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Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/SPP-PPM-768O2-18XEs-jyc
executing script:

# Moving to the building folder
cd ~
tar xvf ~arnoldg/ppm.tar
cd SPP-PPM/PPM-768O2-18XEs
ls -al

# Updating modules
module unload darshan
/u/vendor/cray/dalton/modulefiles
module unload PrgEnv-cray
module load PrgEnv/cray-18_06-cuda-9.1
module load craype-hugepages2M
module list

# Building the binary
rm -rf PPM2F-768O2 *.o *.dat iq.h
./compile-JK-noPapi

# Submitting the job script
MYJOBID=`qsub run-PPM2F-768O2`
echo MYJOBID=$MYJOBID

# Waiting for the job completion
cat -n wait_for.sh
./wait_for.sh $MYJOBID

# Computing Flop/s
python FLOPS-PPM-JK-v02.py $MYJOBID 18



bash: line 9: /u/vendor/cray/dalton/modulefiles: is a directory
SPP-PPM/PPM-768O2-18XEs/
SPP-PPM/PPM-768O2-18XEs/compile-JK-noPapi
SPP-PPM/PPM-768O2-18XEs/stderrout.6422331.bw
SPP-PPM/PPM-768O2-18XEs/PPM-768O2.o6422331
SPP-PPM/PPM-768O2-18XEs/generate-MPICH_RANK_ORDER_V2
SPP-PPM/PPM-768O2-18XEs/PPM-768O2.o8095607
SPP-PPM/PPM-768O2-18XEs/stderrout.6413096.bw
SPP-PPM/PPM-768O2-18XEs/PPM-768O2.o6413794
SPP-PPM/PPM-768O2-18XEs/DATA768O2.8095607.bw
SPP-PPM/PPM-768O2-18XEs/PPM2F-tp3-5-1-12-ICF-short-loops.s
SPP-PPM/PPM-768O2-18XEs/flops-PPM2F-768O2
SPP-PPM/PPM-768O2-18XEs/cio.o
SPP-PPM/PPM-768O2-18XEs/PPM4Fperf.ppm.6413794.bw
SPP-PPM/PPM-768O2-18XEs/PPM2F-768O2
SPP-PPM/PPM-768O2-18XEs/PPM4Fperf.ppm.8095607.bw
SPP-PPM/PPM-768O2-18XEs/stderrout.6422876.bw
SPP-PPM/PPM-768O2-18XEs/source_me_JK
SPP-PPM/PPM-768O2-18XEs/cio.c
SPP-PPM/PPM-768O2-18XEs/PPM2F-tp3-5-1-12-ICF-short-loops.F
SPP-PPM/PPM-768O2-18XEs/PPM2F-tp3-5-1-12-ICF-short-loops.o
SPP-PPM/PPM-768O2-18XEs/run-PPM2F-768O2
SPP-PPM/PPM-768O2-18XEs/iq.h
SPP-PPM/PPM-768O2-18XEs/PPM4Fperf.ppm.6413096.bw
SPP-PPM/PPM-768O2-18XEs/DATA768O2.6413794.bw
SPP-PPM/PPM-768O2-18XEs/wait_for.sh
SPP-PPM/PPM-768O2-18XEs/PPM-768O2.o6422876
SPP-PPM/PPM-768O2-18XEs/DATA768O2.6422331.bw
SPP-PPM/PPM-768O2-18XEs/stderrout.6413794.bw
SPP-PPM/PPM-768O2-18XEs/PPM-768O2.o6413096
SPP-PPM/PPM-768O2-18XEs/iq768O2.h
SPP-PPM/PPM-768O2-18XEs/PPM2F-tp3-5-1-12-ICF-short-loops.lst
SPP-PPM/PPM-768O2-18XEs/FLOPS-PPM-JK-v02.py
SPP-PPM/PPM-768O2-18XEs/DATA768O2.6413096.bw
SPP-PPM/PPM-768O2-18XEs/PPM4Fperf.ppm.6422876.bw
SPP-PPM/PPM-768O2-18XEs/DATA768O2.6422876.bw
SPP-PPM/PPM-768O2-18XEs/PPM4Fperf.ppm.6422331.bw
SPP-PPM/PPM-768O2-18XEs/stderrout.8095607.bw
total 14054
drwxr-xr-x 2 bwjenkins BW_System    12288 Feb 14 07:31 .
drwxr-xr-x 3 bwjenkins BW_System     4096 Feb 14 07:43 ..
-rw-r--r-- 1 bwjenkins BW_System     1255 Mar 29  2017 cio.c
-rw-r--r-- 1 bwjenkins BW_System     4088 Feb 14 07:31 cio.o
-rwxr-xr-x 1 bwjenkins BW_System      381 Mar 29  2017 compile-JK-noPapi
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 14 07:44 DATA768O2.229383.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229383.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 14 11:11 DATA768O2.229402.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229402.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 14 11:36 DATA768O2.229407.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229407.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 14 12:02 DATA768O2.229408.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229408.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 16 16:22 DATA768O2.229658.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229658.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 19 17:16 DATA768O2.229889.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229889.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 19 17:53 DATA768O2.229896.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229896.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 20 08:14 DATA768O2.229976.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229976.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 20 09:30 DATA768O2.229984.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229984.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 20 09:52 DATA768O2.229990.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229990.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 20 11:03 DATA768O2.229998.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.229998.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 20 13:59 DATA768O2.230013.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230013.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 21 12:56 DATA768O2.230138.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230138.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 21 14:11 DATA768O2.230155.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230155.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 21 16:26 DATA768O2.230179.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230179.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 22 08:04 DATA768O2.230229.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230229.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 23 09:17 DATA768O2.230326.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230326.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Feb 27 07:52 DATA768O2.230618.jyc -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.230618.jyc
lrwxrwxrwx 1 bwjenkins BW_System       54 Mar 29  2017 DATA768O2.6413096.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.6413096.bw
lrwxrwxrwx 1 bwjenkins BW_System       54 Mar 29  2017 DATA768O2.6413794.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.6413794.bw
lrwxrwxrwx 1 bwjenkins BW_System       54 Mar 30  2017 DATA768O2.6422331.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.6422331.bw
lrwxrwxrwx 1 bwjenkins BW_System       54 Mar 30  2017 DATA768O2.6422876.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.6422876.bw
lrwxrwxrwx 1 bwjenkins BW_System       54 Jan 22 16:12 DATA768O2.8095607.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA768O2.8095607.bw
-rwxr--r-- 1 bwjenkins BW_System      444 Mar 29  2017 flops-PPM2F-768O2
-rw-r--r-- 1 bwjenkins BW_System     2826 Mar 29  2017 FLOPS-PPM-JK-v02.py
-rwxr-xr-x 1 bwjenkins BW_System      541 Mar 29  2017 generate-MPICH_RANK_ORDER_V2
-rw-r--r-- 1 bwjenkins BW_System       13 Feb 27 08:16 GFLOPS_SEC_NODE.dat
-rw-r--r-- 1 bwjenkins BW_System      864 Mar 29  2017 iq768O2.h
-rw-r--r-- 1 bwjenkins BW_System      864 Feb 14 07:31 iq.h
-rwxr-xr-x 1 bwjenkins BW_System 11190291 Feb 14 07:31 PPM2F-768O2
-rw-r--r-- 1 bwjenkins BW_System  2281686 Mar 29  2017 PPM2F-tp3-5-1-12-ICF-short-loops.F
-rw-r--r-- 1 bwjenkins BW_System  4478516 Feb 14 07:31 PPM2F-tp3-5-1-12-ICF-short-loops.lst
-rw-r--r-- 1 bwjenkins BW_System   883936 Feb 14 07:31 PPM2F-tp3-5-1-12-ICF-short-loops.o
-rw-r--r-- 1 bwjenkins BW_System  6395252 Feb 14 07:31 PPM2F-tp3-5-1-12-ICF-short-loops.s
-rw------- 1 bwjenkins BW_System    12279 Feb 14 07:59 PPM4Fperf.ppm.229383.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 14 11:26 PPM4Fperf.ppm.229402.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 14 11:52 PPM4Fperf.ppm.229407.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 14 12:18 PPM4Fperf.ppm.229408.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 16 16:37 PPM4Fperf.ppm.229658.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 19 17:31 PPM4Fperf.ppm.229889.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 19 18:08 PPM4Fperf.ppm.229896.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 20 08:29 PPM4Fperf.ppm.229976.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 20 09:45 PPM4Fperf.ppm.229984.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 20 10:08 PPM4Fperf.ppm.229990.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 20 11:18 PPM4Fperf.ppm.229998.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 20 14:14 PPM4Fperf.ppm.230013.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 21 13:11 PPM4Fperf.ppm.230138.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 21 14:26 PPM4Fperf.ppm.230155.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 21 16:41 PPM4Fperf.ppm.230179.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 22 08:19 PPM4Fperf.ppm.230229.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 23 09:32 PPM4Fperf.ppm.230326.jyc
-rw------- 1 bwjenkins BW_System    12279 Feb 27 08:07 PPM4Fperf.ppm.230618.jyc
-rw------- 1 bwjenkins BW_System    12279 Mar 29  2017 PPM4Fperf.ppm.6413096.bw
-rw------- 1 bwjenkins BW_System        0 Mar 29  2017 PPM4Fperf.ppm.6413794.bw
-rw------- 1 bwjenkins BW_System    12279 Mar 30  2017 PPM4Fperf.ppm.6422331.bw
-rw------- 1 bwjenkins BW_System    12279 Mar 30  2017 PPM4Fperf.ppm.6422876.bw
-rw------- 1 bwjenkins BW_System    12279 Jan 22 16:28 PPM4Fperf.ppm.8095607.bw
-rw------- 1 bwjenkins BW_System     2116 Feb 14 07:59 PPM-768O2.o229383
-rw------- 1 bwjenkins BW_System     2116 Feb 14 11:26 PPM-768O2.o229402
-rw------- 1 bwjenkins BW_System     2116 Feb 14 11:52 PPM-768O2.o229407
-rw------- 1 bwjenkins BW_System     2116 Feb 14 12:18 PPM-768O2.o229408
-rw------- 1 bwjenkins BW_System     2116 Feb 16 16:37 PPM-768O2.o229658
-rw------- 1 bwjenkins BW_System     2116 Feb 19 17:31 PPM-768O2.o229889
-rw------- 1 bwjenkins BW_System     2116 Feb 19 18:08 PPM-768O2.o229896
-rw------- 1 bwjenkins BW_System     2116 Feb 20 08:30 PPM-768O2.o229976
-rw------- 1 bwjenkins BW_System     2116 Feb 20 09:45 PPM-768O2.o229984
-rw------- 1 bwjenkins BW_System     2116 Feb 20 10:08 PPM-768O2.o229990
-rw------- 1 bwjenkins BW_System     2116 Feb 20 11:18 PPM-768O2.o229998
-rw------- 1 bwjenkins BW_System     2116 Feb 20 14:14 PPM-768O2.o230013
-rw------- 1 bwjenkins BW_System     2118 Feb 21 13:11 PPM-768O2.o230138
-rw------- 1 bwjenkins BW_System     2118 Feb 21 14:26 PPM-768O2.o230155
-rw------- 1 bwjenkins BW_System     2118 Feb 21 16:41 PPM-768O2.o230179
-rw------- 1 bwjenkins BW_System     2118 Feb 22 08:19 PPM-768O2.o230229
-rw------- 1 bwjenkins BW_System     2118 Feb 23 09:33 PPM-768O2.o230326
-rw------- 1 bwjenkins BW_System     2118 Feb 27 08:07 PPM-768O2.o230618
-rw------- 1 bwjenkins BW_System     1308 Mar 29  2017 PPM-768O2.o6413096
-rw------- 1 bwjenkins BW_System     1308 Mar 29  2017 PPM-768O2.o6413794
-rw------- 1 bwjenkins BW_System     1308 Mar 30  2017 PPM-768O2.o6422331
-rw------- 1 bwjenkins BW_System     1308 Mar 30  2017 PPM-768O2.o6422876
-rw------- 1 bwjenkins BW_System     1314 Jan 22 16:28 PPM-768O2.o8095607
-rw-r--r-- 1 bwjenkins BW_System      836 Mar 29  2017 run-PPM2F-768O2
-rw-r--r-- 1 bwjenkins BW_System       66 Mar 29  2017 source_me_JK
-rw------- 1 bwjenkins BW_System    76719 Feb 14 07:59 stderrout.229383.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 14 11:26 stderrout.229402.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 14 11:52 stderrout.229407.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 14 12:18 stderrout.229408.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 16 16:37 stderrout.229658.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 19 17:31 stderrout.229889.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 19 18:08 stderrout.229896.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 20 08:30 stderrout.229976.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 20 09:45 stderrout.229984.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 20 10:08 stderrout.229990.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 20 11:18 stderrout.229998.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 20 14:14 stderrout.230013.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 21 13:11 stderrout.230138.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 21 14:26 stderrout.230155.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 21 16:41 stderrout.230179.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 22 08:19 stderrout.230229.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 23 09:32 stderrout.230326.jyc
-rw------- 1 bwjenkins BW_System    76719 Feb 27 08:07 stderrout.230618.jyc
-rw------- 1 bwjenkins BW_System    70980 Mar 29  2017 stderrout.6413096.bw
-rw------- 1 bwjenkins BW_System      300 Mar 29  2017 stderrout.6413794.bw
-rw------- 1 bwjenkins BW_System    70979 Mar 30  2017 stderrout.6422331.bw
-rw------- 1 bwjenkins BW_System    70979 Mar 30  2017 stderrout.6422876.bw
-rw------- 1 bwjenkins BW_System    70979 Jan 22 16:28 stderrout.8095607.bw
-rw-r--r-- 1 bwjenkins BW_System       12 Feb 27 08:16 TFLOPS_SEC-AGG.dat
-rwxr--r-- 1 bwjenkins BW_System      223 Mar 29  2017 wait_for.sh
ModuleCmd_Load.c(244):ERROR:105: Unable to locate a modulefile for 'PrgEnv/cray-18_06-cuda-9.1'
Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.38.1-1.0502.21728.74.1
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.19.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.19.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) craype-network-gemini
 14) craype/2.5.9
 15) moab/9.1.2.h2-sles11
 16) torque/6.1.2
 17) craype-interlagos
 18) cray-mpich/7.5.3
 19) java/jdk1.8.0_51
 20) globus/5.2.5
 21) gsissh/6.2p2
 22) xalt/0.7.6.local
 23) scripts
 24) OpenSSL/1.0.2m
 25) cURL/7.59.0
 26) git/2.17.0
 27) wget/1.19.4
 28) user-paths
 29) craype-hugepages2M
Error: A PrgEnv-* modulefile must be loaded.
Error: A PrgEnv-* modulefile must be loaded.
INFO: Job submitted to account: jnc
MYJOBID=242581.jyc
     1	#!/bin/bash
     2	echo "=== RUNNING $0 ==="
     3	
     4	while true
     5	do
     6	
     7		MYQSTAT=`qstat $1`
     8		if test "$MYQSTAT" = ""
     9	        then
    10			echo $1 finished
    11			exit
    12		else
    13			DATE=`date`
    14			echo "$DATE: waiting for $1 to finish"
    15	
    16		fi
    17	
    18		sleep 5m
    19	
    20	done
    21	
    22	
=== RUNNING ./wait_for.sh ===
Thu Jun 28 08:36:19 CDT 2018: waiting for 242581.jyc to finish
Thu Jun 28 08:41:19 CDT 2018: waiting for 242581.jyc to finish
qstat: Unknown Job Id Error 242581.nid00030
Traceback (most recent call last):
  File "FLOPS-PPM-JK-v02.py", line 59, in <module>
    AVG_FLOPCELL = sum(FLOPCELL)/float(len(FLOPCELL))
ZeroDivisionError: float division
242581.jyc finished
PPM4Fperf.ppm.242581.jyc
stderrout.242581.jyc
     Number of Compute Node =  18.0
     Number of Dumps =  0
     Ndump      Flop/s per Cell 
[SSH] exit-status: 1
Build step 'Execute shell script on remote host using ssh' marked build as failure
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/SPP-PPM-768O2-18XEs-jyc/TFLOPS_SEC-AGG.dat
Saving plot series data from: /var/lib/jenkins/workspace/SPP-PPM-768O2-18XEs-jyc/GFLOPS_SEC_NODE.dat
Sending e-mails to: [email protected]
Finished: FAILURE