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Started by user Greg Bauer Building on master in workspace /var/lib/jenkins/workspace/rmg-spp executing script: PATH="/sw/tools/bin:/sw/tools/bin:$PATH" set -v # specify installation directory export INSTDIR=~/rmg-spp #rm -rf $INSTDIR mkdir $INSTDIR module swap PrgEnv-cray PrgEnv-gnu module swap gcc gcc/4.9.3 module load boost module load cmake/3.1.3 module load fftw export CRAYPE_LINK_TYPE=dynamic export CRAY_ADD_RPATH=yes # install openbabel library cd $INSTDIR wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz tar zxvf openbabel-2.3.2.tar.gz cd openbabel-2.3.2/ mkdir build cd build/ cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/openbabel-2.3.2/install .. nice make -j8 make install export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib export CC=cc export CXX=CC export FC=ftn # install plplot library cd $INSTDIR git clone git://git.code.sf.net/p/plplot/plplot plplot.git cd plplot.git/ mkdir build cd build cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/plplot.git/install .. make make install # install CPU-version of RMG cd $INSTDIR wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz tar zxvf rmg-release_2.1.tar.gz cd rmg-release_2.1 mkdir build-cpu; cd build-cpu cmake -DOPENBABEL_INCLUDES=$INSTDIR/openbabel-2.3.2/install/include/openbabel-2.0/openbabel -DOPENBABEL_LIBRARIES=$INSTDIR/openbabel-2.3.2/install/lib/libopenbabel.so.4.0.2 -DPLplot_INCLUDE_DIR=$INSTDIR/plplot.git/install/include -DPLplot_cxx_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplotcxx.so -DPLplot_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplot.so .. nice make -j12 rmg-cpu rm -rf ~/scratch/rmg-spp mkdir -p ~/scratch/rmg-spp cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/ cd ~/scratch/rmg-spp cat run.pbs | grep -v aprun > myrun.pbs echo "time aprun -n 400 -N 4 -d 8 -cc numa_node ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu 302waters.rmg_cpu" >> myrun.pbs cat -n myrun.pbs MYJOBID=`qsub myrun.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID tail *.log > ~/rmg-spp/rmg.logtail.txt grep "real" z302water_cpu100.o* MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime cat -n ~/rmg-spp/rmg.realtime # specify installation directory export INSTDIR=~/rmg-spp #rm -rf $INSTDIR mkdir $INSTDIR mkdir: cannot create directory `/u/system/bwjenkins/rmg-spp': File exists module swap PrgEnv-cray PrgEnv-gnu ${MODULESHOME}/bin/modulecmd bash $* ATP_HOME=/opt/cray/atp/2.0.4 ;export ATP_HOME;ATP_IGNORE_SIGTERM=1 ;export ATP_IGNORE_SIGTERM;ATP_MRNET_COMM_PATH=/opt/cray/atp/2.0.4/libexec/atp_mrnet_commnode_wrapper ;export ATP_MRNET_COMM_PATH;ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/2.0.4/libApp/\ ;export ATP_POST_LINK_OPTS;CRAYOS_VERSION=5.2.82 ;export CRAYOS_VERSION;CRAYPE_DIR=/opt/cray/craype/2.5.8 ;export CRAYPE_DIR;CRAYPE_NETWORK_TARGET=gemini ;export CRAYPE_NETWORK_TARGET;CRAYPE_VERSION=2.5.8 ;export CRAYPE_VERSION;CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include ;export CRAY_ALPS_INCLUDE_OPTS;CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 ;export CRAY_ALPS_POST_LINK_OPTS;CRAY_CPU_TARGET=interlagos ;export CRAY_CPU_TARGET;CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/include\ -I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include\ ;export CRAY_DMAPP_INCLUDE_OPTS;CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64 ;export CRAY_DMAPP_POST_LINK_OPTS;CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include ;export CRAY_GNI_HEADERS_INCLUDE_OPTS;CRAY_LD_LIBRARY_PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib:/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib ;export CRAY_LD_LIBRARY_PATH;CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/16.11.1 ;export CRAY_LIBSCI_BASE_DIR;CRAY_LIBSCI_DIR=/opt/cray/libsci/16.11.1 ;export CRAY_LIBSCI_DIR;CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/16.11.1/GNU/4.9/x86_64 ;export CRAY_LIBSCI_PREFIX_DIR;CRAY_LIBSCI_VERSION=16.11.1 ;export CRAY_LIBSCI_VERSION;CRAY_MPICH2_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export CRAY_MPICH2_DIR;CRAY_MPICH2_VER=7.5.0 ;export CRAY_MPICH2_VER;CRAY_MPICH_BASEDIR=/opt/cray/mpt/7.5.0/gni ;export CRAY_MPICH_BASEDIR;CRAY_MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export CRAY_MPICH_DIR;CRAY_MPICH_ROOTDIR=/opt/cray/mpt/7.5.0 ;export CRAY_MPICH_ROOTDIR;CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/include ;export CRAY_PMI_INCLUDE_OPTS;CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64 ;export CRAY_PMI_POST_LINK_OPTS;CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini ;export CRAY_PRE_COMPILE_OPTS;CRAY_PRGENVGNU=loaded ;export CRAY_PRGENVGNU;CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include\ -I/opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include\ -I/opt/cray-hss-devel/7.2.0/include\ ;export CRAY_RCA_INCLUDE_OPTS;CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64\ -lrca\ ;export CRAY_RCA_POST_LINK_OPTS;CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/include ;export CRAY_UDREG_INCLUDE_OPTS;CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64 ;export CRAY_UDREG_POST_LINK_OPTS;CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include ;export CRAY_UGNI_INCLUDE_OPTS;CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64 ;export CRAY_UGNI_POST_LINK_OPTS;CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/include ;export CRAY_XPMEM_INCLUDE_OPTS;CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64 ;export CRAY_XPMEM_POST_LINK_OPTS;DMAPP_ABORT_ON_ERROR=1 ;export DMAPP_ABORT_ON_ERROR;DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/include ;export DVS_INCLUDE_OPTS;DVS_VERSION=0.9.0 ;export DVS_VERSION;GCC_PATH=/opt/gcc/4.9.3 ;export GCC_PATH;GCC_VERSION=4.9.3 ;export GCC_VERSION;GNU_VERSION=4.9.3 ;export GNU_VERSION;INFOPATH=/opt/gcc/4.9.3/snos/share/info:/usr/local/info:/usr/share/info:/usr/info ;export INFOPATH;LD_LIBRARY_PATH=/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/3.1.3/darshan-3.1.3/lib:/usr/local/globus-5.2.5/lib64:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LIBSCI_BASE_DIR=/opt/cray/libsci/16.11.1 ;export LIBSCI_BASE_DIR;LIBSCI_VERSION=16.11.1 ;export LIBSCI_VERSION;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:gcc/4.9.3:craype-network-gemini:craype-interlagos:craype/2.5.8:cray-mpich/7.5.0:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:gnuplot/5.0.5:darshan/3.1.3:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-gnu/5.2.82 ;export LOADEDMODULES;MANPATH=/opt/cray/atp/2.0.4/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.11.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/EasyBuild/software/gnuplot/5.0.5/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t7/share/man/:/opt/torque/6.0.4/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/craype/2.5.8/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t7/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;MODULEPATH=/sw/EasyBuild/modules/all:/sw/bw/modulefiles:/sw/xe/modulefiles:/usr/local/modulefiles:/opt/cray/gem/modulefiles:/opt/cray/craype/2.5.8/modulefiles:/opt/cray/modulefiles:/opt/modulefiles ;export MODULEPATH;MPICH_ABORT_ON_ERROR=1 ;export MPICH_ABORT_ON_ERROR;MPICH_DIR=/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9 ;export MPICH_DIR;PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_ACML_DEFAULT_DIR_CRAY=gfortran64 ;export PE_ACML_DEFAULT_DIR_CRAY;PE_ACML_DEFAULT_DIR_DEFAULT64=_int64 ;export PE_ACML_DEFAULT_DIR_DEFAULT64;PE_ACML_DEFAULT_DIR_GNU=gfortran64 ;export PE_ACML_DEFAULT_DIR_GNU;PE_ACML_DEFAULT_DIR_INTEL=ifort64 ;export PE_ACML_DEFAULT_DIR_INTEL;PE_ACML_DEFAULT_DIR_OPENMP=_mp ;export PE_ACML_DEFAULT_DIR_OPENMP;PE_ACML_DEFAULT_DIR_PGI=pgi64 ;export PE_ACML_DEFAULT_DIR_PGI;PE_ACML_DEFAULT_TARGET_interlagos=_fma4 ;export PE_ACML_DEFAULT_TARGET_interlagos;PE_ACML_DEFAULT_TARGET_x86_64= ;export PE_ACML_DEFAULT_TARGET_x86_64;PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/acml/5.3.1/@PE_ACML_DEFAULT_DIR@@PE_ACML_DEFAULT_TARGET@@PE_ACML_DEFAULT_DIR_OPENMP@@PE_ACML_DEFAULT_DIR_DEFAULT64@/lib/pkgconfig ;export PE_ACML_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/CRAY/8.3/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1/CRAY/8.3/lib/pkgconfig:/opt/cray/netcdf/4.4.1/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0/CRAY/8.3/lib/pkgconfig:/opt/cray/hdf5/1.10.0/CRAY/8.3/lib/pkgconfig:/opt/cray/ga/5.3.0.7/CRAY/8.4/lib/pkgconfig ;export PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH;PE_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_CXX_PKGCONFIG_LIBS;PE_ENV=GNU ;export PE_ENV;PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_FFTW_DEFAULT_REQUIRED_PRODUCTS;PE_FFTW_DEFAULT_TARGET_abudhabi=abudhabi ;export PE_FFTW_DEFAULT_TARGET_abudhabi;PE_FFTW_DEFAULT_TARGET_broadwell=broadwell ;export PE_FFTW_DEFAULT_TARGET_broadwell;PE_FFTW_DEFAULT_TARGET_haswell=haswell ;export PE_FFTW_DEFAULT_TARGET_haswell;PE_FFTW_DEFAULT_TARGET_interlagos=interlagos ;export PE_FFTW_DEFAULT_TARGET_interlagos;PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge ;export PE_FFTW_DEFAULT_TARGET_ivybridge;PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl ;export PE_FFTW_DEFAULT_TARGET_mic_knl;PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge ;export PE_FFTW_DEFAULT_TARGET_sandybridge;PE_FFTW_DEFAULT_TARGET_share=share ;export PE_FFTW_DEFAULT_TARGET_share;PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 ;export PE_FFTW_DEFAULT_TARGET_x86_64;PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.4.10/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig ;export PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_FORTRAN_PKGCONFIG_LIBS;PE_GA_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_GA_DEFAULT_FIXED_PRGENV;PE_GA_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_GA_DEFAULT_GENCOMPILERS_GNU;PE_GA_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_GA_DEFAULT_GENCOMPS_GNU;PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/ga/5.3.0.7/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_GA_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_GA_DEFAULT_VOLATILE_PRGENV;PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_HDF5_DEFAULT_FIXED_PRGENV;PE_HDF5_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_HDF5_DEFAULT_GENCOMPILERS_GNU;PE_HDF5_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_HDF5_DEFAULT_GENCOMPS_GNU;PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_HDF5_DEFAULT_REQUIRED_PRODUCTS;PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5/1.10.0/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_HDF5_DEFAULT_VOLATILE_PRGENV;PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV;PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU;PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU;PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS;PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/hdf5-parallel/1.10.0/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV;PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/INTEL/15.0/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1/INTEL/15.0/lib/pkgconfig:/opt/cray/netcdf/4.4.1/INTEL/15.0/lib/pkgconfig:/opt/cray/mpt/7.5.0/gni/mpich-intel/16.0/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0/INTEL/15.0/lib/pkgconfig:/opt/cray/hdf5/1.10.0/INTEL/15.0/lib/pkgconfig:/opt/cray/ga/5.3.0.7/INTEL/15.0/lib/pkgconfig ;export PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH;PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64=4.9 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64;PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=49 ;export PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64;PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 ;export PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20;PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 ;export PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35;PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ ;export PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES;PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS;PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci_acc/16.03.1/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig ;export PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU ;export PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV;PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.1 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_mic_knl=15.0 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_LIBSCI_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_LIBSCI_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_GNU_mic_knl=51 ;export PE_LIBSCI_DEFAULT_GENCOMPS_GNU_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_mic_knl=150 ;export PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_mic_knl;PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64;PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_LIBSCI_DEFAULT_GENCOMPS_PGI_x86_64;PE_LIBSCI_DEFAULT_OMP_REQUIRES= ;export PE_LIBSCI_DEFAULT_OMP_REQUIRES;PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp ;export PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp;PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ ;export PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES;PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH ;export PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS;PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/16.11.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig ;export PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU\ INTEL\ PGI ;export PE_LIBSCI_DEFAULT_VOLATILE_PRGENV;PE_LIBSCI_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_LIBSCI_GENCOMPILERS_CRAY_mic_knl;PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_LIBSCI_GENCOMPILERS_CRAY_x86_64;PE_LIBSCI_GENCOMPILERS_GNU_mic_knl=5.1 ;export PE_LIBSCI_GENCOMPILERS_GNU_mic_knl;PE_LIBSCI_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_LIBSCI_GENCOMPILERS_GNU_x86_64;PE_LIBSCI_GENCOMPILERS_INTEL_mic_knl=15.0 ;export PE_LIBSCI_GENCOMPILERS_INTEL_mic_knl;PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_LIBSCI_GENCOMPILERS_INTEL_x86_64;PE_LIBSCI_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_LIBSCI_GENCOMPILERS_PGI_x86_64;PE_LIBSCI_GENCOMPS_CRAY_mic_knl=85 ;export PE_LIBSCI_GENCOMPS_CRAY_mic_knl;PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 ;export PE_LIBSCI_GENCOMPS_CRAY_x86_64;PE_LIBSCI_GENCOMPS_GNU_mic_knl=51 ;export PE_LIBSCI_GENCOMPS_GNU_mic_knl;PE_LIBSCI_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_LIBSCI_GENCOMPS_GNU_x86_64;PE_LIBSCI_GENCOMPS_INTEL_mic_knl=150 ;export PE_LIBSCI_GENCOMPS_INTEL_mic_knl;PE_LIBSCI_GENCOMPS_INTEL_x86_64=150 ;export PE_LIBSCI_GENCOMPS_INTEL_x86_64;PE_LIBSCI_GENCOMPS_PGI_x86_64=153 ;export PE_LIBSCI_GENCOMPS_PGI_x86_64;PE_LIBSCI_MODULE_NAME=cray-libsci/16.11.1 ;export PE_LIBSCI_MODULE_NAME;PE_LIBSCI_OMP_REQUIRES= ;export PE_LIBSCI_OMP_REQUIRES;PE_LIBSCI_OMP_REQUIRES_openmp=_mp ;export PE_LIBSCI_OMP_REQUIRES_openmp;PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci ;export PE_LIBSCI_PKGCONFIG_LIBS;PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ ;export PE_LIBSCI_PKGCONFIG_VARIABLES;PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH ;export PE_LIBSCI_REQUIRED_PRODUCTS;PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/libsci/16.11.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig ;export PE_LIBSCI_VOLATILE_PKGCONFIG_PATH;PE_LIBSCI_VOLATILE_PRGENV=CRAY\ GNU\ INTEL\ PGI ;export PE_LIBSCI_VOLATILE_PRGENV;PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx ;export PE_MPICH_CXX_PKGCONFIG_LIBS;PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 ;export PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64;PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64=64 ;export PE_MPICH_DEFAULT_DIR_PGI_DEFAULT64;PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL ;export PE_MPICH_DEFAULT_FIXED_PRGENV;PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.4 ;export PE_MPICH_DEFAULT_GENCOMPILERS_CRAY;PE_MPICH_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_MPICH_DEFAULT_GENCOMPILERS_GNU;PE_MPICH_DEFAULT_GENCOMPILERS_PGI=15.3 ;export PE_MPICH_DEFAULT_GENCOMPILERS_PGI;PE_MPICH_DEFAULT_GENCOMPS_CRAY=84 ;export PE_MPICH_DEFAULT_GENCOMPS_CRAY;PE_MPICH_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_MPICH_DEFAULT_GENCOMPS_GNU;PE_MPICH_DEFAULT_GENCOMPS_PGI=153 ;export PE_MPICH_DEFAULT_GENCOMPS_PGI;PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU\ PGI ;export PE_MPICH_DEFAULT_VOLATILE_PRGENV;PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 ;export PE_MPICH_FORTRAN_PKGCONFIG_LIBS;PE_MPICH_MODULE_NAME=cray-mpich ;export PE_MPICH_MODULE_NAME;PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt ;export PE_MPICH_MULTITHREADED_LIBS_multithreaded;PE_MPICH_NV_LIBS= ;export PE_MPICH_NV_LIBS;PE_MPICH_NV_LIBS_nvidia20=-lcudart ;export PE_MPICH_NV_LIBS_nvidia20;PE_MPICH_NV_LIBS_nvidia35=-lcudart ;export PE_MPICH_NV_LIBS_nvidia35;PE_MPICH_PKGCONFIG_LIBS=mpich ;export PE_MPICH_PKGCONFIG_LIBS;PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ ;export PE_MPICH_PKGCONFIG_VARIABLES;PE_MPICH_TARGET_VAR_nvidia20=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia20;PE_MPICH_TARGET_VAR_nvidia35=-lcudart ;export PE_MPICH_TARGET_VAR_nvidia35;PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_NETCDF_DEFAULT_FIXED_PRGENV;PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_NETCDF_DEFAULT_GENCOMPILERS_GNU;PE_NETCDF_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_NETCDF_DEFAULT_GENCOMPS_GNU;PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 ;export PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS;PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf/4.4.1/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_NETCDF_DEFAULT_VOLATILE_PRGENV;PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV;PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU;PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU;PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL:PE_MPICH ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS;PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/netcdf-hdf5parallel/4.4.1/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV;PE_PAPI_DEFAULT_ACCEL_LIBS= ;export PE_PAPI_DEFAULT_ACCEL_LIBS;PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda ;export PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35;PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ ;export PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES;PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda ;export PE_PAPI_DEFAULT_TARGET_VAR_nvidia35;PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY\ PGI\ INTEL ;export PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV;PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1\ 4.9 ;export PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU;PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=51\ 49 ;export PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU;PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig ;export PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU ;export PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_PETSC_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_PETSC_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_PETSC_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell;PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos;PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64;PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell;PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos;PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64;PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell;PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos;PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64;PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_PETSC_DEFAULT_GENCOMPS_PGI_interlagos;PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_PETSC_DEFAULT_GENCOMPS_PGI_x86_64;PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL ;export PE_PETSC_DEFAULT_REQUIRED_PRODUCTS;PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.7.2.1/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig ;export PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_PETSC_DEFAULT_VOLATILE_PRGENV;PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/parallel-netcdf/1.7.0/PGI/15.3/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.4.1/PGI/15.3/lib/pkgconfig:/opt/cray/netcdf/4.4.1/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5-parallel/1.10.0/PGI/15.3/lib/pkgconfig:/opt/cray/hdf5/1.10.0/PGI/15.3/lib/pkgconfig:/opt/cray/ga/5.3.0.7/PGI/15.3/lib/pkgconfig ;export PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH;PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI_ACC:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW:PE_ACML ;export PE_PKGCONFIG_DEFAULT_PRODUCTS;PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci:darshan-runtime:mpich ;export PE_PKGCONFIG_LIBS;PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:PE_MPICH ;export PE_PKGCONFIG_PRODUCTS;PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI ;export PE_PKGCONFIG_PRODUCTS_DEFAULT;PE_PKG_CONFIG_PATH=/opt/cray/cti/1.0.4/lib/pkgconfig ;export PE_PKG_CONFIG_PATH;PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:GNU:GCC:CRAYPE:CRAYPE_INTERLAGOS ;export PE_PRODUCT_LIST;PE_SMA_DEFAULT_COMPFLAG= ;export PE_SMA_DEFAULT_COMPFLAG;PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer ;export PE_SMA_DEFAULT_COMPFLAG_GNU;PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 ;export PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64;PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 ;export PE_SMA_DEFAULT_DIR_PGI_DEFAULT64;PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ ;export PE_SMA_DEFAULT_PKGCONFIG_VARIABLES;PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/mpt/7.5.0/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig ;export PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_TPSL_64_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64;PE_TPSL_64_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_TPSL_64_DEFAULT_GENCOMPS_PGI_interlagos;PE_TPSL_64_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_TPSL_64_DEFAULT_GENCOMPS_PGI_x86_64;PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS;PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/16.07.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_TPSL_64_DEFAULT_VOLATILE_PRGENV;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge;PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 ;export PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64;PE_TPSL_DEFAULT_GENCOMPILERS_PGI_interlagos=15.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_PGI_interlagos;PE_TPSL_DEFAULT_GENCOMPILERS_PGI_x86_64=15.3 ;export PE_TPSL_DEFAULT_GENCOMPILERS_PGI_x86_64;PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell;PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos;PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl=85 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl;PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 ;export PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell;PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos;PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64;PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell;PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos;PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge;PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=150 ;export PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64;PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos=153 ;export PE_TPSL_DEFAULT_GENCOMPS_PGI_interlagos;PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64=153 ;export PE_TPSL_DEFAULT_GENCOMPS_PGI_x86_64;PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI ;export PE_TPSL_DEFAULT_REQUIRED_PRODUCTS;PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/tpsl/16.07.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY\ CRAY64\ GNU\ GNU64\ INTEL\ INTEL64\ PGI\ PGI64 ;export PE_TPSL_DEFAULT_VOLATILE_PRGENV;PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.5 ;export PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64;PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1\ 4.9 ;export PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64;PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=85 ;export PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64;PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=51\ 49 ;export PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64;PE_TRILINOS_DEFAULmodule swap gcc gcc/4.9.3 module load boost module load cmake/3.1.3 module load fftw export CRAYPE_LINK_TYPE=dynamic export CRAY_ADD_RPATH=yes # install openbabel library cd $INSTDIR wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz --2018-01-22 10:35:37-- http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz Resolving downloads.sourceforge.net... 216.34.181.59 Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected. HTTP request sent, awaiting response... 302 Found Location: https://pilotfiber.dl.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz [following] --2018-01-22 10:35:37-- https://pilotfiber.dl.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz Resolving pilotfiber.dl.sourceforge.net... 69.12.26.12 Connecting to pilotfiber.dl.sourceforge.net|69.12.26.12|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 20509105 (20M) [application/x-gzip] Saving to: `openbabel-2.3.2.tar.gz.1' 0K .......... .......... .......... .......... .......... 0% 776K 26s 50K .......... .......... .......... .......... .......... 0% 1.10M 22s 100K .......... .......... .......... .......... .......... 0% 2.16M 17s 150K .......... .......... .......... .......... .......... 0% 2.19M 15s 200K .......... .......... .......... .......... .......... 1% 2.21M 14s 250K .......... .......... .......... .......... .......... 1% 2.22M 13s 300K .......... .......... .......... .......... .......... 1% 2.22M 12s 350K .......... .......... .......... .......... .......... 1% 2.26M 12s 400K .......... .......... .......... .......... .......... 2% 49.5M 11s 450K .......... .......... .......... .......... .......... 2% 2.27M 10s 500K .......... .......... .......... .......... .......... 2% 71.6M 9s 550K .......... .......... .......... .......... .......... 2% 2.29M 9s 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`openbabel-2.3.2.tar.gz.1' saved [20509105/20509105] tar zxvf openbabel-2.3.2.tar.gz T_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL ;export PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS;PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/trilinos/12.6.3.3/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig ;export PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH;PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY\ GNU ;export PE_TRILINOS_DEFAULT_VOLATILE_PRGENV;PKGCONFIG_ENABLED=1 ;export PKGCONFIG_ENABLED;PKG_CONFIG_PATH=/sw/xe/darshan/3.1.3/darshan-3.1.3/lib/pkgconfig:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/pkgconfig:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64/pkgconfig:/opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64/pkgconfig:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64/pkgconfig:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64/pkgconfig:/opt/cray/craype/2.5.8/pkg-config:/opt/cray/iobuf/2.0.7/lib/pkgconfig:/opt/cray/atp/2.0.4/lib/pkgconfig ;export PKG_CONFIG_PATH;PKG_CONFIG_PATH_DEFAULT=/opt/cray/papi/5.5.0.1/lib64/pkgconfig ;export PKG_CONFIG_PATH_DEFAULT;SHMEM_ABORT_ON_ERROR=1 ;export SHMEM_ABORT_ON_ERROR;XTOS_VERSION=5.2.82 ;export XTOS_VERSION;XTPE_NETWORK_TARGET=gemini ;export XTPE_NETWORK_TARGET;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82 ;export _LMFILES_;unset ASSEMBLER_X86_64;unset CC_X86_64;unset CRAYLIBS_X86_64;unset CRAYLMD_LICENSE_FILE;unset CRAY_BINUTILS_BIN;unset CRAY_BINUTILS_ROOT;unset CRAY_BINUTILS_VERSION;unset CRAY_CC_VERSION;unset CRAY_CXX_IPA_LIBS;unset CRAY_FTN_VERSION;unset CRAY_PE_TARGET;unset CRAY_PRGENVCRAY;unset FORTRAN_SYSTEM_MODULE_NAMES;unset FTN_X86_64;unset GCC_X86_64;unset INCLUDE_PATH_X86_64;unset LINKER_X86_64;unset NLSPATH;unset PE_LEVEL; ${MODULESHOME}/bin/modulecmd bash $* GCC_PATH=/opt/gcc/4.9.3 ;export GCC_PATH;GCC_VERSION=4.9.3 ;export GCC_VERSION;GNU_VERSION=4.9.3 ;export GNU_VERSION;INFOPATH=/opt/gcc/4.9.3/snos/share/info:/usr/local/info:/usr/share/info:/usr/info ;export INFOPATH;LD_LIBRARY_PATH=/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/3.1.3/darshan-3.1.3/lib:/usr/local/globus-5.2.5/lib64:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:gcc/4.9.3:craype-network-gemini:craype-interlagos:craype/2.5.8:cray-mpich/7.5.0:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:gnuplot/5.0.5:darshan/3.1.3:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-gnu/5.2.82 ;export LOADEDMODULES;MANPATH=/opt/cray/atp/2.0.4/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.11.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/EasyBuild/software/gnuplot/5.0.5/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t7/share/man/:/opt/torque/6.0.4/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/craype/2.5.8/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t7/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* BOOST_ROOT=/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2 ;export BOOST_ROOT;CRAY_BOOST_DIR=/sw/xe/boost/1.53.0 ;export CRAY_BOOST_DIR;CRAY_BOOST_INCLUDE_OPTS=-I/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/include ;export CRAY_BOOST_INCLUDE_OPTS;CRAY_BOOST_POST_LINK_OPTS=-L/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/lib ;export CRAY_BOOST_POST_LINK_OPTS;CRAY_BOOST_VERSION=1.53.0 ;export CRAY_BOOST_VERSION;LD_LIBRARY_PATH=/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2/lib:/opt/gcc/4.9.3/snos/lib64:/sw/xe/darshan/3.1.3/darshan-3.1.3/lib:/usr/local/globus-5.2.5/lib64:/usr/local/globus/lib64 ;export LD_LIBRARY_PATH;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:gcc/4.9.3:craype-network-gemini:craype-interlagos:craype/2.5.8:cray-mpich/7.5.0:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:gnuplot/5.0.5:darshan/3.1.3:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-gnu/5.2.82:boost/1.53.0 ;export LOADEDMODULES;PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:GNU:GCC:CRAYPE:CRAYPE_INTERLAGOS:CRAY_BOOST ;export PE_PRODUCT_LIST;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:gcc/4.9.3:craype-network-gemini:craype-interlagos:craype/2.5.8:cray-mpich/7.5.0:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:gnuplot/5.0.5:darshan/3.1.3:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3 ;export LOADEDMODULES;PATH=/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3 ;export _LMFILES_; ${MODULESHOME}/bin/modulecmd bash $* CRAY_FFTW_VERSION=3.3.4.10 ;export CRAY_FFTW_VERSION;CRAY_LD_LIBRARY_PATH=/opt/cray/fftw/3.3.4.10/interlagos/lib:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64:/opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/lib64:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64:/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib:/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib ;export CRAY_LD_LIBRARY_PATH;FFTW_DIR=/opt/cray/fftw/3.3.4.10/interlagos/lib ;export FFTW_DIR;FFTW_INC=/opt/cray/fftw/3.3.4.10/interlagos/include ;export FFTW_INC;FFTW_VERSION=3.3.4.10 ;export FFTW_VERSION;LOADEDMODULES=modules/3.2.10.4:eswrap/1.3.3-1.020200.1280.0:gcc/4.9.3:craype-network-gemini:craype-interlagos:craype/2.5.8:cray-mpich/7.5.0:torque/6.0.4:moab/9.0.2.TAS7-1490665589_71674cf-sles11:java/jdk1.8.0_51:globus/5.2.5:gsissh/6.2p2:xalt/0.7.6.local:scripts:user-paths:gnuplot/5.0.5:darshan/3.1.3:cray-libsci/16.11.1:udreg/2.3.2-1.0502.10518.2.17.gem:ugni/6.0-1.0502.10863.8.28.gem:pmi/5.0.10-1.0000.11050.179.3.gem:dmapp/7.0.1-1.0502.11080.8.74.gem:gni-headers/4.0-1.0502.10859.7.8.gem:xpmem/0.1-2.0502.64982.5.3.gem:dvs/2.5_0.9.0-1.0502.2188.1.113.gem:alps/5.2.4-2.0502.9774.31.12.gem:rca/1.0.0-2.0502.60530.1.63.gem:atp/2.0.4:PrgEnv-gnu/5.2.82:boost/1.53.0:cmake/3.1.3:fftw/3.3.4.10 ;export LOADEDMODULES;MANPATH=/opt/cray/fftw/3.3.4.10/share/man:/opt/cray/atp/2.0.4/man:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/man:/opt/cray/libsci/16.11.1/man:/opt/cray/man/csmlversion:/opt/gcc/4.9.3/snos/share/man:/sw/EasyBuild/software/gnuplot/5.0.5/share/man:/sw/user/man:/opt/java/jdk1.8.0_51/man:/usr/local/globus-5.2.5/man:/opt/moab/9.0.2t7/share/man/:/opt/torque/6.0.4/share/man:/opt/cray/mpt/7.5.0/gni/man/mpich:/opt/cray/craype/2.5.8/man:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/man:/opt/modules/3.2.10.4/share/man:/opt/moab/9.0.2t7/share/man::ignore:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/cm/local/apps/environment-modules/3.2.6/man:/opt/cray/man:/u/system/bwjenkins/man ;export MANPATH;PATH=/opt/cray/fftw/3.3.4.10/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin ;export PATH;PE_FFTW_OMP_REQUIRES=\ ;export PE_FFTW_OMP_REQUIRES;PE_FFTW_OMP_REQUIRES_openmp=_mp ;export PE_FFTW_OMP_REQUIRES_openmp;PE_FFTW_PKGCONFIG_LIBS=fftw3f_mpi:libfftw3f_threads:fftw3f:fftw3_mpi:libfftw3_threads:fftw3 ;export PE_FFTW_PKGCONFIG_LIBS;PE_FFTW_PKGCONFIG_VARIABLES=PE_FFTW_OMP_REQUIRES_@openmp@ ;export PE_FFTW_PKGCONFIG_VARIABLES;PE_FFTW_REQUIRED_PRODUCTS=PE_MPICH ;export PE_FFTW_REQUIRED_PRODUCTS;PE_FFTW_TARGET_abudhabi=abudhabi ;export PE_FFTW_TARGET_abudhabi;PE_FFTW_TARGET_broadwell=broadwell ;export PE_FFTW_TARGET_broadwell;PE_FFTW_TARGET_haswell=haswell ;export PE_FFTW_TARGET_haswell;PE_FFTW_TARGET_interlagos=interlagos ;export PE_FFTW_TARGET_interlagos;PE_FFTW_TARGET_ivybridge=ivybridge ;export PE_FFTW_TARGET_ivybridge;PE_FFTW_TARGET_mic_knl=mic_knl ;export PE_FFTW_TARGET_mic_knl;PE_FFTW_TARGET_sandybridge=sandybridge ;export PE_FFTW_TARGET_sandybridge;PE_FFTW_TARGET_share=share ;export PE_FFTW_TARGET_share;PE_FFTW_TARGET_x86_64=x86_64 ;export PE_FFTW_TARGET_x86_64;PE_FFTW_VOLATILE_PKGCONFIG_PATH=/opt/cray/fftw/3.3.4.10/@PE_FFTW_TARGET@/lib/pkgconfig ;export PE_FFTW_VOLATILE_PKGCONFIG_PATH;PE_PKGCONFIG_PRODUCTS=PE_FFTW:PE_LIBSCI:PE_MPICH ;export PE_PKGCONFIG_PRODUCTS;_LMFILES_=/opt/modulefiles/modules/3.2.10.4:/opt/modulefiles/eswrap/1.3.3-1.020200.1280.0:/opt/modulefiles/gcc/4.9.3:/opt/cray/craype/2.5.8/modulefiles/craype-network-gemini:/opt/cray/craype/2.5.8/modulefiles/craype-interlagos:/opt/cray/modulefiles/craype/2.5.8:/opt/cray/modulefiles/cray-mpich/7.5.0:/opt/modulefiles/torque/6.0.4:/opt/modulefiles/moab/9.0.2.TAS7-1490665589_71674cf-sles11:/opt/modulefiles/java/jdk1.8.0_51:/usr/local/modulefiles/globus/5.2.5:/usr/local/modulefiles/gsissh/6.2p2:/opt/modulefiles/xalt/0.7.6.local:/sw/xe/modulefiles/scripts:/sw/xe/modulefiles/user-paths:/sw/EasyBuild/modules/all/gnuplot/5.0.5:/sw/xe/modulefiles/darshan/3.1.3:/opt/cray/modulefiles/cray-libsci/16.11.1:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0502.10518.2.17.gem:/opt/cray/gem/modulefiles/ugni/6.0-1.0502.10863.8.28.gem:/opt/cray/gem/modulefiles/pmi/5.0.10-1.0000.11050.179.3.gem:/opt/cray/gem/modulefiles/dmapp/7.0.1-1.0502.11080.8.74.gem:/opt/cray/gem/modulefiles/gni-headers/4.0-1.0502.10859.7.8.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0502.64982.5.3.gem:/opt/cray/gem/modulefiles/dvs/2.5_0.9.0-1.0502.2188.1.113.gem:/opt/cray/gem/modulefiles/alps/5.2.4-2.0502.9774.31.12.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0502.60530.1.63.gem:/opt/cray/modulefiles/atp/2.0.4:/opt/cray/modulefiles/PrgEnv-gnu/5.2.82:/sw/xe/modulefiles/boost/1.53.0:/sw/xe/modulefiles/cmake/3.1.3:/opt/cray/modulefiles/fftw/3.3.4.10 ;export _LMFILES_; openbabel-2.3.2/ openbabel-2.3.2/AUTHORS openbabel-2.3.2/ChangeLog openbabel-2.3.2/ChangeLog.1.x openbabel-2.3.2/cmake/ openbabel-2.3.2/CMakeLists.txt openbabel-2.3.2/COPYING openbabel-2.3.2/CTestConfig.cmake openbabel-2.3.2/data/ openbabel-2.3.2/doc/ openbabel-2.3.2/Doxyfile openbabel-2.3.2/include/ openbabel-2.3.2/INSTALL openbabel-2.3.2/NEWS openbabel-2.3.2/openbabel-2.0.pc.cmake openbabel-2.3.2/OpenBabel2Config.cmake.in openbabel-2.3.2/OpenBabel2ConfigVersion.cmake.in openbabel-2.3.2/README openbabel-2.3.2/scripts/ openbabel-2.3.2/src/ openbabel-2.3.2/test/ openbabel-2.3.2/THANKS openbabel-2.3.2/tools/ openbabel-2.3.2/windows-vc2008/ openbabel-2.3.2/windows-vc2008/default_build.bat openbabel-2.3.2/windows-vc2008/Distribution/ openbabel-2.3.2/windows-vc2008/include/ openbabel-2.3.2/windows-vc2008/libs/ openbabel-2.3.2/windows-vc2008/minimal_build.bat openbabel-2.3.2/windows-vc2008/obdepict.bat openbabel-2.3.2/windows-vc2008/sdf.bat openbabel-2.3.2/windows-vc2008/x64_default_build.bat openbabel-2.3.2/windows-vc2008/libs/i386/ openbabel-2.3.2/windows-vc2008/libs/x64/ openbabel-2.3.2/windows-vc2008/libs/x64/env.bat openbabel-2.3.2/windows-vc2008/libs/x64/libiconv.dll openbabel-2.3.2/windows-vc2008/libs/x64/libinchi.dll openbabel-2.3.2/windows-vc2008/libs/x64/libinchi.lib openbabel-2.3.2/windows-vc2008/libs/x64/libxml2.dll openbabel-2.3.2/windows-vc2008/libs/x64/libxml2.lib openbabel-2.3.2/windows-vc2008/libs/x64/readme.txt openbabel-2.3.2/windows-vc2008/libs/x64/zlib1.dll openbabel-2.3.2/windows-vc2008/libs/x64/zlib1.lib openbabel-2.3.2/windows-vc2008/libs/i386/cairo.lib openbabel-2.3.2/windows-vc2008/libs/i386/env.bat openbabel-2.3.2/windows-vc2008/libs/i386/freetype6.dll openbabel-2.3.2/windows-vc2008/libs/i386/iconv.dll openbabel-2.3.2/windows-vc2008/libs/i386/libcairo-2.dll openbabel-2.3.2/windows-vc2008/libs/i386/libexpat-1.dll openbabel-2.3.2/windows-vc2008/libs/i386/libfontconfig-1.dll openbabel-2.3.2/windows-vc2008/libs/i386/libinchi.dll openbabel-2.3.2/windows-vc2008/libs/i386/libinchi.lib openbabel-2.3.2/windows-vc2008/libs/i386/libpng14-14.dll openbabel-2.3.2/windows-vc2008/libs/i386/libxml2.dll openbabel-2.3.2/windows-vc2008/libs/i386/libxml2.lib openbabel-2.3.2/windows-vc2008/libs/i386/readme.txt openbabel-2.3.2/windows-vc2008/libs/i386/xdr-0.dll openbabel-2.3.2/windows-vc2008/libs/i386/xdr.lib openbabel-2.3.2/windows-vc2008/libs/i386/zlib1.dll openbabel-2.3.2/windows-vc2008/libs/i386/zlib1.lib openbabel-2.3.2/windows-vc2008/include/cairo/ openbabel-2.3.2/windows-vc2008/include/inttypes.h openbabel-2.3.2/windows-vc2008/include/rpc/ openbabel-2.3.2/windows-vc2008/include/stdint.h openbabel-2.3.2/windows-vc2008/include/rpc/types.h openbabel-2.3.2/windows-vc2008/include/rpc/xdr.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-deprecated.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-features.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-ft.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-gobject.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-pdf.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-ps.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-script-interpreter.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-svg.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-version.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo-win32.h openbabel-2.3.2/windows-vc2008/include/cairo/cairo.h openbabel-2.3.2/windows-vc2008/Distribution/ExampleFiles/ openbabel-2.3.2/windows-vc2008/Distribution/logo_big.bmp openbabel-2.3.2/windows-vc2008/Distribution/logo_small.bmp openbabel-2.3.2/windows-vc2008/Distribution/NSISScriptToCreateInstaller.nsi openbabel-2.3.2/windows-vc2008/Distribution/obdotnet.snk openbabel-2.3.2/windows-vc2008/Distribution/OBDotNetAssemblyInfo.cs openbabel-2.3.2/windows-vc2008/Distribution/Python/ openbabel-2.3.2/windows-vc2008/Distribution/ToolsPrograms.txt openbabel-2.3.2/windows-vc2008/Distribution/Python/a_obpython.bat openbabel-2.3.2/windows-vc2008/Distribution/Python/b_obpython.bat openbabel-2.3.2/windows-vc2008/Distribution/Python/logo.bmp openbabel-2.3.2/windows-vc2008/Distribution/Python/setup.py openbabel-2.3.2/windows-vc2008/Distribution/ExampleFiles/150mols.smi openbabel-2.3.2/windows-vc2008/Distribution/ExampleFiles/FourSmallMols.cml openbabel-2.3.2/windows-vc2008/Distribution/ExampleFiles/oxamide.cml openbabel-2.3.2/windows-vc2008/Distribution/ExampleFiles/serotonin.mol openbabel-2.3.2/tools/babel.cpp openbabel-2.3.2/tools/CMakeLists.txt openbabel-2.3.2/tools/getopt.c openbabel-2.3.2/tools/getopt.h openbabel-2.3.2/tools/obabel.cpp openbabel-2.3.2/tools/obchiral.cpp openbabel-2.3.2/tools/obconformer.cpp openbabel-2.3.2/tools/obdoc.cpp openbabel-2.3.2/tools/obenergy.cpp openbabel-2.3.2/tools/obfit.cpp openbabel-2.3.2/tools/obfragment.cpp openbabel-2.3.2/tools/obgen.cpp openbabel-2.3.2/tools/obgrep.cpp openbabel-2.3.2/tools/obminimize.cpp openbabel-2.3.2/tools/obmm.cpp openbabel-2.3.2/tools/obprobe.cpp openbabel-2.3.2/tools/obprop.cpp openbabel-2.3.2/tools/obrms.cpp openbabel-2.3.2/tools/obrotamer.cpp openbabel-2.3.2/tools/obrotate.cpp openbabel-2.3.2/tools/obseq.cpp openbabel-2.3.2/tools/obspectrophore.cpp openbabel-2.3.2/tools/obsym.cpp openbabel-2.3.2/tools/obxyz.cpp openbabel-2.3.2/tools/README openbabel-2.3.2/tools/svgdepict.cpp openbabel-2.3.2/test/aligntest.cpp openbabel-2.3.2/test/aromatest.cpp openbabel-2.3.2/test/aromatic.pl openbabel-2.3.2/test/atom.cpp openbabel-2.3.2/test/automorphismtest.cpp openbabel-2.3.2/test/bond.cpp openbabel-2.3.2/test/buildertest.cpp openbabel-2.3.2/test/canonconsistenttest.cpp openbabel-2.3.2/test/canonstabletest.cpp openbabel-2.3.2/test/cansmi.cpp openbabel-2.3.2/test/cansmiles_shuffle.sh openbabel-2.3.2/test/charge-gasteiger.cpp openbabel-2.3.2/test/charge-mmff94.cpp openbabel-2.3.2/test/cistranstest.cpp openbabel-2.3.2/test/CMakeLists.txt openbabel-2.3.2/test/cml.sh openbabel-2.3.2/test/cmlreadfile.cpp openbabel-2.3.2/test/cmltest/ openbabel-2.3.2/test/conversion.cpp openbabel-2.3.2/test/datatest.cpp openbabel-2.3.2/test/ffgaff.cpp openbabel-2.3.2/test/ffghemical.cpp openbabel-2.3.2/test/ffmmff94.cpp openbabel-2.3.2/test/ffuff.cpp openbabel-2.3.2/test/files/ openbabel-2.3.2/test/formalcharge.cpp openbabel-2.3.2/test/format.cpp openbabel-2.3.2/test/formula.cpp openbabel-2.3.2/test/generate.sh openbabel-2.3.2/test/graphsymtest.cpp openbabel-2.3.2/test/implicitHtest.cpp openbabel-2.3.2/test/inchi/ openbabel-2.3.2/test/inchi.pl openbabel-2.3.2/test/inchi2.pl openbabel-2.3.2/test/inchiwrite.cpp openbabel-2.3.2/test/internalcoord.cpp openbabel-2.3.2/test/invalidsmarts.cpp openbabel-2.3.2/test/invalidsmiles.cpp openbabel-2.3.2/test/isomorphismtest.cpp openbabel-2.3.2/test/iterators.cpp openbabel-2.3.2/test/logp_psa.cpp openbabel-2.3.2/test/lssrtest.cpp openbabel-2.3.2/test/math.cpp openbabel-2.3.2/test/mmff94validate.cpp openbabel-2.3.2/test/mol.cpp openbabel-2.3.2/test/obbench.h openbabel-2.3.2/test/obmolbenchmark.cpp openbabel-2.3.2/test/obtest.h openbabel-2.3.2/test/phmodel.cpp openbabel-2.3.2/test/README openbabel-2.3.2/test/residue.cpp openbabel-2.3.2/test/ringtest.cpp openbabel-2.3.2/test/rotortest.cpp openbabel-2.3.2/test/roundtrip.cpp openbabel-2.3.2/test/shuffletest.cpp openbabel-2.3.2/test/smartsparse.cpp openbabel-2.3.2/test/smartstest.cpp openbabel-2.3.2/test/smilesmatch.cpp openbabel-2.3.2/test/smilestest.cpp openbabel-2.3.2/test/spectrophoretest.cpp openbabel-2.3.2/test/squareplanartest.cpp openbabel-2.3.2/test/stereoperceptiontest.cpp openbabel-2.3.2/test/stereotest.cpp openbabel-2.3.2/test/strip.cpp openbabel-2.3.2/test/test-set.sh openbabel-2.3.2/test/test_depiction.sh openbabel-2.3.2/test/test_pybel.py openbabel-2.3.2/test/testbabel.py openbabel-2.3.2/test/testbabel.pyc openbabel-2.3.2/test/testbindings.py openbabel-2.3.2/test/testbindings.pyc openbabel-2.3.2/test/testexample.py openbabel-2.3.2/test/testfastsearch.py openbabel-2.3.2/test/testkekule.py openbabel-2.3.2/test/testsym.py openbabel-2.3.2/test/testunique.py openbabel-2.3.2/test/tetrahedraltest.cpp openbabel-2.3.2/test/tetranonplanartest.cpp openbabel-2.3.2/test/tetraplanartest.cpp openbabel-2.3.2/test/uniqueidtest.cpp openbabel-2.3.2/test/unitcell.cpp openbabel-2.3.2/test/zipstream.cpp openbabel-2.3.2/test/inchi/Samples.sdf openbabel-2.3.2/test/inchi/Samples.sdf.txt openbabel-2.3.2/test/inchi/SamplesFail.txt openbabel-2.3.2/test/inchi/SamplesTechMan.sdf openbabel-2.3.2/test/inchi/SamplesTechMan.sdf.txt openbabel-2.3.2/test/inchi/SamplesTechManFail.txt openbabel-2.3.2/test/inchi/Steffen_PubChem.smi openbabel-2.3.2/test/inchi/Steffen_PubChem.smi.txt openbabel-2.3.2/test/files/1DRF.pdb openbabel-2.3.2/test/files/3d.head.2.cml openbabel-2.3.2/test/files/3G61.pdb openbabel-2.3.2/test/files/alias.mol openbabel-2.3.2/test/files/alias.png openbabel-2.3.2/test/files/aromatics.png openbabel-2.3.2/test/files/aromatics.smi openbabel-2.3.2/test/files/attype.00.smi openbabel-2.3.2/test/files/canonstable.can openbabel-2.3.2/test/files/cansmi-roundtrip.smi openbabel-2.3.2/test/files/cantest.sdf openbabel-2.3.2/test/files/CFGB09.CONFIG openbabel-2.3.2/test/files/CFGT27.CONFIG openbabel-2.3.2/test/files/charge-gasteiger.txt openbabel-2.3.2/test/files/charge-mmff94.txt openbabel-2.3.2/test/files/dipole-gasteiger.txt openbabel-2.3.2/test/files/dipole-mmff94.txt openbabel-2.3.2/test/files/filterset.sdf openbabel-2.3.2/test/files/forcefield.sdf openbabel-2.3.2/test/files/formalchargeresults.txt openbabel-2.3.2/test/files/formularesults.txt openbabel-2.3.2/test/files/FormulaTest.smi openbabel-2.3.2/test/files/gaff.sdf openbabel-2.3.2/test/files/gaffresults.txt openbabel-2.3.2/test/files/ghemicalresults.txt openbabel-2.3.2/test/files/hao_xu_1.mol openbabel-2.3.2/test/files/hao_xu_2.mol openbabel-2.3.2/test/files/hao_xu_3.mol openbabel-2.3.2/test/files/hao_xu_4.mol openbabel-2.3.2/test/files/hao_xu_5.mol openbabel-2.3.2/test/files/hao_xu_6.mol openbabel-2.3.2/test/files/hao_xu_7.mol openbabel-2.3.2/test/files/hao_xu_8.mol openbabel-2.3.2/test/files/hao_xu_9.mol openbabel-2.3.2/test/files/implicitH.sdf openbabel-2.3.2/test/files/invalid-smarts.txt openbabel-2.3.2/test/files/invalid-smiles.txt openbabel-2.3.2/test/files/isomorphism1.cml openbabel-2.3.2/test/files/mmff94results.txt openbabel-2.3.2/test/files/more-mmff94.sdf openbabel-2.3.2/test/files/more-mmff94results.txt openbabel-2.3.2/test/files/nci.smi openbabel-2.3.2/test/files/octane.cml openbabel-2.3.2/test/files/progesterone.sdf openbabel-2.3.2/test/files/random openbabel-2.3.2/test/files/random2 openbabel-2.3.2/test/files/random3 openbabel-2.3.2/test/files/ringresults.txt openbabel-2.3.2/test/files/rings/ openbabel-2.3.2/test/files/smartsresults.txt openbabel-2.3.2/test/files/smartstest.txt openbabel-2.3.2/test/files/stereo/ openbabel-2.3.2/test/files/stripresults.txt openbabel-2.3.2/test/files/test2d.xyz openbabel-2.3.2/test/files/test3d.xyz openbabel-2.3.2/test/files/testsym_2Dtests.sdf openbabel-2.3.2/test/files/testsym_2Dtests_more.sdf openbabel-2.3.2/test/files/testsym_2Dtests_threeligands.sdf openbabel-2.3.2/test/files/uffresults.txt openbabel-2.3.2/test/files/unitcell.txt openbabel-2.3.2/test/files/unitcell_results.txt openbabel-2.3.2/test/files/validsmarts.txt openbabel-2.3.2/test/files/ziptest.sdf.gz openbabel-2.3.2/test/files/stereo/adamantanediol.mol openbabel-2.3.2/test/files/stereo/canon1.mol openbabel-2.3.2/test/files/stereo/canon10.mol openbabel-2.3.2/test/files/stereo/canon11.mol openbabel-2.3.2/test/files/stereo/canon12.mol openbabel-2.3.2/test/files/stereo/canon13.mol openbabel-2.3.2/test/files/stereo/canon14.mol openbabel-2.3.2/test/files/stereo/canon15.mol openbabel-2.3.2/test/files/stereo/canon16.mol openbabel-2.3.2/test/files/stereo/canon17.mol openbabel-2.3.2/test/files/stereo/canon17a.mol openbabel-2.3.2/test/files/stereo/canon17b.mol openbabel-2.3.2/test/files/stereo/canon18.mol openbabel-2.3.2/test/files/stereo/canon19.mol openbabel-2.3.2/test/files/stereo/canon2.mol openbabel-2.3.2/test/files/stereo/canon20.mol openbabel-2.3.2/test/files/stereo/canon21.mol openbabel-2.3.2/test/files/stereo/canon22.mol openbabel-2.3.2/test/files/stereo/canon23.mol openbabel-2.3.2/test/files/stereo/canon24.mol openbabel-2.3.2/test/files/stereo/canon3.mol openbabel-2.3.2/test/files/stereo/canon4.mol openbabel-2.3.2/test/files/stereo/canon5.mol openbabel-2.3.2/test/files/stereo/canon6.mol openbabel-2.3.2/test/files/stereo/canon7.mol openbabel-2.3.2/test/files/stereo/canon8.mol openbabel-2.3.2/test/files/stereo/canon9.mol openbabel-2.3.2/test/files/stereo/canon_cistrans1.mol openbabel-2.3.2/test/files/stereo/canon_cistrans15.mol openbabel-2.3.2/test/files/stereo/canon_cistrans16.mol openbabel-2.3.2/test/files/stereo/canon_cistrans2.mol openbabel-2.3.2/test/files/stereo/canon_cistrans3.mol openbabel-2.3.2/test/files/stereo/canon_cistrans4.mol openbabel-2.3.2/test/files/stereo/canon_cistrans5.mol openbabel-2.3.2/test/files/stereo/canon_cistrans6.mol openbabel-2.3.2/test/files/stereo/canon_cistrans7.mol openbabel-2.3.2/test/files/stereo/canon_cistrans8.mol openbabel-2.3.2/test/files/stereo/canon_cistrans9.mol openbabel-2.3.2/test/files/stereo/cistrans2D_1.mol openbabel-2.3.2/test/files/stereo/cistrans2D_2.mol openbabel-2.3.2/test/files/stereo/cistrans3D_1.mol openbabel-2.3.2/test/files/stereo/cistrans3D_2.mol openbabel-2.3.2/test/files/stereo/cistrans3D_3.mol openbabel-2.3.2/test/files/stereo/cistrans3D_4.mol openbabel-2.3.2/test/files/stereo/cistrans3D_5.mol openbabel-2.3.2/test/files/stereo/complex2D_1.mol openbabel-2.3.2/test/files/stereo/complex2D_2.mol openbabel-2.3.2/test/files/stereo/complex2D_3.mol openbabel-2.3.2/test/files/stereo/complex2D_4a.mol openbabel-2.3.2/test/files/stereo/complex2D_4b.mol openbabel-2.3.2/test/files/stereo/complex2D_5a.mol 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openbabel-2.3.2/src/formats/smilesformat.cpp openbabel-2.3.2/src/formats/svgformat.cpp openbabel-2.3.2/src/formats/textformat.cpp openbabel-2.3.2/src/formats/thermoformat.cpp openbabel-2.3.2/src/formats/tinkerformat.cpp openbabel-2.3.2/src/formats/titleformat.cpp openbabel-2.3.2/src/formats/turbomoleformat.cpp openbabel-2.3.2/src/formats/unichemformat.cpp openbabel-2.3.2/src/formats/vaspformat.cpp openbabel-2.3.2/src/formats/viewmolformat.cpp openbabel-2.3.2/src/formats/xedformat.cpp openbabel-2.3.2/src/formats/xml/ openbabel-2.3.2/src/formats/xsfformat.cpp openbabel-2.3.2/src/formats/xtcformat.cpp openbabel-2.3.2/src/formats/xyzformat.cpp openbabel-2.3.2/src/formats/yasaraformat.cpp openbabel-2.3.2/src/formats/zindoformat.cpp openbabel-2.3.2/src/formats/xml/cdxmlformat.cpp openbabel-2.3.2/src/formats/xml/cmlformat.cpp openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp openbabel-2.3.2/src/formats/xml/iconv.h openbabel-2.3.2/src/formats/xml/pubchem.cpp openbabel-2.3.2/src/formats/xml/xml.cpp openbabel-2.3.2/src/formats/xml/xmlformat.cpp openbabel-2.3.2/src/formats/libinchi/CMakeLists.txt openbabel-2.3.2/src/formats/libinchi/ichi_bns.c openbabel-2.3.2/src/formats/libinchi/ichi_io.c openbabel-2.3.2/src/formats/libinchi/ichican2.c openbabel-2.3.2/src/formats/libinchi/ichicano.c openbabel-2.3.2/src/formats/libinchi/ichicans.c openbabel-2.3.2/src/formats/libinchi/ichiisot.c openbabel-2.3.2/src/formats/libinchi/ichilnct.c openbabel-2.3.2/src/formats/libinchi/ichimak2.c openbabel-2.3.2/src/formats/libinchi/ichimake.c openbabel-2.3.2/src/formats/libinchi/ichimap1.c openbabel-2.3.2/src/formats/libinchi/ichimap2.c openbabel-2.3.2/src/formats/libinchi/ichimap4.c openbabel-2.3.2/src/formats/libinchi/ichinorm.c openbabel-2.3.2/src/formats/libinchi/ichiparm.c openbabel-2.3.2/src/formats/libinchi/ichiprt1.c openbabel-2.3.2/src/formats/libinchi/ichiprt2.c openbabel-2.3.2/src/formats/libinchi/ichiprt3.c openbabel-2.3.2/src/formats/libinchi/ichiqueu.c openbabel-2.3.2/src/formats/libinchi/ichiread.c openbabel-2.3.2/src/formats/libinchi/ichiring.c openbabel-2.3.2/src/formats/libinchi/ichirvr1.c openbabel-2.3.2/src/formats/libinchi/ichirvr2.c openbabel-2.3.2/src/formats/libinchi/ichirvr3.c openbabel-2.3.2/src/formats/libinchi/ichirvr4.c openbabel-2.3.2/src/formats/libinchi/ichirvr5.c openbabel-2.3.2/src/formats/libinchi/ichirvr6.c openbabel-2.3.2/src/formats/libinchi/ichirvr7.c openbabel-2.3.2/src/formats/libinchi/ichisort.c openbabel-2.3.2/src/formats/libinchi/ichister.c openbabel-2.3.2/src/formats/libinchi/ichitaut.c openbabel-2.3.2/src/formats/libinchi/ikey_base26.c openbabel-2.3.2/src/formats/libinchi/ikey_dll.c openbabel-2.3.2/src/formats/libinchi/inchi_dll.c openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c openbabel-2.3.2/src/formats/libinchi/inchi_dll_main.c openbabel-2.3.2/src/formats/libinchi/runichi.c openbabel-2.3.2/src/formats/libinchi/sha2.c openbabel-2.3.2/src/formats/libinchi/strutil.c openbabel-2.3.2/src/formats/libinchi/util.c openbabel-2.3.2/src/forcefields/forcefieldgaff.cpp openbabel-2.3.2/src/forcefields/forcefieldgaff.h openbabel-2.3.2/src/forcefields/forcefieldghemical.cpp openbabel-2.3.2/src/forcefields/forcefieldghemical.h openbabel-2.3.2/src/forcefields/forcefieldmm2.cpp openbabel-2.3.2/src/forcefields/forcefieldmm2.h openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp openbabel-2.3.2/src/forcefields/forcefieldmmff94.h openbabel-2.3.2/src/forcefields/forcefielduff.cpp openbabel-2.3.2/src/forcefields/forcefielduff.h openbabel-2.3.2/src/fingerprints/finger2.cpp openbabel-2.3.2/src/fingerprints/finger3.cpp openbabel-2.3.2/src/descriptors/cansmidescriptor.cpp openbabel-2.3.2/src/descriptors/cmpdfilter.cpp openbabel-2.3.2/src/descriptors/filters.cpp openbabel-2.3.2/src/descriptors/groupcontrib.cpp openbabel-2.3.2/src/descriptors/inchidescriptor.cpp openbabel-2.3.2/src/descriptors/smartsdescriptors.cpp openbabel-2.3.2/src/depict/asciipainter.cpp openbabel-2.3.2/src/depict/cairopainter.cpp openbabel-2.3.2/src/depict/depict.cpp openbabel-2.3.2/src/depict/svgpainter.cpp openbabel-2.3.2/src/charges/eem.cpp openbabel-2.3.2/src/charges/gasteiger.cpp openbabel-2.3.2/src/charges/mmff94.cpp openbabel-2.3.2/src/charges/none.cpp openbabel-2.3.2/src/charges/qeq.cpp openbabel-2.3.2/src/charges/qeq.h openbabel-2.3.2/src/charges/qtpie.cpp openbabel-2.3.2/src/charges/qtpie.h openbabel-2.3.2/scripts/CMakeLists.txt openbabel-2.3.2/scripts/csharp/ openbabel-2.3.2/scripts/java/ openbabel-2.3.2/scripts/openbabel-csharp.i openbabel-2.3.2/scripts/openbabel-java.i openbabel-2.3.2/scripts/openbabel-mono.i openbabel-2.3.2/scripts/openbabel-perl.i openbabel-2.3.2/scripts/openbabel-python.i openbabel-2.3.2/scripts/openbabel-ruby.i openbabel-2.3.2/scripts/perl/ openbabel-2.3.2/scripts/python/ openbabel-2.3.2/scripts/ruby/ openbabel-2.3.2/scripts/stereo.i openbabel-2.3.2/scripts/ruby/examples/ 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openbabel-2.3.2/data/bin2hex.pl openbabel-2.3.2/data/bondtyp.h openbabel-2.3.2/data/bondtyp.txt openbabel-2.3.2/data/CMakeLists.txt openbabel-2.3.2/data/element.h openbabel-2.3.2/data/element.txt openbabel-2.3.2/data/fragments.txt openbabel-2.3.2/data/gaff.dat openbabel-2.3.2/data/gaff.prm openbabel-2.3.2/data/genheaders.sh openbabel-2.3.2/data/ghemical.prm openbabel-2.3.2/data/isotope-small.txt openbabel-2.3.2/data/isotope.h openbabel-2.3.2/data/isotope.txt openbabel-2.3.2/data/logp.txt openbabel-2.3.2/data/MACCS.txt openbabel-2.3.2/data/mm2.prm openbabel-2.3.2/data/mmff94.ff openbabel-2.3.2/data/mmff94s.ff openbabel-2.3.2/data/mmffang.par openbabel-2.3.2/data/mmffbndk.par openbabel-2.3.2/data/mmffbond.par openbabel-2.3.2/data/mmffchg.par openbabel-2.3.2/data/mmffdef.par openbabel-2.3.2/data/mmffdfsb.par openbabel-2.3.2/data/mmffoop.par openbabel-2.3.2/data/mmffpbci.par openbabel-2.3.2/data/mmffprop.par openbabel-2.3.2/data/mmffs_oop.par openbabel-2.3.2/data/mmffs_tor.par openbabel-2.3.2/data/mmffstbn.par openbabel-2.3.2/data/mmfftor.par openbabel-2.3.2/data/mmffvdw.par openbabel-2.3.2/data/mpC.txt openbabel-2.3.2/data/mr.txt openbabel-2.3.2/data/patterns.txt openbabel-2.3.2/data/phmodel.txt openbabel-2.3.2/data/phmodeldata.h openbabel-2.3.2/data/plugindefines.txt openbabel-2.3.2/data/psa.txt openbabel-2.3.2/data/qeq.txt openbabel-2.3.2/data/resdata.h openbabel-2.3.2/data/resdata.txt openbabel-2.3.2/data/ringtyp.txt openbabel-2.3.2/data/SMARTS_InteLigand.txt openbabel-2.3.2/data/space-groups.txt openbabel-2.3.2/data/space-groups.xsl openbabel-2.3.2/data/splash.png openbabel-2.3.2/data/superatom.txt openbabel-2.3.2/data/svgformat.script openbabel-2.3.2/data/templates.sdf openbabel-2.3.2/data/torlib.h openbabel-2.3.2/datacd openbabel-2.3.2/ mkdir build mkdir: cannot create directory `build': File exists cd build/ cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/openbabel-2.3.2/install .. /torlib.txt openbabel-2.3.2/data/types.h openbabel-2.3.2/data/types.txt openbabel-2.3.2/data/UFF.prm openbabel-2.3.2/cmake/modules/ openbabel-2.3.2/cmake/modules/FindCairo.cmake openbabel-2.3.2/cmake/modules/FindEigen2.cmake openbabel-2.3.2/cmake/modules/FindEigen3.cmake openbabel-2.3.2/cmake/modules/FindInchi.cmake openbabel-2.3.2/cmake/modules/MacroEnsureVersion.cmake openbabel-2.3.2/cmake/modules/UsePythonTest.cmake -- The C compiler identification is GNU 4.9.3 -- The CXX compiler identification is GNU 4.9.3 -- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /opt/cray/craype/2.5.8/bin/CC -- Check for working CXX compiler: /opt/cray/craype/2.5.8/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.7.6") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- checking for module 'cairo' -- found cairo, version 1.8.8 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets not found => GUI will not be built CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:171 (include): Syntax Warning in cmake code at /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:37 (FILE): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: ' SET(ENV{PYTHONPATH} ${pyenv}) SET(ENV{LD_LIBRARY_PATH} ${pyenv}:\$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} ${ob_libdir}) SET(ENV{BABEL_DATADIR} ${ob_datadir}) MESSAGE(\"${pyenv}\") EXECUTE_PROCESS( COMMAND ${PYTHON_EXECUTABLE} ${loc} ${wo_semicolumn} #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' the old evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testbabel.py #WORKING_DIRECTORY RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' but the new evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testbabel.py #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' Using the old result for compatibility since the policy is not set. Call Stack (most recent call first): test/CMakeLists.txt:182 (ADD_PYTHON_TEST) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:37 (FILE): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: ' SET(ENV{PYTHONPATH} ${pyenv}) SET(ENV{LD_LIBRARY_PATH} ${pyenv}:\$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} ${ob_libdir}) SET(ENV{BABEL_DATADIR} ${ob_datadir}) MESSAGE(\"${pyenv}\") EXECUTE_PROCESS( COMMAND ${PYTHON_EXECUTABLE} ${loc} ${wo_semicolumn} #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' the old evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testsym.py #WORKING_DIRECTORY RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' but the new evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testsym.py #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' Using the old result for compatibility since the policy is not set. Call Stack (most recent call first): test/CMakeLists.txt:182 (ADD_PYTHON_TEST) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:37 (FILE): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: ' SET(ENV{PYTHONPATH} ${pyenv}) SET(ENV{LD_LIBRARY_PATH} ${pyenv}:\$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} ${ob_libdir}) SET(ENV{BABEL_DATADIR} ${ob_datadir}) MESSAGE(\"${pyenv}\") EXECUTE_PROCESS( COMMAND ${PYTHON_EXECUTABLE} ${loc} ${wo_semicolumn} #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' the old evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testfastsearch.py #WORKING_DIRECTORY RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' but the new evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testfastsearch.py #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' Using the old result for compatibility since the policy is not set. Call Stack (most recent call first): test/CMakeLists.txt:182 (ADD_PYTHON_TEST) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:37 (FILE): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: ' SET(ENV{PYTHONPATH} ${pyenv}) SET(ENV{LD_LIBRARY_PATH} ${pyenv}:\$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} ${ob_libdir}) SET(ENV{BABEL_DATADIR} ${ob_datadir}) MESSAGE(\"${pyenv}\") EXECUTE_PROCESS( COMMAND ${PYTHON_EXECUTABLE} ${loc} ${wo_semicolumn} #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' the old evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testunique.py #WORKING_DIRECTORY RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' but the new evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testunique.py #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' Using the old result for compatibility since the policy is not set. Call Stack (most recent call first): test/CMakeLists.txt:182 (ADD_PYTHON_TEST) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:37 (FILE): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: ' SET(ENV{PYTHONPATH} ${pyenv}) SET(ENV{LD_LIBRARY_PATH} ${pyenv}:\$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} ${ob_libdir}) SET(ENV{BABEL_DATADIR} ${ob_datadir}) MESSAGE(\"${pyenv}\") EXECUTE_PROCESS( COMMAND ${PYTHON_EXECUTABLE} ${loc} ${wo_semicolumn} #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' the old evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testkekule.py #WORKING_DIRECTORY RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' but the new evaluation rules produce: ' SET(ENV{PYTHONPATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{LD_LIBRARY_PATH} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib:$ENV{LD_LIBRARY_PATH}) SET(ENV{BABEL_LIBDIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib) SET(ENV{BABEL_DATADIR} /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/data) MESSAGE("/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/scripts/python:/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/lib") EXECUTE_PROCESS( COMMAND /usr/bin/python /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/test/testkekule.py #WORKING_DIRECTORY @LIBRARY_OUTPUT_PATH@ RESULT_VARIABLE import_res OUTPUT_VARIABLE import_output ERROR_VARIABLE import_output ) # Pass the output back to ctest IF(import_output) MESSAGE(' Using the old result for compatibility since the policy is not set. Call Stack (most recent call first): test/CMakeLists.txt:182 (ADD_PYTHON_TEST) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python (found version "2.6.9") -- Configuring done -- Generating done nice make -j8 -- Build files have been written to: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build Scanning dependencies of target inchi [ 1%] [ 1%] [ 1%] [ 1%] [ 2%] [ 2%] [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o Scanning dependencies of target openbabel [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o [ 4%] 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CXX shared module ../lib/plugin_descriptors.so [ 41%] Built target plugin_charges [ 41%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o [ 41%] Built target PQSformat [ 41%] [ 41%] Built target MNAformat Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o [ 42%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o Scanning dependencies of target abinitformat [ 42%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o [ 42%] Built target plugin_descriptors [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o Scanning dependencies of target acesformat [ 44%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o Linking CXX shared module ../../lib/MCDLformat.so Scanning dependencies of target acrformat [ 44%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.o Linking CXX shared module ../../lib/abinitformat.so [ 44%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o [ 44%] Built target MCDLformat [ 44%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o Linking CXX shared module ../../lib/acrformat.so Linking CXX shared module ../../lib/acesformat.so [ 44%] Built target abinitformat [ 45%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o Scanning dependencies of target adfformat [ 45%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o Scanning dependencies of target alchemyformat [ 46%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o [ 46%] Built target acrformat [ 46%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o [ 46%] Built target acesformat [ 46%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o Scanning dependencies of target amberformat [ 46%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o Scanning dependencies of target asciiformat [ 46%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o [ 47%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o Linking CXX shared module ../../lib/alchemyformat.so Linking CXX shared module ../../lib/amberformat.so Scanning dependencies of target balstformat [ 47%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.o Linking CXX shared module ../../lib/asciiformat.so Scanning dependencies of target bgfformat [ 48%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.o [ 48%] Built target alchemyformat [ 49%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o Linking CXX shared module ../../lib/adfformat.so Linking CXX shared module ../lib/plugin_forcefields.so [ 49%] Built target amberformat [ 49%] Scanning dependencies of target boxformat Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o [ 49%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o [ 49%] Built target asciiformat Scanning dependencies of target cacaoformat [ 49%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o [ 49%] Built target adfformat Linking CXX shared module ../../lib/balstformat.so Scanning dependencies of target cacheformat Scanning dependencies of target carformat [ 50%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o [ 50%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o Linking CXX shared module ../../lib/bgfformat.so Linking CXX shared module ../lib/plugin_ops.so [ 50%] Built target plugin_forcefields Scanning dependencies of target castepformat [ 50%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o Linking CXX shared module ../../lib/boxformat.so [ 50%] Built target balstformat Scanning dependencies of target cccformat [ 50%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o Linking CXX shared module ../../lib/cacaoformat.so [ 50%] Built target bgfformat Linking CXX shared module ../../lib/cacheformat.so Linking CXX shared module ../../lib/carformat.so Scanning dependencies of target cdxmlformat [ 51%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o [ 51%] Built target plugin_ops [ 51%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o [ 51%] Built target boxformat Scanning dependencies of target chem3dformat [ 51%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o Linking CXX shared module ../../lib/cccformat.so [ 51%] Built target cacaoformat [ 51%] [ 51%] Built target carformat Built target cacheformat Linking CXX shared module ../../lib/castepformat.so Scanning dependencies of target chemdrawct Scanning dependencies of target chemdrawcdx [ 51%] [ 52%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o Scanning dependencies of target chemkinformat [ 52%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o Scanning dependencies of target chemtoolformat [ 53%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o [ 53%] Built target cccformat Scanning dependencies of target cifformat [ 53%] Built target castepformat [ 53%] Linking CXX shared module ../../lib/cdxmlformat.so Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o Linking CXX shared module ../../lib/chem3dformat.so Scanning dependencies of target cmlformat [ 53%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o Linking CXX shared module ../../lib/chemdrawct.so [ 53%] Built target cdxmlformat Linking CXX shared module ../../lib/chemtoolformat.so [ 54%] Built target chem3dformat [ 54%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o Scanning dependencies of target cmlreactformat [ 54%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o [ 54%] Built target chemdrawct [ 54%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o Linking CXX shared module ../../lib/chemdrawcdx.so [ 54%] Built target chemtoolformat Scanning dependencies of target copyformat [ 55%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o Linking CXX shared module ../../lib/chemkinformat.so [ 55%] Built target chemdrawcdx Scanning dependencies of target crkformat [ 55%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o Scanning dependencies of target crystal09format [ 55%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o Linking CXX shared module ../../lib/copyformat.so Scanning dependencies of target cssrformat [ 56%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o [ 56%] Built target chemkinformat Scanning dependencies of target dlpolyformat [ 56%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o [ 56%] Built target copyformat Scanning dependencies of target dmolformat [ 56%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o Linking CXX shared module ../../lib/cmlreactformat.so Linking CXX shared module ../../lib/crkformat.so Linking CXX shared module ../../lib/cssrformat.so Linking CXX shared module ../../lib/cifformat.so Linking CXX shared module ../../lib/crystal09format.so Linking CXX shared module ../../lib/cmlformat.so [ 56%] Built target crkformat [ 56%] Built target cssrformat [ 56%] Built target cmlreactformat Scanning dependencies of target fastaformat [ 56%] Scanning dependencies of target fastsearchformat Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o Scanning dependencies of target fchkformat Linking CXX shared module ../../lib/dmolformat.so [ 57%] [ 57%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o [ 57%] [ 57%] Built target cifformat Built target crystal09format Scanning dependencies of target fhformat Scanning dependencies of target featformat [ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o [ 58%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o [ 58%] Built target cmlformat Scanning dependencies of target fhiaimsformat Linking CXX shared module ../../lib/dlpolyformat.so [ 58%] [ 58%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o Built target dmolformat Scanning dependencies of target fingerprintformat [ 58%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o Linking CXX shared module ../../lib/fastaformat.so Linking CXX shared module ../../lib/featformat.so [ 58%] Built target dlpolyformat Linking CXX shared module ../../lib/fhformat.so Scanning dependencies of target fpsformat [ 59%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o Linking CXX shared module ../../lib/fhiaimsformat.so Linking CXX shared module ../../lib/fastsearchformat.so [ 59%] Built target fastaformat Scanning dependencies of target freefracformat [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o Linking CXX shared module ../../lib/fchkformat.so Linking CXX shared module ../../lib/fingerprintformat.so [ 59%] Built target featformat Scanning dependencies of target gamessformat [ 59%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o [ 59%] Built target fhformat Scanning dependencies of target gamessukformat [ 60%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o [ 60%] Built target fhiaimsformat [ 60%] Built target fastsearchformat Scanning dependencies of target gausscubeformat [ 60%] Scanning dependencies of target gaussformat Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o [ 60%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o [ 60%] Built target fingerprintformat Linking CXX shared module ../../lib/fpsformat.so [ 60%] Built target fchkformat Scanning dependencies of target gausszmatformat [ 61%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o Scanning dependencies of target ghemicalformat [ 61%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o Linking CXX shared module ../../lib/freefracformat.so [ 61%] Built target fpsformat Scanning dependencies of target groformat [ 61%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o [ 61%] Built target freefracformat Scanning dependencies of target gromos96format [ 62%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o Linking CXX shared module ../../lib/ghemicalformat.so Linking CXX shared module ../../lib/gausszmatformat.so [ 62%] Built target ghemicalformat Linking CXX shared module ../../lib/gromos96format.so Scanning dependencies of target gulpformat [ 62%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o [ 62%] Built target gausszmatformat Scanning dependencies of target hinformat [ 62%] Linking CXX shared module ../../lib/gausscubeformat.so Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o Linking CXX shared module ../../lib/gamessukformat.so Linking CXX shared module ../../lib/gamessformat.so Linking CXX shared module ../../lib/groformat.so [ 62%] Built target gromos96format Scanning dependencies of target inchiformat [ 62%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o Linking CXX shared module ../../lib/gaussformat.so [ 62%] Built target gausscubeformat [ 62%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o [ 62%] Built target gamessukformat Linking CXX shared module ../../lib/gulpformat.so [ 63%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o Linking CXX shared module ../../lib/hinformat.so [ 63%] Built target groformat [ 63%] Built target gamessformat Scanning dependencies of target jaguarformat [ 63%] Scanning dependencies of target lmpdatformat Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o [ 63%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o Scanning dependencies of target mdlformat [ 64%] [ 64%] Built target gaussformat Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o Scanning dependencies of target mmcifformat [ 64%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o [ 64%] Built target gulpformat Scanning dependencies of target mmodformat [ 64%] [ 64%] Built target hinformat Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o Scanning dependencies of target mol2format [ 65%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o Linking CXX shared module ../../lib/jaguarformat.so Scanning dependencies of target moldenformat [ 65%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o Linking CXX shared module ../../lib/inchiformat.so [ 65%] Built target jaguarformat Scanning dependencies of target molproformat [ 65%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o Linking CXX shared module ../../lib/mmodformat.so Linking CXX shared module ../../lib/lmpdatformat.so Linking CXX shared module ../../lib/mmcifformat.so Linking CXX shared module ../../lib/mol2format.so [ 65%] Built target inchiformat Scanning dependencies of target molreport [ 66%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o Linking CXX shared module ../../lib/moldenformat.so [ 66%] Built target mmodformat Scanning dependencies of target mopacformat [ 66%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o [ 66%] Built target lmpdatformat Scanning dependencies of target mpdformat [ 66%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o [ 66%] Built target mmcifformat [ 66%] Built target mol2format Scanning dependencies of target mpqcformat [ 67%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o Scanning dependencies of target msiformat [ 67%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o Linking CXX shared module ../../lib/molproformat.so [ 67%] Built target moldenformat Linking CXX shared module ../../lib/molreport.so Scanning dependencies of target msmsformat [ 67%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o Linking CXX shared module ../../lib/mdlformat.so Linking CXX shared module ../../lib/mpdformat.so [ 67%] Built target molproformat Scanning dependencies of target nulformat Linking CXX shared module ../../lib/mpqcformat.so [ 68%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o [ 68%] Built target molreport Linking CXX shared module ../../lib/msiformat.so Scanning dependencies of target nwchemformat [ 68%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o Linking CXX shared module ../../lib/msmsformat.so [ 68%] Built target mpdformat [ 68%] Built target mdlformat Scanning dependencies of target opendxformat [ 68%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o Linking CXX shared module ../../lib/nulformat.so Scanning dependencies of target outformat [ 69%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o Linking CXX shared module ../../lib/mopacformat.so [ 69%] Built target mpqcformat Scanning dependencies of target pcmodelformat [ 69%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o [ 69%] Built target msiformat Scanning dependencies of target pdbformat [ 69%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o [ 69%] Built target msmsformat Scanning dependencies of target pdbqtformat [ 69%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o [ 69%] Built target nulformat Scanning dependencies of target png2format [ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.o [ 69%] Built target mopacformat [ 70%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o Linking CXX shared module ../../lib/nwchemformat.so Linking CXX shared module ../../lib/outformat.so Linking CXX shared module ../../lib/opendxformat.so Linking CXX shared module ../../lib/pcmodelformat.so Scanning dependencies of target pngformat [ 70%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o [ 70%] [ 70%] Built target outformat Built target nwchemformat Scanning dependencies of target posformat [ 70%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o Scanning dependencies of target povrayformat [ 71%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o [ 71%] [ 71%] Built target pcmodelformat Built target opendxformat Scanning dependencies of target pqrformat [ 71%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o Linking CXX shared module ../../lib/png2format.so Scanning dependencies of target pubchem [ 71%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o Linking CXX shared module ../../lib/pdbformat.so Linking CXX shared module ../../lib/pngformat.so [ 71%] Built target png2format [ 71%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o Linking CXX shared module ../../lib/posformat.so Scanning dependencies of target pwscfformat [ 72%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o [ 72%] Built target pdbformat [ 72%] Built target pngformat Scanning dependencies of target qchemformat [ 72%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o Scanning dependencies of target reportformat [ 72%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o Linking CXX shared module ../../lib/pdbqtformat.so Linking CXX shared module ../../lib/povrayformat.so [ 72%] Built target posformat Linking CXX shared module ../../lib/pqrformat.so Scanning dependencies of target rsmiformat [ 72%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o Linking CXX shared module ../../lib/pubchem.so [ 72%] Built target pdbqtformat Scanning dependencies of target rxnformat [ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o Linking CXX shared module ../../lib/pwscfformat.so [ 72%] Built target povrayformat [ 72%] Built target pqrformat Linking CXX shared module ../../lib/reportformat.so Scanning dependencies of target shelxformat [ 73%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o Scanning dependencies of target smilesformat [ 73%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o [ 73%] Built target pubchem Scanning dependencies of target svgformat [ 73%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o Linking CXX shared module ../../lib/qchemformat.so [ 73%] Built target pwscfformat Scanning dependencies of target textformat Linking CXX shared module ../../lib/rsmiformat.so [ 74%] Built target reportformat [ 74%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o Scanning dependencies of target thermoformat [ 74%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o Linking CXX shared module ../../lib/shelxformat.so Linking CXX shared module ../../lib/rxnformat.so [ 74%] Built target qchemformat Scanning dependencies of target tinkerformat [ 74%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o Linking CXX shared module ../../lib/textformat.so [ 74%] Built target rsmiformat Scanning dependencies of target titleformat [ 75%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o Linking CXX shared module ../../lib/svgformat.so [ 75%] Built target shelxformat Scanning dependencies of target turbomoleformat [ 75%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o [ 75%] Built target rxnformat Scanning dependencies of target unichemformat [ 75%] Linking CXX shared module ../../lib/thermoformat.so Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o [ 75%] Built target textformat Scanning dependencies of target vaspformat [ 76%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o [ 76%] Built target svgformat Linking CXX shared module ../../lib/titleformat.so Scanning dependencies of target viewmolformat Linking CXX shared module ../../lib/tinkerformat.so [ 76%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o Linking CXX shared module ../../lib/turbomoleformat.so [ 76%] Built target thermoformat Scanning dependencies of target xedformat [ 76%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o Linking CXX shared module ../../lib/unichemformat.so [ 76%] Built target titleformat [ 76%] Built target tinkerformat Scanning dependencies of target xsfformat [ 76%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o Scanning dependencies of target xmlformat [ 77%] [ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o Built target turbomoleformat [ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o Linking CXX shared module ../../lib/viewmolformat.so [ 77%] Built target unichemformat Linking CXX shared module ../../lib/xedformat.so Scanning dependencies of target xtcformat [ 78%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.o [ 78%] Built target viewmolformat Scanning dependencies of target xyzformat [ 78%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o Scanning dependencies of target yasaraformat [ 78%] Linking CXX shared module ../../lib/xsfformat.so Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o Linking CXX shared module ../../lib/vaspformat.so [ 78%] Built target xedformat Linking CXX shared module ../../lib/xmlformat.so Scanning dependencies of target zindoformat [ 79%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o [ 79%] Built target xsfformat Scanning dependencies of target babel Linking CXX shared module ../../lib/smilesformat.so [ 79%] [ 79%] Building CXX object tools/CMakeFiles/babel.dir/babel.o Built target vaspformat Linking CXX shared module ../../lib/xtcformat.so Scanning dependencies of target obabel [ 79%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o [ 79%] Built target xmlformat Scanning dependencies of target obchiral [ 79%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o Linking 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Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_fingerprints.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_fingerprints.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_forcefields.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_forcefields.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_ops.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_ops.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/plugin_charges.so -- Set runtime path of 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"/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/textformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/titleformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/titleformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pngformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pngformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/acesformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/acesformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/abinitformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/abinitformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/adfformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/adfformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/castepformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/castepformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/crystal09format.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/crystal09format.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/dmolformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/dmolformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fchkformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fchkformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fhiaimsformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fhiaimsformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gamessformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gamessformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gaussformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gaussformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gausscubeformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gausscubeformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gausszmatformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gausszmatformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gulpformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gulpformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/hinformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/hinformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/jaguarformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/jaguarformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/molproformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/molproformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mopacformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mopacformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/nwchemformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/nwchemformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pwscfformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pwscfformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/qchemformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/qchemformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/turbomoleformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/turbomoleformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/vaspformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/vaspformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xsfformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xsfformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/zindoformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/zindoformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gamessukformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gamessukformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/APIInterface.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/APIInterface.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/CSRformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/CSRformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/PQSformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/PQSformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/MCDLformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/MCDLformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/alchemyformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/alchemyformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/acrformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/acrformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/amberformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/amberformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/balstformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/balstformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/bgfformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/bgfformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/boxformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/boxformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cacaoformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cacaoformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cacheformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cacheformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/carformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/carformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cccformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cccformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chem3dformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chem3dformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemdrawct.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemdrawct.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemtoolformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemtoolformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cifformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cifformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/crkformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/crkformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cssrformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cssrformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/dlpolyformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/dlpolyformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fastsearchformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fastsearchformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fastaformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fastaformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/featformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/featformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fhformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fhformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fingerprintformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fingerprintformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fpsformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/fpsformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/freefracformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/freefracformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/ghemicalformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/ghemicalformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gromos96format.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/gromos96format.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/groformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/groformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/lmpdatformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/lmpdatformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mmcifformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mmcifformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mmodformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mmodformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/moldenformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/moldenformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mpdformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mpdformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mpqcformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/mpqcformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/msiformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/msiformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/msmsformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/msmsformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/opendxformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/opendxformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/outformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/outformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pcmodelformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pcmodelformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pdbqtformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pdbqtformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/posformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/posformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pqrformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pqrformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/shelxformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/shelxformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/thermoformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/thermoformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/tinkerformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/tinkerformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/unichemformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/unichemformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/viewmolformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/viewmolformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xedformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xedformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xyzformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xyzformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/yasaraformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/yasaraformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/rxnformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/rxnformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemdrawcdx.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemdrawcdx.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemkinformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/chemkinformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/rsmiformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/rsmiformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xtcformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xtcformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/png2format.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/png2format.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cdxmlformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cdxmlformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cmlformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cmlformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pubchem.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/pubchem.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xmlformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/xmlformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cmlreactformat.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/openbabel/2.3.2/cmlreactformat.so" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/libinchi.so.0.4.1 -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/libinchi.so.0 -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/libinchi.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib/libinchi.so.0.4.1" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/babel -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/babel" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obabel -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obabel" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obchiral -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obchiral" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obconformer -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obconformer" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obenergy -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obenergy" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obfit -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obfit" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obgen -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obgen" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obminimize -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obminimize" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obprobe -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obprobe" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obprop -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obprop" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obrotamer -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obrotamer" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obrotate -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obrotate" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obspectrophore -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obspectrophore" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obgrep -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/obgrep" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/roundtrip export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib export CC=cc export CXX=CC export FC=ftn # install plplot library cd $INSTDIR git clone git://git.code.sf.net/p/plplot/plplot plplot.git fatal: destination path 'plplot.git' already exists and is not an empty directory. cd plplot.git/ mkdir build mkdir: cannot create directory `build': File exists cd build cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/plplot.git/install .. -- Set runtime path of "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/bin/roundtrip" to "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/install/lib" -- The C compiler identification is GNU 4.9.3 -- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- CMake version = 3.1.3 -- CMAKE_SYSTEM_NAME = Linux -- SH_EXECUTABLE = /bin/bash -- Checking whether system has ANSI C header files -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Performing Test memchrExists -- Performing Test memchrExists - Success -- Performing Test freeExists -- Performing Test freeExists - Success -- Check for whether ctype.h macros work on characters with the high bit set. -- High-bit characters - work -- ANSI C header files - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file termios.h -- Looking for include file termios.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for crt_externs.h -- Looking for crt_externs.h - not found -- Performing Test HAVE_SYS_WAIT_H -- Performing Test HAVE_SYS_WAIT_H - Success -- Looking for DIR symbol in sys/types.h;dirent.h -- Looking for DIR symbol in sys/types.h;dirent.h - found -- Check for signal return type in <signal.h> -- Check for signal handler return type type void - found -- Looking for popen -- Looking for popen - found -- Looking for usleep -- Looking for usleep - found -- Looking for nanosleep -- Looking for nanosleep - found -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for mkdtemp -- Looking for mkdtemp - found -- Looking for mkfifo -- Looking for mkfifo - found -- Looking for unlink -- Looking for unlink - found -- Looking for _NSGetArgc -- Looking for _NSGetArgc - not found -- Looking for isfinite -- Looking for isfinite - found -- Looking for finite -- Looking for finite - found -- Looking for isnan -- Looking for isnan - found -- Looking for isinf -- Looking for isinf - found -- Looking for snprintf -- Looking for snprintf - found -- SWIG_VERSION = 3.0.7 -- Found Perl: /usr/bin/perl (found version "5.10.0") -- WARNING: Perl module XML::DOM not found -- The CXX compiler identification is GNU 4.9.3 -- Check for working CXX compiler: /opt/cray/craype/2.5.8/bin/CC -- Check for working CXX compiler: /opt/cray/craype/2.5.8/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for using namespace support -- Check for using namespace - found -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Check for broken isnan support in <cmath> -- Check for isnan in <cmath> - found -- Check for using stdint.h with CXX compiler -- Check for using stdint.h with CXX compiler - ok -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- Looking for pkg-config - found -- cxx_compiler_library_pathname_list = /opt/cray/atp/2.0.4/libApp/libAtpSigHandler.so;/opt/cray/atp/2.0.4/libApp/libAtpSigHCommData.a;/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64/librca.so;/usr/lib64/libz.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f_mpi.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f_threads.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3f.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3_mpi.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3_threads.so;/opt/cray/fftw/3.3.4.10/interlagos/lib/libfftw3.so;/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib/libsci_gnu_49_mpi.so;/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib/libsci_gnu_49.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so;/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpichcxx_gnu_49.so;/opt/gcc/4.9.3/snos/lib64/libgfortran.so;/opt/gcc/4.9.3/snos/lib64/libquadmath.so;/usr/lib64/libm.so;/usr/lib64/libpthread.so;/opt/gcc/4.9.3/snos/lib64/libstdc++.so;/usr/lib64/libm.so;/usr/lib64/libc.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- X11_FOUND = 1 -- X11_INCLUDE_DIR = /usr/include -- X11_COMPILE_FLAGS = -I/usr/include -- X11_LIBRARIES = /usr/lib64/libSM.so;/usr/lib64/libICE.so;/usr/lib64/libX11.so;/usr/lib64/libXext.so -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /opt/cray/craype/2.5.8/bin/ftn -- Check for working Fortran compiler: /opt/cray/craype/2.5.8/bin/ftn -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /opt/cray/craype/2.5.8/bin/ftn supports Fortran 90 -- Checking whether /opt/cray/craype/2.5.8/bin/ftn supports Fortran 90 -- yes -- Check if isnan function is available in fortran -- Check for isnan in fortran - not found -- NOTICE: Found: /opt/cray/craype/2.5.8/bin/ftn -- Found JNI: /opt/java/jdk1.8.0_51/jre/lib/amd64/libjawt.so -- Found PythonInterp: /usr/bin/python (found version "2.6.9") -- Found PythonLibs: /usr/lib64/libpython2.6.so (found version "2.6.9") -- PYTHON_VERSION = 2.6.9 -- Building Python binding with plsmem() support -- WARNING: The octave command not found. Disabling Octave binding -- Start determining consistent system data for Tcl and friends -- Found Tclsh: /usr/bin/tclsh (found version "8.5") -- Found TCL: /usr/lib64/libtcl8.5.so -- Found TCLTK: /usr/lib64/libtcl8.5.so -- Found TK: /usr/lib64/libtk8.5.so can't find package Itcl 3 while executing "package require Itcl 3" invoked from within "puts -nonewline [package require Itcl 3]" (file "/u/system/bwjenkins/rmg-spp/plplot.git/build/CheckITCL_Available.tcl" line 1) Application initialization failed: no display name and no $DISPLAY environment variable Error in startup script: no display name and no $DISPLAY environment variable while executing "load /usr/lib64/tcl/tk8.5/../../libtk8.5.so Tk" ("package ifneeded Tk 8.5.5" script) invoked from within "package require Tk" invoked from within "puts -nonewline [package require Tk]" (file "/u/system/bwjenkins/rmg-spp/plplot.git/build/CheckTK_VERSION.tcl" line 1) -- Looking for Tcl - found -- TCL_INCLUDE_PATH = /usr/include -- TCL_LIBRARY = /usr/lib64/libtcl8.5.so -- TCL_STUB_LIBRARY = /usr/lib64/libtclstub8.5.a -- TCL_LIBRARY_PATH = /usr/lib64 -- Looking for tclsh - found -- TCL_TCLSH = /usr/bin/tclsh -- Looking for Tcl version with tclsh - found -- PLPLOT_TCL_VERSION = 8.5.5 -- Itcl not available or not compatible with current Tcl shell -- WARNING: Disabling Itcl interface code -- Looking for Tk - found -- TK_INCLUDE_PATH = /usr/include;/usr/include -- TK_LIBRARY = /usr/lib64/libtk8.5.so -- TK_STUB_LIBRARY = /usr/lib64/libtkstub8.5.a -- TK_LIBRARY_PATH = /usr/lib64 -- Looking for wish - found -- TK_WISH = /usr/bin/wish -- Looking for Tk version with wish - not found -- WARNING: setting ENABLE_tk to OFF -- WARNING: Because Tk is disabled must disable Itk as well -- Finished determining consistent system data for Tcl and friends -- A test cmake run with language = Ada enabled failed. -- Specify -DENABLE_compiler_diagnostics=ON to see full CMake diagnostics concerning this failure. -- WARNING: no working Ada compiler so disabling Ada binding and examples. Fonts not found - disabling freetype -- LUA_VERSION = 5.1 -- LUA_INCLUDE_DIR = LUA_INCLUDE_DIR-NOTFOUND -- LUA_LIBRARIES = -- Could NOT find Lua (missing: LUA_LIBRARIES LUA_INCLUDE_DIR) -- WARNING: Lua library and/or header not found. Disabling Lua binding -- A test cmake run with language = D enabled failed. -- Specify -DENABLE_compiler_diagnostics=ON to see full CMake diagnostics concerning this failure. -- WARNING: no working D compiler so disabling D binding and examples. -- WARNING: SHAPELIB not found. Setting HAVE_SHAPELIB to OFF. -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.3.7") -- FREETYPE_CFLAGS = -I/usr/include -I/usr/include/freetype2 -- FREETYPE_LIBRARIES = /usr/lib64/libfreetype.so -- Check for NaN awareness in C compiler -- Check for NaN awareness in C compiler - found -- Neither qhull/qhull_a.h header nor libqhull/qhull_a.h could be found -- qhull library could not be found -- Could NOT find QHULL (missing: QHULL_INCLUDE_DIRS QHULL_LIBRARIES QHULL_LIBRARY_DIRS) -- QHULL_INCLUDE_DIRS = -- QHULL_LIBRARIES = -- WARNING: at least one of QHULL_INCLUDE_DIRS or QHULL_LIBRARIES is false so setting PL_HAVE_QHULL to OFF. -- checking for module 'pango' -- found pango, version 1.26.2 -- checking for module 'pangoft2' -- found pangoft2, version 1.26.2 -- Found LTDL: /usr/lib64/libltdl.so -- LTDL_INCLUDE_DIR = /usr/include -- LTDL_LIBRARY_DIR = /usr/lib64 -- LTDL_LIBRARIES = /usr/lib64/libltdl.so -- checking for module 'pangocairo' -- found pangocairo, version 1.26.2 -- Not a Windows platform so setting wincairo driver to OFF. -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- WARNING: ENABLE_tk OFF. Therefore turning off tk, tkwin, and ntk devices includedir = libdir = linkflags = cflags = -- checking for modules 'lasi;pango;pangoft2' -- package 'lasi' not found -- WARNING: pango, pangoft2, or lasi not found with pkg-config. Setting PLD_psttf to OFF. Please install all of these packages and/or set the environment variable PKG_CONFIG_PATH appropriately. -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC CMake Warning at cmake/modules/qt.cmake:144 (find_package): By not providing "FindQt5.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "Qt5", but CMake did not find one. Could not find a package configuration file provided by "Qt5" (requested version 5.3.1) with any of the following names: Qt5Config.cmake qt5-config.cmake Add the installation prefix of "Qt5" to CMAKE_PREFIX_PATH or set "Qt5_DIR" to a directory containing one of the above files. If "Qt5" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake/modules/drivers.cmake:96 (include) cmake/modules/plplot.cmake:549 (include) CMakeLists.txt:135 (include) -- Looking for Q_WS_MAC - not found -- Could NOT find Qt4: Found unsuitable version "4.6.3", but required is at least "4.8.6" (found /usr/bin/qmake) -- WARNING: Suitable Qt4 development environment not found so trying Qt5 instead. -- WARNING: Suitable Qt5 development environment not found so disabling qt -- WARNING: ENABLE_qt is OFF so setting all qt devices to OFF. -- WARNING: PLPLOT_USE_QT5 is ON so setting ENABLE_pyqt4 to OFF. -- WARNING: PLD_extqt is OFF so setting ENABLE_pyqt5 to OFF. pc_libplplot_LINK_FLAGS = /usr/lib64/libltdl.so;/usr/lib64/libm.so;-lcsirocsa;-lqsastime -- wxWidgets_FOUND : FALSE -- wxWidgets_INCLUDE_DIRS : -- wxWidgets_LIBRARY_DIRS : -- wxWidgets_LIBRARIES : -- wxWidgets_CXX_FLAGS : -- wxWidgets_USE_FILE : UsewxWidgets -- WARNING: wxWidgets or its libraries not found so setting all wxwidgets devices to OFF. -- WARNING: PLD_wxwidgets is OFF so setting ENABLE_wxwidgets to OFF. -- WARNING: ENABLE_wxwidgets is OFF so setting all wxwidgets devices to OFF. -- Looking for haru pdf header and library -- Looking for haru pdf header and library - not found -- WARNING: Setting PLD_pdf to OFF. -- WARNING: The ocamlc application not found. Disabling OCaml binding -- WARNING: ENABLE_ocaml is OFF so disabling Plcairo module and lablgtk2 support -- WARNING: validate target will not be available to check for syntax issues in the PLplot DocBook documentation because onsgmls (or env) was not found. -- WARNING: Perl modules XML::Parser and/or XML::DOM not available so cannot check that swig_documentation.i is up to date. -- ENABLE_itcl: OFF -- Itcl libraries: plplot;/usr/lib64/libtcl8.5.so -- TEST_ENVIRONMENT = EXAMPLES_DIR=/u/system/bwjenkins/rmg-spp/plplot.git/build/examples SRC_EXAMPLES_DIR=/u/system/bwjenkins/rmg-spp/plplot.git/examples OUTPUT_DIR=/u/system/bwjenkins/rmg-spp/plplot.git/build/ctest_examples_output_dir VC_CTEST_DIRECTORY= -- Determine compile and link flags for extXdrawable_demo -- checking for module 'gtk+-x11-2.0' -- found gtk+-x11-2.0, version 2.18.9 -- Determine compile and link flags for ext-cairo-test -- checking for module 'cairo' -- found cairo, version 1.8.8 Summary of CMake build system results for PLplot Install location variables which can be set by the user: CMAKE_INSTALL_PREFIX: /u/system/bwjenkins/rmg-spp/plplot.git/install CMAKE_INSTALL_EXEC_PREFIX /u/system/bwjenkins/rmg-spp/plplot.git/install CMAKE_INSTALL_BINDIR /u/system/bwjenkins/rmg-spp/plplot.git/install/bin CMAKE_INSTALL_DATADIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share CMAKE_INSTALL_LIBDIR /u/system/bwjenkins/rmg-spp/plplot.git/install/lib CMAKE_INSTALL_INCLUDEDIR /u/system/bwjenkins/rmg-spp/plplot.git/install/include CMAKE_INSTALL_INFODIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/info CMAKE_INSTALL_MANDIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/man Derived install location variables: DATA_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0 LIB_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/lib INCLUDE_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot BIN_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/bin TCL_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/tcl ADA_INCLUDE_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/ada/adainclude/plplotada ADA_LIB_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/ada/adalib/plplotada PYTHON_INSTDIR /u/system/bwjenkins/rmg-spp/plplot.git/install/lib64/python2.6/site-packages DRV_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers DOC_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot MAN_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/man INFO_DIR /u/system/bwjenkins/rmg-spp/plplot.git/install/share/info Other important CMake variables: CMAKE_SYSTEM_NAME: Linux UNIX: 1 WIN32: APPLE: MSVC: (MSVC_VERSION: ) MINGW: MSYS: CYGWIN: BORLAND: WATCOM: SWIG_FOUND: 1 PERL_FOUND: TRUE X11_FOUND: 1 CMAKE_BUILD_TYPE: CMAKE_C_COMPILER CMAKE_C_FLAGS: /opt/cray/craype/2.5.8/bin/cc CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS: /opt/cray/craype/2.5.8/bin/CC CMAKE_Fortran_COMPILER CMAKE_Fortran_FLAGS: /opt/cray/craype/2.5.8/bin/ftn Target Fortran: PYTHON_EXECUTABLE: /usr/bin/python PYTHON_INCLUDE_PATH: /usr/include/python2.6 PYTHON_LIBRARIES: /usr/lib64/libpython2.6.so NUMPY_INCLUDE_PATH: /usr/lib64/python2.6/site-packages/numpy/core/include/numpy ENABLE_DYNDRIVERS: ON DRIVERS_LIST: cairo;mem;null;ps;svg;xfig;xwin DEVICES_LIST: memcairo;extcairo;pdfcairo;pngcairo;pscairo;epscairo;svgcairo;xcairo;mem;null;ps;svg;xfig;xwin Library options: BUILD_SHARED_LIBS: ON PL_DOUBLE: ON Optional libraries: PL_HAVE_QHULL: OFF WITH_CSA: ON PL_HAVE_FREETYPE: PL_HAVE_PTHREAD: ON HAVE_AGG: HAVE_SHAPELIB: OFF Language Bindings: ENABLE_ada: OFF ENABLE_cxx: ON ENABLE_d: OFF ENABLE_f95: ON ENABLE_java: ON ENABLE_lua: OFF ENABLE_ocaml: OFF ENABLE_octave: OFF ENABLE_pdl: OFF ENABLE_python: ON ENABLE_qt: OFF ENABLE_pyqt4: OFF ENABLE_pyqt5: OFF ENABLE_tcl: ON ENABLE_itcl: OFF ENABLE_tk: OFF ENABLE_itk: OFF ENABLE_wxwidgets: OFF -- Configuring done make -- Generating done -- Build files have been written to: /u/system/bwjenkins/rmg-spp/plplot.git/build Scanning dependencies of target csirocsa [ 0%] Building C object lib/csa/CMakeFiles/csirocsa.dir/csa.c.o Linking C shared library libcsirocsa.so [ 0%] Built target csirocsa Scanning dependencies of target deltaT-gen [ 0%] Building C object lib/qsastime/CMakeFiles/deltaT-gen.dir/deltaT-gen.c.o [ 1%] Building C object lib/qsastime/CMakeFiles/deltaT-gen.dir/dspline.c.o Linking C executable deltaT-gen [ 1%] Built target deltaT-gen Scanning dependencies of target deltaT.h_built [ 1%] Generating deltaT.h [ 1%] Built target deltaT.h_built Scanning dependencies of target tai-utc-gen [ 2%] Building C object lib/qsastime/CMakeFiles/tai-utc-gen.dir/tai-utc-gen.c.o Linking C executable tai-utc-gen [ 2%] Built target tai-utc-gen Scanning dependencies of target tai-utc.h_built [ 2%] Generating tai-utc.h [ 2%] Built target tai-utc.h_built Scanning dependencies of target qsastime [ 2%] Building C object lib/qsastime/CMakeFiles/qsastime.dir/qsastime.c.o [ 2%] Building C object lib/qsastime/CMakeFiles/qsastime.dir/dsplint.c.o Linking C shared library libqsastime.so [ 2%] Built target qsastime Scanning dependencies of target plhershey-unicode-gen [ 2%] Building C object include/CMakeFiles/plhershey-unicode-gen.dir/__/fonts/plhershey-unicode-gen.c.o Linking C executable plhershey-unicode-gen [ 2%] Built target plhershey-unicode-gen Scanning dependencies of target plhershey-unicode.h_built [ 3%] Generating plhershey-unicode.h [ 3%] Built target plhershey-unicode.h_built Scanning dependencies of target plplot [ 3%] Building C object src/CMakeFiles/plplot.dir/pdfutils.c.o [ 3%] Building C object src/CMakeFiles/plplot.dir/plmem.c.o [ 3%] Building C object src/CMakeFiles/plplot.dir/plaffine.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plarc.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plargs.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plbox.c.o [ 4%] Building C object src/CMakeFiles/plplot.dir/plcont.c.o [ 5%] Building C object src/CMakeFiles/plplot.dir/plcore.c.o [ 5%] Building C object src/CMakeFiles/plplot.dir/plctrl.c.o [ 5%] Building C object src/CMakeFiles/plplot.dir/plcvt.c.o [ 6%] Building C object src/CMakeFiles/plplot.dir/pldtik.c.o [ 6%] Building C object src/CMakeFiles/plplot.dir/plf2ops.c.o [ 6%] Building C object src/CMakeFiles/plplot.dir/plfill.c.o [ 6%] Building C object src/CMakeFiles/plplot.dir/plfreetype.c.o [ 7%] Building C object src/CMakeFiles/plplot.dir/plgradient.c.o [ 7%] Building C object src/CMakeFiles/plplot.dir/plhist.c.o [ 7%] Building C object src/CMakeFiles/plplot.dir/plimage.c.o [ 7%] Building C object src/CMakeFiles/plplot.dir/plline.c.o [ 8%] Building C object src/CMakeFiles/plplot.dir/plmetafile.c.o [ 8%] Building C object src/CMakeFiles/plplot.dir/plot3d.c.o [ 8%] Building C object src/CMakeFiles/plplot.dir/plpage.c.o [ 8%] Building C object src/CMakeFiles/plplot.dir/plsdef.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plshade.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plstdio.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plstripc.c.o [ 10%] Building C object src/CMakeFiles/plplot.dir/plsym.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/pltick.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plvpor.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plwind.c.o [ 11%] Building C object src/CMakeFiles/plplot.dir/plbuf.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/plgridd.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/plvect.c.o [ 12%] Building C object src/CMakeFiles/plplot.dir/mt19937ar.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/pltime.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/pllegend.c.o [ 13%] Building C object src/CMakeFiles/plplot.dir/plmap.c.o Linking C shared library libplplot.so [ 13%] Built target plplot Scanning dependencies of target concatenate_pkgIndex.tcl [ 13%] Generating pkgIndex.tcl [ 13%] Built target concatenate_pkgIndex.tcl Scanning dependencies of target plplotcxx [ 13%] Building CXX object bindings/c++/CMakeFiles/plplotcxx.dir/plstream.cc.o Linking CXX shared library libplplotcxx.so [ 13%] Built target plplotcxx Scanning dependencies of target plplotf95 [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_small_modules.f90.o [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_double.f90.o included_plplot_real_interfaces.f90:109.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plcont( z, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plcont' at (1) is marked PRIVATE but has been given the binding label 'c_plcont' included_plplot_real_interfaces.f90:133.8: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: function interface_plf2evalr( ix, iy, data ) bind(c, name = 'plf2evalr' ) 1 Warning: Symbol 'interface_plf2evalr' at (1) is marked PRIVATE but has been given the binding label 'plf2evalr' included_plplot_real_interfaces.f90:145.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfcont( lookup, grid, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plfcont' at (1) is marked PRIVATE but has been given the binding label 'plfcont' included_plplot_real_interfaces.f90:179.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfill( n, x, y ) bind( c, name='c_plfill') 1 Warning: Symbol 'interface_plfill' at (1) is marked PRIVATE but has been given the binding label 'c_plfill' included_plplot_real_interfaces.f90:189.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plfvect( lookup, fgrid1, fgrid2, nx, ny, scale, transform, data ) bind(c, name = 'plfvect' ) 1 Warning: Symbol 'interface_plfvect' at (1) is marked PRIVATE but has been given the binding label 'plfvect' included_plplot_real_interfaces.f90:222.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plimagefr( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr' at (1) is marked PRIVATE but has been given the binding label 'c_plimagefr' included_plplot_real_interfaces.f90:247.43: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plimagefr_null( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr_null' at (1) is marked PRIVATE but has been given the binding label 'plimagefr_null' included_plplot_real_interfaces.f90:261.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmap( proc, name, minx, maxx, miny, maxy ) & 1 Warning: Symbol 'interface_plmap' at (1) is marked PRIVATE but has been given the binding label 'c_plmap' included_plplot_real_interfaces.f90:273.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapfill( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapfill' at (1) is marked PRIVATE but has been given the binding label 'c_plmapfill' included_plplot_real_interfaces.f90:287.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapline( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapline' at (1) is marked PRIVATE but has been given the binding label 'c_plmapline' included_plplot_real_interfaces.f90:301.40: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmapstring( proc, name, string, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapstring' at (1) is marked PRIVATE but has been given the binding label 'c_plmapstring' included_plplot_real_interfaces.f90:315.37: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmaptex( proc, name, dx, dy, just, text, minx, maxx, miny, maxy, plotentry ) & 1 Warning: Symbol 'interface_plmaptex' at (1) is marked PRIVATE but has been given the binding label 'c_plmaptex' included_plplot_real_interfaces.f90:328.40: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plmeridians( proc, dlong, dlat, minlong, maxlong, minlat, maxlat ) & 1 Warning: Symbol 'interface_plmeridians' at (1) is marked PRIVATE but has been given the binding label 'c_plmeridians' included_plplot_real_interfaces.f90:339.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshade( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade' at (1) is marked PRIVATE but has been given the binding label 'c_plshade' included_plplot_real_interfaces.f90:376.41: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshade_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade_null' at (1) is marked PRIVATE but has been given the binding label 'plshade_null' included_plplot_real_interfaces.f90:402.37: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshades( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades' at (1) is marked PRIVATE but has been given the binding label 'c_plshades' included_plplot_real_interfaces.f90:438.42: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plshades_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades_null' at (1) is marked PRIVATE but has been given the binding label 'plshades_null' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:60.41: subroutine interface_plslabelfunc( proc, data ) bind(c, name = 'c_plslabelfunc' ) 1 Warning: Symbol 'interface_plslabelfunc' at (1) is marked PRIVATE but has been given the binding label 'c_plslabelfunc' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:69.41: subroutine interface_plstransform( proc, data ) bind(c, name = 'c_plstransform' ) 1 Warning: Symbol 'interface_plstransform' at (1) is marked PRIVATE but has been given the binding label 'c_plstransform' included_plplot_real_interfaces.f90:463.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr0( x, y, tx, ty, data ) bind(c, name = 'pltr0' ) 1 Warning: Symbol 'interface_pltr0' at (1) is marked PRIVATE but has been given the binding label 'pltr0' included_plplot_real_interfaces.f90:474.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr1( x, y, tx, ty, data ) bind(c, name = 'pltr1' ) 1 Warning: Symbol 'interface_pltr1' at (1) is marked PRIVATE but has been given the binding label 'pltr1' included_plplot_real_interfaces.f90:485.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_pltr2f( x, y, tx, ty, data ) bind(c, name = 'pltr2f' ) 1 Warning: Symbol 'interface_pltr2f' at (1) is marked PRIVATE but has been given the binding label 'pltr2f' included_plplot_real_interfaces.f90:497.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:117: subroutine interface_plvect( u, v, nx, ny, scale, transform, data ) bind(c, name = 'c_plvect' ) 1 Warning: Symbol 'interface_plvect' at (1) is marked PRIVATE but has been given the binding label 'c_plvect' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:202.27: subroutine pllabelerf2c( axis, value, label, length, data ) bind(c, name = 'plplot_double_private_pllabelerf2c') 1 Warning: Symbol 'pllabelerf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pllabelerf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:223.32: subroutine pllabelerf2c_data( axis, value, label, length, data ) bind(c, name = 'plplot_double_private_pllabelerf2c_data') 1 Warning: Symbol 'pllabelerf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pllabelerf2c_data' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:186.27: subroutine plmapformf2c( n, x, y ) bind(c, name = 'plplot_double_private_plmapformf2c') 1 Warning: Symbol 'plmapformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_plmapformf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:239.29: subroutine pltransformf2c( x, y, tx, ty, data ) bind(c, name = 'plplot_double_private_pltransformf2c') 1 Warning: Symbol 'pltransformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pltransformf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_double.f90:256.34: subroutine pltransformf2c_data( x, y, tx, ty, data ) bind(c, name = 'plplot_double_private_pltransformf2c_data') 1 Warning: Symbol 'pltransformf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_double_private_pltransformf2c_data' [ 13%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot_single.f90.o included_plplot_real_interfaces.f90:109.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plcont( z, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plcont' at (1) is marked PRIVATE but has been given the binding label 'c_plcont' included_plplot_real_interfaces.f90:133.8: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: function interface_plf2evalr( ix, iy, data ) bind(c, name = 'plf2evalr' ) 1 Warning: Symbol 'interface_plf2evalr' at (1) is marked PRIVATE but has been given the binding label 'plf2evalr' included_plplot_real_interfaces.f90:145.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfcont( lookup, grid, nx, ny, kx, lx, ky, ly, clevel, nlevel, transform, data ) & 1 Warning: Symbol 'interface_plfcont' at (1) is marked PRIVATE but has been given the binding label 'plfcont' included_plplot_real_interfaces.f90:179.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfill( n, x, y ) bind( c, name='c_plfill') 1 Warning: Symbol 'interface_plfill' at (1) is marked PRIVATE but has been given the binding label 'c_plfill' included_plplot_real_interfaces.f90:189.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plfvect( lookup, fgrid1, fgrid2, nx, ny, scale, transform, data ) bind(c, name = 'plfvect' ) 1 Warning: Symbol 'interface_plfvect' at (1) is marked PRIVATE but has been given the binding label 'plfvect' included_plplot_real_interfaces.f90:222.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plimagefr( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr' at (1) is marked PRIVATE but has been given the binding label 'c_plimagefr' included_plplot_real_interfaces.f90:247.43: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plimagefr_null( idata, nx, ny, & 1 Warning: Symbol 'interface_plimagefr_null' at (1) is marked PRIVATE but has been given the binding label 'plimagefr_null' included_plplot_real_interfaces.f90:261.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmap( proc, name, minx, maxx, miny, maxy ) & 1 Warning: Symbol 'interface_plmap' at (1) is marked PRIVATE but has been given the binding label 'c_plmap' included_plplot_real_interfaces.f90:273.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapfill( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapfill' at (1) is marked PRIVATE but has been given the binding label 'c_plmapfill' included_plplot_real_interfaces.f90:287.38: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapline( proc, name, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapline' at (1) is marked PRIVATE but has been given the binding label 'c_plmapline' included_plplot_real_interfaces.f90:301.40: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmapstring( proc, name, string, minx, maxx, miny, maxy, plotentries, nplotentries ) & 1 Warning: Symbol 'interface_plmapstring' at (1) is marked PRIVATE but has been given the binding label 'c_plmapstring' included_plplot_real_interfaces.f90:315.37: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmaptex( proc, name, dx, dy, just, text, minx, maxx, miny, maxy, plotentry ) & 1 Warning: Symbol 'interface_plmaptex' at (1) is marked PRIVATE but has been given the binding label 'c_plmaptex' included_plplot_real_interfaces.f90:328.40: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plmeridians( proc, dlong, dlat, minlong, maxlong, minlat, maxlat ) & 1 Warning: Symbol 'interface_plmeridians' at (1) is marked PRIVATE but has been given the binding label 'c_plmeridians' included_plplot_real_interfaces.f90:339.36: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshade( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade' at (1) is marked PRIVATE but has been given the binding label 'c_plshade' included_plplot_real_interfaces.f90:376.41: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshade_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshade_null' at (1) is marked PRIVATE but has been given the binding label 'plshade_null' included_plplot_real_interfaces.f90:402.37: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshades( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades' at (1) is marked PRIVATE but has been given the binding label 'c_plshades' included_plplot_real_interfaces.f90:438.42: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plshades_null( a, nx, ny, defined, xmin, xmax, ymin, ymax, & 1 Warning: Symbol 'interface_plshades_null' at (1) is marked PRIVATE but has been given the binding label 'plshades_null' included_plplot_real_interfaces.f90:463.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr0( x, y, tx, ty, data ) bind(c, name = 'pltr0' ) 1 Warning: Symbol 'interface_pltr0' at (1) is marked PRIVATE but has been given the binding label 'pltr0' included_plplot_real_interfaces.f90:474.34: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr1( x, y, tx, ty, data ) bind(c, name = 'pltr1' ) 1 Warning: Symbol 'interface_pltr1' at (1) is marked PRIVATE but has been given the binding label 'pltr1' included_plplot_real_interfaces.f90:485.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_pltr2f( x, y, tx, ty, data ) bind(c, name = 'pltr2f' ) 1 Warning: Symbol 'interface_pltr2f' at (1) is marked PRIVATE but has been given the binding label 'pltr2f' included_plplot_real_interfaces.f90:497.35: Included at /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:45: subroutine interface_plvect( u, v, nx, ny, scale, transform, data ) bind(c, name = 'c_plvect' ) 1 Warning: Symbol 'interface_plvect' at (1) is marked PRIVATE but has been given the binding label 'c_plvect' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:65.27: subroutine pllabelerf2c( axis, value, label, length, data ) bind(c, name = 'plplot_single_private_pllabelerf2c') 1 Warning: Symbol 'pllabelerf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pllabelerf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:86.32: subroutine pllabelerf2c_data( axis, value, label, length, data ) bind(c, name = 'plplot_single_private_pllabelerf2c_data') 1 Warning: Symbol 'pllabelerf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pllabelerf2c_data' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:49.27: subroutine plmapformf2c( n, x, y ) bind(c, name = 'plplot_single_private_plmapformf2c') 1 Warning: Symbol 'plmapformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_plmapformf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:102.29: subroutine pltransformf2c( x, y, tx, ty, data ) bind(c, name = 'plplot_single_private_pltransformf2c') 1 Warning: Symbol 'pltransformf2c' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pltransformf2c' /u/system/bwjenkins/rmg-spp/plplot.git/bindings/f95/plplot_single.f90:119.34: subroutine pltransformf2c_data( x, y, tx, ty, data ) bind(c, name = 'plplot_single_private_pltransformf2c_data') 1 Warning: Symbol 'pltransformf2c_data' at (1) is marked PRIVATE but has been given the binding label 'plplot_single_private_pltransformf2c_data' [ 14%] Building Fortran object bindings/f95/CMakeFiles/plplotf95.dir/plplot.f90.o Linking Fortran shared library libplplotf95.so [ 14%] Built target plplotf95 Scanning dependencies of target plplot.tcl_target [ 14%] Generating plplot.tcl [ 14%] Built target plplot.tcl_target Scanning dependencies of target tclmatrix [ 15%] Building C object bindings/tcl/CMakeFiles/tclmatrix.dir/tclMatrix.c.o [ 15%] Building C object bindings/tcl/CMakeFiles/tclmatrix.dir/matrixInit.c.o Linking C shared library libtclmatrix.so [ 15%] Built target tclmatrix [ 15%] Generating tclgen.h, tclgen_s.h, tclgen.c Scanning dependencies of target plplottcltk [ 15%] Building C object 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Install the project... -- Install configuration: "" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/ABOUT -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/AUTHORS -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/COPYING.LIB -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/ChangeLog.release -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/Copyright -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/FAQ -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/NEWS -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/PROBLEMS -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.release -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.cumulated_release -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.testing -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libcsirocsa.so.0.0.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libcsirocsa.so.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libcsirocsa.so -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.csa -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.1st.csa -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/qsastime.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/qsastimedll.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libqsastime.so.0.0.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libqsastime.so.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libqsastime.so -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/disptab.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/drivers.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/pdf.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/pldebug.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/pldll.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plevent.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plplot.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plplotP.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plstrm.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plxwd.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plConfig.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plDevs.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplot.so.14.0.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplot.so.14 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplot.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplot.so.14.0.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/cmake/plplot/export_plplot.cmake -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/cmake/plplot/export_plplot-noconfig.cmake -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/cmake/plplot/plplotConfig.cmake -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/pkgconfig/plplot.pc -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/plstnd5.fnt -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/plxtnd5.fnt -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap0_default.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap0_alternate.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap0_white_bg.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap0_black_on_white.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap1_default.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap1_blue_yellow.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap1_blue_red.pal -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/cmap1_gray.pal -- Installing: 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Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplotcxx.so.13.0.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/plstream.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/pkgconfig/plplot-c++.pc -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplotf95.so.13.0.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplotf95.so.13 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplotf95.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplotf95.so.13.0.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_double.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_single.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_private_utilities.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_graphics.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_private_exposed.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/fortran/modules/plplot/plplot_types.mod -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/pkgconfig/plplot-f95.pc -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/tclMatrix.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/include/plplot/pltcl.h -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libtclmatrix.so.10.3.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libtclmatrix.so.10 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libtclmatrix.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libtclmatrix.so.10.3.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk.so.13.0.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk.so.13 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk.so.13.0.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/pkgconfig/plplot-tcl.pc -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk_Main.so.1.0.0 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk_Main.so.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk_Main.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplottcltk_Main.so.1.0.0" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/tcl/plplot.tcl -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/tcl/tclIndex -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/pkgconfig/plplot-tcl_Main.pc -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/bin/pltcl -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/bin/pltcl" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib64/python2.6/site-packages/plplot.py -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib64/python2.6/site-packages/plplotc.py -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/jni/plplotjavac_wrap.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/jni/plplotjavac_wrap.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.drivers -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.wxwidgets -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/cairo.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/cairo.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/cairo.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/mem.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/mem.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/mem.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/null.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/null.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/null.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/ps.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/ps.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/ps.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/svg.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/svg.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/svg.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xfig.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xfig.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xfig.driver_info -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xwin.so -- Set runtime path of "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xwin.so" to "/u/system/bwjenkins/rmg-spp/plplot.git/install/lib" -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/plplot5.12.0/drivers/xwin.driver_info -- Installing: 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/u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x07 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x08 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x09 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x10 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x11 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x12 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x13 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x14 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x15 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x16 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x17 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x18 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x19 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x20 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x21 # install CPU-version of RMG cd $INSTDIR wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz --2018-01-22 10:46:27-- http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz Resolving downloads.sourceforge.net... 216.34.181.59 Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected. HTTP request sent, awaiting response... 302 Found Location: https://ayera.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz [following] --2018-01-22 10:46:27-- https://ayera.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz Resolving ayera.dl.sourceforge.net... 172.110.242.68, 2607:fa38:0:fe:6563:4fc1:ac91:ea86 Connecting to ayera.dl.sourceforge.net|172.110.242.68|:443... -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x22 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x23 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x24 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x25 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x26 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x27 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x28 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x29 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x30 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x31 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/x33 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/pltcl_standard_examples.in -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/tclsh_standard_examples.in -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/CMakeLists.txt -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/plplot5.12.0/examples/tcl/mktclIndex -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/man/man1/pltek.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/man/man1/plserver.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/man/man1/pltcl.1 -- Installing: /u/system/bwjenkins/rmg-spp/plplot.git/install/share/doc/plplot/README.pkg-config connected. 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75.3M 3s 12050K .......... .......... .......... .......... .......... 29% 62.2M 3s 12100K .......... .......... .......... .......... .......... 29% 86.5M 3s 12150K .......... .......... .......... .......... .......... 29% 77.0M 3s 12200K .......... .......... .......... .......... .......... 29% 60.5M 3s 12250K .......... .......... .......... .......... .......... 29% 72.4M 3s 12300K .......... .......... .......... .......... .......... 29% 35.9M 3s 12350K .......... .......... .......... .......... .......... 29% 51.7M 3s 12400K .......... .......... .......... .......... .......... 30% 89.9M 3s 12450K .......... .......... .......... .......... .......... 30% 89.2M 3s 12500K .......... .......... .......... .......... .......... 30% 2.38M 3s 12550K .......... .......... .......... .......... .......... 30% 89.4M 3s 12600K .......... .......... .......... .......... .......... 30% 86.8M 3s 12650K .......... .......... .......... .......... .......... 30% 88.4M 3s 12700K .......... .......... .......... .......... .......... 30% 89.0M 3s 12750K .......... .......... .......... .......... .......... 30% 62.1M 3s 12800K .......... .......... .......... .......... .......... 31% 89.5M 3s 12850K .......... .......... .......... .......... .......... 31% 88.5M 3s 12900K .......... .......... .......... .......... .......... 31% 88.8M 2s 12950K .......... .......... .......... .......... .......... 31% 93.3M 2s 13000K .......... .......... .......... .......... .......... 31% 87.0M 2s 13050K .......... .......... .......... .......... .......... 31% 81.5M 2s 13100K .......... .......... .......... .......... .......... 31% 93.6M 2s 13150K .......... .......... .......... .......... .......... 31% 75.8M 2s 13200K .......... .......... .......... .......... .......... 32% 101M 2s 13250K .......... .......... .......... .......... .......... 32% 3.65M 2s 13300K .......... .......... .......... .......... .......... 32% 69.6M 2s 13350K .......... .......... .......... .......... .......... 32% 66.0M 2s 13400K .......... .......... .......... .......... .......... 32% 82.5M 2s 13450K .......... .......... .......... .......... .......... 32% 55.8M 2s 13500K .......... .......... .......... .......... .......... 32% 85.2M 2s 13550K .......... .......... .......... .......... .......... 32% 51.8M 2s 13600K .......... .......... .......... .......... .......... 32% 78.0M 2s 13650K .......... .......... .......... .......... .......... 33% 84.9M 2s 13700K .......... .......... .......... .......... .......... 33% 71.4M 2s 13750K .......... .......... .......... .......... .......... 33% 65.0M 2s 13800K .......... .......... .......... .......... .......... 33% 80.0M 2s 13850K .......... .......... .......... .......... .......... 33% 78.1M 2s 13900K .......... .......... .......... .......... .......... 33% 73.1M 2s 13950K .......... .......... .......... .......... .......... 33% 55.1M 2s 14000K .......... .......... .......... .......... .......... 33% 57.0M 2s 14050K .......... .......... .......... .......... .......... 34% 79.4M 2s 14100K .......... .......... .......... .......... .......... 34% 89.3M 2s 14150K .......... .......... .......... .......... .......... 34% 67.0M 2s 14200K .......... .......... .......... .......... .......... 34% 71.9M 2s 14250K .......... .......... .......... .......... .......... 34% 77.7M 2s 14300K .......... .......... .......... .......... .......... 34% 81.4M 2s 14350K .......... .......... .......... .......... .......... 34% 52.7M 2s 14400K .......... .......... .......... .......... .......... 34% 68.9M 2s 14450K .......... .......... .......... .......... .......... 35% 77.2M 2s 14500K .......... .......... .......... .......... .......... 35% 74.1M 2s 14550K .......... .......... .......... .......... .......... 35% 68.7M 2s 14600K .......... .......... .......... .......... .......... 35% 83.9M 2s 14650K .......... .......... .......... .......... .......... 35% 78.4M 2s 14700K .......... .......... .......... .......... .......... 35% 74.3M 2s 14750K .......... .......... .......... .......... .......... 35% 43.8M 2s 14800K .......... .......... .......... .......... .......... 35% 79.9M 2s 14850K .......... .......... .......... .......... .......... 36% 78.4M 2s 14900K .......... .......... .......... .......... .......... 36% 67.4M 2s 14950K .......... .......... .......... .......... .......... 36% 71.5M 2s 15000K .......... .......... .......... .......... .......... 36% 77.9M 2s 15050K .......... .......... .......... .......... .......... 36% 60.2M 2s 15100K .......... .......... .......... .......... .......... 36% 72.3M 2s 15150K .......... .......... .......... .......... .......... 36% 53.9M 2s 15200K .......... .......... .......... .......... .......... 36% 70.7M 2s 15250K .......... .......... .......... .......... .......... 36% 65.6M 2s 15300K .......... .......... .......... .......... .......... 37% 75.5M 2s 15350K .......... .......... .......... .......... .......... 37% 73.4M 2s 15400K .......... .......... .......... .......... .......... 37% 74.9M 2s 15450K .......... .......... .......... .......... .......... 37% 71.9M 2s 15500K .......... .......... .......... .......... .......... 37% 62.8M 2s 15550K .......... .......... .......... .......... .......... 37% 47.9M 2s 15600K .......... .......... .......... .......... .......... 37% 64.3M 2s 15650K .......... .......... .......... .......... .......... 37% 88.7M 2s 15700K .......... .......... .......... .......... .......... 38% 89.8M 2s 15750K .......... .......... .......... .......... .......... 38% 90.9M 2s 15800K .......... .......... .......... .......... .......... 38% 89.4M 2s 15850K .......... .......... .......... .......... .......... 38% 79.9M 2s 15900K .......... .......... .......... .......... .......... 38% 88.8M 2s 15950K .......... .......... .......... .......... .......... 38% 10.9M 2s 16000K .......... .......... .......... .......... .......... 38% 87.4M 2s 16050K .......... .......... .......... .......... .......... 38% 91.3M 2s 16100K .......... .......... .......... .......... .......... 39% 52.0M 2s 16150K .......... .......... .......... .......... .......... 39% 45.4M 2s 16200K .......... .......... .......... .......... .......... 39% 87.4M 2s 16250K .......... .......... .......... .......... .......... 39% 74.8M 2s 16300K .......... .......... .......... .......... .......... 39% 88.5M 2s 16350K .......... .......... .......... .......... .......... 39% 62.1M 2s 16400K .......... .......... .......... .......... .......... 39% 78.3M 2s 16450K .......... .......... .......... .......... .......... 39% 82.2M 2s 16500K .......... .......... .......... .......... .......... 40% 72.7M 2s 16550K .......... .......... .......... .......... .......... 40% 70.9M 2s 16600K .......... .......... .......... .......... .......... 40% 88.8M 2s 16650K .......... .......... .......... .......... .......... 40% 88.0M 2s 16700K .......... .......... .......... .......... .......... 40% 54.3M 2s 16750K .......... .......... .......... .......... .......... 40% 57.2M 2s 16800K .......... .......... .......... .......... .......... 40% 54.6M 2s 16850K .......... .......... .......... .......... .......... 40% 47.3M 2s 16900K .......... .......... .......... .......... .......... 40% 80.6M 2s 16950K .......... .......... .......... .......... .......... 41% 46.2M 2s 17000K .......... .......... .......... .......... .......... 41% 89.7M 2s 17050K .......... .......... .......... .......... .......... 41% 73.1M 2s 17100K .......... .......... .......... .......... .......... 41% 86.4M 2s 17150K .......... .......... .......... .......... .......... 41% 57.2M 2s 17200K .......... .......... .......... .......... .......... 41% 87.6M 2s 17250K .......... .......... .......... .......... .......... 41% 89.4M 2s 17300K .......... .......... .......... .......... .......... 41% 84.9M 2s 17350K .......... .......... .......... .......... .......... 42% 92.0M 2s 17400K .......... .......... .......... .......... .......... 42% 91.5M 2s 17450K .......... .......... .......... .......... .......... 42% 82.3M 2s 17500K .......... .......... .......... .......... .......... 42% 89.5M 2s 17550K .......... .......... .......... .......... .......... 42% 66.7M 2s 17600K .......... .......... .......... .......... .......... 42% 88.3M 2s 17650K .......... .......... .......... .......... .......... 42% 86.2M 2s 17700K .......... .......... .......... .......... .......... 42% 78.1M 2s 17750K .......... .......... .......... .......... .......... 43% 53.6M 2s 17800K .......... .......... .......... .......... .......... 43% 59.5M 2s 17850K .......... .......... .......... .......... .......... 43% 90.4M 2s 17900K .......... .......... .......... .......... .......... 43% 87.0M 2s 17950K .......... .......... .......... .......... .......... 43% 68.8M 2s 18000K .......... .......... 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.......... 45% 89.6M 1s 18700K .......... .......... .......... .......... .......... 45% 94.6M 1s 18750K .......... .......... .......... .......... .......... 45% 60.7M 1s 18800K .......... .......... .......... .......... .......... 45% 84.9M 1s 18850K .......... .......... .......... .......... .......... 45% 90.3M 1s 18900K .......... .......... .......... .......... .......... 45% 88.2M 1s 18950K .......... .......... .......... .......... .......... 45% 88.8M 1s 19000K .......... .......... .......... .......... .......... 46% 83.5M 1s 19050K .......... .......... .......... .......... .......... 46% 90.0M 1s 19100K .......... .......... .......... .......... .......... 46% 88.2M 1s 19150K .......... .......... .......... .......... .......... 46% 68.8M 1s 19200K .......... .......... .......... .......... .......... 46% 89.4M 1s 19250K .......... .......... .......... .......... .......... 46% 91.0M 1s 19300K .......... .......... .......... .......... .......... 46% 90.6M 1s 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66.6M 1s 26000K .......... .......... .......... .......... .......... 62% 92.1M 1s 26050K .......... .......... .......... .......... .......... 63% 64.0M 1s 26100K .......... .......... .......... .......... .......... 63% 81.1M 1s 26150K .......... .......... .......... .......... .......... 63% 37.3M 1s 26200K .......... .......... .......... .......... .......... 63% 54.2M 1s 26250K .......... .......... .......... .......... .......... 63% 37.9M 1s 26300K .......... .......... .......... .......... .......... 63% 63.9M 1s 26350K .......... .......... .......... .......... .......... 63% 41.6M 1s 26400K .......... .......... .......... .......... .......... 63% 45.5M 1s 26450K .......... .......... .......... .......... .......... 64% 45.6M 1s 26500K .......... .......... .......... .......... .......... 64% 72.3M 1s 26550K .......... .......... .......... .......... .......... 64% 88.9M 1s 26600K .......... .......... .......... .......... .......... 64% 86.9M 1s 26650K .......... .......... .......... .......... .......... 64% 90.8M 1s 26700K .......... .......... .......... .......... .......... 64% 53.2M 1s 26750K .......... .......... .......... .......... .......... 64% 44.3M 1s 26800K .......... .......... .......... .......... .......... 64% 84.3M 1s 26850K .......... .......... .......... .......... .......... 65% 88.0M 1s 26900K .......... .......... .......... .......... .......... 65% 89.6M 1s 26950K .......... .......... .......... .......... .......... 65% 85.1M 1s 27000K .......... .......... .......... .......... .......... 65% 90.4M 1s 27050K .......... .......... .......... .......... .......... 65% 97.3M 1s 27100K .......... .......... .......... .......... .......... 65% 80.5M 1s 27150K .......... .......... .......... .......... .......... 65% 65.9M 1s 27200K .......... .......... .......... .......... .......... 65% 91.1M 1s 27250K .......... .......... .......... .......... .......... 65% 88.6M 1s 27300K .......... .......... .......... .......... .......... 66% 51.7M 1s 27350K .......... .......... .......... .......... .......... 66% 63.1M 1s 27400K .......... .......... .......... .......... .......... 66% 70.9M 1s 27450K .......... .......... .......... .......... .......... 66% 63.8M 1s 27500K .......... .......... .......... .......... .......... 66% 58.5M 1s 27550K .......... .......... .......... .......... .......... 66% 44.8M 1s 27600K .......... .......... .......... .......... .......... 66% 52.8M 1s 27650K .......... .......... .......... .......... .......... 66% 69.3M 1s 27700K .......... .......... .......... .......... .......... 67% 72.2M 1s 27750K .......... .......... .......... .......... .......... 67% 64.9M 1s 27800K .......... .......... .......... .......... .......... 67% 60.8M 1s 27850K .......... .......... .......... .......... .......... 67% 51.9M 1s 27900K .......... .......... .......... .......... .......... 67% 78.8M 1s 27950K .......... .......... .......... .......... .......... 67% 42.0M 1s 28000K .......... .......... .......... .......... .......... 67% 53.6M 1s 28050K .......... .......... .......... .......... .......... 67% 92.2M 1s 28100K .......... .......... .......... .......... .......... 68% 57.1M 1s 28150K .......... .......... .......... .......... .......... 68% 62.9M 1s 28200K .......... .......... .......... .......... .......... 68% 89.3M 1s 28250K .......... .......... .......... .......... .......... 68% 32.9M 1s 28300K .......... .......... .......... .......... .......... 68% 88.2M 1s 28350K .......... .......... .......... .......... .......... 68% 61.3M 1s 28400K .......... .......... .......... .......... .......... 68% 93.4M 1s 28450K .......... .......... .......... .......... .......... 68% 56.7M 1s 28500K .......... .......... .......... .......... .......... 69% 90.2M 1s 28550K .......... .......... .......... .......... .......... 69% 76.1M 1s 28600K .......... .......... .......... .......... .......... 69% 81.0M 1s 28650K .......... .......... .......... .......... .......... 69% 64.0M 1s 28700K .......... .......... .......... .......... .......... 69% 51.1M 1s 28750K .......... .......... .......... .......... .......... 69% 39.2M 1s 28800K .......... .......... .......... .......... .......... 69% 61.2M 1s 28850K .......... .......... .......... .......... .......... 69% 77.8M 1s 28900K .......... .......... .......... .......... .......... 69% 51.6M 1s 28950K .......... .......... .......... .......... .......... 70% 61.6M 1s 29000K .......... .......... .......... .......... .......... 70% 64.7M 1s 29050K .......... .......... .......... .......... .......... 70% 89.1M 1s 29100K .......... .......... .......... .......... .......... 70% 88.8M 1s 29150K .......... .......... .......... .......... .......... 70% 68.2M 1s 29200K .......... .......... .......... .......... .......... 70% 77.0M 1s 29250K .......... .......... .......... .......... .......... 70% 46.3M 1s 29300K .......... 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.......... .......... 72% 54.6M 1s 30000K .......... .......... .......... .......... .......... 72% 71.6M 1s 30050K .......... .......... .......... .......... .......... 72% 67.7M 1s 30100K .......... .......... .......... .......... .......... 72% 76.2M 1s 30150K .......... .......... .......... .......... .......... 72% 72.0M 1s 30200K .......... .......... .......... .......... .......... 73% 78.8M 1s 30250K .......... .......... .......... .......... .......... 73% 73.8M 1s 30300K .......... .......... .......... .......... .......... 73% 72.1M 1s 30350K .......... .......... .......... .......... .......... 73% 53.4M 1s 30400K .......... .......... .......... .......... .......... 73% 57.1M 1s 30450K .......... .......... .......... .......... .......... 73% 77.4M 1s 30500K .......... .......... .......... .......... .......... 73% 59.6M 1s 30550K .......... .......... .......... .......... .......... 73% 82.5M 1s 30600K .......... .......... .......... .......... .......... 74% 65.4M 1s 30650K .......... .......... .......... .......... .......... 74% 67.8M 1s 30700K .......... .......... .......... .......... .......... 74% 82.5M 1s 30750K .......... .......... .......... .......... .......... 74% 43.4M 1s 30800K .......... .......... .......... .......... .......... 74% 80.0M 1s 30850K .......... .......... .......... .......... .......... 74% 66.3M 1s 30900K .......... .......... .......... .......... .......... 74% 71.8M 1s 30950K .......... .......... .......... .......... .......... 74% 89.3M 0s 31000K .......... .......... .......... .......... .......... 75% 57.9M 0s 31050K .......... .......... .......... .......... .......... 75% 65.4M 0s 31100K .......... .......... .......... .......... .......... 75% 59.9M 0s 31150K .......... .......... .......... .......... .......... 75% 36.4M 0s 31200K .......... .......... .......... .......... .......... 75% 64.8M 0s 31250K .......... .......... .......... .......... .......... 75% 80.7M 0s 31300K 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/opt/cray/craype/2.5.8/bin/CC -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /opt/cray/craype/2.5.8/bin/cc -- Found MPI_CXX: /opt/cray/craype/2.5.8/bin/CC -- Found MPI_Fortran: /opt/cray/craype/2.5.8/bin/ftn -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Found PLPLOT: /u/system/bwjenkins/rmg-spp/plplot.git/install/lib/libplplot.so -- Performing Test USE_PLPLOT_LIBS_INTERNAL -- Performing Test USE_PLPLOT_LIBS_INTERNAL - Success -- Boost version: 1.53.0 -- Found the following Boost libraries: -- thread -- system -- iostreams -- program_options -- filesystem -- Found BZ2: /usr/lib64/libbz2.so -- Found Z: /usr/lib64/libz.so -- Performing Test CHECK_OPENBABEL_INTERNAL1 -- Performing Test CHECK_OPENBABEL_INTERNAL1 - Failed -- 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pfft-master/conf/travis-install-mpi.sh pfft-master/conf/.travis-install-mpi.sh.swp pfft-master/INSTALL pfft-master/configure pfft-master/api/ pfft-master/api/api-basic.c pfft-master/api/pfft.h pfft-master/api/pfft.f03.in pfft-master/api/pfftl.f03.in pfft-master/api/Makefile.am pfft-master/api/genf03-wrap.pl pfft-master/api/fortran-api.c pfft-master/api/Makefile.in pfft-master/api/fortran-mangling.h pfft-master/api/fortran-prototypes.h pfft-master/api/f03-wrap.sh pfft-master/api/build-f03-api.sh pfft-master/api/f03-api.sh pfft-master/api/f03-wrap.c pfft-master/api/fortran-wrappers.h pfft-master/api/pfft.f.in pfft-master/api/genf03-api.pl pfft-master/api/api-adv.c pfft-master/autom4te.cache/ pfft-master/autom4te.cache/output.1 pfft-master/autom4te.cache/traces.0 pfft-master/autom4te.cache/output.0 pfft-master/autom4te.cache/traces.1 pfft-master/autom4te.cache/requests pfft-master/ChangeLog configure: **************************************************************** configure: * Configuring in common/pfft * configure: **************************************************************** checking build system type... x86_64-suse-linux-gnu checking host system type... x86_64-pc-none checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-strip... no checking for strip... strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for x86_64-mpicc... /opt/cray/craype/2.5.8/bin/cc checking for x86_64-gcc... (cached) /opt/cray/craype/2.5.8/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/cray/craype/2.5.8/bin/cc accepts -g... yes checking for /opt/cray/craype/2.5.8/bin/cc option to accept ISO C89... none needed checking dependency style of /opt/cray/craype/2.5.8/bin/cc... gcc3 checking for function MPI_Init... yes checking for mpi.h... yes checking for /opt/cray/craype/2.5.8/bin/cc option to accept ISO C99... -std=gnu99 checking for inline... inline checking for x86_64-mpif95... /opt/cray/craype/2.5.8/bin/ftn checking for x86_64-gfortran... (cached) /opt/cray/craype/2.5.8/bin/ftn checking whether we are using the GNU Fortran compiler... yes checking whether /opt/cray/craype/2.5.8/bin/ftn accepts -g... yes checking for function MPI_INIT... yes checking for mpif.h... yes checking how to get verbose linking output from /opt/cray/craype/2.5.8/bin/ftn... -v checking for Fortran libraries of /opt/cray/craype/2.5.8/bin/ftn... -L/opt/cray/fftw/3.3.4.10/interlagos/lib -L/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib -L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L/opt/cray/atp/2.0.4/libApp -L/usr/local/lib -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lz -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lsci_gnu_49_mpi -lsci_gnu_49 -lmpich_gnu_49 -lmpichf90_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for alternate main to link with Fortran libraries... main checking for Fortran flag needed to accept 132 column source lines... -ffixed-line-length-none checking how to get verbose linking output from /opt/cray/craype/2.5.8/bin/ftn... (cached) -v checking for Fortran libraries of /opt/cray/craype/2.5.8/bin/ftn... (cached) -L/opt/cray/fftw/3.3.4.10/interlagos/lib -L/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib -L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L/opt/cray/atp/2.0.4/libApp -L/usr/local/lib -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lz -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lsci_gnu_49_mpi -lsci_gnu_49 -lmpich_gnu_49 -lmpichf90_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... none checking how to define symbols for preprocessed Fortran... -D checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... mod checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /opt/cray/craype/2.5.8/bin/cc -std=gnu99... /opt/xalt/0.7.6/sles11.3/bin/ld checking if the linker (/opt/xalt/0.7.6/sles11.3/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... no checking for x86_64-dumpbin... no checking for x86_64-link... no checking for dumpbin... no checking for link... link -dump checking the name lister (nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-suse-linux-gnu file names to x86_64-pc-none format... func_convert_file_noop checking how to convert x86_64-suse-linux-gnu file names to toolchain format... func_convert_file_noop checking for /opt/xalt/0.7.6/sles11.3/bin/ld option to reload object files... -r checking for x86_64-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for x86_64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-strip... strip checking for x86_64-ranlib... no checking for ranlib... ranlib checking command to parse nm output from /opt/cray/craype/2.5.8/bin/cc -std=gnu99 object... ok checking for sysroot... no checking for x86_64-mt... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /opt/cray/craype/2.5.8/bin/cc -std=gnu99 supports -fno-rtti -fno-exceptions... no checking for /opt/cray/craype/2.5.8/bin/cc -std=gnu99 option to produce PIC... -fPIC -DPIC checking if /opt/cray/craype/2.5.8/bin/cc -std=gnu99 PIC flag -fPIC -DPIC works... yes checking if /opt/cray/craype/2.5.8/bin/cc -std=gnu99 static flag -static works... yes checking if /opt/cray/craype/2.5.8/bin/cc -std=gnu99 supports -c -o file.o... yes checking if /opt/cray/craype/2.5.8/bin/cc -std=gnu99 supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.8/bin/cc -std=gnu99 linker (/opt/xalt/0.7.6/sles11.3/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /opt/cray/craype/2.5.8/bin/ftn option to produce PIC... -fPIC checking if /opt/cray/craype/2.5.8/bin/ftn PIC flag -fPIC works... yes checking if /opt/cray/craype/2.5.8/bin/ftn static flag -static works... yes checking if /opt/cray/craype/2.5.8/bin/ftn supports -c -o file.o... yes checking if /opt/cray/craype/2.5.8/bin/ftn supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.8/bin/ftn linker (/opt/xalt/0.7.6/sles11.3/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking for sincos in -lm... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking fftw3-mpi.h usability... yes checking fftw3-mpi.h presence... yes checking for fftw3-mpi.h... yes checking for fftw_execute in -lfftw3... yes checking for fftw_init_threads in -lfftw3_threads... yes checking for fftw_init_threads in -lfftw3_omp... no checking for fftw_mpi_init in -lfftw3_mpi... yes checking for C compiler vendor... gnu checking whether C compiler accepts -malign-double... yes checking whether C compiler accepts -fstrict-aliasing... yes checking whether C compiler accepts -ffast-math... yes checking for gcc architecture flag... checking for x86 cpuid 0 output... unknown checking for x86 cpuid 1 output... unknown checking whether C compiler accepts -march=native... yes checking for gcc architecture flag... -march=native checking whether C compiler accepts -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native... yes checking for ptrdiff_t... yes checking for long double... yes checking size of ptrdiff_t... 8 checking size of MPI_Fint... 4 checking for library containing log... none required checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for bibtex... /usr/bin/bibtex checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doc/latexinc.sh config.status: creating Makefile config.status: creating pfft.pc config.status: creating api/pfft.f config.status: creating api/pfft.f03 config.status: creating api/pfftl.f03 config.status: creating kernel/Makefile config.status: creating util/Makefile config.status: creating api/Makefile config.status: creating gcell/Makefile config.status: creating tests/Makefile config.status: creating tests/fortran/Makefile config.status: creating tests/f03/Makefile config.status: creating tests/openmp/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: creating fconfig.h config.status: linking /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/doc/latex-manual.sh to doc/latex-manual.sh config.status: linking /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/tests/build_checks.sh to tests/build_checks.sh config.status: linking /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/tests/run_checks.sh to tests/run_checks.sh config.status: linking /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/tests/manual_c2c_3d.c to tests/manual_c2c_3d.c config.status: executing depfiles commands config.status: executing libtool commands make: *** No targets specified and no makefile found. Stop. Making install in kernel make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/kernel' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT block.lo -MD -MP -MF .deps/block.Tpo -c -o block.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/block.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT block.lo -MD -MP -MF .deps/block.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/block.c -o block.o mv -f .deps/block.Tpo .deps/block.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT check.lo -MD -MP -MF .deps/check.Tpo -c -o check.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/check.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT check.lo -MD -MP -MF .deps/check.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/check.c -o check.o mv -f .deps/check.Tpo .deps/check.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c -o malloc.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/malloc.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/malloc.c -o malloc.o mv -f .deps/malloc.Tpo .deps/malloc.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT ousample.lo -MD -MP -MF .deps/ousample.Tpo -c -o ousample.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/ousample.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT ousample.lo -MD -MP -MF .deps/ousample.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/ousample.c -o ousample.o mv -f .deps/ousample.Tpo .deps/ousample.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT outrafo.lo -MD -MP -MF .deps/outrafo.Tpo -c -o outrafo.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/outrafo.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. 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-I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/timer.c -o timer.o mv -f .deps/timer.Tpo .deps/timer.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT transpose.lo -MD -MP -MF .deps/transpose.Tpo -c -o transpose.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel/transpose.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc 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malloc.o ousample.o outrafo.o partrafo-transposed.o partrafo.o sertrafo.o procmesh.o remap_3dto2d.o timer.o transpose.o libtool: link: ranlib .libs/libkernel.a libtool: link: ( cd ".libs" && rm -f "libkernel.la" && ln -s "../libkernel.la" "libkernel.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/kernel' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/kernel' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/kernel' Making install in gcell make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/gcell' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell -I.. 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-I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_RMA.lo -MD -MP -MF .deps/gcells_RMA.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell/gcells_RMA.c -o gcells_RMA.o mv -f .deps/gcells_RMA.Tpo .deps/gcells_RMA.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gcells_sendrecv.lo -MD -MP -MF .deps/gcells_sendrecv.Tpo -c -o gcells_sendrecv.lo 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-I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gctimer.lo -MD -MP -MF .deps/gctimer.Tpo -c -o gctimer.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell/gctimer.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT gctimer.lo -MD -MP -MF .deps/gctimer.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/gcell/gctimer.c -o gctimer.o mv -f .deps/gctimer.Tpo .deps/gctimer.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libgcell.la gcells_plan.lo gcells_RMA.lo gcells_sendrecv.lo gctimer.lo -lm libtool: link: ar cru .libs/libgcell.a gcells_plan.o gcells_RMA.o gcells_sendrecv.o gctimer.o libtool: link: ranlib .libs/libgcell.a libtool: link: ( cd ".libs" && rm -f "libgcell.la" && ln -s "../libgcell.la" "libgcell.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/gcell' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/gcell' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/gcell' Making install in util make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/util' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util/util.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT util.lo -MD -MP -MF .deps/util.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util/util.c -o util.o mv -f .deps/util.Tpo .deps/util.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT getargs.lo -MD -MP -MF .deps/getargs.Tpo -c -o getargs.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util/getargs.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT getargs.lo -MD -MP -MF .deps/getargs.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util/getargs.c -o getargs.o mv -f .deps/getargs.Tpo .deps/getargs.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libutil.la util.lo getargs.lo -lm libtool: link: ar cru .libs/libutil.a util.o getargs.o libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/util' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/util' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/util' Making install in api make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/api' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-basic.lo -MD -MP -MF .deps/api-basic.Tpo -c -o api-basic.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/api-basic.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-basic.lo -MD -MP -MF .deps/api-basic.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/api-basic.c -o api-basic.o mv -f .deps/api-basic.Tpo .deps/api-basic.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-adv.lo -MD -MP -MF .deps/api-adv.Tpo -c -o api-adv.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/api-adv.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT api-adv.lo -MD -MP -MF .deps/api-adv.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/api-adv.c -o api-adv.o mv -f .deps/api-adv.Tpo .deps/api-adv.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT fortran-api.lo -MD -MP -MF .deps/fortran-api.Tpo -c -o fortran-api.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/fortran-api.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT fortran-api.lo -MD -MP -MF .deps/fortran-api.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/fortran-api.c -o fortran-api.o mv -f .deps/fortran-api.Tpo .deps/fortran-api.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT f03-wrap.lo -MD -MP -MF .deps/f03-wrap.Tpo -c -o f03-wrap.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/f03-wrap.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/kernel -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/util -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -MT f03-wrap.lo -MD -MP -MF .deps/f03-wrap.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/f03-wrap.c -o f03-wrap.o mv -f .deps/f03-wrap.Tpo .deps/f03-wrap.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -o libapi.la api-basic.lo api-adv.lo fortran-api.lo f03-wrap.lo -lm libtool: link: ar cru .libs/libapi.a api-basic.o api-adv.o fortran-api.o f03-wrap.o libtool: link: ranlib .libs/libapi.a libtool: link: ( cd ".libs" && rm -f "libapi.la" && ln -s "../libapi.la" "libapi.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/api' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/include' /usr/bin/install -c -m 644 /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/api/pfft.h '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/include' /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/include' /usr/bin/install -c -m 644 pfft.f pfft.f03 pfftl.f03 '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/include' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/api' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/api' Making install in . make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64' /bin/sh ./libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -std=gnu99 -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -std=gnu99 -no-undefined -version-info 0:0:0 -o libpfft.la -rpath /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib kernel/libkernel.la util/libutil.la api/libapi.la gcell/libgcell.la -lm libtool: link: (cd .libs/libpfft.lax/libkernel.a && ar x "/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/kernel/.libs/libkernel.a") libtool: link: (cd .libs/libpfft.lax/libutil.a && ar x "/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/util/.libs/libutil.a") libtool: link: (cd .libs/libpfft.lax/libapi.a && ar x "/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/api/.libs/libapi.a") libtool: link: (cd .libs/libpfft.lax/libgcell.a && ar x "/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/gcell/.libs/libgcell.a") libtool: link: ar cru .libs/libpfft.a .libs/libpfft.lax/libkernel.a/block.o .libs/libpfft.lax/libkernel.a/check.o .libs/libpfft.lax/libkernel.a/malloc.o .libs/libpfft.lax/libkernel.a/ousample.o .libs/libpfft.lax/libkernel.a/outrafo.o .libs/libpfft.lax/libkernel.a/partrafo-transposed.o .libs/libpfft.lax/libkernel.a/partrafo.o .libs/libpfft.lax/libkernel.a/procmesh.o .libs/libpfft.lax/libkernel.a/remap_3dto2d.o .libs/libpfft.lax/libkernel.a/sertrafo.o .libs/libpfft.lax/libkernel.a/timer.o .libs/libpfft.lax/libkernel.a/transpose.o .libs/libpfft.lax/libutil.a/getargs.o .libs/libpfft.lax/libutil.a/util.o .libs/libpfft.lax/libapi.a/api-adv.o .libs/libpfft.lax/libapi.a/api-basic.o .libs/libpfft.lax/libapi.a/f03-wrap.o .libs/libpfft.lax/libapi.a/fortran-api.o .libs/libpfft.lax/libgcell.a/gcells_RMA.o .libs/libpfft.lax/libgcell.a/gcells_plan.o .libs/libpfft.lax/libgcell.a/gcells_sendrecv.o .libs/libpfft.lax/libgcell.a/gctimer.o libtool: link: ranlib .libs/libpfft.a libtool: link: rm -fr .libs/libpfft.lax libtool: link: ( cd ".libs" && rm -f "libpfft.la" && ln -s "../libpfft.la" "libpfft.la" ) make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64' /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libpfft.la '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib' libtool: install: /usr/bin/install -c .libs/libpfft.lai /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.la libtool: install: /usr/bin/install -c .libs/libpfft.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a libtool: install: chmod 644 /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a libtool: install: ranlib /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64' Making install in tests make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' Making install in fortran make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/fortran' Making install in f03 make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests/f03' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' make[3]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/tests' Making install in doc make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/doc' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/doc' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/doc' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/doc' -- Found PFFT: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/pfft-master/lib64/lib/libpfft.a -- Could NOT find LIBXC (missing: LIBXC_LIBRARIES LIBXC_INCLUDES) libxc-2.2.2/ libxc-2.2.2/COPYING libxc-2.2.2/ChangeLog libxc-2.2.2/build/ libxc-2.2.2/build/libxc.pc.in libxc-2.2.2/build/Makefile.in libxc-2.2.2/build/libxc.spec.in libxc-2.2.2/build/Makefile.am libxc-2.2.2/config.h.in libxc-2.2.2/m4/ libxc-2.2.2/m4/libtool.m4 libxc-2.2.2/m4/fortran.m4 libxc-2.2.2/m4/ac_prog_sed.m4 libxc-2.2.2/m4/lt~obsolete.m4 libxc-2.2.2/m4/ltsugar.m4 libxc-2.2.2/m4/fc_integer.m4 libxc-2.2.2/m4/ltoptions.m4 libxc-2.2.2/m4/ltversion.m4 libxc-2.2.2/m4/ax_f90_module_extension.m4 libxc-2.2.2/m4/fcflags.m4 libxc-2.2.2/missing libxc-2.2.2/aclocal.m4 libxc-2.2.2/xc_version.h libxc-2.2.2/NEWS libxc-2.2.2/AUTHORS libxc-2.2.2/config.sub libxc-2.2.2/configure.ac libxc-2.2.2/Makefile.in libxc-2.2.2/src/ libxc-2.2.2/src/mgga_x_mn12.c libxc-2.2.2/src/gga_xc_oblyp_d.c libxc-2.2.2/src/mgga_xc_otpss_d.c libxc-2.2.2/src/gga_x_htbs.c libxc-2.2.2/src/gga_x_wpbeh.c libxc-2.2.2/src/lda_c_rc04.c libxc-2.2.2/src/libxc_master.F90 libxc-2.2.2/src/gga_x_q2d.c libxc-2.2.2/src/gga_x_sogga11.c libxc-2.2.2/src/gga_c_tca.c libxc-2.2.2/src/gga_x_rpbe.c libxc-2.2.2/src/mgga_x_tpss.c libxc-2.2.2/src/hyb_gga_xc_hse.c libxc-2.2.2/src/mgga_c_cs.c libxc-2.2.2/src/lda_c_pz.c libxc-2.2.2/src/gga.c libxc-2.2.2/src/mgga_x_tau_hcth.c libxc-2.2.2/src/string_f.h libxc-2.2.2/src/lda_c_2d_prm.c libxc-2.2.2/src/gga_c_q2d.c libxc-2.2.2/src/mgga_x_br89.c libxc-2.2.2/src/lda_c_pw.c libxc-2.2.2/src/gga_x_pw91.c libxc-2.2.2/src/gga_x_hjs.c libxc-2.2.2/src/mgga_c_pkzb.c libxc-2.2.2/src/lda_c_wigner.c libxc-2.2.2/src/gga_k_ol2.c libxc-2.2.2/src/hyb_gga_xc_b97.c libxc-2.2.2/src/mgga_x_m05.c libxc-2.2.2/src/hyb_mgga_xc_tpssh.c libxc-2.2.2/src/mgga_x_pkzb.c libxc-2.2.2/src/mgga_x_m08.c libxc-2.2.2/src/work_gga_x.c libxc-2.2.2/src/gga_x_ak13.c libxc-2.2.2/src/bessel.c libxc-2.2.2/src/gga_xc_1w.c libxc-2.2.2/src/hyb_gga_xc_b1wc.c libxc-2.2.2/src/gga_x_lb.c libxc-2.2.2/src/gga_c_wl.c libxc-2.2.2/src/util.h libxc-2.2.2/src/gga_c_ft97.c libxc-2.2.2/src/lda_c_hl.c libxc-2.2.2/src/xc_f.c libxc-2.2.2/src/gga_x_g96.c libxc-2.2.2/src/mgga_x_m06l.c libxc-2.2.2/src/lda_c_gombas.c libxc-2.2.2/src/gga_c_p86.c libxc-2.2.2/src/gga_c_optc.c libxc-2.2.2/src/gga_x_herman.c libxc-2.2.2/src/gga_x_bayesian.c libxc-2.2.2/src/gga_k_tflw.c libxc-2.2.2/src/xc_config.h libxc-2.2.2/src/gga_x_pbea.c libxc-2.2.2/src/gga_xc_edf1.c libxc-2.2.2/src/gga_x_pbe.c libxc-2.2.2/src/mgga_x_gvt4.c libxc-2.2.2/src/gga_x_optx.c libxc-2.2.2/src/lda_c_ml1.c libxc-2.2.2/src/gga_x_pw86.c libxc-2.2.2/src/gga_c_wi.c libxc-2.2.2/src/util.c libxc-2.2.2/src/gga_x_wc.c libxc-2.2.2/src/lda.c libxc-2.2.2/src/gga_x_2d_b86.c libxc-2.2.2/src/mgga_c_m08.c libxc-2.2.2/src/gga_x_sfat.c libxc-2.2.2/src/gga_k_pearson.c libxc-2.2.2/src/lda_c_rpa.c libxc-2.2.2/src/lda_x_2d.c libxc-2.2.2/src/Makefile.in libxc-2.2.2/src/stoll.c libxc-2.2.2/src/gga_x_2d_pbe.c libxc-2.2.2/src/hyb_gga_xc_cam_b3lyp.c libxc-2.2.2/src/gga_c_op.c libxc-2.2.2/src/lda_c_1d_csc.c libxc-2.2.2/src/mgga_x_lta.c libxc-2.2.2/src/gga_k_meyer.c libxc-2.2.2/src/gga_x_vmt.c libxc-2.2.2/src/mgga_c_cc06.c libxc-2.2.2/src/gga_x_ssb_sw.c libxc-2.2.2/src/gga_x_am05.c libxc-2.2.2/src/xc_unconfig.h libxc-2.2.2/src/gga_x_2d_b88.c libxc-2.2.2/src/work_mgga_c.c libxc-2.2.2/src/special_functions.c libxc-2.2.2/src/lda_x_1d.c libxc-2.2.2/src/gga_x_airy.c libxc-2.2.2/src/mgga_x_2d_prhg07.c libxc-2.2.2/src/hyb_gga_xc_camy_blyp.c libxc-2.2.2/src/gga_x_kt.c libxc-2.2.2/src/gga_x_lg93.c libxc-2.2.2/src/version.c libxc-2.2.2/src/gga_x_c09x.c libxc-2.2.2/src/gga_x_b88.c libxc-2.2.2/src/gga_x_bpccac.c libxc-2.2.2/src/hyb_mgga_xc_m05.c libxc-2.2.2/src/gga_c_lm.c libxc-2.2.2/src/gga_x_n12.c libxc-2.2.2/src/gga_c_pw91.c libxc-2.2.2/src/work_lda.c libxc-2.2.2/src/gga_x_dk87.c libxc-2.2.2/src/work_mgga_x.c libxc-2.2.2/src/gga_xc_b97.c libxc-2.2.2/src/gga_xc_th.c libxc-2.2.2/src/mgga.c libxc-2.2.2/src/gga_x_mpbe.c libxc-2.2.2/src/lda_c_2d_amgb.c libxc-2.2.2/src/xc_s.h libxc-2.2.2/src/gga_x_ityh.c libxc-2.2.2/src/work_gga_c.c libxc-2.2.2/src/xc.h libxc-2.2.2/src/gga_x_2d_b86_mgc.c libxc-2.2.2/src/hyb_gga_xc_o3lyp.c libxc-2.2.2/src/functionals.c libxc-2.2.2/src/gga_x_ft97.c libxc-2.2.2/src/get_funcs.pl libxc-2.2.2/src/lda_xc_teter93.c libxc-2.2.2/src/xc-info.c libxc-2.2.2/src/gga_k_ol1.c libxc-2.2.2/src/gga_x_b86.c libxc-2.2.2/src/gga_x_b86_mgc.c libxc-2.2.2/src/lda_c_vwn.c libxc-2.2.2/src/gga_c_lyp.c libxc-2.2.2/src/mgga_c_vsxc.c libxc-2.2.2/src/lda_k_tf.c libxc-2.2.2/src/expint_e1.c libxc-2.2.2/src/integrate.c libxc-2.2.2/src/gga_c_am05.c libxc-2.2.2/src/gga_k_dk.c libxc-2.2.2/src/mgga_x_mk00.c libxc-2.2.2/src/mgga_x_ms.c libxc-2.2.2/src/hyb_gga_xc_pbeh.c libxc-2.2.2/src/mgga_c_bc95.c libxc-2.2.2/src/hyb_gga_xc_b3lyp.c libxc-2.2.2/src/lda_c_1d_loos.c libxc-2.2.2/src/mix_func.c libxc-2.2.2/src/gga_c_pbe.c libxc-2.2.2/src/Makefile.am libxc-2.2.2/src/gga_c_sogga11.c libxc-2.2.2/src/gga_x_lv_rpw86.c libxc-2.2.2/src/lda_x.c libxc-2.2.2/config.guess libxc-2.2.2/install-sh libxc-2.2.2/depcomp libxc-2.2.2/compile libxc-2.2.2/ltmain.sh libxc-2.2.2/PACKAGING libxc-2.2.2/TODO libxc-2.2.2/README libxc-2.2.2/xc_version.h.in libxc-2.2.2/configure libxc-2.2.2/testsuite/ libxc-2.2.2/testsuite/xc-consistency.c libxc-2.2.2/testsuite/xc-reference.pl libxc-2.2.2/testsuite/xc-run_testsuite libxc-2.2.2/testsuite/Makefile.in libxc-2.2.2/testsuite/xc-error.c libxc-2.2.2/testsuite/df_repo/ libxc-2.2.2/testsuite/df_repo/gga_xc_b97_1.data libxc-2.2.2/testsuite/df_repo/gga_c_pbe.data libxc-2.2.2/testsuite/df_repo/gga_c_lyp.data libxc-2.2.2/testsuite/df_repo/gga_xc_hcth_120.data libxc-2.2.2/testsuite/df_repo/gga_c_pw91.data libxc-2.2.2/testsuite/df_repo/lda_c_pw.data libxc-2.2.2/testsuite/df_repo/gga_xc_b97_2.data libxc-2.2.2/testsuite/df_repo/hyb_gga_xc_b3lyp.data libxc-2.2.2/testsuite/df_repo/gga_xc_hcth_93.data libxc-2.2.2/testsuite/df_repo/gga_x_pbe.data libxc-2.2.2/testsuite/df_repo/gga_x_b88.data libxc-2.2.2/testsuite/df_repo/lda_c_pz.data libxc-2.2.2/testsuite/df_repo/lda_c_vwn.data libxc-2.2.2/testsuite/df_repo/lda_x.data libxc-2.2.2/testsuite/df_repo/gga_x_ft97_b.data libxc-2.2.2/testsuite/df_repo/lda_c_vwn_rpa.data libxc-2.2.2/testsuite/df_repo/gga_xc_hcth_407.data libxc-2.2.2/testsuite/df_repo/gga_xc_b97.data libxc-2.2.2/testsuite/df_repo/gga_xc_edf1.data libxc-2.2.2/testsuite/df_repo/gga_x_pw91.data libxc-2.2.2/testsuite/df_repo/gga_c_p86.data libxc-2.2.2/testsuite/df_repo/gga_xc_hcth_147.data libxc-2.2.2/testsuite/xc-get_data.c libxc-2.2.2/testsuite/input/ libxc-2.2.2/testsuite/input/H libxc-2.2.2/testsuite/input/BrOH+ libxc-2.2.2/testsuite/input/Li libxc-2.2.2/testsuite/input/BrOH libxc-2.2.2/testsuite/input/README libxc-2.2.2/testsuite/xc-regression.c libxc-2.2.2/testsuite/regression/ libxc-2.2.2/testsuite/regression/lda_x.unpol.bz2 libxc-2.2.2/testsuite/regression/lda_x.pol.bz2 libxc-2.2.2/testsuite/Makefile.am libxc-2.2.2/INSTALL libxc-2.2.2/test-driver libxc-2.2.2/Makefile.am checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for a sed that does not truncate output... /usr/bin/sed checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... /opt/cray/craype/2.5.8/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/cray/craype/2.5.8/bin/cc accepts -g... yes checking for /opt/cray/craype/2.5.8/bin/cc option to accept ISO C89... none needed checking dependency style of /opt/cray/craype/2.5.8/bin/cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /opt/cray/craype/2.5.8/bin/cc... /opt/xalt/0.7.6/sles11.3/bin/ld checking if the linker (/opt/xalt/0.7.6/sles11.3/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /opt/xalt/0.7.6/sles11.3/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /opt/cray/craype/2.5.8/bin/cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /opt/cray/craype/2.5.8/bin/cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /opt/cray/craype/2.5.8/bin/cc supports -fno-rtti -fno-exceptions... no checking for /opt/cray/craype/2.5.8/bin/cc option to produce PIC... -fPIC -DPIC checking if /opt/cray/craype/2.5.8/bin/cc PIC flag -fPIC -DPIC works... yes checking if /opt/cray/craype/2.5.8/bin/cc static flag -static works... yes checking if /opt/cray/craype/2.5.8/bin/cc supports -c -o file.o... yes checking if /opt/cray/craype/2.5.8/bin/cc supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.8/bin/cc linker (/opt/xalt/0.7.6/sles11.3/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gcc... (cached) /opt/cray/craype/2.5.8/bin/cc checking whether we are using the GNU C compiler... (cached) yes checking whether /opt/cray/craype/2.5.8/bin/cc accepts -g... (cached) yes checking for /opt/cray/craype/2.5.8/bin/cc option to accept ISO C89... (cached) none needed checking dependency style of /opt/cray/craype/2.5.8/bin/cc... (cached) gcc3 checking whether /opt/cray/craype/2.5.8/bin/cc and cc understand -c and -o together... yes checking for inline... inline checking for ANSI C header files... (cached) yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking size of void*... 8 checking for sqrtf in -lm... yes checking for cbrt in -lm... yes checking for cbrtf in -lm... yes checking for feenableexcept in -lm... yes checking whether we are using the GNU Fortran compiler... yes checking whether /opt/cray/craype/2.5.8/bin/ftn accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /opt/cray/craype/2.5.8/bin/ftn option to produce PIC... -fPIC checking if /opt/cray/craype/2.5.8/bin/ftn PIC flag -fPIC works... yes checking if /opt/cray/craype/2.5.8/bin/ftn static flag -static works... yes checking if /opt/cray/craype/2.5.8/bin/ftn supports -c -o file.o... yes checking if /opt/cray/craype/2.5.8/bin/ftn supports -c -o file.o... (cached) yes checking whether the /opt/cray/craype/2.5.8/bin/ftn linker (/opt/xalt/0.7.6/sles11.3/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for Fortran flag to compile .f90 files... none configure: Using FCFLAGS="-O3" checking whether /lib/cpp is usable for Fortran preprocessing... preprocessor mangles C++ style comment checking whether /lib/cpp -ansi is usable for Fortran preprocessing... yes checking how to get verbose linking output from /opt/cray/craype/2.5.8/bin/ftn... -v checking for Fortran libraries of /opt/cray/craype/2.5.8/bin/ftn... -L/opt/cray/fftw/3.3.4.10/interlagos/lib -L/opt/cray/libsci/16.11.1/GNU/4.9/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib -L/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L/opt/cray/atp/2.0.4/libApp -L/usr/local/lib -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.9.3/snos/lib/gcc/x86_64-suse-linux/4.9.3/../../.. -lAtpSigHandler -lAtpSigHCommData -lrca -lz -lfftw3f_mpi -lfftw3f_threads -lfftw3f -lfftw3_mpi -lfftw3_threads -lfftw3 -lsci_gnu_49_mpi -lsci_gnu_49 -lmpich_gnu_49 -lmpichf90_gnu_49 -lgfortran -lquadmath -lpthread -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether the compiler accepts very long lines... no checking whether the compiler accepts "line-number" lines cast by the preprocessor... yes checking fortran 90 modules extension... mod checking for the size of a Fortran integer... 4 bytes checking for which C type corresponds to Fortran integer... int checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating xc_version.h config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating build/Makefile config.status: creating build/libxc.pc config.status: creating build/libxc.spec config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Making install in build make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/pkgconfig' /usr/bin/install -c -m 644 libxc.pc '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/pkgconfig' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/build' Making install in src make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/get_funcs.pl /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src .. make install-am make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT special_functions.lo -MD -MP -MF .deps/special_functions.Tpo -c -o special_functions.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/special_functions.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT special_functions.lo -MD -MP -MF .deps/special_functions.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/special_functions.c -o special_functions.o mv -f .deps/special_functions.Tpo .deps/special_functions.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT bessel.lo -MD -MP -MF .deps/bessel.Tpo -c -o bessel.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/bessel.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT bessel.lo -MD -MP -MF .deps/bessel.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/bessel.c -o bessel.o mv -f .deps/bessel.Tpo .deps/bessel.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT expint_e1.lo -MD -MP -MF .deps/expint_e1.Tpo -c -o expint_e1.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/expint_e1.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT expint_e1.lo -MD -MP -MF .deps/expint_e1.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/expint_e1.c -o expint_e1.o mv -f .deps/expint_e1.Tpo .deps/expint_e1.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT integrate.lo -MD -MP -MF .deps/integrate.Tpo -c -o integrate.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/integrate.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT integrate.lo -MD -MP -MF .deps/integrate.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/integrate.c -o integrate.o mv -f .deps/integrate.Tpo .deps/integrate.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/util.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT util.lo -MD -MP -MF .deps/util.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/util.c -o util.o mv -f .deps/util.Tpo .deps/util.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mix_func.lo -MD -MP -MF .deps/mix_func.Tpo -c -o mix_func.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/mix_func.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mix_func.lo -MD -MP -MF .deps/mix_func.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/mix_func.c -o mix_func.o mv -f .deps/mix_func.Tpo .deps/mix_func.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT functionals.lo -MD -MP -MF .deps/functionals.Tpo -c -o functionals.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/functionals.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT functionals.lo -MD -MP -MF .deps/functionals.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/functionals.c -o functionals.o mv -f .deps/functionals.Tpo .deps/functionals.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c -o version.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/version.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/version.c -o version.o mv -f .deps/version.Tpo .deps/version.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda.lo -MD -MP -MF .deps/lda.Tpo -c -o lda.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda.lo -MD -MP -MF .deps/lda.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda.c -o lda.o mv -f .deps/lda.Tpo .deps/lda.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda_x.lo -MD -MP -MF .deps/lda_x.Tpo -c -o lda_x.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda_x.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda_x.lo -MD -MP -MF .deps/lda_x.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda_x.c -o lda_x.o mv -f .deps/lda_x.Tpo .deps/lda_x.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src 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/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda_x_2d.c -o lda_x_2d.o mv -f .deps/lda_x_2d.Tpo .deps/lda_x_2d.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda_c_wigner.lo -MD -MP -MF .deps/lda_c_wigner.Tpo -c -o lda_c_wigner.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda_c_wigner.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT lda_c_wigner.lo -MD -MP -MF .deps/lda_c_wigner.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/lda_c_wigner.c -o lda_c_wigner.o mv -f .deps/lda_c_wigner.Tpo .deps/lda_c_wigner.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT 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--tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_xc_otpss_d.lo -MD -MP -MF .deps/mgga_xc_otpss_d.Tpo -c -o mgga_xc_otpss_d.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_xc_otpss_d.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT mgga_xc_otpss_d.lo -MD -MP -MF .deps/mgga_xc_otpss_d.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/mgga_xc_otpss_d.c -o mgga_xc_otpss_d.o mv -f .deps/mgga_xc_otpss_d.Tpo .deps/mgga_xc_otpss_d.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_m05.lo -MD -MP -MF .deps/hyb_mgga_xc_m05.Tpo -c -o hyb_mgga_xc_m05.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_m05.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_m05.lo -MD -MP -MF .deps/hyb_mgga_xc_m05.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_m05.c -o hyb_mgga_xc_m05.o mv -f .deps/hyb_mgga_xc_m05.Tpo .deps/hyb_mgga_xc_m05.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_tpssh.lo -MD -MP -MF .deps/hyb_mgga_xc_tpssh.Tpo -c -o hyb_mgga_xc_tpssh.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_tpssh.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT hyb_mgga_xc_tpssh.lo -MD -MP -MF .deps/hyb_mgga_xc_tpssh.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/hyb_mgga_xc_tpssh.c -o hyb_mgga_xc_tpssh.o mv -f .deps/hyb_mgga_xc_tpssh.Tpo .deps/hyb_mgga_xc_tpssh.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -version-info 3:2:0 -o libxc.la -rpath /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib special_functions.lo bessel.lo expint_e1.lo integrate.lo util.lo mix_func.lo functionals.lo version.lo lda.lo lda_x.lo lda_x_1d.lo lda_x_2d.lo lda_c_wigner.lo lda_c_gombas.lo lda_c_rpa.lo lda_c_hl.lo lda_c_vwn.lo lda_c_pz.lo lda_c_pw.lo lda_c_ml1.lo lda_c_rc04.lo lda_xc_teter93.lo lda_c_1d_csc.lo lda_c_1d_loos.lo lda_c_2d_amgb.lo lda_c_2d_prm.lo stoll.lo lda_k_tf.lo gga.lo gga_x_lg93.lo gga_x_pbe.lo gga_x_rpbe.lo gga_x_pbea.lo gga_x_mpbe.lo gga_x_herman.lo gga_x_b86.lo gga_x_b86_mgc.lo gga_x_b88.lo gga_x_g96.lo gga_x_pw86.lo gga_x_pw91.lo gga_x_optx.lo gga_x_airy.lo gga_x_c09x.lo gga_x_dk87.lo gga_x_ft97.lo gga_x_wc.lo gga_x_am05.lo gga_x_bayesian.lo gga_x_kt.lo gga_x_htbs.lo gga_c_pbe.lo gga_c_lyp.lo gga_c_p86.lo gga_c_pw91.lo gga_c_am05.lo gga_c_lm.lo gga_c_wl.lo gga_c_wi.lo gga_x_lb.lo gga_xc_b97.lo gga_xc_edf1.lo gga_xc_1w.lo gga_c_optc.lo gga_c_tca.lo gga_x_bpccac.lo gga_x_sogga11.lo gga_c_sogga11.lo gga_xc_th.lo gga_x_wpbeh.lo gga_x_hjs.lo gga_x_ityh.lo gga_x_sfat.lo gga_x_ak13.lo gga_x_q2d.lo gga_c_q2d.lo gga_x_ssb_sw.lo gga_c_ft97.lo gga_c_op.lo gga_x_n12.lo gga_x_lv_rpw86.lo gga_x_2d_b86.lo gga_x_2d_b86_mgc.lo gga_x_2d_b88.lo gga_x_2d_pbe.lo gga_k_tflw.lo gga_k_pearson.lo gga_k_ol1.lo gga_k_ol2.lo gga_k_dk.lo gga_k_meyer.lo gga_x_vmt.lo gga_xc_oblyp_d.lo hyb_gga_xc_b3lyp.lo hyb_gga_xc_o3lyp.lo hyb_gga_xc_pbeh.lo hyb_gga_xc_b1wc.lo hyb_gga_xc_b97.lo hyb_gga_xc_hse.lo hyb_gga_xc_cam_b3lyp.lo hyb_gga_xc_camy_blyp.lo mgga.lo mgga_x_lta.lo mgga_x_tpss.lo mgga_x_br89.lo mgga_x_gvt4.lo mgga_x_m06l.lo mgga_x_tau_hcth.lo mgga_x_2d_prhg07.lo mgga_x_pkzb.lo mgga_x_m05.lo mgga_x_m08.lo mgga_x_ms.lo mgga_x_mn12.lo mgga_x_mk00.lo mgga_c_vsxc.lo mgga_c_pkzb.lo mgga_c_bc95.lo mgga_c_m08.lo mgga_c_cc06.lo mgga_c_cs.lo mgga_xc_otpss_d.lo hyb_mgga_xc_m05.lo hyb_mgga_xc_tpssh.lo libtool: link: ar cru .libs/libxc.a special_functions.o bessel.o expint_e1.o integrate.o util.o mix_func.o functionals.o version.o lda.o lda_x.o lda_x_1d.o lda_x_2d.o lda_c_wigner.o lda_c_gombas.o lda_c_rpa.o lda_c_hl.o lda_c_vwn.o lda_c_pz.o lda_c_pw.o lda_c_ml1.o lda_c_rc04.o lda_xc_teter93.o lda_c_1d_csc.o lda_c_1d_loos.o lda_c_2d_amgb.o lda_c_2d_prm.o stoll.o lda_k_tf.o gga.o gga_x_lg93.o gga_x_pbe.o gga_x_rpbe.o gga_x_pbea.o gga_x_mpbe.o gga_x_herman.o gga_x_b86.o gga_x_b86_mgc.o gga_x_b88.o gga_x_g96.o gga_x_pw86.o gga_x_pw91.o gga_x_optx.o gga_x_airy.o gga_x_c09x.o gga_x_dk87.o gga_x_ft97.o gga_x_wc.o gga_x_am05.o gga_x_bayesian.o gga_x_kt.o gga_x_htbs.o gga_c_pbe.o gga_c_lyp.o gga_c_p86.o gga_c_pw91.o gga_c_am05.o gga_c_lm.o gga_c_wl.o gga_c_wi.o gga_x_lb.o gga_xc_b97.o gga_xc_edf1.o gga_xc_1w.o gga_c_optc.o gga_c_tca.o gga_x_bpccac.o gga_x_sogga11.o gga_c_sogga11.o gga_xc_th.o gga_x_wpbeh.o gga_x_hjs.o gga_x_ityh.o gga_x_sfat.o gga_x_ak13.o gga_x_q2d.o gga_c_q2d.o gga_x_ssb_sw.o gga_c_ft97.o gga_c_op.o gga_x_n12.o gga_x_lv_rpw86.o gga_x_2d_b86.o gga_x_2d_b86_mgc.o gga_x_2d_b88.o gga_x_2d_pbe.o gga_k_tflw.o gga_k_pearson.o gga_k_ol1.o gga_k_ol2.o gga_k_dk.o gga_k_meyer.o gga_x_vmt.o gga_xc_oblyp_d.o hyb_gga_xc_b3lyp.o hyb_gga_xc_o3lyp.o hyb_gga_xc_pbeh.o hyb_gga_xc_b1wc.o hyb_gga_xc_b97.o hyb_gga_xc_hse.o hyb_gga_xc_cam_b3lyp.o hyb_gga_xc_camy_blyp.o mgga.o mgga_x_lta.o mgga_x_tpss.o mgga_x_br89.o mgga_x_gvt4.o mgga_x_m06l.o mgga_x_tau_hcth.o mgga_x_2d_prhg07.o mgga_x_pkzb.o mgga_x_m05.o mgga_x_m08.o mgga_x_ms.o mgga_x_mn12.o mgga_x_mk00.o mgga_c_vsxc.o mgga_c_pkzb.o mgga_c_bc95.o mgga_c_m08.o mgga_c_cc06.o mgga_c_cs.o mgga_xc_otpss_d.o hyb_mgga_xc_m05.o hyb_mgga_xc_tpssh.o libtool: link: ranlib .libs/libxc.a libtool: link: ( cd ".libs" && rm -f "libxc.la" && ln -s "../libxc.la" "libxc.la" ) /bin/sh ../libtool --tag=CC --tag=F77 --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT libxcf90_la-xc_f.lo -MD -MP -MF .deps/libxcf90_la-xc_f.Tpo -c -o libxcf90_la-xc_f.lo `test -f 'xc_f.c' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/'`xc_f.c libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT libxcf90_la-xc_f.lo -MD -MP -MF .deps/libxcf90_la-xc_f.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/xc_f.c -o libxcf90_la-xc_f.o mv -f .deps/libxcf90_la-xc_f.Tpo .deps/libxcf90_la-xc_f.Plo /bin/sh ../libtool --tag=FC --tag=F77 --mode=compile /opt/cray/craype/2.5.8/bin/ftn -O3 -c -o libxcf90_la-libxc_funcs.lo `test -f 'libxc_funcs.f90' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/'`libxc_funcs.f90 libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.8/bin/ftn -O3 -c libxc_funcs.f90 -o libxcf90_la-libxc_funcs.o /lib/cpp -ansi /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/libxc_master.F90 > ../src/libxc.f90 /bin/sh ../libtool --tag=FC --tag=F77 --mode=compile /opt/cray/craype/2.5.8/bin/ftn -O3 -c -o libxcf90_la-libxc.lo `test -f 'libxc.f90' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/'`libxc.f90 libtool: ignoring unknown tag F77 libtool: compile: /opt/cray/craype/2.5.8/bin/ftn -O3 -c libxc.f90 -o libxcf90_la-libxc.o /bin/sh ../libtool --tag=FC --tag=F77 --mode=link /opt/cray/craype/2.5.8/bin/ftn -O3 -version-info 3:2:0 -o libxcf90.la -rpath /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib libxcf90_la-xc_f.lo libxcf90_la-libxc_funcs.lo libxcf90_la-libxc.lo libxc.la libtool: ignoring unknown tag F77 libtool: link: ar cru .libs/libxcf90.a libxcf90_la-xc_f.o libxcf90_la-libxc_funcs.o libxcf90_la-libxc.o libtool: link: ranlib .libs/libxcf90.a libtool: link: ( cd ".libs" && rm -f "libxcf90.la" && ln -s "../libxcf90.la" "libxcf90.la" ) /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src -I.. -g -O2 -MT xc-info.o -MD -MP -MF .deps/xc-info.Tpo -c -o xc-info.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/xc-info.c mv -f .deps/xc-info.Tpo .deps/xc-info.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-info xc-info.o libxc.la -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-info xc-info.o ./.libs/libxc.a -lm make[3]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libxc.la libxcf90.la '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib' libtool: install: /usr/bin/install -c .libs/libxc.lai /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.la libtool: install: /usr/bin/install -c .libs/libxcf90.lai /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.la libtool: install: /usr/bin/install -c .libs/libxc.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: chmod 644 /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: ranlib /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a libtool: install: /usr/bin/install -c .libs/libxcf90.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: install: chmod 644 /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: install: ranlib /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxcf90.a libtool: finish: PATH="/opt/cray/fftw/3.3.4.10/interlagos/bin:/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin:/opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/bin:/opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/sbin:/opt/cray/dvs/2.5_0.9.0-1.0502.2188.1.113.gem/bin:/opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/bin:/opt/cray/pmi/5.0.10-1.0000.11050.179.3.gem/bin:/opt/cray/ugni/6.0-1.0502.10863.8.28.gem/bin:/opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/bin:/opt/gcc/4.9.3/bin:/sw/tools/bin:/sw/tools/bin:/sw/xe/darshan/3.1.3/darshan-3.1.3/bin:/sw/EasyBuild/software/gnuplot/5.0.5/bin:/sw/admin/scripts:/sw/user/scripts:/opt/xalt/0.7.6/sles11.3/libexec:/opt/xalt/0.7.6/sles11.3/bin:/usr/local/gsi-openssh-6.2p2-2/bin:/opt/java/jdk1.8.0_51/bin:/usr/local/globus-5.2.5/bin:/usr/local/globus-5.2.5/sbin:/opt/moab/9.0.2t7/sbin:/opt/torque/6.0.4/sbin:/opt/torque/6.0.4/bin:/opt/cray/mpt/7.5.0/gni/bin:/opt/cray/craype/2.5.8/bin:/opt/cray/eslogin/eswrap/1.3.3-1.020200.1280.0/bin:/opt/modules/3.2.10.4/bin:/opt/moab/9.0.2t7/bin:/u/system/bwjenkins/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin:/sbin" ldconfig -n /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib ---------------------------------------------------------------------- Libraries have been installed in: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c xc-info '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin' libtool: install: /usr/bin/install -c xc-info /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/bin/xc-info /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/xc.h /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/xc_config.h /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/src/xc_unconfig.h '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 xc_funcs.h libxc_funcs_m.mod xc_f90_lib_m.mod xc_f90_types_m.mod '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' make[3]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src' Making install in testsuite make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_get_data-xc-get_data.o -MD -MP -MF .deps/xc_get_data-xc-get_data.Tpo -c -o xc_get_data-xc-get_data.o `test -f 'xc-get_data.c' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-get_data.c mv -f .deps/xc_get_data-xc-get_data.Tpo .deps/xc_get_data-xc-get_data.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-get_data xc_get_data-xc-get_data.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-get_data xc_get_data-xc-get_data.o -L../src/ /mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_consistency-xc-consistency.o -MD -MP -MF .deps/xc_consistency-xc-consistency.Tpo -c -o xc_consistency-xc-consistency.o `test -f 'xc-consistency.c' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-consistency.c mv -f .deps/xc_consistency-xc-consistency.Tpo .deps/xc_consistency-xc-consistency.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-consistency xc_consistency-xc-consistency.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-consistency xc_consistency-xc-consistency.o -L../src/ /mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_regression-xc-regression.o -MD -MP -MF .deps/xc_regression-xc-regression.Tpo -c -o xc_regression-xc-regression.o `test -f 'xc-regression.c' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-regression.c mv -f .deps/xc_regression-xc-regression.Tpo .deps/xc_regression-xc-regression.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-regression xc_regression-xc-regression.o -L../src/ -lxc -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-regression xc_regression-xc-regression.o -L../src/ /mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/src/.libs/libxc.a -lm /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite -I.. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/../src/ -I../src -g -O2 -MT xc_error-xc-error.o -MD -MP -MF .deps/xc_error-xc-error.Tpo -c -o xc_error-xc-error.o `test -f 'xc-error.c' || echo '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/testsuite/'`xc-error.c mv -f .deps/xc_error-xc-error.Tpo .deps/xc_error-xc-error.Po /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-error xc_error-xc-error.o -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -g -O2 -o xc-error xc_error-xc-error.o -lm make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/testsuite' make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' /usr/bin/install -c -m 644 xc_version.h '/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/include' make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64' -- Found LIBXC: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/libxc-2.2.2/lib64/lib/libxc.a -- Could NOT find LIBSPG (missing: LIBSPG_LIBRARIES) spglib-1.6.3/ spglib-1.6.3/aclocal.m4 spglib-1.6.3/AUTHORS spglib-1.6.3/ChangeLog spglib-1.6.3/compile spglib-1.6.3/config.guess spglib-1.6.3/config.h.in spglib-1.6.3/config.sub spglib-1.6.3/configure spglib-1.6.3/configure.ac spglib-1.6.3/COPYING spglib-1.6.3/depcomp spglib-1.6.3/example/ spglib-1.6.3/INSTALL spglib-1.6.3/install-sh spglib-1.6.3/ltmain.sh spglib-1.6.3/m4/ spglib-1.6.3/Makefile.am spglib-1.6.3/Makefile.in spglib-1.6.3/missing spglib-1.6.3/NEWS spglib-1.6.3/python/ spglib-1.6.3/README spglib-1.6.3/src/ spglib-1.6.3/test/ spglib-1.6.3/test/check_consistency.py spglib-1.6.3/test/data/ spglib-1.6.3/test/extconf.rb spglib-1.6.3/test/getspg.c spglib-1.6.3/test/poscar.rb spglib-1.6.3/test/poscar2findsym.rb spglib-1.6.3/test/README spglib-1.6.3/test/symPoscar.rb spglib-1.6.3/test/data/cubic/ spglib-1.6.3/test/data/hexagonal/ spglib-1.6.3/test/data/monoclinic/ spglib-1.6.3/test/data/orthorhombic/ spglib-1.6.3/test/data/others/ spglib-1.6.3/test/data/test-all.zsh spglib-1.6.3/test/data/test-cubic.zsh spglib-1.6.3/test/data/test-hexa.zsh spglib-1.6.3/test/data/test-monocli.zsh spglib-1.6.3/test/data/test-ortho.zsh spglib-1.6.3/test/data/test-refined_symmetry.zsh spglib-1.6.3/test/data/test-tetra.zsh spglib-1.6.3/test/data/test-tricli.zsh spglib-1.6.3/test/data/test-trigo.zsh spglib-1.6.3/test/data/tetragonal/ spglib-1.6.3/test/data/triclinic/ spglib-1.6.3/test/data/trigonal/ spglib-1.6.3/test/data/virtual_structure/ spglib-1.6.3/test/data/virtual_structure/poscar-221/ spglib-1.6.3/test/data/virtual_structure/poscar-222/ spglib-1.6.3/test/data/virtual_structure/poscar-223/ spglib-1.6.3/test/data/virtual_structure/poscar-224/ spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/ spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/ spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/ spglib-1.6.3/test/data/virtual_structure/poscars-1/ spglib-1.6.3/test/data/virtual_structure/poscars-2/ spglib-1.6.3/test/data/virtual_structure/rhombohedral/ spglib-1.6.3/test/data/virtual_structure/test-virtual.zsh spglib-1.6.3/test/data/virtual_structure/rhombohedral/POSCAR-1 spglib-1.6.3/test/data/virtual_structure/poscars-2/POSCAR-22 spglib-1.6.3/test/data/virtual_structure/poscars-2/POSCAR-26 spglib-1.6.3/test/data/virtual_structure/poscars-2/POSCAR-9 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-15 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-16 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-17 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-18 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-19 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-27 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-28 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-29 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-30 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-31 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-32 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-33 spglib-1.6.3/test/data/virtual_structure/poscars-1/POSCAR-6 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-01 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-02 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-03 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-04 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-05 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-06 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-07 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-08 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-09 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-10 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-11 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-12 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-13 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-14 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-15 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-16 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-17 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-18 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-19 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-20 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-21 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-22 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-23 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-24 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-25 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-26 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-27 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-28 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-29 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-30 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-31 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-32 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-33 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-34 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-35 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-36 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-37 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-38 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-39 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-40 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-41 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-42 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-43 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-44 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-45 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-46 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-47 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-48 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-49 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-50 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-51 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-52 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-53 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-54 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-55 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-56 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-57 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-58 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-59 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-60 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-61 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_unit/POSCAR-62 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-01 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-02 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-03 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-04 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-05 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-06 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-07 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-08 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-09 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-10 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-11 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-12 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-13 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-14 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-15 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-16 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-17 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-18 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-19 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-20 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-21 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-22 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-23 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-24 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-25 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-26 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-27 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-28 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-29 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-30 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-31 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-32 spglib-1.6.3/test/data/virtual_structure/poscar_Ia-3d_primitive/POSCAR-33 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-01 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-03 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-06 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-09 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-13 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-16 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-18 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-19 spglib-1.6.3/test/data/virtual_structure/poscar_Fd-3m_unit/POSCAR-21 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spglib-1.6.3/test/data/hexagonal/POSCAR-194 spglib-1.6.3/test/data/hexagonal/POSCAR-194-2 spglib-1.6.3/test/data/cubic/POSCAR-195 spglib-1.6.3/test/data/cubic/POSCAR-195-2 spglib-1.6.3/test/data/cubic/POSCAR-196 spglib-1.6.3/test/data/cubic/POSCAR-196-2 spglib-1.6.3/test/data/cubic/POSCAR-197 spglib-1.6.3/test/data/cubic/POSCAR-197-2 spglib-1.6.3/test/data/cubic/POSCAR-198 spglib-1.6.3/test/data/cubic/POSCAR-198-2 spglib-1.6.3/test/data/cubic/POSCAR-199 spglib-1.6.3/test/data/cubic/POSCAR-199-2 spglib-1.6.3/test/data/cubic/POSCAR-200 spglib-1.6.3/test/data/cubic/POSCAR-200-2 spglib-1.6.3/test/data/cubic/POSCAR-205 spglib-1.6.3/test/data/cubic/POSCAR-205-3 spglib-1.6.3/test/data/cubic/POSCAR-206 spglib-1.6.3/test/data/cubic/POSCAR-206-2 spglib-1.6.3/test/data/cubic/POSCAR-207 spglib-1.6.3/test/data/cubic/POSCAR-208 spglib-1.6.3/test/data/cubic/POSCAR-208-2 spglib-1.6.3/test/data/cubic/POSCAR-209 spglib-1.6.3/test/data/cubic/POSCAR-210 spglib-1.6.3/test/data/cubic/POSCAR-210-2 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spglib-1.6.3/src/Makefile.in spglib-1.6.3/src/mathfunc.c spglib-1.6.3/src/mathfunc.h spglib-1.6.3/src/pointgroup.c spglib-1.6.3/src/pointgroup.h spglib-1.6.3/src/primitive.c spglib-1.6.3/src/primitive.h spglib-1.6.3/src/refinement.c spglib-1.6.3/src/refinement.h spglib-1.6.3/src/site_symmetry.c spglib-1.6.3/src/site_symmetry.h spglib-1.6.3/src/sitesym_database.c spglib-1.6.3/src/sitesym_database.h spglib-1.6.3/src/spacegroup.c spglib-1.6.3/src/spacegroup.h spglib-1.6.3/src/spg_database.c spglib-1.6.3/src/spg_database.h spglib-1.6.3/src/spglib.c spglib-1.6.3/src/spglib.h spglib-1.6.3/src/spglib_f.c spglib-1.6.3/src/spin.c spglib-1.6.3/src/spin.h spglib-1.6.3/src/symmetry.c spglib-1.6.3/src/symmetry.h spglib-1.6.3/src/tetrahedron_method.c spglib-1.6.3/src/tetrahedron_method.h spglib-1.6.3/python/ase/ spglib-1.6.3/python/ase/_spglib.c spglib-1.6.3/python/ase/doc/ spglib-1.6.3/python/ase/examples/ spglib-1.6.3/python/ase/MANIFEST.in spglib-1.6.3/python/ase/pyspglib/ spglib-1.6.3/python/ase/setup.py spglib-1.6.3/python/ase/test/ spglib-1.6.3/python/ase/test/atoms.py spglib-1.6.3/python/ase/test/test_ir_triplets_at_q.py spglib-1.6.3/python/ase/test/test_stabilized_reciprocal_mesh.py spglib-1.6.3/python/ase/test/test_symmetry_with_spin.py spglib-1.6.3/python/ase/test/vasp.py spglib-1.6.3/python/ase/pyspglib/__init__.py spglib-1.6.3/python/ase/pyspglib/spglib.py spglib-1.6.3/python/ase/examples/example_ase.py spglib-1.6.3/python/ase/examples/example_atoms.py spglib-1.6.3/python/ase/doc/conf.py spglib-1.6.3/python/ase/doc/index.rst spglib-1.6.3/python/ase/doc/Makefile spglib-1.6.3/m4/libtool.m4 spglib-1.6.3/m4/ltoptions.m4 spglib-1.6.3/m4/ltsugar.m4 spglib-1.6.3/m4/ltversion.m4 spglib-1.6.3/m4/lt~obsolete.m4 spglib-1.6.3/example/example.c spglib-1.6.3/example/example.f90 spglib-1.6.3/example/example_f08.f90 spglib-1.6.3/example/frequency.dat spglib-1.6.3/example/Makefile_f08 spglib-1.6.3/example/README spglib-1.6.3/example/spglib_f08.f90 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... /opt/cray/craype/2.5.8/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/cray/craype/2.5.8/bin/cc accepts -g... yes checking for /opt/cray/craype/2.5.8/bin/cc option to accept ISO C89... none needed checking whether /opt/cray/craype/2.5.8/bin/cc understands -c and -o together... yes checking for style of include used by make... 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(cached) yes checking whether the /opt/cray/craype/2.5.8/bin/cc linker (/opt/xalt/0.7.6/sles11.3/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for sqrt... yes checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for an ANSI C-conforming const... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make all-recursive make[1]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64' Making all in src make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64/src' /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT cell.lo -MD -MP -MF .deps/cell.Tpo -c -o cell.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/cell.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT cell.lo -MD -MP -MF .deps/cell.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/cell.c -fPIC -DPIC -o .libs/cell.o libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT cell.lo -MD -MP -MF .deps/cell.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/cell.c -o cell.o >/dev/null 2>&1 mv -f .deps/cell.Tpo .deps/cell.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT debug.lo -MD -MP -MF .deps/debug.Tpo -c -o debug.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/debug.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT 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-I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT spglib_f.lo -MD -MP -MF .deps/spglib_f.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/spglib_f.c -fPIC -DPIC -o .libs/spglib_f.o libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT spglib_f.lo -MD -MP -MF .deps/spglib_f.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/spglib_f.c -o spglib_f.o >/dev/null 2>&1 mv -f .deps/spglib_f.Tpo .deps/spglib_f.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT spin.lo -MD -MP -MF .deps/spin.Tpo -c -o spin.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/spin.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT spin.lo -MD -MP -MF .deps/spin.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/spin.c -fPIC -DPIC -o .libs/spin.o libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT spin.lo -MD -MP -MF .deps/spin.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/spin.c -o spin.o >/dev/null 2>&1 mv -f .deps/spin.Tpo .deps/spin.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT symmetry.lo -MD -MP -MF .deps/symmetry.Tpo -c -o symmetry.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/symmetry.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT symmetry.lo -MD -MP -MF .deps/symmetry.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/symmetry.c -fPIC -DPIC -o .libs/symmetry.o libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT symmetry.lo -MD -MP -MF .deps/symmetry.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/symmetry.c -o symmetry.o >/dev/null 2>&1 mv -f .deps/symmetry.Tpo .deps/symmetry.Plo /bin/sh ../libtool --tag=CC --mode=compile /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT tetrahedron_method.lo -MD -MP -MF .deps/tetrahedron_method.Tpo -c -o tetrahedron_method.lo /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/tetrahedron_method.c libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT tetrahedron_method.lo -MD -MP -MF .deps/tetrahedron_method.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/tetrahedron_method.c -fPIC -DPIC -o .libs/tetrahedron_method.o libtool: compile: /opt/cray/craype/2.5.8/bin/cc -DHAVE_CONFIG_H -I. -I/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src -I.. -g -O2 -MT tetrahedron_method.lo -MD -MP -MF .deps/tetrahedron_method.Tpo -c /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/src/tetrahedron_method.c -o tetrahedron_method.o >/dev/null 2>&1 mv -f .deps/tetrahedron_method.Tpo .deps/tetrahedron_method.Plo /bin/sh ../libtool --tag=CC --mode=link /opt/cray/craype/2.5.8/bin/cc -g -O2 -o libsymspg.la -rpath /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64 cell.lo debug.lo hall_symbol.lo kpoint.lo lattice.lo mathfunc.lo pointgroup.lo primitive.lo refinement.lo site_symmetry.lo sitesym_database.lo spacegroup.lo spg_database.lo spglib.lo spglib_f.lo spin.lo symmetry.lo tetrahedron_method.lo -lm libtool: link: /opt/cray/craype/2.5.8/bin/cc -shared -fPIC -DPIC .libs/cell.o .libs/debug.o .libs/hall_symbol.o .libs/kpoint.o .libs/lattice.o .libs/mathfunc.o .libs/pointgroup.o .libs/primitive.o .libs/refinement.o .libs/site_symmetry.o .libs/sitesym_database.o .libs/spacegroup.o .libs/spg_database.o .libs/spglib.o .libs/spglib_f.o .libs/spin.o .libs/symmetry.o .libs/tetrahedron_method.o -lm -O2 -Wl,-soname -Wl,libsymspg.so.0 -o .libs/libsymspg.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsymspg.so.0" && ln -s "libsymspg.so.0.0.0" "libsymspg.so.0") libtool: link: (cd ".libs" && rm -f "libsymspg.so" && ln -s "libsymspg.so.0.0.0" "libsymspg.so") libtool: link: ar cru .libs/libsymspg.a cell.o debug.o hall_symbol.o kpoint.o lattice.o mathfunc.o pointgroup.o primitive.o refinement.o site_symmetry.o sitesym_database.o spacegroup.o spg_database.o spglib.o spglib_f.o spin.o symmetry.o tetrahedron_method.o libtool: link: ranlib .libs/libsymspg.a libtool: link: ( cd ".libs" && rm -f "libsymspg.la" && ln -s "../libsymspg.la" "libsymspg.la" ) make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64/src' make[2]: Entering directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64' make[1]: Leaving directory `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64' -- Found LIBSPG: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/lib/spglib-1.6.3/lib64/libsymspg.a -- Found Subversion: /usr/bin/svn (found version "1.6.17") CMake Warning (dev) at SubprojectIncludes/CMakeLists.txt.rmg.inc:5 (add_dependencies): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "libspg" of target "rmg-cpu" does not exist. Call Stack (most recent call first): CMakeLists.txt:589 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done nice make -j12 rmg-cpu -- Generating done -- Build files have been written to: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu Scanning dependencies of target XC1 Scanning dependencies of target InternalPseudo Scanning dependencies of target XC [ 1%] [ 1%] Building Fortran object XC/CMakeFiles/XC1.dir/kind.f90.o Building CXX object InternalPseudo/CMakeFiles/InternalPseudo.dir/InternalPseudo.cpp.o [ 1%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xclda_libxc.c.o Scanning dependencies of target RmgLib Scanning dependencies of target MG Scanning dependencies of target RMG_Subdiag Scanning dependencies of target RMG_Spin [ 1%] Scanning dependencies of target RMG_Spin_XC Building CXX object MG/CMakeFiles/MG.dir/Mgrid_Cbindings.cpp.o Scanning dependencies of target Force [ 1%] Building CXX object RMG/Spin/CMakeFiles/RMG_Spin.dir/GetOppositeEigvals.cpp.o [ 1%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/ApplyOperators.cpp.o [ 2%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/TradeImages.cpp.o [ 2%] Building CXX object Force/CMakeFiles/Force.dir/CorrectForces.cpp.o [ 2%] [ 3%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xcgga.c.o Building Fortran object XC/CMakeFiles/XC1.dir/io_global.f90.o [ 4%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xclsda_spin_libxc.c.o Scanning dependencies of target Finite_diff [ 4%] Building Fortran object XC/CMakeFiles/XC1.dir/constants.f90.o [ 4%] [ 4%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xcgga_spin.c.o Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyGradient.cpp.o [ 4%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xcgga_libxc.c.o Scanning dependencies of target Input /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c: In function 'xcgga_libxc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c:98:8: warning: 'func_id_c' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_c, func_id_c, XC_UNPOLARIZED) != 0) ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_libxc.c:95:8: warning: 'func_id_x' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_x, func_id_x, XC_UNPOLARIZED) != 0) ^ [ 4%] Building Fortran object XC/CMakeFiles/XC1.dir/funct.f90.o [ 4%] Building CXX object Input/CMakeFiles/Input.dir/AutoSet.cpp.o [ 5%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclda.c.o [ 5%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/xcgga_spin_libxc.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c: In function 'xcgga_spin_libxc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c:108:8: warning: 'func_id_c' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_c, func_id_c, XC_POLARIZED) != 0) ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/xcgga_spin_libxc.c:101:8: warning: 'func_id_x' may be used uninitialized in this function [-Wmaybe-uninitialized] if(xc_func_init(&func_x, func_id_x, XC_POLARIZED) != 0) ^ [ 5%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclsda_spin.c.o [ 6%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_vxc.c.o [ 6%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcblyp.c.o [ 6%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_vxc_exc.c.o [ 7%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpw91.c.o [ 7%] Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/pbe.f.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c: In function 'gcxcpw91': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c:34:6: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] int iflag; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c: In function 'ggac_spin': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/gcxcpw91.c:149:52: warning: variable 'dh0dw' set but not used [-Wunused-but-set-variable] double fz, fz2, fz3, fz4, dfz, bfup, bfdw, dh0up, dh0dw, dh0zup, dh0zdw, dh1zup, dh1zdw; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/CorrectForces.cpp: In function 'void CorrectForces(double*, double*, double*, double*, double*)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/CorrectForces.cpp:57:45: warning: unused variable 'mone' [-Wunused-variable] double alpha = get_vel_f(), zero = 0.0, mone = -1.0; ^ [ 7%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcblyp_spin.c.o [ 7%] Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/bpgcxc.f.o [ 7%] Building Fortran object XC/CMakeFiles/XC1.dir/vdw_splines.f90.o [ 7%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpbe.c.o [ 8%] Building Fortran object XC_useLIBXC/CMakeFiles/XC.dir/gga91_sr.f.o [ 8%] Building Fortran object XC/CMakeFiles/XC1.dir/functionals.F90.o [ 9%] [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/lsd_glyp.c.o Building C object XC_useLIBXC/CMakeFiles/XC.dir/corlyp.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/get_mgga_vxc.c: In function 'get_mgga_vxc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/get_mgga_vxc.c:14:26: warning: 'nrho_oppo' may be used uninitialized in this function [-Wmaybe-uninitialized] double *exc, *nrho, *nrho_oppo; ^ [ 9%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/lyp.c.o [ 9%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_mgga_vxc.c.o [ 9%] [ 9%] Building Fortran object XC/CMakeFiles/XC1.dir/lsda_functionals.F90.o Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpw91_spin.c.o Scanning dependencies of target RMG_Common [ 9%] Building C object MG/CMakeFiles/MG.dir/find_grid_owner.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/pbex.c: In function 'pbec_spin': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Spin/XC_notuseLIBXC/pbex.c:84:23: warning: variable 'fz4' set but not used [-Wunused-but-set-variable] double fz, fz2, fz3, fz4, dfz, bfup, bfdw, dh0up, dh0dw, dh0zup, dh0zdw; ^ [ 11%] [ 11%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_mgga_exc_vxc.c.o Building CXX object RMG/Spin/CMakeFiles/RMG_Spin.dir/GetOppositeOccupancies.cpp.o [ 12%] Building CXX object Force/CMakeFiles/Force.dir/Lforce.cpp.o [ 12%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/pbex.c.o [ 12%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag.cpp.o Linking CXX static library libMG.a [ 13%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetPhase.cpp.o [ 13%] Building Fortran object XC/CMakeFiles/XC1.dir/metagga.F90.o [ 13%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/get_te_tau.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/get_te_tau.c: In function 'get_te_tau': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/get_te_tau.c:16:26: warning: 'nrho_oppo' may be used uninitialized in this function [-Wmaybe-uninitialized] double *exc, *nrho, *nrho_oppo; ^ [ 14%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyLaplacian.cpp.o [ 14%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/perdew86.c.o [ 14%] Built target MG [ 14%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxcpbe_spin.c.o [ 14%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/mgga_libxc.c.o [ 14%] Building Fortran object XC/CMakeFiles/XC1.dir/capital.f90.o [ 14%] Building Fortran object XC/CMakeFiles/XC1.dir/expint.f90.o [ 14%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxbcp.c.o [ 16%] [ 16%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/gcxbcp_spin.c.o Building Fortran object XC/CMakeFiles/XC1.dir/erf.f90.o [ 16%] Building C object XC_useLIBXC/CMakeFiles/XC.dir/mix_tau.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/mix_tau.c: In function 'mix_tau': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/mix_tau.c:14:37: warning: unused variable 'residhist' [-Wunused-variable] static double **rhohist=NULL, **residhist=NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/mix_tau.c:14:21: warning: unused variable 'rhohist' [-Wunused-variable] static double **rhohist=NULL, **residhist=NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC_useLIBXC/mix_tau.c:13:9: warning: unused variable 'step' [-Wunused-variable] int step, inc = 1; ^ [ 17%] Building Fortran object XC/CMakeFiles/XC1.dir/matches.f90.o [ 17%] Building C object RMG/Spin/XC_notuseLIBXC/CMakeFiles/RMG_Spin_XC.dir/xclda_pz81.c.o [ 17%] Linking Fortran static library libXC.a Building Fortran object XC/CMakeFiles/XC1.dir/more_functionals.F90.o [ 17%] Built target XC [ 18%] Building CXX object XC/CMakeFiles/XC1.dir/vdw_correlation.cpp.o [ 18%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/EnergyCorrection.cpp.o Linking C static library libRMG_Spin_XC.a [ 18%] Built target RMG_Spin_XC [ 18%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/BroydenPotential.cpp.o [ 18%] Building CXX object Input/CMakeFiles/Input.dir/SetupGrids.cpp.o [ 20%] Building CXX object Input/CMakeFiles/Input.dir/GetPrimeFactors.cpp.o [ 20%] Building C object RMG/Spin/CMakeFiles/RMG_Spin.dir/get_rho_oppo.c.o [ 20%] Building C object Force/CMakeFiles/Force.dir/constrain.c.o [ 20%] Linking CXX static library libRMG_Spin.a Building CXX object Input/CMakeFiles/Input.dir/ReadForces.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/constrain.c: In function 'constrain': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/constrain.c:443:51: warning: 'iptr' may be used uninitialized in this function [-Wmaybe-uninitialized] iptr->constraint.forcemask[Y] = (Mag_T - FdotT) * Tau[3*ion+Y]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp: In constructor 'Vdw::Vdw(BaseGrid&, Lattice&, TradeImages&, int, double*, double*, double&, double&, double*, bool)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp:192:10: warning: variable 'filter_ratio' set but not used [-Wunused-but-set-variable] double filter_ratio = 1.0; ^ [ 21%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Lapack.cpp.o [ 21%] Built target RMG_Spin [ 21%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Magma.cpp.o [ 21%] Building CXX object Force/CMakeFiles/Force.dir/Force.cpp.o [ 21%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyAOperator.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp: In constructor 'Vdw::Vdw(BaseGrid&, Lattice&, TradeImages&, int, double*, double*, double&, double&, double*, bool)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp:393:59: warning: 'calc_rho' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_rho, total_rho, G.default_FG_RATIO); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp:394:51: warning: 'calc_gx' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gx, gx, G.default_FG_RATIO); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp:395:51: warning: 'calc_gy' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gy, gy, G.default_FG_RATIO); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/XC/vdw_correlation.cpp:396:51: warning: 'calc_gz' may be used uninitialized in this function [-Wmaybe-uninitialized] GetVtotPsi (calc_gz, gz, G.default_FG_RATIO); ^ [ 22%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/ApplyBOperator.cpp.o [ 22%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/Lattice.cpp.o [ 22%] Building CXX object XC/CMakeFiles/XC1.dir/Functional.cpp.o [ 22%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/BaseThread.cpp.o [ 23%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/DavPreconditioner.cpp.o [ 23%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/BaseGrid.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/ReadForces.cpp: In function 'void ReadForces(char*, CONTROL&, std::unordered_map<std::basic_string<char>, InputKey*>&)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/ReadForces.cpp:62:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(Forces.size() != 4 * lc.num_ions) { ^ [ 23%] Building CXX object Input/CMakeFiles/Input.dir/ReadVelocities.cpp.o [ 23%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Subdiag_Scalapack.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RmgLib/src/BaseThread.cpp: In constructor 'BaseThread::BaseThread(int)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RmgLib/src/BaseThread.cpp:62:9: warning: unused variable 'ncpus' [-Wunused-variable] int ncpus; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/iiforce.c: In function 'iiforce': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/iiforce.c:49:20: warning: unused variable 'tz' [-Wunused-variable] double tx, ty, tz; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/iiforce.c:49:16: warning: unused variable 'ty' [-Wunused-variable] double tx, ty, tz; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Force/iiforce.c:49:12: warning: unused variable 'tx' [-Wunused-variable] double tx, ty, tz; ^ [ 24%] Building CXX object Force/CMakeFiles/Force.dir/Nlccforce.cpp.o [ 24%] Building C object Force/CMakeFiles/Force.dir/iiforce.c.o [ 25%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/Mgrid.cpp.o [ 25%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCir.cpp.o [ 25%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cir_driver.cpp.o [ 25%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ApplyHamiltonian.cpp.o Linking CXX static library libXC1.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp: In instantiation of 'char* Subdiag_Scalapack(Kpoint<StateType>*, KpointType*, KpointType*, KpointType*, double*, KpointType*) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:50:137: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:228:23: warning: unused variable 'range' [-Wunused-variable] char *range = "a"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:68:18: warning: unused variable 'trans_t' [-Wunused-variable] static char *trans_t = "t"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:75:9: warning: variable 'izero' set but not used [-Wunused-but-set-variable] int izero = 0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp: In instantiation of 'char* Subdiag_Scalapack(Kpoint<StateType>*, KpointType*, KpointType*, KpointType*, double*, KpointType*) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:51:222: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:228:23: warning: unused variable 'range' [-Wunused-variable] char *range = "a"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:68:18: warning: unused variable 'trans_t' [-Wunused-variable] static char *trans_t = "t"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/Subdiag_Scalapack.cpp:75:9: warning: variable 'izero' set but not used [-Wunused-but-set-variable] int izero = 0; ^ [ 25%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ApplyHamiltonianBlock.cpp.o [ 25%] Built target XC1 [ 26%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Davidson.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/ReadVelocities.cpp: In function 'void ReadVelocities(char*, CONTROL&, std::unordered_map<std::basic_string<char>, InputKey*>&)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/ReadVelocities.cpp:62:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(Velocities.size() != lc.num_ions) { ^ [ 27%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrum.cpp.o Linking CXX static library libForce.a [ 27%] Built target Force [ 27%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapack.cpp.o Scanning dependencies of target Misc [ 28%] Building CXX object Misc/CMakeFiles/Misc.dir/InitPe4image.cpp.o [ 28%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrFourth.cpp.o [ 29%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrSixth.cpp.o [ 29%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cil_driver.cpp.o [ 30%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_cil_driver_threaded.cpp.o [ 31%] Building CXX object Input/CMakeFiles/Input.dir/ReadInit.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp: In instantiation of 'int FoldedSpectrum(Kpoint<StateType>*, int, KpointType*, int, KpointType*, int, double*, double*, int, int*, int, KpointType*, int) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:71:141: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:81:16: warning: unused variable 'ZERO_t' [-Wunused-variable] KpointType ZERO_t(0.0); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:85:14: warning: unused variable 'L' [-Wunused-variable] Lattice *L = kptr->L; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:88:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:88:25: warning: unused variable 'trans_n' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:89:25: warning: unused variable 'side' [-Wunused-variable] char *cuplo = "l", *side="l", *diag="n", *jobz="V"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:89:36: warning: unused variable 'diag' [-Wunused-variable] char *cuplo = "l", *side="l", *diag="n", *jobz="V"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:91:9: warning: unused variable 'ione' [-Wunused-variable] int ione=1, itype=1, info=0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:91:17: warning: unused variable 'itype' [-Wunused-variable] int ione=1, itype=1, info=0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:92:12: warning: unused variable 'rone' [-Wunused-variable] double rone = 1.0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrum.cpp:140:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp: In instantiation of 'int FoldedSpectrumScalapack(Kpoint<StateType>*, int, KpointType*, KpointType*, int, KpointType*, int, double*, KpointType*, Scalapack*, int, int) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:73:150: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:82:15: warning: unused variable 'RT1' [-Wunused-variable] RmgTimer *RT1, *RT2; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:86:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:88:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:88:25: warning: unused variable 'trans_n' [-Wunused-variable] char *trans_t="t", *trans_n="n"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:91:17: warning: unused variable 'itype' [-Wunused-variable] int ione=1, itype=1, info=0, izero=0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:94:15: warning: unused variable 'Grid' [-Wunused-variable] BaseGrid *Grid = kptr->G; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:95:14: warning: unused variable 'L' [-Wunused-variable] Lattice *L = kptr->L; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:105:9: warning: unused variable 'FSp_my_col' [-Wunused-variable] int FSp_my_col = FSp->GetCol(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:111:14: warning: unused variable 'scalapack_comm' [-Wunused-variable] MPI_Comm scalapack_comm = FSp->GetComm(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:118:10: warning: unused variable 'm_f_desca' [-Wunused-variable] int *m_f_desca = MainSp->GetDistDesca(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapack.cpp:147:9: warning: unused variable 's_s_dist_length' [-Wunused-variable] int s_s_dist_length = FSp->ComputeDesca(n_win, n_win, s_s_desca); ^ Scanning dependencies of target US_PP [ 31%] Building CXX object US_PP/CMakeFiles/US_PP.dir/PackGftoc.cpp.o [ 31%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MgridSubspace.cpp.o [ 31%] Building CXX object US_PP/CMakeFiles/US_PP.dir/GetPhaseSpecies.cpp.o [ 31%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MolecularDynamics.cpp.o [ 31%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumIterator.cpp.o [ 32%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumSetup.cpp.o [ 32%] Building CXX object Misc/CMakeFiles/Misc.dir/InitPe4kpspin.cpp.o Linking CXX static library libInternalPseudo.a [ 32%] Built target InternalPseudo [ 32%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Rmg_dsygvd_gpu.cpp.o [ 32%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/Rmg_zhegvd_gpu.cpp.o [ 32%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumGSE.cpp.o [ 32%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_grad_driver.cpp.o [ 32%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/AppCilrDriver.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp: In function 'void FoldedSpectrumIterator(double*, int, double*, int, double*, double, int, int)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:59:9: warning: unused variable 'ione' [-Wunused-variable] int ione = 1; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:65:9: warning: unused variable 'sizr' [-Wunused-variable] int sizr = n * k; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:68:13: warning: unused variable 'Tgpu' [-Wunused-variable] double *Tgpu = NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumIterator.cpp:69:13: warning: unused variable 'eigs_gpu' [-Wunused-variable] double *eigs_gpu = NULL; ^ [ 33%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitClebschGordan.cpp.o [ 34%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetAugRho.cpp.o [ 34%] [ 35%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapackGSE.cpp.o Building CXX object US_PP/CMakeFiles/US_PP.dir/Ylm.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp: In instantiation of 'void FoldedSpectrumGSE(DataType*, DataType*, DataType*, int, int, int, int*, int*, int, int, MPI_Comm&) [with DataType = double; MPI_Comm = int]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:61:121: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:77:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t = "t"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumGSE.cpp:78:10: warning: unused variable 'usecuxt' [-Wunused-variable] bool usecuxt = true; ^ [ 35%] Building CXX object US_PP/CMakeFiles/US_PP.dir/CubicHarmonic.cpp.o [ 35%] Building CXX object Input/CMakeFiles/Input.dir/ReadRmgAtoms.cpp.o [ 35%] Building CXX object Misc/CMakeFiles/Misc.dir/SharedMemory.cpp.o [ 35%] Building CXX object Misc/CMakeFiles/Misc.dir/VhDriver.cpp.o [ 36%] Building CXX object Misc/CMakeFiles/Misc.dir/Pw.cpp.o [ 36%] [ 36%] Building CXX object Misc/CMakeFiles/Misc.dir/PfftForward.cpp.o Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/app_del2_driver.cpp.o [ 36%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_beta_fourth.c.o [ 36%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_fcc.c.o [ 36%] /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp: In instantiation of 'void FoldedSpectrumScalapackGSE(DataType*, DataType*, DataType*, int, int, int, int*, int*, int, Scalapack*) [with DataType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:62:132: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:81:11: warning: unused variable 'trans_t' [-Wunused-variable] char *trans_t = "t"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:85:9: warning: unused variable 'THIS_PE' [-Wunused-variable] int THIS_PE = FSp->GetGroupIndex(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:86:9: warning: unused variable 'my_root_index' [-Wunused-variable] int my_root_index = MainSp->GetCommRank(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:89:10: warning: unused variable 'm_f_desca' [-Wunused-variable] int *m_f_desca = MainSp->GetDistDesca(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:90:9: warning: unused variable 'm_f_dist_length' [-Wunused-variable] int m_f_dist_length = MainSp->ComputeMdim(n) * MainSp->ComputeNdim(n); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackGSE.cpp:96:9: warning: unused variable 's_f_dist_length' [-Wunused-variable] int s_f_dist_length = FSp->ComputeDesca(n, n, s_f_desca); ^ Building CXX object Input/CMakeFiles/Input.dir/ReadDynamics.cpp.o [ 37%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_ortho.c.o [ 37%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_bcc.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/CubicHarmonic.cpp: In function 'double CubicHarmonic(int, int, double*)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/CubicHarmonic.cpp:21:37: warning: unused variable 'm_spherical' [-Wunused-variable] double xymod, rmod, theta, phi, m_spherical; ^ [ 38%] [ 38%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MixRho.cpp.o Building CXX object US_PP/CMakeFiles/US_PP.dir/InitWeight.cpp.o [ 38%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_beta_sixth.c.o [ 40%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/FiniteDiff_Cbindings.cpp.o [ 40%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_driver.c.o [ 40%] Building CXX object Misc/CMakeFiles/Misc.dir/PfftInverse.cpp.o [ 40%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumOrtho.cpp.o [ 40%] Building CXX object RMG/Subdiag/CMakeFiles/RMG_Subdiag.dir/FoldedSpectrumScalapackOrtho.cpp.o [ 40%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitWeightOne.cpp.o [ 41%] Building CXX object Misc/CMakeFiles/Misc.dir/GeneralDiag.cpp.o [ 41%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitLocalForward.cpp.o [ 41%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/FiniteDiff.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp: In instantiation of 'void FoldedSpectrumOrtho(int, int, int, int*, int*, KpointType*, KpointType*, int, MPI_Comm&) [with KpointType = double; MPI_Comm = int]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:57:108: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:64:12: warning: unused variable 'rzero' [-Wunused-variable] double rzero = 0.0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:65:12: warning: unused variable 'rone' [-Wunused-variable] double rone = 1.0; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:82:53: warning: unused variable 'side' [-Wunused-variable] char *trans_t="t", *trans_n="n", *cuplo = "l", *side = "l"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:140:14: warning: variable 'omp_tid' set but not used [-Wunused-but-set-variable] int idx, omp_tid; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumOrtho.cpp:142:13: warning: variable 'st1' set but not used [-Wunused-but-set-variable] int st, st1; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp: In instantiation of 'void FoldedSpectrumScalapackOrtho(int, int, int, int*, int*, KpointType*, KpointType*, KpointType*, KpointType*, KpointType*, Scalapack*) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:57:143: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:65:17: warning: unused variable 'NULLptr' [-Wunused-variable] KpointType *NULLptr = NULL; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:86:53: warning: unused variable 'side' [-Wunused-variable] char *trans_t="t", *trans_n="n", *cuplo = "l", *side = "l"; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:102:9: warning: unused variable 'FSp_nodes' [-Wunused-variable] int FSp_nodes = FSp_rows * FSp_cols; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:103:9: warning: unused variable 'FSp_context' [-Wunused-variable] int FSp_context = FSp->GetContext(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:104:9: warning: unused variable 'FSp_my_index' [-Wunused-variable] int FSp_my_index = FSp_my_row*FSp_cols + FSp_my_col; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:166:14: warning: variable 'omp_tid' set but not used [-Wunused-but-set-variable] int idx, omp_tid; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Subdiag/FoldedSpectrumScalapackOrtho.cpp:168:13: warning: variable 'st1' set but not used [-Wunused-but-set-variable] int st, st1; ^ [ 41%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteData.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp: In function 'void InitWeightOne(SPECIES*, double (*)[2], std::complex<double>*, int, int, int, fftw_plan, fftw_plan)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp:29:12: warning: unused variable 'r' [-Wunused-variable] double r, ax[3], bx[3]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp:29:22: warning: unused variable 'bx' [-Wunused-variable] double r, ax[3], bx[3]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp:38:12: warning: unused variable 'xside' [-Wunused-variable] double xside = get_xside(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp:39:12: warning: unused variable 'yside' [-Wunused-variable] double yside = get_yside(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitWeightOne.cpp:40:12: warning: unused variable 'zside' [-Wunused-variable] double zside = get_zside(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp: In function 'int GeneralDiagScaLapack(double*, double*, double*, double*, int, int, int)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:218:9: warning: unused variable 'scalapack_npes' [-Wunused-variable] int scalapack_npes = scalapack_nprow * scalapack_npcol; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:219:9: warning: unused variable 'root_npes' [-Wunused-variable] int root_npes = MainSp->GetRootNpes(); ^ [ 41%] Building CXX object Input/CMakeFiles/Input.dir/ReadKpoints.cpp.o [ 41%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_fcc.cpp.o [ 41%] Building CXX object Finite_diff/CMakeFiles/Finite_diff.dir/app_cir_bcc.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp: In instantiation of 'int GeneralDiagLapack(KpointType*, KpointType*, double*, KpointType*, int, int, int) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:111:107: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:119:10: warning: unused variable 'use_folded' [-Wunused-variable] bool use_folded = ((ct.use_folded_spectrum && (ct.scf_steps > 6)) || (ct.use_folded_spectrum && (ct.runflag == RESTART))); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp: In instantiation of 'int GeneralDiagLapack(KpointType*, KpointType*, double*, KpointType*, int, int, int) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:113:21: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/GeneralDiag.cpp:119:10: warning: unused variable 'use_folded' [-Wunused-variable] [ 42%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app_grad.c.o [ 42%] Building C object Finite_diff/CMakeFiles/Finite_diff.dir/app6_del2.c.o Linking CXX static library libRMG_Subdiag.a [ 43%] Built target RMG_Subdiag [ 43%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgPrintTimings.cpp.o [ 43%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgSumAll.cpp.o [ 43%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgTimer.cpp.o [ 44%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/RmgMaxAll.cpp.o [ 44%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/rmg_error.cpp.o [ 44%] [ 44%] Building CXX object Misc/CMakeFiles/Misc.dir/VhPfft.cpp.o Building CXX object Misc/CMakeFiles/Misc.dir/Fft_Cbindings.cpp.o [ 44%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitLocalBackward.cpp.o [ 44%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteBGW.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp: In function 'void RmgPrintTimings(MPI_Comm, const char*, int, int)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp:21:12: warning: unused variable 'time1' [-Wunused-variable] double time1, time2; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RmgLib/src/RmgPrintTimings.cpp:21:19: warning: unused variable 'time2' [-Wunused-variable] double time1, time2; ^ [ 45%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MixBetaxpsi1.cpp.o Linking CXX static library libFinite_diff.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp: In function 'void InitLocalBackward(double*, double*, double*)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:15: warning: variable 'Zv' set but not used [-Wunused-but-set-variable] double r, Zv, rc, rc2, rcnorm, t1; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:23: warning: variable 'rc2' set but not used [-Wunused-but-set-variable] double r, Zv, rc, rc2, rcnorm, t1; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:43:12: warning: unused variable 'x' [-Wunused-variable] double x[3]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:12: warning: variable 'xside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:19: warning: variable 'yside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:45:26: warning: variable 'zside' set but not used [-Wunused-but-set-variable] double xside, yside, zside; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:53:9: warning: unused variable 'npes' [-Wunused-variable] int npes = get_PE_X() * get_PE_Y() * get_PE_Z(); ^ [ 45%] Built target Finite_diff [ 46%] Building CXX object Input/CMakeFiles/Input.dir/ReadKpointsBandstructure.cpp.o [ 46%] Building CXX object Input/CMakeFiles/Input.dir/Verify.cpp.o [ 46%] Building CXX object Input/CMakeFiles/Input.dir/InputKey.cpp.o [ 47%] [ 47%] Building CXX object Input/CMakeFiles/Input.dir/RmgInputFile.cpp.o Building CXX object Input/CMakeFiles/Input.dir/CheckValue.cpp.o In file included from /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:21:0: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/AtomicInterpolate.h:42:5: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized] if((r < LOGGRID_START)) { ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/InitLocalBackward.cpp:42:12: note: 'r' was declared here double r, Zv, rc, rc2, rcnorm, t1; ^ [ 47%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/get_vh.cpp.o [ 48%] Building CXX object Misc/CMakeFiles/Misc.dir/GetVtotPsi.cpp.o [ 48%] Building CXX object RmgLib/CMakeFiles/RmgLib.dir/src/packfuncs.cpp.o [ 48%] Building CXX object Input/CMakeFiles/Input.dir/ReadCommon.cpp.o [ 49%] Building CXX object US_PP/CMakeFiles/US_PP.dir/FindFftwPhaseLocalpp.cpp.o [ 49%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Radius2grid.cpp.o [ 49%] Building CXX object US_PP/CMakeFiles/US_PP.dir/FindPhase.cpp.o [ 50%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Atomic.cpp.o [ 50%] Building CXX object US_PP/CMakeFiles/US_PP.dir/Atomic_Cbindings.cpp.o [ 50%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/WriteRestart.cpp.o [ 50%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitPseudo.cpp.o [ 51%] Building CXX object Misc/CMakeFiles/Misc.dir/FftInitPlans.cpp.o [ 51%] Building CXX object Misc/CMakeFiles/Misc.dir/FftFreqBin.cpp.o [ 51%] Building CXX object Misc/CMakeFiles/Misc.dir/FftFilter.cpp.o [ 52%] Building CXX object Misc/CMakeFiles/Misc.dir/FftLaplacian.cpp.o [ 52%] Building CXX object Misc/CMakeFiles/Misc.dir/FftGradient.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/Atomic.cpp: In member function 'void Atomic::InitBessel(double*, int, int, double*)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/Atomic.cpp:592:9: warning: unused variable 'istep' [-Wunused-variable] int istep; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/Atomic.cpp:594:9: warning: unused variable 'npes' [-Wunused-variable] int npes = Rmg_G->get_PE_X() * Rmg_G->get_PE_Y() * Rmg_G->get_PE_Z(); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/RmgInputFile.cpp: In member function 'void RmgInputFile::PreprocessInputFile(char*, MPI_Comm)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Input/RmgInputFile.cpp:335:42: warning: 'input_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] std::string input_string(input_buffer); ^ [ 52%] Building CXX object Misc/CMakeFiles/Misc.dir/FftInterpolation.cpp.o [ 52%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/LcaoGetAwave.cpp.o [ 53%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/LcaoGetPsi.cpp.o Linking CXX static library libRmgLib.a [ 53%] Building CXX object Input/CMakeFiles/Input.dir/MapElements.cpp.o [ 53%] Built target RmgLib [ 54%] Building CXX object Input/CMakeFiles/Input.dir/Upf.cpp.o [ 55%] Building CXX object Misc/CMakeFiles/Misc.dir/FftRestrict.cpp.o [ 55%] Building CXX object Input/CMakeFiles/Input.dir/ReadPseudo.cpp.o [ 55%] Building CXX object Input/CMakeFiles/Input.dir/ReadTFAtoms.cpp.o [ 55%] Building CXX object Misc/CMakeFiles/Misc.dir/CountAtomicOrbitals.cpp.o [ 55%] Building CXX object US_PP/CMakeFiles/US_PP.dir/InitQfunct.cpp.o [ 56%] [ 56%] Building CXX object US_PP/CMakeFiles/US_PP.dir/US_Cbindings.cpp.o Building C object US_PP/CMakeFiles/US_PP.dir/lcao_get_rho.c.o [ 56%] Building CXX object Misc/CMakeFiles/Misc.dir/FilenameIncrement.cpp.o [ 56%] Building CXX object Misc/CMakeFiles/Misc.dir/Scalapack.cpp.o [ 56%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ReadData.cpp.o [ 57%] Building C object Misc/CMakeFiles/Misc.dir/open_restart_file.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Scalapack.cpp: In constructor 'Scalapack::Scalapack(int, int, int, int, int, int, MPI_Comm)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Scalapack.cpp:115:9: warning: unused variable 'item' [-Wunused-variable] int item = thisimg % images_per_node; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/open_restart_file.c: In function 'open_restart_file': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/open_restart_file.c:67:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (!mkdir (dirname (tmpname), S_IRWXU)) ^ [ 57%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/OutputBandPlot.cpp.o [ 57%] Building C object US_PP/CMakeFiles/US_PP.dir/init_nuc.c.o [ 58%] Building C object US_PP/CMakeFiles/US_PP.dir/init_efield.c.o [ 58%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AppCirDriverBeta.cpp.o [ 60%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AssignWeight.cpp.o [ 60%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetWeight.cpp.o [ 60%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetWeightLocal.cpp.o [ 61%] Building C object US_PP/CMakeFiles/US_PP.dir/weight_shift_center.c.o [ 61%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetNlop.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp: In instantiation of 'void OutputBandPlot(Kpoint<StateType>**) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:51:47: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:142:19: warning: unused variable 'line_object' [-Wunused-variable] char *line_object; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:59:30: warning: unused variable 'pngfile' [-Wunused-variable] char filename[MAX_PATH], pngfile[MAX_PATH]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp: In instantiation of 'void OutputBandPlot(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:52:62: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:142:19: warning: unused variable 'line_object' [-Wunused-variable] char *line_object; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/OutputBandPlot.cpp:59:30: warning: unused variable 'pngfile' [-Wunused-variable] char filename[MAX_PATH], pngfile[MAX_PATH]; ^ [ 61%] Building C object US_PP/CMakeFiles/US_PP.dir/ylmr2.c.o [ 61%] Building CXX object Misc/CMakeFiles/Misc.dir/cnpy.cpp.o [ 62%] Building C object US_PP/CMakeFiles/US_PP.dir/linint.c.o [ 62%] Building C object US_PP/CMakeFiles/US_PP.dir/get_QnmL.c.o [ 62%] Building CXX object Misc/CMakeFiles/Misc.dir/LinePlot.cpp.o [ 63%] Building C object Misc/CMakeFiles/Misc.dir/prime_factors.c.o [ 63%] Building C object US_PP/CMakeFiles/US_PP.dir/radiff.c.o [ 63%] Building C object US_PP/CMakeFiles/US_PP.dir/ylm.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp: In instantiation of 'void GetWeight(Kpoint<StateType>**) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp:38:55: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp:105:17: warning: unused variable 'size' [-Wunused-variable] int size = nlxdim * nlydim * nlzdim; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp: In instantiation of 'void GetWeight(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp:39:83: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetWeight.cpp:105:17: warning: unused variable 'size' [-Wunused-variable] [ 64%] Building CXX object US_PP/CMakeFiles/US_PP.dir/GetQI.cpp.o [ 64%] Building C object US_PP/CMakeFiles/US_PP.dir/get_qqq.c.o [ 64%] Building CXX object Misc/CMakeFiles/Misc.dir/InitIo.cpp.o [ 64%] Building CXX object Misc/CMakeFiles/Misc.dir/Output_rho_xsf.cpp.o [ 64%] Building C object US_PP/CMakeFiles/US_PP.dir/radint1.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp: In instantiation of 'void GetNlop(Kpoint<StateType>**) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp:41:49: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp:49:21: warning: variable 'prj_per_ion' set but not used [-Wunused-but-set-variable] int ix, iy, iz, prj_per_ion; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp: In instantiation of 'void GetNlop(Kpoint<StateType>**) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp:42:78: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/GetNlop.cpp:49:21: warning: variable 'prj_per_ion' set but not used [-Wunused-but-set-variable] [ 64%] Building CXX object Misc/CMakeFiles/Misc.dir/InitHybridModel.cpp.o [ 65%] [ 65%] Building C object US_PP/CMakeFiles/US_PP.dir/get_ddd.c.o Building C object US_PP/CMakeFiles/US_PP.dir/radint.c.o [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/ReinitIonicPotentials.cpp.o [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/transition_rmg.cpp.o [ 65%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/PotentialAcceleration.cpp.o [ 66%] Linking CXX static library libInput.a Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetNewRho.cpp.o [ 66%] Built target Input [ 66%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Betaxpsi.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/pack_gftoc.c: In function 'pack_gftoc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/US_PP/pack_gftoc.c:24:9: warning: variable 'ixstart' set but not used [-Wunused-but-set-variable] int ixstart = -(nlxdim )/2; ^ [ 66%] Building C object US_PP/CMakeFiles/US_PP.dir/pack_gftoc.c.o [ 67%] Building CXX object Misc/CMakeFiles/Misc.dir/Fill.cpp.o [ 67%] Building CXX object Misc/CMakeFiles/Misc.dir/GetTe.cpp.o [ 67%] Building C object Misc/CMakeFiles/Misc.dir/init_kpoints.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/init_kpoints.c: In function 'init_kpoints': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/init_kpoints.c:97:31: warning: passing argument 6 of 'spg_get_ir_reciprocal_mesh' from incompatible pointer type is_time_reversal, lattice, tau, ityp, ct.num_ions, symprec); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/init_kpoints.c:41:5: note: expected 'const double (*)[3]' but argument is of type 'double (*)[3]' int spg_get_ir_reciprocal_mesh(int *grid_address, ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp: In function 'void Output_rho_xsf(double*, MPI_Comm)': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:193:43: warning: narrowing conversion of 'sizes[0]' from 'int' to 'const unsigned int' inside { } [-Wnarrowing] const unsigned int shape1[] = {sizes[0], sizes[1], sizes[2]}; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:193:53: warning: narrowing conversion of 'sizes[1]' from 'int' to 'const unsigned int' inside { } [-Wnarrowing] const unsigned int shape1[] = {sizes[0], sizes[1], sizes[2]}; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:193:63: warning: narrowing conversion of 'sizes[2]' from 'int' to 'const unsigned int' inside { } [-Wnarrowing] const unsigned int shape1[] = {sizes[0], sizes[1], sizes[2]}; ^ In file included from /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:10:0: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h: In instantiation of 'void cnpy::npz_save(std::string, std::string, const T*, const unsigned int*, unsigned int, std::string) [with T = double; std::string = std::basic_string<char>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:176:56: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:151:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int m=0; m<ndims; m++ ) nels *= shape[m]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h: In instantiation of 'std::vector<char> cnpy::create_npy_header(const T*, const unsigned int*, unsigned int) [with T = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:148:74: required from 'void cnpy::npz_save(std::string, std::string, const T*, const unsigned int*, unsigned int, std::string) [with T = double; std::string = std::basic_string<char>]' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:176:56: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:216:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 1;i < ndims;i++) { ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h: In instantiation of 'std::vector<char>& cnpy::operator+=(std::vector<char>&, T) [with T = short unsigned int]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:161:22: required from 'void cnpy::npz_save(std::string, std::string, const T*, const unsigned int*, unsigned int, std::string) [with T = double; std::string = std::basic_string<char>]' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:176:56: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(char byte = 0; byte < sizeof(T); byte++) { ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h: In instantiation of 'std::vector<char>& cnpy::operator+=(std::vector<char>&, T) [with T = unsigned int]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:167:22: required from 'void cnpy::npz_save(std::string, std::string, const T*, const unsigned int*, unsigned int, std::string) [with T = double; std::string = std::basic_string<char>]' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:176:56: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h: In instantiation of 'std::vector<char>& cnpy::operator+=(std::vector<char>&, T) [with T = char]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:211:14: required from 'std::vector<char> cnpy::create_npy_header(const T*, const unsigned int*, unsigned int) [with T = double]' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:148:74: required from 'void cnpy::npz_save(std::string, std::string, const T*, const unsigned int*, unsigned int, std::string) [with T = double; std::string = std::basic_string<char>]' /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Output_rho_xsf.cpp:176:56: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Headers/cnpy.h:49:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] [ 67%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Init.cpp.o Linking CXX static library libUS_PP.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp: In instantiation of 'double Fill(Kpoint<StateType>**, double, double, double, int, int) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:65:74: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:76:24: warning: unused variable 'kpt' [-Wunused-variable] int iter, st, st1, kpt, idx, nks, nspin = (ct.spin_flag + 1); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:78:40: warning: unused variable 'eig' [-Wunused-variable] double mu, dmu, mu1, mu2, f, fmid, eig; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp: In instantiation of 'double Fill(Kpoint<StateType>**, double, double, double, int, int) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:66:89: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:76:24: warning: unused variable 'kpt' [-Wunused-variable] int iter, st, st1, kpt, idx, nks, nspin = (ct.spin_flag + 1); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/Fill.cpp:78:40: warning: unused variable 'eig' [-Wunused-variable] double mu, dmu, mu1, mu2, f, fmid, eig; ^ [ 67%] Built target US_PP [ 68%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Main.cpp.o [ 68%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/AppNls.cpp.o [ 68%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Kpoint.cpp.o [ 69%] Building CXX object Misc/CMakeFiles/Misc.dir/RmgCudaError.cpp.o [ 70%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/State.cpp.o [ 70%] Building CXX object Misc/CMakeFiles/Misc.dir/RmgGemm.cpp.o [ 70%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Quench.cpp.o [ 70%] Building CXX object Misc/CMakeFiles/Misc.dir/RmgSymm.cpp.o [ 70%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Relax.cpp.o [ 70%] [ 70%] Building CXX object Misc/CMakeFiles/Misc.dir/GpuAlloc.cpp.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/RmgThread.cpp.o [ 71%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/OutputEigenvalues.cpp.o [ 71%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Scf.cpp.o [ 71%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/pack_stop_axpy.cpp.o [ 72%] Building CXX object Misc/CMakeFiles/Misc.dir/GpuAllocHost.cpp.o [ 72%] Building CXX object Misc/CMakeFiles/Misc.dir/RmgTimer_Cbindings.cpp.o [ 72%] Building CXX object Misc/CMakeFiles/Misc.dir/GlobalSums.cpp.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/Relax.cpp: In function 'void Relax(int, double*, double*, double*, double*, double*, double*, double*, Kpoint<StateType>**) [with OrbitalType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/Relax.cpp:146:9: warning: 'CONV_FORCE' may be used uninitialized in this function [-Wmaybe-uninitialized] if (CONV_FORCE) ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/Relax.cpp: In function 'void Relax(int, double*, double*, double*, double*, double*, double*, double*, Kpoint<StateType>**) [with OrbitalType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/Relax.cpp:146:9: warning: 'CONV_FORCE' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 73%] Building CXX object Misc/CMakeFiles/Misc.dir/GlobalSums_Cbindings.cpp.o [ 73%] Building CXX object Misc/CMakeFiles/Misc.dir/BaseThread_Cbindings.cpp.o [ 73%] Building CXX object Misc/CMakeFiles/Misc.dir/TradeImages_Cbindings.cpp.o [ 74%] Building CXX object Misc/CMakeFiles/Misc.dir/RmgSumAll_Cbindings.cpp.o [ 75%] [ 75%] [ 75%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/MgEigState.cpp.o Building CXX object Misc/CMakeFiles/Misc.dir/packfuncs_Cbindings.cpp.o Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/genvpsi.cpp.o [ 75%] Building CXX object Misc/CMakeFiles/Misc.dir/pack_dtos.cpp.o [ 75%] Building CXX object Misc/CMakeFiles/Misc.dir/pack_stod.cpp.o [ 75%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_occ.c.o [ 75%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/GetGamma.cpp.o [ 76%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/fastrelax.c.o [ 76%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/scalapack_tools.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/scalapack_tools.c: In function 'matsum_packbuffer': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/scalapack_tools.c:511:56: warning: unused variable 'idx' [-Wunused-variable] int i, j, ii, jj, iii, jjj, li, lj, maxrow, maxcol,idx; ^ [ 77%] Building CXX object Misc/CMakeFiles/Misc.dir/BaseGrid_Cbindings.cpp.o [ 77%] Building CXX object Misc/CMakeFiles/Misc.dir/Lattice_Cbindings.cpp.o [ 77%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/lbfgs_init.c.o [ 77%] Building CXX object Misc/CMakeFiles/Misc.dir/transition.cpp.o [ 78%] Building C object Misc/CMakeFiles/Misc.dir/init_pestr.c.o [ 80%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/Nlforce.cpp.o [ 80%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/pack_rho_ctof.c.o [ 80%] Building C object Misc/CMakeFiles/Misc.dir/init_states.c.o [ 80%] [ 81%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_force.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/getpoi_bc.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/getpoi_bc.c: In function 'getpoi_bc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/getpoi_bc.c:44:12: warning: variable 'r' set but not used [-Wunused-but-set-variable] double r, xc, yc, zc, x, y, z; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/nlforce_par_gamma.c: In function 'nlforce_par_gamma': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/nlforce_par_gamma.c:31:32: warning: unused variable 'three' [-Wunused-variable] int idx, idx1, size, n, m, three = 3; ^ [ 81%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_gamma.c.o [ 81%] Building C object Misc/CMakeFiles/Misc.dir/get_index.c.o [ 81%] Building C object Misc/CMakeFiles/Misc.dir/get_te.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/get_te.c: In function 'get_te': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/get_te.c:75:26: warning: 'nrho_oppo' may be used uninitialized in this function [-Wmaybe-uninitialized] double *exc, *nrho, *nrho_oppo; ^ [ 82%] Building C object Misc/CMakeFiles/Misc.dir/minimage.c.o [ 82%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/app_smooth1.cpp.o [ 82%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/rand0.c.o [ 83%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/get_extrapolation_constants.c.o [ 83%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/output_wave.c.o [ 83%] Building C object Misc/CMakeFiles/Misc.dir/get_vtot_psi.c.o [ 83%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_header.c.o [ 83%] Building C object Misc/CMakeFiles/Misc.dir/my_mpi.c.o [ 84%] Building C object Misc/CMakeFiles/Misc.dir/blaswrappers.c.o [ 85%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/BandStructure.cpp.o [ 85%] Building C object Misc/CMakeFiles/Misc.dir/set_bc.c.o [ 85%] Building C object Misc/CMakeFiles/Misc.dir/cgen_prolong.c.o [ 85%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/wvfn_residual.c.o [ 85%] Building C object Misc/CMakeFiles/Misc.dir/mg_restrict_6.c.o [ 86%] Building C object Misc/CMakeFiles/Misc.dir/ATL_assert.c.o [ 86%] /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c: In function 'dbsint': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c:239:16: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int leftx, ilp1mx; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c: In function 'spli2d': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c:962:55: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int i, j, jj, km1, np1, left, lenq, kpkm2, iflag, ilp1mx; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c: In function 'spli3d': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c:1357:59: warning: variable 'ilp1mx' set but not used [-Wunused-but-set-variable] int i, j, jj, in, km1, np1, left, lenq, kpkm2, iflag, ilp1mx; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c: At top level: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/bsplines.c:1495:15: warning: 'dbs3vl' defined but not used [-Wunused-function] static double dbs3vl (double x, double y, double z__, int kx, ^ Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_avgd.c.o [ 86%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/bsplines.c.o [ 87%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/claim_ion.c.o [ 87%] [ 87%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/debug_write_rho_z.c.o Building C object Misc/CMakeFiles/Misc.dir/mg_prolong_MAX10.c.o [ 87%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_pdb.c.o [ 88%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_omega.c.o [ 88%] Building C object Misc/CMakeFiles/Misc.dir/init_pos.c.o [ 89%] Building C object Misc/CMakeFiles/Misc.dir/rmg_error.c.o [ 89%] [ 89%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/real_min_all.c.o Building C object Misc/CMakeFiles/Misc.dir/rmg_alloc.c.o [ 89%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/neb_relax.c.o [ 89%] Building C object Misc/CMakeFiles/Misc.dir/ions.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c: In function 'rmg_malloc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c:16:12: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' [-Wformat=] printf("\n memory size required %d x %d", n, size); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c: In function 'rmg_malloc_init': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c:26:13: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' [-Wformat=] printf("\n memory size required %d x %d", n, size); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c: In function 'rmg_calloc': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c:37:13: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' [-Wformat=] printf("\n memory size required %d x %d", n, size); ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c: In function 'rmg_alloc_initialize': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/rmg_alloc.c:101:9: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'void *' [-Wformat=] printf ("!!!! warning: requested initialization of data pointed to by '%s' not done.\n", ptr); ^ [ 90%] Building C object Misc/CMakeFiles/Misc.dir/sl_init_comm.c.o [ 90%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/app_smooth.cpp.o [ 90%] Building C object Misc/CMakeFiles/Misc.dir/get_opposite_occupancies.c.o [ 91%] [ 91%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/xbsmovie.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/init_gpu.c.o [ 91%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_zstates.c.o [ 91%] Building C object Misc/CMakeFiles/Misc.dir/get_opposite_eigvals.c.o [ 92%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/symmetry.c.o [ 92%] Building C object Misc/CMakeFiles/Misc.dir/fill_on.c.o [ 92%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/lbfgs.c.o [ 92%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/nlforce_par_Q.c.o [ 93%] [ 93%] Building C object Misc/CMakeFiles/Misc.dir/remap_3d.c.o /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/nlforce_par_Q.c: In function 'nlforce_par_Q': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/nlforce_par_Q.c:35:12: warning: unused variable 'tmp' [-Wunused-variable] double tmp; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/nlforce_par_Q.c:33:9: warning: unused variable 'idx1' [-Wunused-variable] int idx1, idx2, n, m, count, icount, size; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/remap_3d.c: In function 'remap_3d_create_plan': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/Misc/remap_3d.c:150:12: warning: unused variable 'newcomm' [-Wunused-variable] MPI_Comm newcomm; ^ [ 93%] Building C object Misc/CMakeFiles/Misc.dir/pack_3d.c.o Building C object Misc/CMakeFiles/Misc.dir/factor.c.o [ 95%] [ 95%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/rmg_lbfgs.c.o Building C object Misc/CMakeFiles/Misc.dir/get_tf_rho.c.o [ 95%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/test_overlap.c.o [ 95%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/write_avgv.c.o [ 95%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/move_ions.c.o [ 96%] [ 96%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/ranv.c.o Building C object RMG/Common/CMakeFiles/RMG_Common.dir/print_density_z_direction.c.o [ 96%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/set_pbc.c.o [ 97%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/pulay_rho.c.o [ 97%] Building CXX object RMG/Common/CMakeFiles/RMG_Common.dir/PartialGamma.cpp.o [ 97%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/fire.c.o [ 97%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/mg_prolong_6.c.o Linking CXX static library libMisc.a /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/print_density_z_direction.c: In function 'print_density_z_direction': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/print_density_z_direction.c:48:69: warning: variable 'max_grid_z' set but not used [-Wunused-but-set-variable] int min_grid_x, min_grid_y, min_grid_z, max_grid_x, max_grid_y, max_grid_z; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/print_density_z_direction.c:47:33: warning: variable 'zgrid' set but not used [-Wunused-but-set-variable] int p0_basis, xgrid, ygrid, zgrid; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/pulay_rho.c: In function 'pulay_rho': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/pulay_rho.c:68:12: warning: unused variable 'work' [-Wunused-variable] double work[MAX_STEPS*20]; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/pulay_rho.c:67:9: warning: unused variable 'lwork' [-Wunused-variable] int lwork = MAX_STEPS*20; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/fire.c: In function 'fire': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/fire.c:136:2: warning: value computed is not used [-Wunused-value] *n_count ++; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/pulay_rho.c:151:4: warning: 'trade_space' may be used uninitialized in this function [-Wmaybe-uninitialized] special_dot_product(fi, fj, trade_space, weight, N_x, N_y, N_z); ^ [ 98%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/partial_beta_fdiff.c.o [ 98%] Building C object RMG/Common/CMakeFiles/RMG_Common.dir/get_dipole.c.o [ 98%] Built target Misc /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp: In instantiation of 'void BandStructure(Kpoint<StateType>**, double*, double*, double*) [with KpointType = double]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:50:85: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:14: warning: unused variable 'istop' [-Wunused-variable] int idx, istop, st1, ist; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:21: warning: unused variable 'st1' [-Wunused-variable] int idx, istop, st1, ist; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:26: warning: unused variable 'ist' [-Wunused-variable] int idx, istop, st1, ist; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp: In instantiation of 'void BandStructure(Kpoint<StateType>**, double*, double*, double*) [with KpointType = std::complex<double>]': /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:51:100: required from here /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:14: warning: unused variable 'istop' [-Wunused-variable] int idx, istop, st1, ist; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:21: warning: unused variable 'st1' [-Wunused-variable] int idx, istop, st1, ist; ^ /u/system/bwjenkins/rmg-spp/rmg-release_2.1/RMG/Common/BandStructure.cpp:61:26: warning: unused variable 'ist' [-Wunused-variable] int idx, istop, st1, ist; ^ Linking CXX static library libRMG_Common.a [ 98%] Built target RMG_Common Scanning dependencies of target rmg-cpu [100%] Building CXX object CMakeFiles/rmg-cpu.dir/RMG/Common/Main.cpp.o Linking CXX executable rmg-cpu rm -rf ~/scratch/rmg-spp mkdir -p ~/scratch/rmg-spp cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs cp: cannot stat `/projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs': No such file or directory cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/ cp: cannot stat `/projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu': No such file or directory cd ~/scratch/rmg-spp cat run.pbs | grep -v aprun > myrun.pbs cat: run.pbs: No such file or directory echo "time aprun -n 400 -N 4 -d 8 -cc numa_node ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu 302waters.rmg_cpu" >> myrun.pbs cat -n myrun.pbs MYJOBID=`qsub myrun.pbs` qsub myrun.pbs [100%] Built target rmg-cpu 1 time aprun -n 400 -N 4 -d 8 -cc numa_node ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu 302waters.rmg_cpu ERROR: Neither 'nodes=<#nodes>:ppn=<#ppn>' nor 'procs=<#ppn>' attribute is specified in job submission. Please specify either '-l nodes=<#nodes>:ppn=<#ppn>' or '-l procs=<#procs>' to indicate the compute resources required for the job. qsub: Your job has been administratively rejected by the queueing system. qsub: There may be a more detailed explanation prior to this notice. echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID tail *.log > ~/rmg-spp/rmg.logtail.txt tail: cannot open `*.log' for reading: No such file or directory grep "real" z302water_cpu100.o* grep: z302water_cpu100.o*: No such file or directory MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1 egrep: z302water_cpu100.o*: No such file or directory echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime cat -n ~/rmg-spp/rmg.realtime MYJOBID= === RUNNING /u/staff/arnoldg/ior/wait_for.sh === /u/staff/arnoldg/ior/wait_for.sh: missing argument for jobid 1 YVALUE= [SSH] exit-status: 0 [rmg-spp] $ /bin/sh -xe /tmp/jenkins6802783953326840983.sh + scp 'BW_REMOTE:~/rmg-spp/*.txt' /var/lib/jenkins/workspace/rmg-spp Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Blue Waters Admin Team + scp 'BW_REMOTE:~/rmg-spp/rmg.realtime' /var/lib/jenkins/workspace/rmg-spp Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Blue Waters Admin Team Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/rmg-spp/rmg.realtime Finished: SUCCESS