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Started by user rhaas Building on master in workspace /var/lib/jenkins/workspace/Cactus Updating https://github.com/rhaas80/SWTools-BWCI/trunk/EinsteinToolkit@HEAD at revision HEAD UU 2016_05/cle5.2_gnu5.1.0/retest At revision 34 [Cactus] $ /bin/sh -xe /tmp/hudson6638497666052822264.sh + /usr/local/bin/jenkins_sync /var/lib/jenkins/workspace/Cactus/EinsteinToolkit NCSA JYC System Access status: User Access UnRestricted. Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. executing script: SW_CONFIG="/scratch/system/bwjenkins/sw_config" PYTHONPATH="/sw/tools/bin:/sw/tools/bin:$PYTHONPATH" SW_WORKDIR="/scratch/system/bwjenkins/sw_workdir" SW_ROOT="/scratch/system/bwjenkins/tests" PATH="/sw/tools/bin:/sw/tools/bin:$PATH" echo $PATH $SW_CONFIG $PYTHONPATH > /dev/null export SW_CONFIG=$SW_CONFIG export SW_WORKDIR=$SW_WORKDIR cd $SW_ROOT cd EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 pwd -P swbuildwait ls -l /u/staff/rhaas/bin/swtestwait || true ls -l # echo -n "YVALUE=" >builderrorcount && ( grep --count '^error:' <make.log >>builderrorcount || [ $? -eq 1 ] ) # echo -n "YVALUE=" >buildwarningcount && ( grep --count '^warning:' <make.log >>buildwarningcount || [ $? -eq 1 ] ) /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 swbuild -s -a EinsteinToolkit -v 2016_05 -b cle5.2_gnu5.1.0 set -e # abort on errors # clear out old installation to prevent potential libtool chmod # commands from failing when reinstalled by another person rm -rf $ET_SRCDIR #clear out status file since re-making rm -f status cd $SW_BLDDIR # GNU tar exists with 2 for actual errors and 1 for "file changed while # reading" yet 2 is treated specially by swtools tar -xzf /sw/sources/EinsteinToolkit/${ET_VER}/${ET_SRCDIR}.tar.gz || exit 1 cd $ET_SRCDIR simfactory/bin/sim setup-silent --machine bluewaters Here we will define some necessary Simulation Factory defaults. Determining local machine name: jyc1.ncsa.illinois.edu Creating machine jyc1.ncsa.illinois.edu from generic: machine jyc1.ncsa.illinois.edu [/mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/repos/simfactory2/mdb/machines/jyc1.ncsa.illinois.edu.ini] created successfully --------------------SUMMARY--------------------: [default] user = bwjenkins email = bwjenkins allocation = NO_ALLOCATION ------------------END SUMMARY------------------: Contents successfully written to /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/repos/simfactory2/etc/defs.local.ini cat >>simfactory/etc/defs.local.ini <<EOF [bluewaters] sourcebasedir = $SW_BLDDIR basedir = $SW_WORKDIR allocation = fyy submitpattern=(\d+[.]jyc) rsynccmd=rsync EOF # even when the build itself fails we still want to compute the number of error # messages to plot them in Jenkins #simfactory/bin/sim build --machine bluewaters --thornlist manifest/einsteintoolkit.th 2>&1 | tee make.log simfactory/bin/sim build --machine bluewaters --thornlist /dev/null 2>&1 | tee make.log Using configuration: sim Reconfiguring sim Writing configuration to: /scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim/OptionList Cactus - version: 4.2.3 Reconfiguring sim. Using configuration options from configure line Setting fds to '4,5 -j --' End of options from configure line Adding configuration options from '/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim/OptionList'... Setting VERSION to 'bluewaters-gnu-2016-01-26' Setting CPP to 'cpp' Setting FPP to 'cpp' Setting CC to 'cc' Setting CXX to 'CC' Setting CUCC to 'nvcc' Setting F77 to 'ftn' Setting F90 to 'ftn' Setting CPPFLAGS to '-g3 -DDISABLE_AVX' Setting FPPFLAGS to '-g3 -traditional' Setting CFLAGS to '-g3 -m128bit-long-double -std=gnu99 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib' Setting CXXFLAGS to '-g3 -m128bit-long-double -std=gnu++11 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib' Setting CUCCFLAGS to '-g -m64 -arch=sm_30 --ptxas-options=-v' Setting F90FLAGS to '-g3 -m128bit-long-double -fcray-pointer -ffixed-line-length-none' Setting F77FLAGS to '-g3 -m128bit-long-double -fcray-pointer -ffixed-line-length-none' Setting LIBS to 'gfortran dl' Setting C_LINE_DIRECTIVES to 'yes' Setting F_LINE_DIRECTIVES to 'yes' Setting VECTORISE to 'yes' Setting VECTORISE_ALIGNED_ARRAYS to 'no' Setting VECTORISE_INLINE to 'yes' Setting DEBUG to 'no' Setting CPP_DEBUG_FLAGS to '-DCARPET_DEBUG' Setting FPP_DEBUG_FLAGS to '-DCARPET_DEBUG' Setting C_DEBUG_FLAGS to '-ftrapv -fstack-protector-all -fbounds-check' Setting CXX_DEBUG_FLAGS to '-ftrapv -fstack-protector-all -fbounds-check' Setting CUCC_DEBUG_FLAGS to '' Setting F77_DEBUG_FLAGS to '-ftrapv -fstack-protector-all -fcheck=bounds,do,mem,pointer,recursion -finit-character=65 -finit-integer=42424242 -finit-real=nan' Setting F90_DEBUG_FLAGS to '-ftrapv -fstack-protector-all -fcheck=bounds,do,mem,pointer,recursion -finit-character=65 -finit-integer=42424242 -finit-real=nan' Setting OPTIMISE to 'yes' Setting CPP_OPTIMISE_FLAGS to '' Setting FPP_OPTIMISE_FLAGS to '' Setting C_OPTIMISE_FLAGS to '-Ofast -funroll-loops' Setting CXX_OPTIMISE_FLAGS to '-Ofast -funroll-loops' Setting CUCC_OPTIMISE_FLAGS to '-O3 -use_fast_math' Setting F90_OPTIMISE_FLAGS to '-Ofast -funroll-loops' Setting F77_OPTIMISE_FLAGS to '-Ofast -funroll-loops' Setting PROFILE to 'no' Setting CPP_PROFILE_FLAGS to '' Setting FPP_PROFILE_FLAGS to '' Setting C_PROFILE_FLAGS to '-pg' Setting CXX_PROFILE_FLAGS to '-pg' Setting F77_PROFILE_FLAGS to '-pg' Setting F90_PROFILE_FLAGS to '-pg' Setting OPENMP to 'yes' Setting CPP_OPENMP_FLAGS to '-fopenmp' Setting FPP_OPENMP_FLAGS to '-fopenmp' Setting C_OPENMP_FLAGS to '-fopenmp' Setting CXX_OPENMP_FLAGS to '-fopenmp' Setting F77_OPENMP_FLAGS to '-fopenmp' Setting F90_OPENMP_FLAGS to '-fopenmp' Setting WARN to 'yes' Setting CPP_WARN_FLAGS to '-Wall' Setting FPP_WARN_FLAGS to '-Wall' Setting C_WARN_FLAGS to '-Wall' Setting CXX_WARN_FLAGS to '-Wall' Setting CUCC_WARN_FLAGS to '-Xcompiler -Wall' Setting F90_WARN_FLAGS to '-Wall' Setting F77_WARN_FLAGS to '-Wall' Setting BLAS_DIR to '/opt/acml/5.3.1/gfortran64_fma4_mp/lib' Setting BLAS_LIBS to 'acml_mp' Setting BOOST_DIR to '/sw/xe/boost/1.53.0/sles11.3_gnu4.8.2' Setting FFTW3_DIR to '/opt/fftw/3.3.4.6/interlagos' Setting GSL_DIR to '/sw/xe/gsl/1.15/cnl4.1_gnu4.7.2' Setting HDF5_DIR to '/opt/cray/hdf5/1.8.14/GNU/49' Setting HWLOC_DIR to 'BUILD' Setting HWLOC_EXTRA_LIBS to 'numa' Setting LAPACK_DIR to '/opt/acml/5.3.1/gfortran64_fma4_mp/lib' Setting LAPACK_LIBS to 'acml_mp' Setting MPI_DIR to 'NONE' Setting OPENBLAS_DIR to '/opt/acml/5.3.1/gfortran64_fma4_mp' Setting OPENBLAS_LIBS to 'acml_mp' Setting OPENCL_DIR to '/opt/nvidia/cudatoolkit/7.0.28-1.0502.10742.5.1' Setting OPENCL_INC_DIRS to '/opt/nvidia/cudatoolkit/7.0.28-1.0502.10742.5.1/include' Setting OPENCL_LIB_DIRS to '/opt/nvidia/cudatoolkit/7.0.28-1.0502.10742.5.1lib64' Setting OPENCL_LIBS to 'OpenCL' Setting PAPI_DIR to '/opt/cray/papi/5.4.1.3' Setting PAPI_LIB_DIRS to '/opt/cray/papi/5.4.1.3/lib64' Setting PETSC_DIR to '/opt/cray/petsc/3.6.1.0/real/GNU/49/interlagos' Setting PTHREADS_DIR to 'NO_BUILD' End of options from '/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim/OptionList'. creating cache ./config.cache checking host system type... x86_64-unknown-linux-gnu checking whether make sets ${MAKE}... yes checking whether the C compiler (cc -g3 -m128bit-long-double -std=gnu99 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib ) works... yes checking whether the C compiler (cc -g3 -m128bit-long-double -std=gnu99 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib ) is a cross-compiler... no checking whether we are using GNU C... yes checking whether the C++ compiler (CC -g3 -m128bit-long-double -std=gnu++11 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib ) works... yes checking whether the C++ compiler (CC -g3 -m128bit-long-double -std=gnu++11 -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4/lib -Wl,-rpath,/opt/acml/5.3.1/gfortran64_fma4_mp/lib ) is a cross-compiler... no checking whether we are using GNU C++... yes checking for ranlib... ranlib checking for perl... perl checking for gtar... no checking for tar... tar checking for xargs... xargs checking for gzip... gzip checking for gpatch... no checking for patch... patch checking for git... git checking for ar... ar checking for mkdir... mkdir checking for bash... /bin/sh Setting CACHELINE_BYTES to 64 Setting CACHE_SIZE to 512*1024 bytes checking how to run the C preprocessor... cpp checking for ANSI C header files... yes checking for C99 features... yes checking for M_PI... yes checking for C strdup... yes checking for C++ strdup... yes checking whether byte ordering is bigendian... no checking size of long long... 8 checking size of long int... 8 checking size of int... 4 checking size of short int... 2 checking size of long double... 16 checking size of double... 8 checking size of float... 4 checking size of char *... 8 checking for the null device... /dev/null checking for gethostbyname... yes checking whether mode_t is defined... yes checking for availability of gettimeofday timing... yes checking if gettimeofday needs timezone... yes checking for availability of getrusage timing... yes checking for availability of _ftime timing... no checking for time.h... yes checking for sys/time.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for string.h... yes checking for assert.h... yes checking for tgmath.h... yes checking for sys/stat.h... yes checking for getopt.h... yes checking for dirent.h... yes checking for c_asm.h... no checking for intrinsics.h... no checking for mach/mach_time.h... no checking for regex.h... yes checking for sys/filio.h... no checking for sys/ioctl.h... yes checking for sys/socket.h... yes checking for netinet/in.h... yes checking for netdb.h... yes checking for arpa/inet.h... yes checking for winsock2.h... no checking for crypt.h... yes checking for signal.h... yes checking for malloc.h... yes checking for sched.h... yes checking for execinfo.h... yes checking whether time.h and sys/time.h may both be included... yes checking whether socklen_t is defined... yes checking whether SOCKET is defined... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking for mallinfo... yes checking for mallopt... yes checking whether M_MMAP_THRESHOLD is defined... yes checking for sched_getaffinity... yes checking for getpid... yes checking if __int64 is defined... no checking if __int128 is defined... yes checking for vector... yes checking for vector.h... no checking for getopt_long_only... yes checking for working const... yes checking for C inline... inline checking for C static inline... static inline checking for C restrict... restrict checking for C++ restrict... __restrict__ checking for C++ copysign... std::copysign checking for C++ fpclassify... std::fpclassify checking for C++ isfinite... std::isfinite checking for C++ isinf... std::isinf checking for C++ isnan... std::isnan checking for C++ isnormal... std::isnormal checking for C++ signbit... std::signbit checking for C _Pragma... yes checking for C function __attribute__((__noinline__))... yes checking for C++ function __attribute__((__noinline__))... yes checking for C++ member function __attribute__((__noinline__))... yes checking for C function __attribute__((__always_inline__))... yes checking for C++ function __attribute__((__always_inline__))... yes checking for C++ member function __attribute__((__always_inline__))... yes checking for C __attribute__((__unused__))... yes checking for C++ __attribute__((__unused__))... yes checking for C __attribute__((__aligned__(...)))... yes checking for C++ __attribute__((__aligned__(...)))... yes checking for C __attribute__((__cold__))... yes checking for C++ __attribute__((__cold__))... yes checking for C __attribute__((__hot__))... yes checking for C++ __attribute__((__hot__))... yes checking for C __attribute__((__format__(printf, 1, 2)))... yes checking for C++ __attribute__((__format__(printf, 1, 2)))... yes checking for C __attribute__((__noreturn__))... yes checking for C++ __attribute__((__noreturn__))... yes checking for C __attribute__((__nonnull__))... yes checking for C++ __attribute__((__nonnull__))... yes checking for C __attribute__((__returns_nonnull__))... yes checking for C++ __attribute__((__returns_nonnull__))... yes checking for C __builtin_expect... yes checking for C++ __builtin_expect... yes checking for C __builtin_unreachable... yes checking for C++ __builtin_unreachable... yes checking for C __builtin_assume_aligned... yes checking for C++ __builtin_assume_aligned... yes checking for C++ static_assert... yes checking for C++ auto specifier... yes checking for C++ lambda expressions... yes checking for C++ range-based for statements... yes checking for Fortran REAL*4... yes checking for Fortran REAL*8... yes checking for Fortran REAL*16... yes checking for Fortran COMPLEX*8... yes checking for Fortran COMPLEX*16... yes checking for Fortran COMPLEX*32... yes checking for cxxabi.h... yes checking for __cxa_demangle... yes checking for Dl_info.dli_sname... yes checking for dladdr... yes checking for backtrace... yes checking for backtrace_symbols... yes checking for crypt... no checking for crypt in library crypt... yes checking for finite in header math.h and library m... yes checking for copysign in header math.h and library m... yes checking for fpclassify in header math.h and library m... yes checking for isfinite in header math.h and library m... yes checking for isinf in header math.h and library m... yes checking for isnan in header math.h and library m... yes checking for isnormal in header math.h and library m... yes checking for signbit in header math.h and library m... yes checking for mkstemp... yes checking for va_copy... yes creating cctk_Archdefs.h creating make.arch.defn creating cctk_Extradefs.h creating make.extra.defn updating cache ./config.cache creating ./config.status creating make.config.defn creating make.config.deps creating make.config.rules creating cctk_Config.h Determining number of fortran underscores... Compiling test file with ftn -g3 -m128bit-long-double -fcray-pointer -ffixed-line-length-none ... Lowercase - One trailing underscore Compiling test file with ftn -g3 -m128bit-long-double -fcray-pointer -ffixed-line-length-none ... Lowercase - One trailing underscore Use make sim to build the configuration. Complete rebuild required Cleaning sim Cleaning configuration sim Deleting all built files in /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim Warning: default submit script contents have changed Updated script file for configuration sim Warning: default run script contents have changed Updated runscript file for configuration sim Updated thorn list for configuration sim Building sim Cactus - version: 4.2.3 Building configuration sim Processing CCL files Reading ThornList... Parsing configuration files... Parsing interface files... Cactus Implements: Cactus 0 Public, 0 Protected, 0 Private variable groups Parsing parameter files... Cactus 0 Global, 6 Restricted, 13 Private parameters Parsing schedule files... Cactus 0 schedule blocks. Running any thorn-provided configuration scripts... Checking consistency... Creating Thorn-Flesh bindings... Creating implementation bindings... Creating parameter bindings... Creating variable bindings... Creating schedule bindings... Creating function bindings... CST finished. Checking status of thorn Cactus Checking status of thorn CactusBindings COMPILING configs/sim/bindings/Implementations/ImplementationBindings.c COMPILING configs/sim/bindings/Functions/AliasedFunctions.c COMPILING configs/sim/bindings/Variables/BindingsVariables.c COMPILING configs/sim/bindings/Variables/Cactus.c COMPILING configs/sim/bindings/Functions/IsFunctionAliased.c COMPILING src/schedule/ScheduleSorter.c COMPILING configs/sim/bindings/Parameters/BindingsParameters.c COMPILING src/schedule/ScheduleCreater.c COMPILING src/schedule/ScheduleTraverse.c COMPILING configs/sim/bindings/Functions/RegisterThornFunctions.c COMPILING configs/sim/bindings/Schedule/ScheduleCactus.c COMPILING configs/sim/bindings/Parameters/Global.c COMPILING configs/sim/bindings/Schedule/BindingsSchedule.c COMPILING src/IO/IOMethods.c COMPILING src/comm/CactusSync.c COMPILING src/IO/OverloadIO.c COMPILING configs/sim/bindings/Parameters/Cactus_Parameters.c COMPILING configs/sim/bindings/Schedule/BindingsParameterRecovery.c COMPILING src/comm/CactusDefaultComm.c COMPILING src/comm/OverloadComm.c COMPILING src/comm/Interp.c COMPILING src/comm/Reduction.c COMPILING src/IO/FortranBindingsIO.c Creating /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim/lib/libthorn_CactusBindings.a In file included from /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/comm/OverloadComm.c:20:0: /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h: In function 'CCTKi_DummyExit': /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:92:3: warning: function declared 'noreturn' has a 'return' statement return 0; \ ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:84:59: note: in expansion of macro '__OVERLOADABLE_DUMMY' #define _OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) __OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:83:36: note: in expansion of macro '_OVERLOADABLE_DUMMY' #define OVERLOADABLE_DUMMY(name) _OVERLOADABLE_DUMMY(OVERLOADABLE_PREFIX, OVERLOADABLE_DUMMY_PREFIX, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/comm/OverloadComm.c:151:28: note: in expansion of macro 'OVERLOADABLE_DUMMY' #define OVERLOADABLE(name) OVERLOADABLE_DUMMY(name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h:87:1: note: in expansion of macro 'OVERLOADABLE' OVERLOADABLE(Exit) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h: In function 'CCTKi_DummyAbort': /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:92:3: warning: function declared 'noreturn' has a 'return' statement return 0; \ ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:84:59: note: in expansion of macro '__OVERLOADABLE_DUMMY' #define _OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) __OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:83:36: note: in expansion of macro '_OVERLOADABLE_DUMMY' #define OVERLOADABLE_DUMMY(name) _OVERLOADABLE_DUMMY(OVERLOADABLE_PREFIX, OVERLOADABLE_DUMMY_PREFIX, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/comm/OverloadComm.c:151:28: note: in expansion of macro 'OVERLOADABLE_DUMMY' #define OVERLOADABLE(name) OVERLOADABLE_DUMMY(name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h:88:1: note: in expansion of macro 'OVERLOADABLE' OVERLOADABLE(Abort) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h: In function 'CCTKi_DummyExit': /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:92:3: warning: 'noreturn' function does return return 0; \ ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:84:59: note: in expansion of macro '__OVERLOADABLE_DUMMY' #define _OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) __OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:83:36: note: in expansion of macro '_OVERLOADABLE_DUMMY' #define OVERLOADABLE_DUMMY(name) _OVERLOADABLE_DUMMY(OVERLOADABLE_PREFIX, OVERLOADABLE_DUMMY_PREFIX, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/comm/OverloadComm.c:151:28: note: in expansion of macro 'OVERLOADABLE_DUMMY' #define OVERLOADABLE(name) OVERLOADABLE_DUMMY(name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h:87:1: note: in expansion of macro 'OVERLOADABLE' OVERLOADABLE(Exit) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h: In function 'CCTKi_DummyAbort': /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:92:3: warning: 'noreturn' function does return return 0; \ ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:84:59: note: in expansion of macro '__OVERLOADABLE_DUMMY' #define _OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) __OVERLOADABLE_DUMMY(prefix, dummy_prefix, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/OverloadMacros.h:83:36: note: in expansion of macro '_OVERLOADABLE_DUMMY' #define OVERLOADABLE_DUMMY(name) _OVERLOADABLE_DUMMY(OVERLOADABLE_PREFIX, OVERLOADABLE_DUMMY_PREFIX, name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/comm/OverloadComm.c:151:28: note: in expansion of macro 'OVERLOADABLE_DUMMY' #define OVERLOADABLE(name) OVERLOADABLE_DUMMY(name) ^ /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/src/include/CommOverloadables.h:88:1: note: in expansion of macro 'OVERLOADABLE' OVERLOADABLE(Abort) ^ COMPILING configs/sim/bindings/build/Cactus/cctk_ThornBindings.c COMPILING src/util/CactusTimers.c COMPILING src/util/File.c COMPILING src/util/ParseFile.c COMPILING src/util/RegisterKeyedFunction.c COMPILING src/util/StoreKeyedData.c COMPILING src/util/StoreNamedData.c COMPILING src/util/Misc.c COMPILING src/util/StoreHandledData.c COMPILING src/util/SKBinTree.c COMPILING src/util/Hash.c COMPILING src/util/Malloc.c COMPILING src/util/Math.c COMPILING src/util/String.c COMPILING src/util/StringList.c COMPILING src/util/Time.c COMPILING src/util/Table.c COMPILING src/util/Network.c COMPILING src/main/ActiveThorns.c COMPILING src/main/Banner.c COMPILING src/main/CactusDefaultInitialise.c COMPILING src/main/CactusDefaultEvolve.c COMPILING src/main/CactusDefaultShutdown.c COMPILING src/piraha/AutoGrammar.cc COMPILING src/main/CactusDefaultMainLoopIndex.c COMPILING src/piraha/Bracket.cc COMPILING src/main/CommandLine.c COMPILING src/main/CallStartupFunctions.c COMPILING src/piraha/Dot.cc COMPILING src/main/Complex.c COMPILING src/piraha/End.cc COMPILING src/piraha/Grammar.cc COMPILING src/main/ConfigData.c COMPILING src/main/Coord.c COMPILING src/main/DebugDefines.c COMPILING src/main/DefaultTimers.c COMPILING src/main/Dummies.c COMPILING src/piraha/Group.cc COMPILING src/main/flesh.cc COMPILING src/piraha/ILiteral.cc COMPILING src/piraha/Literal.cc COMPILING src/main/FortranWrappers.c COMPILING src/main/GHExtensions.c COMPILING src/main/Groups.c COMPILING src/main/GroupsOnGH.c COMPILING src/piraha/Lookup.cc COMPILING src/piraha/Matcher.cc COMPILING src/piraha/Multi.cc COMPILING src/main/InitialiseCactus.c COMPILING src/piraha/Or.cc COMPILING src/main/InitialiseDataStructures.c COMPILING src/piraha/ReParse.cc COMPILING src/main/MainUtils.c COMPILING src/piraha/Seq.cc COMPILING src/piraha/Start.cc COMPILING src/main/Names.c COMPILING src/main/OverloadMain.c COMPILING src/main/Parameters.c COMPILING src/main/ProcessCommandLine.c COMPILING src/piraha/Call.cc COMPILING src/piraha/smart_ptr.cc COMPILING src/piraha/Boundary.cc COMPILING src/main/ProcessEnvironment.c COMPILING src/main/ProcessParameterDatabase.c COMPILING src/piraha/NegLookAhead.cc COMPILING src/main/ScheduleInterface.c COMPILING src/main/SetParams.c COMPILING src/main/ShutdownCactus.c COMPILING src/main/Subsystems.c COMPILING src/main/Termination.c COMPILING src/main/Traverse.c COMPILING src/main/WarnLevel.c Creating /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/configs/sim/lib/libthorn_Cactus.a Creating cactus_sim in /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05/exe from Done creating cactus_sim. All done ! Building utilities for sim Building utilities for sim Done. # HACK: make it possible to execute some commands once run finishes # the nicer way is of course to define out own SubmitScript or at least to make # one *before* building the configuration but that is actually harder to do mv configs/sim/SubmitScript configs/sim/SubmitScript.orig gawk '/^[^#]/&&!wrotetrap { print "trap \"rm @SW_BLDDIR@/.running\" EXIT" wrotetrap=1 } {print}' configs/sim/SubmitScript.orig > configs/sim/SubmitScript cat <<EOF >>configs/sim/SubmitScript if grep --silent 'Number failed *-> 0' @RUNDIR@/TEST/sim/summary.log ; then echo verified >@SW_BLDDIR@/status else echo unverified >@SW_BLDDIR@/status if " EOF ############################### if this far, return 0 exit 0 ++ readlink -f . + realpath=/mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 ++ basename /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 + build=cle5.2_gnu5.1.0 ++ dirname /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 + version_dir=/mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05 ++ basename /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05 + version=2016_05 ++ dirname /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05 + app_dir=/mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit ++ basename /mnt/abc/scratch/system/bwjenkins/tests/EinsteinToolkit + app=EinsteinToolkit + pwd + swtest -a EinsteinToolkit -v 2016_05 -b cle5.2_gnu5.1.0 -s --debug + tee test.log ['/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05'] /scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/rebuild : passed (0) total 48 -rw-rw-r-- 1 bwjenkins BW_System 26181 Sep 1 19:14 build.log -rw-rw-r-- 1 bwjenkins BW_System 391 Aug 23 09:20 build-notes drwxrwxr-x 9 bwjenkins BW_System 4096 Sep 1 19:13 ET_2016_05 -rwxrwxr-x 1 bwjenkins BW_System 2550 Aug 30 19:26 rebuild lrwxrwxrwx 1 bwjenkins BW_System 7 Aug 23 09:20 relink -> rebuild -rw-rw-r-- 1 bwjenkins BW_System 447 Aug 30 17:18 remodule -rwxrwxr-x 1 bwjenkins BW_System 2065 Sep 1 19:11 retest /scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0 #clear out status file since re-testing rm -f status #cd ${SW_WORKDIR} cd $ET_SRCDIR : ${TESTJOBNAME=$ET_VER-swretest-$(date +%s)-$$} date +%s simfactory/bin/sim submit --machine bluewaters --testsuite --select-test=CactusWave/WaveToyC --walltime 4:0:0 --procs 8 --num-threads 4 --define SW_BLDDIR $PWD $TESTJOBNAME >submit.log && \ gawk -vrc=1 '/^Submit finished, job id is/{print $6;rc=0;exit} END{exit rc}' <submit.log >../.running Warning: Current Working directory does not match Cactus sourcetree, changing to /scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/ET_2016_05 Warning: simulation "2016_05-swretest-1472775246-16309" does not exist or is not readable Warning: Total number of threads and number of cores per node are inconsistent: procs=8, ppn-used=32 (procs must be an integer multiple of ppn-used) cd .. # qsub returns 0 on successful job launch, so if failure return 1 if [ $? -ne 0 ]; then echo "Error submitting job" rm -f .running exit 1 else echo "Job submitted" cat submit.log exit 2 fi Job submitted cat: submit.log: No such file or directory + ls -l + '[' '!' -e .running ']' ++ grep '^\w[0-9]' .running + jobid=170343.jyc + true + qstat 170343.jyc + '[' 0 -ne 0 ']' ++ qstat -f 170343.jyc ++ grep job_state ++ awk '{print $3}' + job_state=R + '[' R == R ']' + echo 'Submitted job 170343.jyc is running. Following .running ... ' + break + trackPID=25078 + true + tail -f .running --pid=25078 + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 ['/scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05'] /scratch/system/bwjenkins/tests/EinsteinToolkit/2016_05/cle5.2_gnu5.1.0/retest : batch submitted (2) total 49 -rw-rw-r-- 1 bwjenkins BW_System 26181 Sep 1 19:14 build.log -rw-rw-r-- 1 bwjenkins BW_System 391 Aug 23 09:20 build-notes drwxrwxr-x 9 bwjenkins BW_System 4096 Sep 1 19:14 ET_2016_05 -rwxrwxr-x 1 bwjenkins BW_System 2550 Aug 30 19:26 rebuild lrwxrwxrwx 1 bwjenkins BW_System 7 Aug 23 09:20 relink -> rebuild -rw-rw-r-- 1 bwjenkins BW_System 447 Aug 30 17:18 remodule -rwxrwxr-x 1 bwjenkins BW_System 2065 Sep 1 19:11 retest -rw-rw-r-- 1 bwjenkins BW_System 1265 Sep 1 19:14 test.log Submitted job 170343.jyc is running. Following .running ... 170343.jyc + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 + true + qstat 170343.jyc + '[' -e .running ']' + '[' 0 -eq 0 ']' + sleep 30 Build was aborted Aborted by rhaas Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/Cactus/builderrorcount Saving plot series data from: /var/lib/jenkins/workspace/Cactus/buildwarningcount Finished: ABORTED