Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/vpic-spp-jyc
executing script:

set -v
rm -rf vpic-spp
mkdir vpic-spp
cd  vpic-spp/
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz
tar xzvf ~arnoldg/vpic_spp_20161220_up_20180125.tar.gz
cat build_vpic_407 | sed -e s/"\# get vpic 407 from github"/"module load wget"/g > /tmp/buildvpic
cat /tmp/buildvpic | sed -e s/^wget/"wget --no-check-certificate"/g > /tmp/buildvpic2
cp /tmp/buildvpic2 ./build_vpic_407
chmod 755 build*
rm /tmp/buildvpic*
./build_vpic_407
cd runs/4_nodes
./build_input_deck test_4n.cxx

MYJOBID=`qsub bw.pbs`
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
cp vpic.* ~/vpic-spp/


grep "simulation time" vpic.err
MYSIMTIME=`grep time: vpic.err| cut -d: -f3` 
echo "YVALUE= $MYSIMTIME" > ~/vpic-spp/vpic.simtime
cat -n ~/vpic-spp/vpic.simtime

grep "real" vpic.err
MYREALTIME=`grep real vpic.err| cut -d' ' -f2` 
echo "YVALUE= $MYREALTIME" > ~/vpic-spp/vpic.realtime
cat -n ~/vpic-spp/vpic.realtime
rm -rf vpic-spp
mkdir vpic-spp
cd  vpic-spp/
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz
#tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz
tar xzvf ~arnoldg/vpic_spp_20161220_up_20180125.tar.gz
cat build_vpic_407 | sed -e s/"\# get vpic 407 from github"/"module load wget"/g > /tmp/buildvpic
cat /tmp/buildvpic | sed -e s/^wget/"wget --no-check-certificate"/g > /tmp/buildvpic2
cp /tmp/buildvpic2 ./build_vpic_407
chmod 755 build*
rm /tmp/buildvpic*
./build_vpic_407
--2018-02-27 10:08:44--  https://github.com/vpic/vpic/archive/v407.zip
Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112
Connecting to github.com (github.com)|192.30.253.113|:443... connected.
OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Unable to establish SSL connection.
mv: cannot stat `v407': No such file or directory
unzip:  cannot find or open v407.zip, v407.zip.zip or v407.zip.ZIP.
rm: cannot remove `v407.zip': No such file or directory
./build_vpic_407: line 12: cd: vpic-407: No such file or directory
tar (child): ../spp_changes_patch.tar.gz: Cannot open: No such file or directory
tar (child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error is not recoverable: exiting now
build_vpic_407
ideck_bld_template
README
runs/
runs/4_nodes/
runs/4_nodes/build_input_deck
runs/4_nodes/bw.pbs
runs/4_nodes/.bw.pbs.old
runs/4_nodes/test_4n.cxx
runs/144_nodes/
runs/144_nodes/build_input_deck
runs/144_nodes/bw.pbs
runs/144_nodes/.bw.pbs.old
runs/144_nodes/test_144n.cxx
spp_changes_patch.tar.gz
imake: No such file or directory
imake: No description file.
  Stop.
gmake: *** No rule to make target `clean'.  Stop.
gmake: *** No rule to make target `all'.  Stop.
cat: ideck_bld_template: No such file or directory
cd runs/4_nodes
./build_input_deck test_4n.cxx
bash: line 15: ./build_input_deck: No such file or directory

MYJOBID=`qsub bw.pbs`
qsub bw.pbs
INFO: Job submitted to account: jnc
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
MYJOBID=230629.jyc
=== RUNNING /u/staff/arnoldg/ior/wait_for.sh ===
Tue Feb 27 10:08:46 CST 2018: waiting for 230629.jyc to finish
Build was aborted
Aborted by arnoldg
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.simtime
Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.realtime
Finished: ABORTED