.0M 1s 27100K .......... .......... .......... .......... .......... 65% 81.5M 1s 27150K .......... .......... .......... .......... .......... 65% 22.3M 1s 27200K .......... .......... .......... .......... .......... 65% 76.9M 1s 27250K .......... 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3.22M 1s 28600K .......... .......... .......... .......... .......... 69% 77.0M 1s 28650K .......... .......... .......... .......... .......... 69% 16.8M 1s 28700K .......... .......... .......... .......... .......... 69% 1.73M 1s 28750K .......... .......... .......... .......... .......... 69% 58.3M 1s 28800K .......... .......... .......... .......... .......... 69% 12.1M 1s 28850K .......... .......... .......... .......... .......... 69% 74.0M 1s 28900K .......... .......... .......... .......... .......... 69% 70.0M 1s 28950K .......... .......... .......... .......... .......... 70% 87.3M 1s 29000K .......... .......... .......... .......... .......... 70% 86.4M 1s 29050K .......... .......... .......... .......... .......... 70% 2.40M 1s 29100K .......... .......... .......... .......... .......... 70% 68.1M 1s 29150K .......... .......... .......... .......... .......... 70% 67.4M 1s 29200K .......... .......... .......... .......... .......... 70% 4.25M 1s 29250K 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rmg-release_2.1/MG/CMakeLists.txt rmg-release_2.1/MG/find_grid_owner.c rmg-release_2.1/MG/CMakeFiles/ rmg-release_2.1/MG/CMakeFiles/CMakeDirectoryInformation.cmake rmg-release_2.1/MG/CMakeFiles/MG.dir/ rmg-release_2.1/MG/CMakeFiles/MG.dir/Mgrid_Cbindings.cpp.rpo rmg-release_2.1/MG/CMakeFiles/MG.dir/depend.make rmg-release_2.1/MG/CMakeFiles/MG.dir/build.make rmg-release_2.1/MG/CMakeFiles/MG.dir/flags.make rmg-release_2.1/MG/CMakeFiles/MG.dir/CXX.includecache rmg-release_2.1/MG/CMakeFiles/MG.dir/C.includecache rmg-release_2.1/MG/CMakeFiles/MG.dir/link.txt rmg-release_2.1/MG/CMakeFiles/MG.dir/cmake_clean_target.cmake rmg-release_2.1/MG/CMakeFiles/MG.dir/progress.make cd rmg-release_2.1 mkdir build-cpu; cd build-cpu cmake -DOPENBABEL_INCLUDES=$INSTDIR/openbabel-2.3.2/install/include/openbabel-2.0/openbabel -DOPENBABEL_LIBRARIES=$INSTDIR/openbabel-2.3.2/install/lib/libopenbabel.so.4.0.2 -DPLplot_INCLUDE_DIR=$INSTDIR/plplot.git/install/include 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/opt/cray/craype/2.5.4/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /opt/cray/craype/2.5.4/bin/cc -- Found MPI_CXX: /opt/cray/craype/2.5.4/bin/CC -- Found MPI_Fortran: /opt/cray/craype/2.5.4/bin/ftn -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Found PLPLOT: /var/lib/jenkins/rmg-spp/plplot.git/install/lib/libplplot.so -- Performing Test USE_PLPLOT_LIBS_INTERNAL -- Performing Test USE_PLPLOT_LIBS_INTERNAL - Failed -- Boost version: 1.53.0 -- Found the following Boost libraries: -- thread -- system -- iostreams -- program_options -- filesystem -- Found BZ2: /usr/lib64/libbz2.so -- Found Z: /usr/lib64/libz.so -- Performing Test CHECK_OPENBABEL_INTERNAL1 -- Performing Test CHECK_OPENBABEL_INTERNAL1 - Failed -- Performing 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pfft-master/build-aux/config.guess pfft-master/build-aux/ltmain.sh pfft-master/build-aux/fortran-rules.am pfft-master/build-aux/config.sub pfft-master/build-aux/get_autotools.sh pfft-master/build-aux/install-sh pfft-master/Makefile.in pfft-master/config.h.in pfft-master/COPYING pfft-master/bootstrap.sh pfft-master/TODO pfft-master/doc/ pfft-master/doc/tutorial.tex pfft-master/doc/code/ pfft-master/doc/code/manual_min_c2c.c pfft-master/doc/install.tex pfft-master/doc/.gitignore pfft-master/doc/reference.dvi pfft-master/doc/Makefile.am pfft-master/doc/intro.tex pfft-master/doc/shortcuts.tex pfft-master/doc/manual.tex pfft-master/doc/reference.log pfft-master/doc/Makefile.in pfft-master/doc/fortran.tex pfft-master/doc/latexinc.sh.in pfft-master/doc/interface.tex pfft-master/doc/develop.tex pfft-master/doc/bibliography.bib pfft-master/doc/features.tex pfft-master/doc/latex-manual.sh pfft-master/doc/reference.tex pfft-master/util/ pfft-master/util/Makefile.am pfft-master/util/getargs.c pfft-master/util/util.h pfft-master/util/Makefile.in pfft-master/util/util.c pfft-master/fconfig.h.in pfft-master/scripts/ pfft-master/scripts/install_pfft_intel_debug.sh pfft-master/scripts/build_release_gcc.sh pfft-master/scripts/install_pfft_chic.sh pfft-master/scripts/install_pfft_gcc.sh pfft-master/scripts/install_pfft_gcc_debug.sh pfft-master/scripts/install_pfft_bgp_debug.sh pfft-master/scripts/install_pfft_chic_debug.sh pfft-master/scripts/make_release_gcc.sh pfft-master/scripts/install_pfft_bgq.sh pfft-master/scripts/install_pfft_bgq_debug.sh pfft-master/scripts/install_pfft_intel.sh pfft-master/scripts/install_pfft_bgp.sh pfft-master/gcell/ pfft-master/gcell/gctimer.c pfft-master/gcell/gcells_RMA.c pfft-master/gcell/Makefile.am pfft-master/gcell/gcells_sendrecv.c pfft-master/gcell/gcells_plan.c pfft-master/gcell/Makefile.in pfft-master/AUTHORS pfft-master/NEWS pfft-master/aclocal.m4 pfft-master/.travis.yml pfft-master/conf/ pfft-master/conf/travis-install-fftw.sh pfft-master/conf/travis-install-mpi.sh pfft-master/conf/.travis-install-mpi.sh.swp pfft-master/INSTALL pfft-master/configure pfft-master/api/ pfft-master/api/api-basic.c pfft-master/api/pfft.h pfft-master/api/pfft.f03.in pfft-master/api/pfftl.f03.in pfft-master/api/Makefile.am pfft-master/api/genf03-wrap.pl pfft-master/api/fortran-api.c pfft-master/api/Makefile.in pfft-master/api/fortran-mangling.h pfft-master/api/fortran-prototypes.h pfft-master/api/f03-wrap.sh pfft-master/api/build-f03-api.sh pfft-master/api/f03-api.sh pfft-master/api/f03-wrap.c pfft-master/api/fortran-wrappers.h pfft-master/api/pfft.f.in pfft-master/api/genf03-api.pl pfft-master/api/api-adv.c pfft-master/autom4te.cache/ pfft-master/autom4te.cache/output.1 pfft-master/autom4te.cache/traces.0 pfft-master/autom4te.cache/output.0 pfft-master/autom4te.cache/traces.1 pfft-master/autom4te.cache/requests pfft-master/ChangeLog configure: **************************************************************** configure: * Configuring in common/pfft * configure: **************************************************************** checking build system type... x86_64-suse-linux-gnu checking host system type... x86_64-pc-none checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-strip... no checking for strip... strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for x86_64-mpicc... /opt/cray/craype/2.5.4/bin/cc checking for x86_64-gcc... (cached) /opt/cray/craype/2.5.4/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/cray/craype/2.5.4/bin/cc accepts -g... yes checking for /opt/cray/craype/2.5.4/bin/cc option to accept ISO C89... none needed checking dependency style of /opt/cray/craype/2.5.4/bin/cc... gcc3 checking for function MPI_Init... yes checking for mpi.h... yes checking for /opt/cray/craype/2.5.4/bin/cc option to accept ISO C99... -std=gnu99 checking for inline... inline checking for x86_64-mpif95... /opt/cray/craype/2.5.4/bin/ftn checking for x86_64-gfortran... (cached) /opt/cray/craype/2.5.4/bin/ftn checking whether we are using the GNU Fortran compiler... yes checking whether /opt/cray/craype/2.5.4/bin/ftn accepts -g... yes checking for function MPI_INIT... yes checking for mpif.h... yes checking how to get verbose linking output from /opt/cray/craype/2.5.4/bin/ftn... -v checking for Fortran libraries of /opt/cray/craype/2.5.4/bin/ftn... -L/opt/cray/fftw/3.3.4.10/interlagos/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib -L/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib -L/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib -L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L/opt/cray/atp/2.0.1/libApp -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lfmpich -lmpichcxx -ldarshan-mpi-io -ldarshan-posix -ldarshan-stubs -lz -lrt -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lmpich_gnu_49 -lmpichf90_gnu_49 -lsci_gnu_49_mpi -lsci_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for alternate main to link with Fortran libraries... main checking for Fortran flag needed to accept 132 column source lines... -ffixed-line-length-none checking how to get verbose linking output from /opt/cray/craype/2.5.4/bin/ftn... (cached) -v checking for Fortran libraries of /opt/cray/craype/2.5.4/bin/ftn... (cached) -L/opt/cray/fftw/3.3.4.10/interlagos/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib -L/opt/cray/libsci/16.03.1/GNU/4.9/x86_64/lib -L/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/lib -L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L/opt/cray/atp/2.0.1/libApp -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lfmpich -lmpichcxx -ldarshan-mpi-io -ldarshan-posix -ldarshan-stubs -lz -lrt -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lmpich_gnu_49 -lmpichf90_gnu_49 -lsci_gnu_49_mpi -lsci_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... none checking how to define symbols for preprocessed Fortran... -D checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... mod checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /opt/cray/craype/2.5.4/bin/cc -std=gnu99... /opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld checking if the linker (/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... no checking for x86_64-dumpbin... no checking for x86_64-link... no checking for dumpbin... no checking for link... link -dump checking the name lister (nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-suse-linux-gnu file names to x86_64-pc-none format... func_convert_file_noop checking how to convert x86_64-suse-linux-gnu file names to toolchain format... func_convert_file_noop checking for /opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for x86_64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-strip... strip checking for x86_64-ranlib... no checking for ranlib... ranlib checking command to parse nm output from /opt/cray/craype/2.5.4/bin/cc -std=gnu99 object... ok checking for sysroot... no checking for x86_64-mt... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /opt/cray/craype/2.5.4/bin/cc -std=gnu99 supports -fno-rtti -fno-exceptions... no checking for /opt/cray/craype/2.5.4/bin/cc -std=gnu99 option to produce PIC... -fPIC -DPIC checking if /opt/cray/craype/2.5.4/bin/cc -std=gnu99 PIC flag -fPIC -DPIC works... yes checking if /opt/cray/craype/2.5.4/bin/cc -std=gnu99 static flag -static works... yes checking if /opt/cray/craype/2.5.4/bin/cc -std=gnu99 supports -c -o file.o... yes checking if /opt/cray/craype/2.5.4/bin/cc -std=gnu99 supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.4/bin/cc -std=gnu99 linker (/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /opt/cray/craype/2.5.4/bin/ftn option to produce PIC... -fPIC checking if /opt/cray/craype/2.5.4/bin/ftn PIC flag -fPIC works... yes checking if /opt/cray/craype/2.5.4/bin/ftn static flag -static works... yes checking if /opt/cray/craype/2.5.4/bin/ftn supports -c -o file.o... yes checking if /opt/cray/craype/2.5.4/bin/ftn supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.4/bin/ftn linker (/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking for sincos in -lm... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking fftw3-mpi.h usability... yes checking fftw3-mpi.h presence... yes checking for fftw3-mpi.h... yes checking for fftw_execute in -lfftw3... yes checking for fftw_init_threads in -lfftw3_threads... yes checking for fftw_init_threads in -lfftw3_omp... no checking for fftw_mpi_init in -lfftw3_mpi... yes checking for C compiler vendor... gnu checking whether C compiler accepts -malign-double... yes checking whether C compiler accepts -fstrict-aliasing... yes checking whether C compiler accepts -ffast-math... yes checking for gcc architecture flag... checking for x86 cpuid 0 output... unknown checking for x86 cpuid 1 output... unknown checking whether C compiler accepts -march=native... yes checking for gcc architecture flag... -march=native checking whether C compiler accepts -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native... yes checking for ptrdiff_t... yes checking for long double... yes checking size of ptrdiff_t... 8 checking size of MPI_Fint... 4 checking for library containing log... none required checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for bibtex... /usr/bin/bibtex checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doc/latexinc.sh config.status: creating Makefile config.status: creating pfft.pc config.status: creating api/pfft.f config.status: creating api/pfft.f03 config.status: creating api/pfftl.f03 config.status: creating kernel/Makefile config.status: creating util/Makefile config.status: creating api/Makefile config.status: creating gcell/Makefile config.status: creating tests/Makefile config.status: creating tests/fortran/Makefile config.status: creating tests/f03/Makefile config.status: creating tests/openmp/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: creating fconfig.h config.status: linking /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/doc/latex-manual.sh to doc/latex-manual.sh config.status: linking /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/tests/build_checks.sh to tests/build_checks.sh config.status: linking /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/tests/run_checks.sh to tests/run_checks.sh config.status: linking /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/tests/manual_c2c_3d.c to tests/manual_c2c_3d.c config.status: executing depfiles commands config.status: executing libtool commands make: *** No targets specified and no makefile found. Stop. Making install in kernel make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/kernel' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT block.lo -MD -MP -MF .deps/block.Tpo -c -o block.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel/block.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT block.lo -MD -MP -MF .deps/block.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel/block.c -o block.o mv -f .deps/block.Tpo .deps/block.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I.. 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-I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT transpose.lo -MD -MP -MF .deps/transpose.Tpo -c -o transpose.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel/transpose.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT transpose.lo -MD -MP -MF .deps/transpose.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel/transpose.c -o transpose.o mv -f .deps/transpose.Tpo .deps/transpose.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libkernel.la block.lo check.lo malloc.lo ousample.lo outrafo.lo partrafo-transposed.lo partrafo.lo sertrafo.lo procmesh.lo remap_3dto2d.lo timer.lo transpose.lo -lm libtool: link: ar cru .libs/libkernel.a block.o check.o malloc.o ousample.o outrafo.o partrafo-transposed.o partrafo.o sertrafo.o procmesh.o remap_3dto2d.o timer.o transpose.o libtool: link: ranlib .libs/libkernel.a libtool: link: ( cd ".libs" && rm -f "libkernel.la" && ln -s "../libkernel.la" "libkernel.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/kernel' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/kernel' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/kernel' Making install in gcell make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/gcell' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_plan.lo -MD -MP -MF .deps/gcells_plan.Tpo -c -o gcells_plan.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_plan.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_plan.lo -MD -MP -MF .deps/gcells_plan.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_plan.c -o gcells_plan.o mv -f .deps/gcells_plan.Tpo .deps/gcells_plan.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_RMA.lo -MD -MP -MF .deps/gcells_RMA.Tpo -c -o gcells_RMA.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_RMA.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_RMA.lo -MD -MP -MF .deps/gcells_RMA.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_RMA.c -o gcells_RMA.o mv -f .deps/gcells_RMA.Tpo .deps/gcells_RMA.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_sendrecv.lo -MD -MP -MF .deps/gcells_sendrecv.Tpo -c -o gcells_sendrecv.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_sendrecv.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_sendrecv.lo -MD -MP -MF .deps/gcells_sendrecv.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gcells_sendrecv.c -o gcells_sendrecv.o mv -f .deps/gcells_sendrecv.Tpo .deps/gcells_sendrecv.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gctimer.lo -MD -MP -MF .deps/gctimer.Tpo -c -o gctimer.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gctimer.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gctimer.lo -MD -MP -MF .deps/gctimer.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/gcell/gctimer.c -o gctimer.o mv -f .deps/gctimer.Tpo .deps/gctimer.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libgcell.la gcells_plan.lo gcells_RMA.lo gcells_sendrecv.lo gctimer.lo -lm libtool: link: ar cru .libs/libgcell.a gcells_plan.o gcells_RMA.o gcells_sendrecv.o gctimer.o libtool: link: ranlib .libs/libgcell.a libtool: link: ( cd ".libs" && rm -f "libgcell.la" && ln -s "../libgcell.la" "libgcell.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/gcell' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/gcell' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/gcell' Making install in util make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/util' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util/util.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT util.lo -MD -MP -MF .deps/util.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util/util.c -o util.o mv -f .deps/util.Tpo .deps/util.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT getargs.lo -MD -MP -MF .deps/getargs.Tpo -c -o getargs.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util/getargs.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT getargs.lo -MD -MP -MF .deps/getargs.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util/getargs.c -o getargs.o mv -f .deps/getargs.Tpo .deps/getargs.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libutil.la util.lo getargs.lo -lm libtool: link: ar cru .libs/libutil.a util.o getargs.o libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/util' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/util' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/util' Making install in api make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/api' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-basic.lo -MD -MP -MF .deps/api-basic.Tpo -c -o api-basic.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/api-basic.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-basic.lo -MD -MP -MF .deps/api-basic.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/api-basic.c -o api-basic.o mv -f .deps/api-basic.Tpo .deps/api-basic.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-adv.lo -MD -MP -MF .deps/api-adv.Tpo -c -o api-adv.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/api-adv.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-adv.lo -MD -MP -MF .deps/api-adv.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/api-adv.c -o api-adv.o mv -f .deps/api-adv.Tpo .deps/api-adv.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT fortran-api.lo -MD -MP -MF .deps/fortran-api.Tpo -c -o fortran-api.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/fortran-api.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT fortran-api.lo -MD -MP -MF .deps/fortran-api.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/fortran-api.c -o fortran-api.o mv -f .deps/fortran-api.Tpo .deps/fortran-api.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT f03-wrap.lo -MD -MP -MF .deps/f03-wrap.Tpo -c -o f03-wrap.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/f03-wrap.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/kernel -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT f03-wrap.lo -MD -MP -MF .deps/f03-wrap.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/f03-wrap.c -o f03-wrap.o mv -f .deps/f03-wrap.Tpo .deps/f03-wrap.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libapi.la api-basic.lo api-adv.lo fortran-api.lo f03-wrap.lo -lm libtool: link: ar cru .libs/libapi.a api-basic.o api-adv.o fortran-api.o f03-wrap.o libtool: link: ranlib .libs/libapi.a libtool: link: ( cd ".libs" && rm -f "libapi.la" && ln -s "../libapi.la" "libapi.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/api' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/include' /usr/bin/install -c -m 644 /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/api/pfft.h '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/include' /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/include' /usr/bin/install -c -m 644 pfft.f pfft.f03 pfftl.f03 '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/include' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/api' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/api' Making install in . make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64' /bin/sh ./libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -no-undefined -version-info 0:0:0 -o libpfft.la -rpath /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib kernel/libkernel.la util/libutil.la api/libapi.la gcell/libgcell.la -lm libtool: link: (cd .libs/libpfft.lax/libkernel.a && ar x "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/kernel/.libs/libkernel.a") libtool: link: (cd .libs/libpfft.lax/libutil.a && ar x "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/util/.libs/libutil.a") libtool: link: (cd .libs/libpfft.lax/libapi.a && ar x "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/api/.libs/libapi.a") libtool: link: (cd .libs/libpfft.lax/libgcell.a && ar x "/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/gcell/.libs/libgcell.a") libtool: link: ar cru .libs/libpfft.a .libs/libpfft.lax/libkernel.a/block.o .libs/libpfft.lax/libkernel.a/check.o .libs/libpfft.lax/libkernel.a/malloc.o .libs/libpfft.lax/libkernel.a/ousample.o .libs/libpfft.lax/libkernel.a/outrafo.o .libs/libpfft.lax/libkernel.a/partrafo-transposed.o .libs/libpfft.lax/libkernel.a/partrafo.o .libs/libpfft.lax/libkernel.a/procmesh.o .libs/libpfft.lax/libkernel.a/remap_3dto2d.o .libs/libpfft.lax/libkernel.a/sertrafo.o .libs/libpfft.lax/libkernel.a/timer.o .libs/libpfft.lax/libkernel.a/transpose.o .libs/libpfft.lax/libutil.a/getargs.o .libs/libpfft.lax/libutil.a/util.o .libs/libpfft.lax/libapi.a/api-adv.o .libs/libpfft.lax/libapi.a/api-basic.o .libs/libpfft.lax/libapi.a/f03-wrap.o .libs/libpfft.lax/libapi.a/fortran-api.o .libs/libpfft.lax/libgcell.a/gcells_RMA.o .libs/libpfft.lax/libgcell.a/gcells_plan.o .libs/libpfft.lax/libgcell.a/gcells_sendrecv.o .libs/libpfft.lax/libgcell.a/gctimer.o libtool: link: ranlib .libs/libpfft.a libtool: link: rm -fr .libs/libpfft.lax libtool: link: ( cd ".libs" && rm -f "libpfft.la" && ln -s "../libpfft.la" "libpfft.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64' /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libpfft.la '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib' libtool: install: /usr/bin/install -c .libs/libpfft.lai /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.la libtool: install: /usr/bin/install -c .libs/libpfft.a /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a libtool: install: chmod 644 /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a libtool: install: ranlib /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64' Making install in tests make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' Making install in fortran make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' Making install in f03 make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/tests' Making install in doc make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/doc' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/doc' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/doc' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/doc' -- Found PFFT: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a -- Could NOT find LIBXC (missing: LIBXC_LIBRARIES LIBXC_INCLUDES) libxc-2.2.2/ libxc-2.2.2/COPYING libxc-2.2.2/ChangeLog libxc-2.2.2/build/ libxc-2.2.2/build/libxc.pc.in libxc-2.2.2/build/Makefile.in libxc-2.2.2/build/libxc.spec.in libxc-2.2.2/build/Makefile.am libxc-2.2.2/config.h.in libxc-2.2.2/m4/ libxc-2.2.2/m4/libtool.m4 libxc-2.2.2/m4/fortran.m4 libxc-2.2.2/m4/ac_prog_sed.m4 libxc-2.2.2/m4/lt~obsolete.m4 libxc-2.2.2/m4/ltsugar.m4 libxc-2.2.2/m4/fc_integer.m4 libxc-2.2.2/m4/ltoptions.m4 libxc-2.2.2/m4/ltversion.m4 libxc-2.2.2/m4/ax_f90_module_extension.m4 libxc-2.2.2/m4/fcflags.m4 libxc-2.2.2/missing libxc-2.2.2/aclocal.m4 libxc-2.2.2/xc_version.h libxc-2.2.2/NEWS libxc-2.2.2/AUTHORS libxc-2.2.2/config.sub libxc-2.2.2/configure.ac libxc-2.2.2/Makefile.in libxc-2.2.2/src/ libxc-2.2.2/src/mgga_x_mn12.c libxc-2.2.2/src/gga_xc_oblyp_d.c libxc-2.2.2/src/mgga_xc_otpss_d.c libxc-2.2.2/src/gga_x_htbs.c libxc-2.2.2/src/gga_x_wpbeh.c libxc-2.2.2/src/lda_c_rc04.c libxc-2.2.2/src/libxc_master.F90 libxc-2.2.2/src/gga_x_q2d.c libxc-2.2.2/src/gga_x_sogga11.c libxc-2.2.2/src/gga_c_tca.c libxc-2.2.2/src/gga_x_rpbe.c libxc-2.2.2/src/mgga_x_tpss.c libxc-2.2.2/src/hyb_gga_xc_hse.c libxc-2.2.2/src/mgga_c_cs.c libxc-2.2.2/src/lda_c_pz.c libxc-2.2.2/src/gga.c libxc-2.2.2/src/mgga_x_tau_hcth.c libxc-2.2.2/src/string_f.h libxc-2.2.2/src/lda_c_2d_prm.c libxc-2.2.2/src/gga_c_q2d.c libxc-2.2.2/src/mgga_x_br89.c libxc-2.2.2/src/lda_c_pw.c libxc-2.2.2/src/gga_x_pw91.c libxc-2.2.2/src/gga_x_hjs.c libxc-2.2.2/src/mgga_c_pkzb.c libxc-2.2.2/src/lda_c_wigner.c libxc-2.2.2/src/gga_k_ol2.c libxc-2.2.2/src/hyb_gga_xc_b97.c libxc-2.2.2/src/mgga_x_m05.c libxc-2.2.2/src/hyb_mgga_xc_tpssh.c libxc-2.2.2/src/mgga_x_pkzb.c libxc-2.2.2/src/mgga_x_m08.c libxc-2.2.2/src/work_gga_x.c libxc-2.2.2/src/gga_x_ak13.c libxc-2.2.2/src/bessel.c libxc-2.2.2/src/gga_xc_1w.c libxc-2.2.2/src/hyb_gga_xc_b1wc.c libxc-2.2.2/src/gga_x_lb.c libxc-2.2.2/src/gga_c_wl.c libxc-2.2.2/src/util.h libxc-2.2.2/src/gga_c_ft97.c libxc-2.2.2/src/lda_c_hl.c libxc-2.2.2/src/xc_f.c libxc-2.2.2/src/gga_x_g96.c libxc-2.2.2/src/mgga_x_m06l.c libxc-2.2.2/src/lda_c_gombas.c libxc-2.2.2/src/gga_c_p86.c libxc-2.2.2/src/gga_c_optc.c libxc-2.2.2/src/gga_x_herman.c libxc-2.2.2/src/gga_x_bayesian.c libxc-2.2.2/src/gga_k_tflw.c libxc-2.2.2/src/xc_config.h libxc-2.2.2/src/gga_x_pbea.c libxc-2.2.2/src/gga_xc_edf1.c libxc-2.2.2/src/gga_x_pbe.c libxc-2.2.2/src/mgga_x_gvt4.c libxc-2.2.2/src/gga_x_optx.c libxc-2.2.2/src/lda_c_ml1.c libxc-2.2.2/src/gga_x_pw86.c libxc-2.2.2/src/gga_c_wi.c libxc-2.2.2/src/util.c libxc-2.2.2/src/gga_x_wc.c libxc-2.2.2/src/lda.c libxc-2.2.2/src/gga_x_2d_b86.c libxc-2.2.2/src/mgga_c_m08.c libxc-2.2.2/src/gga_x_sfat.c libxc-2.2.2/src/gga_k_pearson.c libxc-2.2.2/src/lda_c_rpa.c libxc-2.2.2/src/lda_x_2d.c libxc-2.2.2/src/Makefile.in libxc-2.2.2/src/stoll.c libxc-2.2.2/src/gga_x_2d_pbe.c libxc-2.2.2/src/hyb_gga_xc_cam_b3lyp.c libxc-2.2.2/src/gga_c_op.c libxc-2.2.2/src/lda_c_1d_csc.c libxc-2.2.2/src/mgga_x_lta.c libxc-2.2.2/src/gga_k_meyer.c libxc-2.2.2/src/gga_x_vmt.c libxc-2.2.2/src/mgga_c_cc06.c libxc-2.2.2/src/gga_x_ssb_sw.c libxc-2.2.2/src/gga_x_am05.c libxc-2.2.2/src/xc_unconfig.h libxc-2.2.2/src/gga_x_2d_b88.c libxc-2.2.2/src/work_mgga_c.c libxc-2.2.2/src/special_functions.c libxc-2.2.2/src/lda_x_1d.c libxc-2.2.2/src/gga_x_airy.c libxc-2.2.2/src/mgga_x_2d_prhg07.c libxc-2.2.2/src/hyb_gga_xc_camy_blyp.c libxc-2.2.2/src/gga_x_kt.c libxc-2.2.2/src/gga_x_lg93.c libxc-2.2.2/src/version.c libxc-2.2.2/src/gga_x_c09x.c libxc-2.2.2/src/gga_x_b88.c libxc-2.2.2/src/gga_x_bpccac.c libxc-2.2.2/src/hyb_mgga_xc_m05.c libxc-2.2.2/src/gga_c_lm.c libxc-2.2.2/src/gga_x_n12.c libxc-2.2.2/src/gga_c_pw91.c libxc-2.2.2/src/work_lda.c libxc-2.2.2/src/gga_x_dk87.c libxc-2.2.2/src/work_mgga_x.c libxc-2.2.2/src/gga_xc_b97.c libxc-2.2.2/src/gga_xc_th.c libxc-2.2.2/src/mgga.c libxc-2.2.2/src/gga_x_mpbe.c libxc-2.2.2/src/lda_c_2d_amgb.c libxc-2.2.2/src/xc_s.h libxc-2.2.2/src/gga_x_ityh.c libxc-2.2.2/src/work_gga_c.c libxc-2.2.2/src/xc.h libxc-2.2.2/src/gga_x_2d_b86_mgc.c libxc-2.2.2/src/hyb_gga_xc_o3lyp.c libxc-2.2.2/src/functionals.c libxc-2.2.2/src/gga_x_ft97.c libxc-2.2.2/src/get_funcs.pl libxc-2.2.2/src/lda_xc_teter93.c libxc-2.2.2/src/xc-info.c libxc-2.2.2/src/gga_k_ol1.c libxc-2.2.2/src/gga_x_b86.c libxc-2.2.2/src/gga_x_b86_mgc.c libxc-2.2.2/src/lda_c_vwn.c libxc-2.2.2/src/gga_c_lyp.c libxc-2.2.2/src/mgga_c_vsxc.c libxc-2.2.2/src/lda_k_tf.c libxc-2.2.2/src/expint_e1.c libxc-2.2.2/src/integrate.c libxc-2.2.2/src/gga_c_am05.c libxc-2.2.2/src/gga_k_dk.c libxc-2.2.2/src/mgga_x_mk00.c libxc-2.2.2/src/mgga_x_ms.c libxc-2.2.2/src/hyb_gga_xc_pbeh.c libxc-2.2.2/src/mgga_c_bc95.c libxc-2.2.2/src/hyb_gga_xc_b3lyp.c libxc-2.2.2/src/lda_c_1d_loos.c libxc-2.2.2/src/mix_func.c libxc-2.2.2/src/gga_c_pbe.c libxc-2.2.2/src/Makefile.am libxc-2.2.2/src/gga_c_sogga11.c libxc-2.2.2/src/gga_x_lv_rpw86.c libxc-2.2.2/src/lda_x.c libxc-2.2.2/config.guess libxc-2.2.2/install-sh libxc-2.2.2/depcomp libxc-2.2.2/compile libxc-2.2.2/ltmain.sh libxc-2.2.2/PACKAGING libxc-2.2.2/TODO libxc-2.2.2/README libxc-2.2.2/xc_version.h.in libxc-2.2.2/configure libxc-2.2.2/testsuite/ libxc-2.2.2/testsuite/xc-consistency.c libxc-2.2.2/testsuite/xc-reference.pl libxc-2.2.2/testsuite/xc-run_testsuite libxc-2.2.2/testsuite/Makefile.in libxc-2.2.2/testsuite/xc-error.c libxc-2.2.2/testsuite/df_repo/ libxc-2.2.2/testsuite/df_repo/gga_xc_b97_1.data libxc-2.2.2/testsuite/df_repo/gga_c_pbe.data libxc-2.2.2/testsuite/df_repo/gga_c_lyp.data 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libxc-2.2.2/testsuite/input/BrOH+ libxc-2.2.2/testsuite/input/Li libxc-2.2.2/testsuite/input/BrOH libxc-2.2.2/testsuite/input/README libxc-2.2.2/testsuite/xc-regression.c libxc-2.2.2/testsuite/regression/ libxc-2.2.2/testsuite/regression/lda_x.unpol.bz2 libxc-2.2.2/testsuite/regression/lda_x.pol.bz2 libxc-2.2.2/testsuite/Makefile.am libxc-2.2.2/INSTALL libxc-2.2.2/test-driver libxc-2.2.2/Makefile.am checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for a sed that does not truncate output... /usr/bin/sed checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for style of include used by make... 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-L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lfmpich -lmpichcxx -ldarshan-mpi-io -ldarshan-posix -ldarshan-stubs -lz -lrt -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lmpich_gnu_49 -lmpichf90_gnu_49 -lsci_gnu_49_mpi -lsci_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether the compiler accepts very long lines... no checking whether the compiler accepts "line-number" lines cast by the preprocessor... yes checking fortran 90 modules extension... mod checking for the size of a Fortran integer... 4 bytes checking for which C type corresponds to Fortran integer... int checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating xc_version.h config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating build/Makefile config.status: creating build/libxc.pc config.status: creating build/libxc.spec config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Making install in build make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/pkgconfig' /usr/bin/install -c -m 644 libxc.pc '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/pkgconfig' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' Making install in src make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/get_funcs.pl /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src .. make install-am make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT 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-DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_bc95.lo -MD -MP -MF .deps/mgga_c_bc95.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_bc95.c -o mgga_c_bc95.o mv -f .deps/mgga_c_bc95.Tpo .deps/mgga_c_bc95.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_m08.lo -MD -MP -MF .deps/mgga_c_m08.Tpo -c -o mgga_c_m08.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_m08.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_m08.lo -MD -MP -MF .deps/mgga_c_m08.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_m08.c -o mgga_c_m08.o mv -f .deps/mgga_c_m08.Tpo .deps/mgga_c_m08.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_cc06.lo -MD -MP -MF .deps/mgga_c_cc06.Tpo -c -o mgga_c_cc06.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_cc06.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_cc06.lo -MD -MP -MF .deps/mgga_c_cc06.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_cc06.c -o mgga_c_cc06.o mv -f .deps/mgga_c_cc06.Tpo .deps/mgga_c_cc06.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_cs.lo -MD -MP -MF .deps/mgga_c_cs.Tpo -c -o mgga_c_cs.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_cs.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_c_cs.lo -MD -MP -MF .deps/mgga_c_cs.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_c_cs.c -o mgga_c_cs.o mv -f .deps/mgga_c_cs.Tpo .deps/mgga_c_cs.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_xc_otpss_d.lo -MD -MP -MF .deps/mgga_xc_otpss_d.Tpo -c -o mgga_xc_otpss_d.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_xc_otpss_d.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_xc_otpss_d.lo -MD -MP -MF .deps/mgga_xc_otpss_d.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_xc_otpss_d.c -o mgga_xc_otpss_d.o mv -f .deps/mgga_xc_otpss_d.Tpo .deps/mgga_xc_otpss_d.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_m05.lo -MD -MP -MF .deps/hyb_mgga_xc_m05.Tpo -c -o hyb_mgga_xc_m05.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_m05.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_m05.lo -MD -MP -MF .deps/hyb_mgga_xc_m05.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_m05.c -o hyb_mgga_xc_m05.o mv -f .deps/hyb_mgga_xc_m05.Tpo .deps/hyb_mgga_xc_m05.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_tpssh.lo -MD -MP -MF .deps/hyb_mgga_xc_tpssh.Tpo -c -o hyb_mgga_xc_tpssh.lo /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_tpssh.c libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_tpssh.lo -MD -MP -MF .deps/hyb_mgga_xc_tpssh.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_tpssh.c -o hyb_mgga_xc_tpssh.o mv -f .deps/hyb_mgga_xc_tpssh.Tpo .deps/hyb_mgga_xc_tpssh.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -version-info 3:2:0 -o libxc.la -rpath /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib special_functions.lo bessel.lo expint_e1.lo integrate.lo util.lo mix_func.lo functionals.lo version.lo lda.lo lda_x.lo lda_x_1d.lo lda_x_2d.lo lda_c_wigner.lo lda_c_gombas.lo lda_c_rpa.lo lda_c_hl.lo lda_c_vwn.lo lda_c_pz.lo lda_c_pw.lo lda_c_ml1.lo lda_c_rc04.lo lda_xc_teter93.lo lda_c_1d_csc.lo lda_c_1d_loos.lo lda_c_2d_amgb.lo lda_c_2d_prm.lo stoll.lo lda_k_tf.lo gga.lo gga_x_lg93.lo gga_x_pbe.lo gga_x_rpbe.lo gga_x_pbea.lo gga_x_mpbe.lo gga_x_herman.lo gga_x_b86.lo gga_x_b86_mgc.lo gga_x_b88.lo gga_x_g96.lo gga_x_pw86.lo gga_x_pw91.lo gga_x_optx.lo gga_x_airy.lo gga_x_c09x.lo gga_x_dk87.lo gga_x_ft97.lo gga_x_wc.lo gga_x_am05.lo gga_x_bayesian.lo gga_x_kt.lo gga_x_htbs.lo gga_c_pbe.lo gga_c_lyp.lo gga_c_p86.lo gga_c_pw91.lo gga_c_am05.lo gga_c_lm.lo gga_c_wl.lo gga_c_wi.lo gga_x_lb.lo gga_xc_b97.lo gga_xc_edf1.lo gga_xc_1w.lo gga_c_optc.lo gga_c_tca.lo gga_x_bpccac.lo gga_x_sogga11.lo gga_c_sogga11.lo gga_xc_th.lo gga_x_wpbeh.lo gga_x_hjs.lo gga_x_ityh.lo gga_x_sfat.lo gga_x_ak13.lo gga_x_q2d.lo gga_c_q2d.lo gga_x_ssb_sw.lo gga_c_ft97.lo gga_c_op.lo gga_x_n12.lo gga_x_lv_rpw86.lo gga_x_2d_b86.lo gga_x_2d_b86_mgc.lo gga_x_2d_b88.lo gga_x_2d_pbe.lo gga_k_tflw.lo gga_k_pearson.lo gga_k_ol1.lo gga_k_ol2.lo gga_k_dk.lo gga_k_meyer.lo gga_x_vmt.lo gga_xc_oblyp_d.lo hyb_gga_xc_b3lyp.lo hyb_gga_xc_o3lyp.lo hyb_gga_xc_pbeh.lo hyb_gga_xc_b1wc.lo hyb_gga_xc_b97.lo hyb_gga_xc_hse.lo hyb_gga_xc_cam_b3lyp.lo hyb_gga_xc_camy_blyp.lo mgga.lo mgga_x_lta.lo mgga_x_tpss.lo mgga_x_br89.lo mgga_x_gvt4.lo mgga_x_m06l.lo mgga_x_tau_hcth.lo mgga_x_2d_prhg07.lo mgga_x_pkzb.lo mgga_x_m05.lo mgga_x_m08.lo mgga_x_ms.lo mgga_x_mn12.lo mgga_x_mk00.lo mgga_c_vsxc.lo mgga_c_pkzb.lo mgga_c_bc95.lo mgga_c_m08.lo mgga_c_cc06.lo mgga_c_cs.lo mgga_xc_otpss_d.lo hyb_mgga_xc_m05.lo hyb_mgga_xc_tpssh.lo libtool: link: ar cru .libs/libxc.a special_functions.o bessel.o expint_e1.o integrate.o util.o mix_func.o functionals.o version.o lda.o lda_x.o lda_x_1d.o lda_x_2d.o lda_c_wigner.o lda_c_gombas.o lda_c_rpa.o lda_c_hl.o lda_c_vwn.o lda_c_pz.o lda_c_pw.o lda_c_ml1.o lda_c_rc04.o lda_xc_teter93.o lda_c_1d_csc.o lda_c_1d_loos.o lda_c_2d_amgb.o lda_c_2d_prm.o stoll.o lda_k_tf.o gga.o gga_x_lg93.o gga_x_pbe.o gga_x_rpbe.o gga_x_pbea.o gga_x_mpbe.o gga_x_herman.o gga_x_b86.o gga_x_b86_mgc.o gga_x_b88.o gga_x_g96.o gga_x_pw86.o gga_x_pw91.o gga_x_optx.o gga_x_airy.o gga_x_c09x.o gga_x_dk87.o gga_x_ft97.o gga_x_wc.o gga_x_am05.o gga_x_bayesian.o gga_x_kt.o gga_x_htbs.o gga_c_pbe.o gga_c_lyp.o gga_c_p86.o gga_c_pw91.o gga_c_am05.o gga_c_lm.o gga_c_wl.o gga_c_wi.o gga_x_lb.o gga_xc_b97.o gga_xc_edf1.o gga_xc_1w.o gga_c_optc.o gga_c_tca.o gga_x_bpccac.o gga_x_sogga11.o gga_c_sogga11.o gga_xc_th.o gga_x_wpbeh.o gga_x_hjs.o gga_x_ityh.o gga_x_sfat.o gga_x_ak13.o gga_x_q2d.o gga_c_q2d.o gga_x_ssb_sw.o gga_c_ft97.o gga_c_op.o gga_x_n12.o gga_x_lv_rpw86.o gga_x_2d_b86.o gga_x_2d_b86_mgc.o gga_x_2d_b88.o gga_x_2d_pbe.o gga_k_tflw.o gga_k_pearson.o gga_k_ol1.o gga_k_ol2.o gga_k_dk.o gga_k_meyer.o gga_x_vmt.o gga_xc_oblyp_d.o hyb_gga_xc_b3lyp.o hyb_gga_xc_o3lyp.o hyb_gga_xc_pbeh.o hyb_gga_xc_b1wc.o hyb_gga_xc_b97.o hyb_gga_xc_hse.o hyb_gga_xc_cam_b3lyp.o hyb_gga_xc_camy_blyp.o mgga.o mgga_x_lta.o mgga_x_tpss.o mgga_x_br89.o mgga_x_gvt4.o mgga_x_m06l.o mgga_x_tau_hcth.o mgga_x_2d_prhg07.o mgga_x_pkzb.o mgga_x_m05.o mgga_x_m08.o mgga_x_ms.o mgga_x_mn12.o mgga_x_mk00.o mgga_c_vsxc.o mgga_c_pkzb.o mgga_c_bc95.o mgga_c_m08.o mgga_c_cc06.o mgga_c_cs.o mgga_xc_otpss_d.o hyb_mgga_xc_m05.o hyb_mgga_xc_tpssh.o libtool: link: ranlib .libs/libxc.a libtool: link: ( cd ".libs" && rm -f "libxc.la" && ln -s "../libxc.la" "libxc.la" ) /bin/sh ../libtool --tag=CC --tag=F77 --mode=compile /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT libxcf90_la-xc_f.lo -MD -MP -MF .deps/libxcf90_la-xc_f.Tpo -c -o libxcf90_la-xc_f.lo `test -f 'xc_f.c' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/'`xc_f.c libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT libxcf90_la-xc_f.lo -MD -MP -MF .deps/libxcf90_la-xc_f.Tpo -c /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/xc_f.c -o libxcf90_la-xc_f.o mv -f .deps/libxcf90_la-xc_f.Tpo .deps/libxcf90_la-xc_f.Plo /bin/sh ../libtool --tag=FC --tag=F77 --mode=compile /opt/cray/craype/2.5.4/bin/ftn -O3 -c -o libxcf90_la-libxc_funcs.lo `test -f 'libxc_funcs.f90' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/'`libxc_funcs.f90 libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.4/bin/ftn -O3 -c libxc_funcs.f90 -o libxcf90_la-libxc_funcs.o /lib/cpp -ansi /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/libxc_master.F90 > ../src/libxc.f90 /bin/sh ../libtool --tag=FC --tag=F77 --mode=compile /opt/cray/craype/2.5.4/bin/ftn -O3 -c -o libxcf90_la-libxc.lo `test -f 'libxc.f90' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/'`libxc.f90 libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.4/bin/ftn -O3 -c libxc.f90 -o libxcf90_la-libxc.o /bin/sh ../libtool --tag=FC --tag=F77 --mode=link /opt/cray/craype/2.5.4/bin/ftn -O3 -version-info 3:2:0 -o libxcf90.la -rpath /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib libxcf90_la-xc_f.lo libxcf90_la-libxc_funcs.lo libxcf90_la-libxc.lo libxc.la libtool: ignoring unknown tag F77 libtool: link: ar cru .libs/libxcf90.a libxcf90_la-xc_f.o libxcf90_la-libxc_funcs.o libxcf90_la-libxc.o libtool: link: ranlib .libs/libxcf90.a libtool: link: ( cd ".libs" && rm -f "libxcf90.la" && ln -s "../libxcf90.la" "libxcf90.la" ) /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT xc-info.o -MD -MP -MF .deps/xc-info.Tpo -c -o xc-info.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/xc-info.c mv -f .deps/xc-info.Tpo .deps/xc-info.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-info xc-info.o libxc.la -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-info xc-info.o ./.libs/libxc.a -lm make[3]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libxc.la libxcf90.la '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib' libtool: install: /usr/bin/install -c .libs/libxc.lai /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.la libtool: install: /usr/bin/install -c .libs/libxcf90.lai /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.la libtool: install: /usr/bin/install -c .libs/libxc.a /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: chmod 644 /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: ranlib /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: /usr/bin/install -c .libs/libxcf90.a /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: install: chmod 644 /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: install: ranlib /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: finish: PATH="/opt/cray/fftw/3.3.4.10/interlagos/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/cce/8.5.5/cray-binutils/x86_64-pc-linux-gnu/bin:/opt/cray/cce/8.5.5/craylibs/x86-64/bin:/opt/cray/cce/8.5.5/cftn/bin:/opt/cray/cce/8.5.5/CC/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/libexec:/sw/xe_xk_cle5.2UP02_pe2.3.0/xalt/0.7.6/sles11.3/bin:/sw/admin/scripts:/sw/user/scripts:/sw/xe/darshan/2.3.0/darshan-2.3.0_cle52/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t3/sbin:/opt/torque/6.0.1-end/sbin:/opt/torque/6.0.1-end/bin:/opt/cray/craype/2.5.4/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1278.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t3/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/sbin" ldconfig -n /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib ---------------------------------------------------------------------- Libraries have been installed in: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c xc-info '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin' libtool: install: /usr/bin/install -c xc-info /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin/xc-info /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/xc.h /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/xc_config.h /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/src/xc_unconfig.h '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 xc_funcs.h libxc_funcs_m.mod xc_f90_lib_m.mod xc_f90_types_m.mod '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' Making install in testsuite make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_get_data-xc-get_data.o -MD -MP -MF .deps/xc_get_data-xc-get_data.Tpo -c -o xc_get_data-xc-get_data.o `test -f 'xc-get_data.c' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-get_data.c mv -f .deps/xc_get_data-xc-get_data.Tpo .deps/xc_get_data-xc-get_data.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-get_data xc_get_data-xc-get_data.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-get_data xc_get_data-xc-get_data.o -L../src/ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_consistency-xc-consistency.o -MD -MP -MF .deps/xc_consistency-xc-consistency.Tpo -c -o xc_consistency-xc-consistency.o `test -f 'xc-consistency.c' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-consistency.c mv -f .deps/xc_consistency-xc-consistency.Tpo .deps/xc_consistency-xc-consistency.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-consistency xc_consistency-xc-consistency.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-consistency xc_consistency-xc-consistency.o -L../src/ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_regression-xc-regression.o -MD -MP -MF .deps/xc_regression-xc-regression.Tpo -c -o xc_regression-xc-regression.o `test -f 'xc-regression.c' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-regression.c mv -f .deps/xc_regression-xc-regression.Tpo .deps/xc_regression-xc-regression.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-regression xc_regression-xc-regression.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-regression xc_regression-xc-regression.o -L../src/ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.4/bin/cc -DHAVE_CONFIG_H -I. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_error-xc-error.o -MD -MP -MF .deps/xc_error-xc-error.Tpo -c -o xc_error-xc-error.o `test -f 'xc-error.c' || echo '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-error.c mv -f .deps/xc_error-xc-error.Tpo .deps/xc_error-xc-error.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-error xc_error-xc-error.o -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -g -O2 -o xc-error xc_error-xc-error.o -lm make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[1]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 xc_version.h '/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64' -- Found LIBXC: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a -- Could NOT find LIBSPG (missing: LIBSPG_LIBRARIES) spglib-1.6.3/ spglib-1.6.3/aclocal.m4 spglib-1.6.3/AUTHORS spglib-1.6.3/ChangeLog spglib-1.6.3/compile spglib-1.6.3/config.guess spglib-1.6.3/config.h.in spglib-1.6.3/config.sub spglib-1.6.3/configure spglib-1.6.3/configure.ac spglib-1.6.3/COPYING spglib-1.6.3/depcomp spglib-1.6.3/example/ spglib-1.6.3/INSTALL spglib-1.6.3/install-sh spglib-1.6.3/ltmain.sh spglib-1.6.3/m4/ spglib-1.6.3/Makefile.am spglib-1.6.3/Makefile.in spglib-1.6.3/missing spglib-1.6.3/NEWS spglib-1.6.3/python/ spglib-1.6.3/README spglib-1.6.3/src/ spglib-1.6.3/test/ spglib-1.6.3/test/check_consistency.py spglib-1.6.3/test/data/ spglib-1.6.3/test/extconf.rb spglib-1.6.3/test/getspg.c spglib-1.6.3/test/poscar.rb spglib-1.6.3/test/poscar2findsym.rb spglib-1.6.3/test/README spglib-1.6.3/test/symPoscar.rb spglib-1.6.3/test/data/cubic/ spglib-1.6.3/test/data/hexagonal/ spglib-1.6.3/test/data/monoclinic/ spglib-1.6.3/test/data/orthorhombic/ spglib-1.6.3/test/data/others/ spglib-1.6.3/test/data/test-all.zsh spglib-1.6.3/test/data/test-cubic.zsh spglib-1.6.3/test/data/test-hexa.zsh spglib-1.6.3/test/data/test-monocli.zsh spglib-1.6.3/test/data/test-ortho.zsh spglib-1.6.3/test/data/test-refined_symmetry.zsh spglib-1.6.3/test/data/test-tetra.zsh spglib-1.6.3/test/data/test-tricli.zsh spglib-1.6.3/test/data/test-trigo.zsh spglib-1.6.3/test/data/tetragonal/ spglib-1.6.3/test/data/triclinic/ spglib-1.6.3/test/data/trigonal/ spglib-1.6.3/test/data/virtual_structure/ spglib-1.6.3/test/data/virtual_structure/poscar-221/ spglib-1.6.3/test/data/virtual_structure/poscar-222/ spglib-1.6.3/test/data/virtual_structure/poscar-223/ spglib-1.6.3/test/data/virtual_structure/poscar-224/ spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/ spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/ spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/ spglib-1.6.3/test/data/virtual_structure/poscars-1/ spglib-1.6.3/test/data/virtual_structure/poscars-2/ spglib-1.6.3/test/data/virtual_structure/rhombohedral/ spglib-1.6.3/test/data/virtual_structure/test-virtual.zsh spglib-1.6.3/test/data/virtual_structure/rhombohedral/POSCAR-1 spglib-1.6.3/test/data/virtual_structure/poscars-2/POSCAR-22 spglib-1.6.3/test/data/virtual_structure/poscars-2/POSCAR-26 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>/dev/null 2>&1 mv -f .deps/tetrahedron_method.Tpo .deps/tetrahedron_method.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.4/bin/cc -g -O2 -o libsymspg.la -rpath /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64 cell.lo debug.lo hall_symbol.lo kpoint.lo lattice.lo mathfunc.lo pointgroup.lo primitive.lo refinement.lo site_symmetry.lo sitesym_database.lo spacegroup.lo spg_database.lo spglib.lo spglib_f.lo spin.lo symmetry.lo tetrahedron_method.lo -lm libtool: link: /opt/cray/craype/2.5.4/bin/cc -shared -fPIC -DPIC .libs/cell.o .libs/debug.o .libs/hall_symbol.o .libs/kpoint.o .libs/lattice.o .libs/mathfunc.o .libs/pointgroup.o .libs/primitive.o .libs/refinement.o .libs/site_symmetry.o .libs/sitesym_database.o .libs/spacegroup.o .libs/spg_database.o .libs/spglib.o .libs/spglib_f.o .libs/spin.o .libs/symmetry.o .libs/tetrahedron_method.o -lm -O2 -Wl,-soname -Wl,libsymspg.so.0 -o .libs/libsymspg.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsymspg.so.0" && ln -s "libsymspg.so.0.0.0" "libsymspg.so.0") libtool: link: (cd ".libs" && rm -f "libsymspg.so" && ln -s "libsymspg.so.0.0.0" "libsymspg.so") libtool: link: ar cru .libs/libsymspg.a cell.o debug.o hall_symbol.o kpoint.o lattice.o mathfunc.o pointgroup.o primitive.o refinement.o site_symmetry.o sitesym_database.o spacegroup.o spg_database.o spglib.o spglib_f.o spin.o symmetry.o tetrahedron_method.o libtool: link: ranlib .libs/libsymspg.a libtool: link: ( cd ".libs" && rm -f "libsymspg.la" && ln -s "../libsymspg.la" "libsymspg.la" ) make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64/src' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64' -- Found LIBSPG: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/lib/spglib-1.6.3/lib64/libsymspg.a -- Found Subversion: /usr/bin/svn (found version "1.6.17") CMake Warning (dev) at SubprojectIncludes/CMakeLists.txt.rmg.inc:5 (add_dependencies): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "libspg" of target "rmg-cpu" does not exist. Call Stack (most recent call first): CMakeLists.txt:589 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done nice make -j12 rmg-cpu -- Generating done -- Build files have been written to: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/build-cpu Scanning dependencies of target InternalPseudo Scanning dependencies of target XC1 Scanning dependencies of target XC Scanning dependencies of target RmgLib [ 1%] [ 1%] Building CXX object InternalPseudo/CMakeFiles/InternalPseudo.dir/InternalPseudo.cpp.o Building Fortran object XC/CMakeFiles/XC1.dir/kind.f90.o [ 1%] Scanning dependencies of target MG Building C object XC_useLIBXC/CMakeFiles/XC.dir/xclda_libxc.c.o Scanning dependencies of target RMG_Subdiag Scanning dependencies of target RMG_Spin_XC Scanning dependencies of target RMG_Spin [ 3%] [ 3%] Building Fortran object XC/CMakeFiles/XC1.dir/io_global.f90.o Building CXX object MG/CMakeFiles/MG.dir/Mgrid_Cbindings.cpp.o [ 3%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/TradeImages.cpp.o [ 4%] Building CXX object RMG/Spin/CMakeFiles/RMG_Spin.dir/GetOppositeEigvals.cpp.o [ 4%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/ApplyOperators.cpp.o [ 4%] [ 4%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xcgga.c.o Building Fortran object XC/CMakeFiles/XC1.dir/constants.f90.o [ 4%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xclsda_spin_libxc.c.o [ 4%] Building Fortran object XC/CMakeFiles/XC1.dir/funct.f90.o [ 4%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xcgga_spin.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c: In function 'xcgga_libxc': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c:98:8: warning: 'func_id_c' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_c, func_id_c, XC_UNPOLARIZED) != 0) ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c:95:8: warning: 'func_id_x' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_x, func_id_x, XC_UNPOLARIZED) != 0) ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c: In function 'xcgga_spin_libxc': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c:108:8: warning: 'func_id_c' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_c, func_id_c, XC_POLARIZED) != 0) ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c:101:8: warning: 'func_id_x' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_x, func_id_x, XC_POLARIZED) != 0) ^ Scanning dependencies of target Finite_diff [ 4%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xcgga_libxc.c.o [ 5%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclda.c.o [ 5%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyGradient.cpp.o [ 5%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xcgga_spin_libxc.c.o [ 5%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclsda_spin.c.o Scanning dependencies of target Input /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c: In function 'gcxcpw91': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c:34:6: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] int iflag; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c: In function 'ggac_spin': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c:149:52: warning: variable 'dh0dw' set but not used [-Wunused-but-set-variable] double fz, fz2, fz3, fz4, dfz, bfup, bfdw, dh0up, dh0dw, dh0zup, dh0zdw, dh1zup, dh1zdw; ^ [ 5%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcblyp.c.o [ 6%] [ 6%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_vxc.c.o [ 7%] Building CXX object Input/CMakeFiles/Input.dir/AutoSet.cpp.o Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpw91.c.o [ 7%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_vxc_exc.c.o [ 7%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcblyp_spin.c.o [ 7%] Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/pbe.f.o [ 7%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpbe.c.o [ 7%] Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/bpgcxc.f.o [ 8%] [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/lsd_glyp.c.o Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/gga91_sr.f.o [ 9%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/corlyp.c.o [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/lyp.c.o [ 9%] Building Fortran object XC/CMakeFiles/XC1.dir/vdw_splines.f90.o [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpw91_spin.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/get_mgga_vxc.c: In function 'get_mgga_vxc': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/get_mgga_vxc.c:14:26: warning: 'nrho_oppo' may be used uninitialized in this function [-Wmaybe-uninitialized] double *exc, *nrho, *nrho_oppo; ^ [ 9%] [ 9%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_mgga_vxc.c.o Building Fortran object XC/CMakeFiles/XC1.dir/functionals.F90.o [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/pbex.c.o [ 10%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_mgga_exc_vxc.c.o [ 10%] Building Fortran object XC/CMakeFiles/XC1.dir/lsda_functionals.F90.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/pbex.c: In function 'pbec_spin': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/pbex.c:84:23: warning: variable 'fz4' set but not used [-Wunused-but-set-variable] double fz, fz2, fz3, fz4, dfz, bfup, bfdw, dh0up, dh0dw, dh0zup, dh0zdw; ^ [ 10%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_te_tau.c.o [ 12%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/perdew86.c.o [ 12%] Building Fortran object XC/CMakeFiles/XC1.dir/metagga.F90.o [ 13%] Building CXX object RMG/Spin/CMakeFiles/RMG_Spin.dir/GetOppositeOccupancies.cpp.o [ 13%] Building C object MG/CMakeFiles/MG.dir/find_grid_owner.c.o [ 13%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag.cpp.o Scanning dependencies of target RMG_Common Scanning dependencies of target Misc [ 13%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyLaplacian.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/get_te_tau.c: In function 'get_te_tau': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/get_te_tau.c:16:26: warning: 'nrho_oppo' may be used uninitialized in this function [-Wmaybe-uninitialized] double *exc, *nrho, *nrho_oppo; ^ Linking CXX static library libMG.a [ 13%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpbe_spin.c.o [ 13%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/mgga_libxc.c.o [ 13%] [ 13%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxbcp.c.o Building Fortran object XC/CMakeFiles/XC1.dir/capital.f90.o [ 14%] Built target MG [ 14%] /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/mix_tau.c: In function 'mix_tau': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/mix_tau.c:14:37: warning: unused variable 'residhist' [-Wunused-variable] static double **rhohist=NULL, **residhist=NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/mix_tau.c:14:21: warning: unused variable 'rhohist' [-Wunused-variable] static double **rhohist=NULL, **residhist=NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC_useLIBXC/mix_tau.c:13:9: warning: unused variable 'step' [-Wunused-variable] int step, inc = 1; ^ [ 14%] Building CXX object Misc/CMakeFiles/Misc.dir/InitPe4image.cpp.o [ 15%] Building CXX object Misc/CMakeFiles/Misc.dir/InitPe4kpspin.cpp.o Building Fortran object XC/CMakeFiles/XC1.dir/expint.f90.o [ 15%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetPhase.cpp.o [ 16%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxbcp_spin.c.o [ 16%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/mix_tau.c.o [ 16%] Building Fortran object XC/CMakeFiles/XC1.dir/erf.f90.o [ 16%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclda_pz81.c.o Linking Fortran static library libXC.a [ 17%] Building Fortran object XC/CMakeFiles/XC1.dir/matches.f90.o Linking C static library libRMG_Spin_XC.a [ 17%] Built target XC [ 17%] [ 17%] Built target RMG_Spin_XC [ 17%] Building Fortran object XC/CMakeFiles/XC1.dir/more_functionals.F90.o Building C object RMG/Spin/CMakeFiles/RMG_Spin.dir/get_rho_oppo.c.o [ 17%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/Lattice.cpp.o [ 18%] Building CXX object XC/CMakeFiles/XC1.dir/vdw_correlation.cpp.o [ 20%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Lapack.cpp.o [ 20%] Building CXX object Input/CMakeFiles/Input.dir/SetupGrids.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp: In constructor 'Vdw::Vdw(BaseGrid&, Lattice&, TradeImages&, int, double*, double*, double&, double&, double*, bool)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp:192:10: warning: variable 'filter_ratio' set but not used [-Wunused-but-set-variable] double filter_ratio = 1.0; ^ Linking CXX static library libRMG_Spin.a [ 20%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyAOperator.cpp.o [ 21%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyBOperator.cpp.o [ 21%] Built target RMG_Spin [ 21%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCir.cpp.o [ 21%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrFourth.cpp.o [ 21%] Building CXX object Misc/CMakeFiles/Misc.dir/SharedMemory.cpp.o [ 21%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/EnergyCorrection.cpp.o [ 21%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/BaseThread.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp: In constructor 'Vdw::Vdw(BaseGrid&, Lattice&, TradeImages&, int, double*, double*, double&, double&, double*, bool)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp:393:59: warning: 'calc_rho' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_rho, total_rho, G.default_FG_RATIO); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp:394:51: warning: 'calc_gx' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gx, gx, G.default_FG_RATIO); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp:395:51: warning: 'calc_gy' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gy, gy, G.default_FG_RATIO); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/XC/vdw_correlation.cpp:396:51: warning: 'calc_gz' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gz, gz, G.default_FG_RATIO); ^ [ 21%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Magma.cpp.o [ 21%] Building CXX object XC/CMakeFiles/XC1.dir/Functional.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RmgLib/src/BaseThread.cpp: In constructor 'BaseThread::BaseThread(int)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RmgLib/src/BaseThread.cpp:62:9: warning: unused variable 'ncpus' [-Wunused-variable] int ncpus; ^ [ 21%] Building CXX object Misc/CMakeFiles/Misc.dir/VhDriver.cpp.o [ 22%] Building CXX object Misc/CMakeFiles/Misc.dir/Pw.cpp.o [ 23%] Building CXX object Input/CMakeFiles/Input.dir/GetPrimeFactors.cpp.o [ 23%] Building CXX object Misc/CMakeFiles/Misc.dir/PfftForward.cpp.o [ 23%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/BroydenPotential.cpp.o [ 24%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/DavPreconditioner.cpp.o [ 25%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrSixth.cpp.o Scanning dependencies of target US_PP [ 25%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/BaseGrid.cpp.o [ 25%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Scalapack.cpp.o [ 25%] [ 26%] [ 26%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cir_driver.cpp.o Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/Mgrid.cpp.o Building CXX object US_PP/CMakeFiles/US_PP.dir/PackGftoc.cpp.o Linking CXX static library libXC1.a [ 26%] Building CXX object US_PP/CMakeFiles/US_PP.dir/GetPhaseSpecies.cpp.o [ 26%] Built target XC1 [ 27%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitClebschGordan.cpp.o [ 27%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Ylm.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp: In instantiation of 'char* Subdiag_Scalapack(Kpoint<StateType>*, KpointType*, KpointType*, KpointType*, double*, KpointType*) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:50:137: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:228:23: warning: unused variable 'range' [-Wunused-variable] char *range = "a"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:68:18: warning: unused variable 'trans_t' [-Wunused-variable] static char *trans_t = "t"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:75:9: warning: variable 'izero' set but not used [-Wunused-but-set-variable] int izero = 0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp: In instantiation of 'char* Subdiag_Scalapack(Kpoint<StateType>*, KpointType*, KpointType*, KpointType*, double*, KpointType*) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:51:222: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:228:23: warning: unused variable 'range' [-Wunused-variable] char *range = "a"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:68:18: warning: unused variable 'trans_t' [-Wunused-variable] static char *trans_t = "t"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:75:9: warning: variable 'izero' set but not used [-Wunused-but-set-variable] int izero = 0; ^ [ 27%] Building CXX object Misc/CMakeFiles/Misc.dir/PfftInverse.cpp.o [ 28%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrum.cpp.o [ 28%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapack.cpp.o [ 28%] Building CXX object Input/CMakeFiles/Input.dir/ReadForces.cpp.o [ 28%] Building CXX object Input/CMakeFiles/Input.dir/ReadVelocities.cpp.o [ 28%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrDriver.cpp.o [ 28%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ApplyHamiltonian.cpp.o [ 28%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ApplyHamiltonianBlock.cpp.o [ 29%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Davidson.cpp.o [ 29%] Building CXX object US_PP/CMakeFiles/US_PP.dir/CubicHarmonic.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp: In instantiation of 'int FoldedSpectrum(Kpoint<StateType>*, int, KpointType*, int, KpointType*, int, double*, double*, int, int*, int, KpointType*, int) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:71:141: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:81:16: warning: unused variable 'ZERO_t' [-Wunused-variable] KpointType ZERO_t(0.0); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:85:14: warning: unused variable 'L' [-Wunused-variable] Lattice *L = kptr->L; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:88:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:88:25: warning: unused variable 'trans_n' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:89:25: warning: unused variable 'side' [-Wunused-variable] char *cuplo = "l", *side="l", *diag="n", *jobz="V"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:89:36: warning: unused variable 'diag' [-Wunused-variable] char *cuplo = "l", *side="l", *diag="n", *jobz="V"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:91:9: warning: unused variable 'ione' [-Wunused-variable] int ione=1, itype=1, info=0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:91:17: warning: unused variable 'itype' [-Wunused-variable] int ione=1, itype=1, info=0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:92:12: warning: unused variable 'rone' [-Wunused-variable] double rone = 1.0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:140:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp: In instantiation of 'int FoldedSpectrumScalapack(Kpoint<StateType>*, int, KpointType*, KpointType*, int, KpointType*, int, double*, KpointType*, Scalapack*, int, int) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:73:150: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:82:15: warning: unused variable 'RT1' [-Wunused-variable] RmgTimer *RT1, *RT2; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:86:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:88:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:88:25: warning: unused variable 'trans_n' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:91:17: warning: unused variable 'itype' [-Wunused-variable] int ione=1, itype=1, info=0, izero=0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:94:15: warning: unused variable 'Grid' [-Wunused-variable] BaseGrid *Grid = kptr->G; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:95:14: warning: unused variable 'L' [-Wunused-variable] Lattice *L = kptr->L; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:105:9: warning: unused variable 'FSp_my_col' [-Wunused-variable] int FSp_my_col = FSp->GetCol(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:111:14: warning: unused variable 'scalapack_comm' [-Wunused-variable] MPI_Comm scalapack_comm = FSp->GetComm(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:118:10: warning: unused variable 'm_f_desca' [-Wunused-variable] int *m_f_desca = MainSp->GetDistDesca(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:147:9: warning: unused variable 's_s_dist_length' [-Wunused-variable] int s_s_dist_length = FSp->ComputeDesca(n_win, n_win, s_s_desca); ^ Linking CXX static library libInternalPseudo.a [ 29%] Built target InternalPseudo [ 30%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitWeight.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/CubicHarmonic.cpp: In function 'double CubicHarmonic(int, int, double*)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/CubicHarmonic.cpp:21:37: warning: unused variable 'm_spherical' [-Wunused-variable] double xymod, rmod, theta, phi, m_spherical; ^ [ 31%] Building CXX object Misc/CMakeFiles/Misc.dir/GeneralDiag.cpp.o [ 31%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_beta_fourth.c.o [ 31%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitWeightOne.cpp.o [ 31%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumIterator.cpp.o [ 32%] [ 32%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumSetup.cpp.o Building CXX object US_PP/CMakeFiles/US_PP.dir/InitLocalForward.cpp.o [ 32%] [ 32%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_fcc.c.o Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cil_driver.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Input/ReadVelocities.cpp: In function 'void ReadVelocities(char*, CONTROL&, std::unordered_map<std::basic_string<char>, InputKey*>&)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Input/ReadVelocities.cpp:62:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(Velocities.size() != lc.num_ions) { ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Input/ReadForces.cpp: In function 'void ReadForces(char*, CONTROL&, std::unordered_map<std::basic_string<char>, InputKey*>&)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Input/ReadForces.cpp:62:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(Forces.size() != 4 * lc.num_ions) { ^ [ 32%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MgridSubspace.cpp.o [ 33%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_ortho.c.o [ 33%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_bcc.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp: In function 'int GeneralDiagScaLapack(double*, double*, double*, double*, int, int, int)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:218:9: warning: unused variable 'scalapack_npes' [-Wunused-variable] int scalapack_npes = scalapack_nprow * scalapack_npcol; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:219:9: warning: unused variable 'root_npes' [-Wunused-variable] int root_npes = MainSp->GetRootNpes(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp: In function 'void FoldedSpectrumIterator(double*, int, double*, int, double*, double, int, int)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:59:9: warning: unused variable 'ione' [-Wunused-variable] int ione = 1; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:65:9: warning: unused variable 'sizr' [-Wunused-variable] int sizr = n * k; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:68:13: warning: unused variable 'Tgpu' [-Wunused-variable] double *Tgpu = NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:69:13: warning: unused variable 'eigs_gpu' [-Wunused-variable] double *eigs_gpu = NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp: In instantiation of 'int GeneralDiagLapack(KpointType*, KpointType*, double*, KpointType*, int, int, int) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:111:107: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:119:10: warning: unused variable 'use_folded' [-Wunused-variable] bool use_folded = ((ct.use_folded_spectrum && (ct.scf_steps > 6)) || (ct.use_folded_spectrum && (ct.runflag == RESTART))); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp: In instantiation of 'int GeneralDiagLapack(KpointType*, KpointType*, double*, KpointType*, int, int, int) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:113:21: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/GeneralDiag.cpp:119:10: warning: unused variable 'use_folded' [-Wunused-variable] /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp: In function 'void InitWeightOne(SPECIES*, double (*)[2], std::complex<double>*, int, int, int, fftw_plan, fftw_plan)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp:29:12: warning: unused variable 'r' [-Wunused-variable] double r, ax[3], bx[3]; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp:29:22: warning: unused variable 'bx' [-Wunused-variable] double r, ax[3], bx[3]; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp:38:12: warning: unused variable 'xside' [-Wunused-variable] double xside = get_xside(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp:39:12: warning: unused variable 'yside' [-Wunused-variable] double yside = get_yside(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitWeightOne.cpp:40:12: warning: unused variable 'zside' [-Wunused-variable] double zside = get_zside(); ^ [ 34%] Building CXX object Input/CMakeFiles/Input.dir/ReadInit.cpp.o [ 34%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_beta_sixth.c.o [ 35%] [ 35%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/FiniteDiff_Cbindings.cpp.o Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_driver.c.o [ 35%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_fcc.cpp.o [ 35%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_bcc.cpp.o [ 35%] [ 36%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Rmg_dsygvd_gpu.cpp.o Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cil_driver_threaded.cpp.o [ 36%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Rmg_zhegvd_gpu.cpp.o [ 36%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumGSE.cpp.o [ 36%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitLocalBackward.cpp.o [ 36%] Building CXX object Misc/CMakeFiles/Misc.dir/VhPfft.cpp.o [ 36%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MolecularDynamics.cpp.o [ 36%] Building CXX object Misc/CMakeFiles/Misc.dir/Fft_Cbindings.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp: In function 'void InitLocalBackward(double*, double*, double*)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:15: warning: variable 'Zv' set but not used [-Wunused-but-set-variable] double r, Zv, rc, rc2, rcnorm, t1; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:23: warning: variable 'rc2' set but not used [-Wunused-but-set-variable] double r, Zv, rc, rc2, rcnorm, t1; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:43:12: warning: unused variable 'x' [-Wunused-variable] double x[3]; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:12: warning: variable 'xside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:19: warning: variable 'yside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:26: warning: variable 'zside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:53:9: warning: unused variable 'npes' [-Wunused-variable] int npes = get_PE_X() * get_PE_Y() * get_PE_Z(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp: In instantiation of 'void FoldedSpectrumGSE(DataType*, DataType*, DataType*, int, int, int, int*, int*, int, int, MPI_Comm&) [with DataType = double; MPI_Comm = int]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:61:121: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:77:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t = "t"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:78:10: warning: unused variable 'usecuxt' [-Wunused-variable] bool usecuxt = true; ^ In file included from /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:21:0: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Headers/AtomicInterpolate.h:42:5: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized] if((r < LOGGRID_START)) { ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:12: note: 'r' was declared here double r, Zv, rc, rc2, rcnorm, t1; ^ [ 36%] Building CXX object Misc/CMakeFiles/Misc.dir/GetVtotPsi.cpp.o [ 36%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_grad_driver.cpp.o [ 38%] [ 38%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetAugRho.cpp.o Building CXX object Misc/CMakeFiles/Misc.dir/FftInitPlans.cpp.o [ 40%] Building CXX object US_PP/CMakeFiles/US_PP.dir/FindFftwPhaseLocalpp.cpp.o [ 41%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_grad.c.o [ 41%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app6_del2.c.o [ 42%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapackGSE.cpp.o [ 42%] [ 42%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumOrtho.cpp.o Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapackOrtho.cpp.o Linking CXX static library libFinite_diff.a [ 42%] Built target Finite_diff [ 42%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Radius2grid.cpp.o [ 42%] Building CXX object US_PP/CMakeFiles/US_PP.dir/FindPhase.cpp.o [ 42%] Building CXX object Misc/CMakeFiles/Misc.dir/FftFreqBin.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp: In instantiation of 'void FoldedSpectrumOrtho(int, int, int, int*, int*, KpointType*, KpointType*, int, MPI_Comm&) [with KpointType = double; MPI_Comm = int]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:57:108: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:64:12: warning: unused variable 'rzero' [-Wunused-variable] double rzero = 0.0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:65:12: warning: unused variable 'rone' [-Wunused-variable] double rone = 1.0; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:82:53: warning: unused variable 'side' [-Wunused-variable] char *trans_t="t", *trans_n="n", *cuplo = "l", *side = "l"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:140:14: warning: variable 'omp_tid' set but not used [-Wunused-but-set-variable] int idx, omp_tid; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:142:13: warning: variable 'st1' set but not used [-Wunused-but-set-variable] int st, st1; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp: In instantiation of 'void FoldedSpectrumScalapackOrtho(int, int, int, int*, int*, KpointType*, KpointType*, KpointType*, KpointType*, KpointType*, Scalapack*) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:57:143: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:65:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:86:53: warning: unused variable 'side' [-Wunused-variable] char *trans_t="t", *trans_n="n", *cuplo = "l", *side = "l"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:102:9: warning: unused variable 'FSp_nodes' [-Wunused-variable] int FSp_nodes = FSp_rows * FSp_cols; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:103:9: warning: unused variable 'FSp_context' [-Wunused-variable] int FSp_context = FSp->GetContext(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:104:9: warning: unused variable 'FSp_my_index' [-Wunused-variable] int FSp_my_index = FSp_my_row*FSp_cols + FSp_my_col; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:166:14: warning: variable 'omp_tid' set but not used [-Wunused-but-set-variable] int idx, omp_tid; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:168:13: warning: variable 'st1' set but not used [-Wunused-but-set-variable] int st, st1; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp: In instantiation of 'void FoldedSpectrumScalapackGSE(DataType*, DataType*, DataType*, int, int, int, int*, int*, int, Scalapack*) [with DataType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:62:132: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:81:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t = "t"; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:85:9: warning: unused variable 'THIS_PE' [-Wunused-variable] int THIS_PE = FSp->GetGroupIndex(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:86:9: warning: unused variable 'my_root_index' [-Wunused-variable] int my_root_index = MainSp->GetCommRank(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:89:10: warning: unused variable 'm_f_desca' [-Wunused-variable] int *m_f_desca = MainSp->GetDistDesca(); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:90:9: warning: unused variable 'm_f_dist_length' [-Wunused-variable] int m_f_dist_length = MainSp->ComputeMdim(n) * MainSp->ComputeNdim(n); ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:96:9: warning: unused variable 's_f_dist_length' [-Wunused-variable] int s_f_dist_length = FSp->ComputeDesca(n, n, s_f_desca); ^ [ 42%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MixRho.cpp.o [ 42%] Building CXX object Input/CMakeFiles/Input.dir/ReadRmgAtoms.cpp.o [ 42%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_del2_driver.cpp.o [ 42%] Building CXX object Input/CMakeFiles/Input.dir/ReadDynamics.cpp.o [ 42%] Building CXX object Input/CMakeFiles/Input.dir/ReadKpoints.cpp.o [ 43%] Building CXX object Input/CMakeFiles/Input.dir/ReadKpointsBandstructure.cpp.o [ 44%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Atomic.cpp.o [ 44%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/FiniteDiff.cpp.o Linking CXX static library libRMG_Subdiag.a [ 44%] Building CXX object Input/CMakeFiles/Input.dir/Verify.cpp.o [ 44%] Building CXX object Misc/CMakeFiles/Misc.dir/FftFilter.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Input/ReadRmgAtoms.cpp:32:27: fatal error: openbabel/mol.h: No such file or directory #include <openbabel/mol.h> ^ compilation terminated. make[3]: *** [Input/CMakeFiles/Input.dir/ReadRmgAtoms.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... [ 44%] Built target RMG_Subdiag [ 44%] [ 44%] [ 45%] Building CXX object Input/CMakeFiles/Input.dir/InputKey.cpp.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteData.cpp.o Building CXX object Misc/CMakeFiles/Misc.dir/FftLaplacian.cpp.o [ 46%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgTimer.cpp.o [ 46%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgPrintTimings.cpp.o [ 46%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgSumAll.cpp.o Scanning dependencies of target Force /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp: In function 'void RmgPrintTimings(MPI_Comm, const char*, int, int)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp:21:12: warning: unused variable 'time1' [-Wunused-variable] double time1, time2; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp:21:19: warning: unused variable 'time2' [-Wunused-variable] double time1, time2; ^ [ 46%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Atomic_Cbindings.cpp.o [ 46%] Building CXX object Force/CMakeFiles/Force.dir/CorrectForces.cpp.o [ 46%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitPseudo.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/Atomic.cpp: In member function 'void Atomic::InitBessel(double*, int, int, double*)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/Atomic.cpp:592:9: warning: unused variable 'istep' [-Wunused-variable] int istep; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/Atomic.cpp:594:9: warning: unused variable 'npes' [-Wunused-variable] int npes = Rmg_G->get_PE_X() * Rmg_G->get_PE_Y() * Rmg_G->get_PE_Z(); ^ [ 46%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitQfunct.cpp.o [ 46%] Building CXX object Misc/CMakeFiles/Misc.dir/FftGradient.cpp.o [ 46%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteBGW.cpp.o [ 47%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MixBetaxpsi1.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/CorrectForces.cpp: In function 'void CorrectForces(double*, double*, double*, double*, double*)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/CorrectForces.cpp:57:45: warning: unused variable 'mone' [-Wunused-variable] double alpha = get_vel_f(), zero = 0.0, mone = -1.0; ^ make[2]: *** [Input/CMakeFiles/Input.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 47%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteRestart.cpp.o [ 47%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/LcaoGetAwave.cpp.o [ 48%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/LcaoGetPsi.cpp.o [ 49%] Building CXX object Force/CMakeFiles/Force.dir/Lforce.cpp.o [ 49%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ReadData.cpp.o [ 49%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/OutputBandPlot.cpp.o [ 50%] Building CXX object US_PP/CMakeFiles/US_PP.dir/US_Cbindings.cpp.o [ 50%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AppCirDriverBeta.cpp.o [ 50%] Building CXX object Misc/CMakeFiles/Misc.dir/FftInterpolation.cpp.o [ 51%] Building CXX object Misc/CMakeFiles/Misc.dir/FftRestrict.cpp.o [ 51%] [ 52%] Building CXX object Misc/CMakeFiles/Misc.dir/CountAtomicOrbitals.cpp.o Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgMaxAll.cpp.o [ 52%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/rmg_error.cpp.o [ 53%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AssignWeight.cpp.o [ 53%] [ 53%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/get_vh.cpp.o Building C object Force/CMakeFiles/Force.dir/constrain.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/constrain.c: In function 'constrain': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/constrain.c:443:51: warning: 'iptr' may be used uninitialized in this function [-Wmaybe-uninitialized] iptr->constraint.forcemask[Y] = (Mag_T - FdotT) * Tau[3*ion+Y]; ^ [ 54%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/packfuncs.cpp.o [ 54%] Building CXX object Force/CMakeFiles/Force.dir/Force.cpp.o [ 54%] Building C object US_PP/CMakeFiles/US_PP.dir/lcao_get_rho.c.o [ 55%] Building C object Force/CMakeFiles/Force.dir/iiforce.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/iiforce.c: In function 'iiforce': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/iiforce.c:49:20: warning: unused variable 'tz' [-Wunused-variable] double tx, ty, tz; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/iiforce.c:49:16: warning: unused variable 'ty' [-Wunused-variable] double tx, ty, tz; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Force/iiforce.c:49:12: warning: unused variable 'tx' [-Wunused-variable] double tx, ty, tz; ^ [ 55%] Building C object US_PP/CMakeFiles/US_PP.dir/init_nuc.c.o [ 55%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetWeight.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp: In instantiation of 'void OutputBandPlot(Kpoint<StateType>**) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:51:47: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:142:19: warning: unused variable 'line_object' [-Wunused-variable] char *line_object; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:59:30: warning: unused variable 'pngfile' [-Wunused-variable] char filename[MAX_PATH], pngfile[MAX_PATH]; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp: In instantiation of 'void OutputBandPlot(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:52:62: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:142:19: warning: unused variable 'line_object' [-Wunused-variable] char *line_object; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:59:30: warning: unused variable 'pngfile' [-Wunused-variable] char filename[MAX_PATH], pngfile[MAX_PATH]; ^ [ 56%] Building C object US_PP/CMakeFiles/US_PP.dir/init_efield.c.o [ 56%] [ 56%] [ 56%] Building CXX object Force/CMakeFiles/Force.dir/Nlccforce.cpp.o Building CXX object Misc/CMakeFiles/Misc.dir/FilenameIncrement.cpp.o Building C object US_PP/CMakeFiles/US_PP.dir/weight_shift_center.c.o [ 56%] Building C object US_PP/CMakeFiles/US_PP.dir/ylmr2.c.o [ 56%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetWeightLocal.cpp.o [ 56%] Building CXX object Misc/CMakeFiles/Misc.dir/Scalapack.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp: In instantiation of 'void GetWeight(Kpoint<StateType>**) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp:38:55: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp:105:17: warning: unused variable 'size' [-Wunused-variable] int size = nlxdim * nlydim * nlzdim; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp: In instantiation of 'void GetWeight(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp:39:83: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetWeight.cpp:105:17: warning: unused variable 'size' [-Wunused-variable] [ 57%] Building C object Misc/CMakeFiles/Misc.dir/open_restart_file.c.o [ 58%] Building CXX object Misc/CMakeFiles/Misc.dir/cnpy.cpp.o Linking CXX static library libRmgLib.a [ 58%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetNlop.cpp.o [ 58%] [ 58%] Built target RmgLib Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ReinitIonicPotentials.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/open_restart_file.c: In function 'open_restart_file': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/open_restart_file.c:67:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (!mkdir (dirname (tmpname), S_IRWXU)) ^ [ 60%] Building C object US_PP/CMakeFiles/US_PP.dir/linint.c.o [ 60%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/transition_rmg.cpp.o [ 60%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/PotentialAcceleration.cpp.o [ 61%] [ 61%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetNewRho.cpp.o Building C object US_PP/CMakeFiles/US_PP.dir/get_QnmL.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/Scalapack.cpp: In constructor 'Scalapack::Scalapack(int, int, int, int, int, int, MPI_Comm)': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/Scalapack.cpp:115:9: warning: unused variable 'item' [-Wunused-variable] int item = thisimg % images_per_node; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/Misc/LinePlot.cpp:15:22: fatal error: plstream.h: No such file or directory #include <plstream.h> ^ compilation terminated. make[3]: *** [Misc/CMakeFiles/Misc.dir/LinePlot.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... [ 61%] [ 61%] Building CXX object Misc/CMakeFiles/Misc.dir/LinePlot.cpp.o Building C object US_PP/CMakeFiles/US_PP.dir/radiff.c.o [ 61%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Betaxpsi.cpp.o [ 61%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Init.cpp.o [ 62%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Main.cpp.o [ 62%] Building C object US_PP/CMakeFiles/US_PP.dir/ylm.c.o [ 63%] Building CXX object US_PP/CMakeFiles/US_PP.dir/GetQI.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp: In instantiation of 'void GetNlop(Kpoint<StateType>**) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp:41:49: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp:49:21: warning: variable 'prj_per_ion' set but not used [-Wunused-but-set-variable] int ix, iy, iz, prj_per_ion; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp: In instantiation of 'void GetNlop(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp:42:78: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/GetNlop.cpp:49:21: warning: variable 'prj_per_ion' set but not used [-Wunused-but-set-variable] make[2]: *** [Misc/CMakeFiles/Misc.dir/all] Error 2 Linking CXX static library libForce.a [ 63%] [ 63%] Building C object US_PP/CMakeFiles/US_PP.dir/get_qqq.c.o Building C object US_PP/CMakeFiles/US_PP.dir/radint1.c.o [ 64%] [ 64%] Building C object US_PP/CMakeFiles/US_PP.dir/get_ddd.c.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AppNls.cpp.o [ 64%] Building C object US_PP/CMakeFiles/US_PP.dir/radint.c.o [ 64%] [ 64%] Built target Force Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Kpoint.cpp.o [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Quench.cpp.o [ 65%] [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Relax.cpp.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/State.cpp.o [ 65%] Building C object US_PP/CMakeFiles/US_PP.dir/pack_gftoc.c.o [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/RmgThread.cpp.o [ 66%] /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/pack_gftoc.c: In function 'pack_gftoc': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/US_PP/pack_gftoc.c:24:9: warning: variable 'ixstart' set but not used [-Wunused-but-set-variable] int ixstart = -(nlxdim )/2; ^ Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/OutputEigenvalues.cpp.o [ 66%] [ 66%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Scf.cpp.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/pack_stop_axpy.cpp.o [ 67%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/genvpsi.cpp.o Linking CXX static library libUS_PP.a [ 67%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MgEigState.cpp.o [ 67%] Built target US_PP [ 67%] /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/scalapack_tools.c: In function 'matsum_packbuffer': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/scalapack_tools.c:511:56: warning: unused variable 'idx' [-Wunused-variable] int i, j, ii, jj, iii, jjj, li, lj, maxrow, maxcol,idx; ^ Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_occ.c.o [ 67%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetGamma.cpp.o [ 68%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/fastrelax.c.o [ 68%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/scalapack_tools.c.o [ 68%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/lbfgs_init.c.o [ 69%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Nlforce.cpp.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/Relax.cpp: In function 'void Relax(int, double*, double*, double*, double*, double*, double*, double*, Kpoint<StateType>**) [with OrbitalType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/Relax.cpp:146:9: warning: 'CONV_FORCE' may be used uninitialized in this function [-Wmaybe-uninitialized] if (CONV_FORCE) ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/Relax.cpp: In function 'void Relax(int, double*, double*, double*, double*, double*, double*, double*, Kpoint<StateType>**) [with OrbitalType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/Relax.cpp:146:9: warning: 'CONV_FORCE' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 71%] [ 71%] [ 71%] [ 71%] [ 71%] [ 71%] [ 71%] [ 71%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/output_wave.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/getpoi_bc.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/get_extrapolation_constants.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_gamma.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/rand0.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_force.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/nlforce_par_gamma.c: In function 'nlforce_par_gamma': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/nlforce_par_gamma.c:31:32: warning: unused variable 'three' [-Wunused-variable] int idx, idx1, size, n, m, three = 3; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/getpoi_bc.c: In function 'getpoi_bc': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/getpoi_bc.c:44:12: warning: variable 'r' set but not used [-Wunused-but-set-variable] double r, xc, yc, zc, x, y, z; ^ Building C object RMG/Common/CMakeFiles/RMG_Common.dir/pack_rho_ctof.c.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/app_smooth1.cpp.o [ 71%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_header.c.o [ 72%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/BandStructure.cpp.o [ 72%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/wvfn_residual.c.o [ 72%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_avgd.c.o [ 72%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/bsplines.c.o [ 73%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/debug_write_rho_z.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c: In function 'dbsint': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c:239:16: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int leftx, ilp1mx; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c: In function 'spli2d': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c:962:55: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int i, j, jj, km1, np1, left, lenq, kpkm2, iflag, ilp1mx; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c: In function 'spli3d': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c:1357:59: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int i, j, jj, in, km1, np1, left, lenq, kpkm2, iflag, ilp1mx; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c: At top level: /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/bsplines.c:1495:15: warning: 'dbs3vl' defined but not used [-Wunused-function] static double dbs3vl (double x, double y, double z__, int kx, ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/nlforce_par_Q.c: In function 'nlforce_par_Q': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/nlforce_par_Q.c:35:12: warning: unused variable 'tmp' [-Wunused-variable] double tmp; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/nlforce_par_Q.c:33:9: warning: unused variable 'idx1' [-Wunused-variable] int idx1, idx2, n, m, count, icount, size; ^ [ 73%] [ 73%] [ 74%] [ 74%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/claim_ion.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_pdb.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_omega.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/real_min_all.c.o [ 74%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/neb_relax.c.o [ 74%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/app_smooth.cpp.o [ 75%] [ 75%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/init_gpu.c.o [ 75%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/xbsmovie.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_zstates.c.o [ 76%] [ 76%] [ 76%] [ 77%] [ 77%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/symmetry.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/lbfgs.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_Q.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/rmg_lbfgs.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/test_overlap.c.o [ 77%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_avgv.c.o [ 77%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/move_ions.c.o [ 78%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/ranv.c.o [ 78%] [ 78%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/print_density_z_direction.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/set_pbc.c.o [ 80%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/pulay_rho.c.o [ 80%] /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/print_density_z_direction.c: In function 'print_density_z_direction': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/print_density_z_direction.c:48:69: warning: variable 'max_grid_z' set but not used [-Wunused-but-set-variable] int min_grid_x, min_grid_y, min_grid_z, max_grid_x, max_grid_y, max_grid_z; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/print_density_z_direction.c:47:33: warning: variable 'zgrid' set but not used [-Wunused-but-set-variable] int p0_basis, xgrid, ygrid, zgrid; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/pulay_rho.c: In function 'pulay_rho': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/pulay_rho.c:68:12: warning: unused variable 'work' [-Wunused-variable] double work[MAX_STEPS*20]; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/pulay_rho.c:67:9: warning: unused variable 'lwork' [-Wunused-variable] int lwork = MAX_STEPS*20; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/fire.c: In function 'fire': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/fire.c:136:2: warning: value computed is not used [-Wunused-value] *n_count ++; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/pulay_rho.c:151:4: warning: 'trade_space' may be used uninitialized in this function [-Wmaybe-uninitialized] special_dot_product(fi, fj, trade_space, weight, N_x, N_y, N_z); ^ Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/PartialGamma.cpp.o [ 80%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/fire.c.o [ 80%] [ 81%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/mg_prolong_6.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/partial_beta_fdiff.c.o [ 81%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/get_dipole.c.o /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp: In instantiation of 'void BandStructure(Kpoint<StateType>**, double*, double*, double*) [with KpointType = double]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:50:85: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:14: warning: unused variable 'istop' [-Wunused-variable] int idx, istop, st1, ist; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:21: warning: unused variable 'st1' [-Wunused-variable] int idx, istop, st1, ist; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:26: warning: unused variable 'ist' [-Wunused-variable] int idx, istop, st1, ist; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp: In instantiation of 'void BandStructure(Kpoint<StateType>**, double*, double*, double*) [with KpointType = std::complex<double>]': /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:51:100: required from here /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:14: warning: unused variable 'istop' [-Wunused-variable] int idx, istop, st1, ist; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:21: warning: unused variable 'st1' [-Wunused-variable] int idx, istop, st1, ist; ^ /mnt/a/u/system/bwjenkins/openbabel-2.3.2/build/plplot.git/build/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:26: warning: unused variable 'ist' [-Wunused-variable] int idx, istop, st1, ist; ^ Linking CXX static library libRMG_Common.a make[1]: *** [CMakeFiles/rmg-cpu.dir/rule] Error 2 make: *** [rmg-cpu] Error 2 rm -rf ~/scratch/rmg-spp mkdir -p ~/scratch/rmg-spp mkdir: cannot create directory `/var/lib/jenkins': Permission denied #cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs #cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/ cp /projects/bluewaters/benchmarking/SPP/rmg/small/* ~/scratch/rmg-spp/ cp: target `/var/lib/jenkins/scratch/rmg-spp/' is not a directory cd ~/scratch/rmg-spp bash: line 68: cd: /var/lib/jenkins/scratch/rmg-spp: No such file or directory cp ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu ./ cp: cannot stat `/var/lib/jenkins/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu': No such file or directory cat run.pbs | sed -e "s/aprun/time aprun/g" > myrunA.pbs cat: run.pbs: No such file or directory cat myrunA.pbs | sed -e "s/OMP_NUM_THREADS=1/OM_NUM_THREADS=1\nexport LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:\$HOME\/rmg-spp\/openbabel-2.3.2\/install\/lib/g" > myrun.pbs cat -n myrun.pbs MYJOBID=`qsub myrun.pbs` qsub myrun.pbs [ 81%] Built target RMG_Common Warning: No aprun was detected in the PBS job script. Please make sure your job script eventually invokes aprun to place applications on the compute nodes. Send email to [email protected] for assistance. Error: nodes= or procs= not specified Please add either -l nodes=<#nodes>:ppn=<#ppn> or -l procs=# to your submission to specify the required amount of compute resources qsub: Your job has been administratively rejected by the queueing system. qsub: There may be a more detailed explanation prior to this notice. echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID tail *.log > ~/rmg-spp/rmg.logtail.txt bash: line 78: /var/lib/jenkins/rmg-spp/rmg.logtail.txt: No such file or directory grep "real" z302water_cpu100.o* grep: z302water_cpu100.o*: No such file or directory MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1 egrep: z302water_cpu100.o*: No such file or directory echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime bash: line 82: /var/lib/jenkins/rmg-spp/rmg.realtime: No such file or directory cat -n ~/rmg-spp/rmg.realtime cat: /var/lib/jenkins/rmg-spp/rmg.realtime: No such file or directory MYJOBID= === RUNNING /u/staff/arnoldg/ior/wait_for.sh === /u/staff/arnoldg/ior/wait_for.sh: missing argument for jobid [SSH] exit-status: 1 Build step 'Execute shell script on remote host using ssh' marked build as failure Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/rmg-spp-newpe/rmg.realtime Finished: FAILURE