Started by timer
Running as SYSTEM
Building in workspace /var/lib/jenkins/jobs/cray-hdf5-parallel-bw/workspace
[SSH] script:
module load cray-hdf5-parallel
~/bin/myenv.sh
mkdir hdf5-jenkins
cd hdf5-jenkins
rm -rf *
cp ~arnoldg/hdf5/ph5example.c .
cc -v -o ph5example ph5example.c
echo "#!/bin/bash" > hdf5.pbs
echo "#PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p" >> hdf5.pbs
echo "cd ~/hdf5-jenkins" >> hdf5.pbs
echo "aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out" >> hdf5.pbs
echo "aprun -n 1 hostname > stream-compute-node" >> hdf5.pbs
cat -n hdf5.pbs
MYJOBID=`qsub hdf5.pbs`
echo MYJOBID=$MYJOBID
~/bin/wait_for.sh $MYJOBID
# do some validation
module unload cray-hdf5-parallel
module load cray-hdf5
h5dump ParaEg0.h5
cat ph5example.out
echo "=== JOB RAN ON ==="
cat ~/hdf5-jenkins/stream-compute-node
rm -f ~/hdf5-jenkins/stream-compute-node
[SSH] executing...
mkdir: cannot create directory `hdf5-jenkins': File exists
rm /tmp/pe_18711/ph5example_1.s
/opt/cray/cce/8.7.7/cce/x86_64/bin/ccfe -hc -hcpu=interlagos -D __CRAYXE -D __CRAY_INTERLAGOS -D __CRAYXT_COMPUTE_LINUX_TARGET -hnetwork=gemini -nostdinc -isystem /opt/cray/cce/8.7.7/cce/x86_64/include/craylibs -isystem /opt/cray/cce/8.7.7/cce/x86_64/include/basic -isystem /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0/include -isystem /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0/include-fixed -isystem /opt/gcc/6.1.0/snos/include -isystem /usr/include -I /opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/include -I /opt/cray/libsci/18.12.1/CRAY/8.6/x86_64/include -I /opt/cray/hdf5-parallel/1.10.2.0/cray/8.6/include -I /opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/include -I /opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/include -I /opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/include -I /opt/cray/gni-headers/4.0-1.0502.10859.7.8.gem/include -I /opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/include -I /opt/cray/pmi/5.0.14/include -I /opt/cray/ugni/6.0-1.0502.10863.8.28.gem/include -I /opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/include -I /usr/local/include -I /opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/include -I /opt/cray/krca/1.0.0-2.0502.63139.4.30.gem/include -I /opt/cray-hss-devel/7.2.0/include -D__PEDRVR_GCC_BASE_ACTIVE__ -hpl=/tmp/pe_18711//pldir -rx8503 -ru87000 -CZ /tmp/pe_18711/ph5example.T -Cx -CX /tmp/pe_18711/ph5example.xml -hdecompile=/mnt/a/u/system/bwjenkins/hdf5-jenkins/ph5example. -S /tmp/pe_18711/ph5example_1.s -hipa3 -ufile_id=1 ph5example.c
/opt/cray/cce/8.7.7/cce/x86_64/bin/optcg /tmp/pe_18711//pldir 1
=== RUNNING /u/system/bwjenkins/bin/myenv.sh ===
HOST=h2ologin1
HOME=/u/system/bwjenkins
SCRATCH=/u/system/bwjenkins/scratch
ls SCRATCH:
mdtest
rmg-spp
rmg-spp-topo
setsm_benchmark
setsm_rsync
SPP-PPM
stripe8
sw_config
SWTools-BWCI
sw_workdir
tests
wrf
wrf-spp
my id:
uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd)
Currently Loaded Modulefiles:
1) modules/3.2.10.4
2) eswrap/1.3.3-1.020200.1280.0
3) cce/8.7.7
4) craype-network-gemini
5) craype/2.5.16
6) cray-libsci/18.12.1
7) udreg/2.3.2-1.0502.10518.2.17.gem
8) ugni/6.0-1.0502.10863.8.28.gem
9) pmi/5.0.14
10) dmapp/7.0.1-1.0502.11080.8.74.gem
11) gni-headers/4.0-1.0502.10859.7.8.gem
12) xpmem/0.1-2.0502.64982.5.3.gem
13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem
14) alps/5.2.4-2.0502.9774.31.12.gem
15) rca/1.0.0-2.0502.60530.1.63.gem
16) atp/2.0.4
17) PrgEnv-cray/5.2.82
18) cray-mpich/7.7.4
19) craype-interlagos
20) torque/6.1.2
21) moab/9.1.2-sles11
22) openssh/7.5p1
23) xalt/0.7.6.local
24) scripts
25) OpenSSL/1.0.2m
26) cURL/7.59.0
27) git/2.17.0
28) wget/1.19.4
29) user-paths
30) gnuplot/5.0.5
31) darshan/3.1.3
32) cray-hdf5-parallel/1.10.2.0
/opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/bin/as -o /tmp/pe_18711/ph5example_1.o --64 /tmp/pe_18711/ph5example_1.s
rm /tmp/pe_18711/ph5example_1.s
/opt/xalt/0.7.6/sles11.3/bin/ld /usr/lib64//crt1.o /usr/lib64//crti.o /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtbeginT.o /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtfastmath.o /opt/cray/cce/8.7.7/cce/x86_64/lib/qc_fastmath.o /opt/cray/cce/8.7.7/cce/x86_64/lib/no_mmap.o /tmp/pe_18711/ph5example_1.o -Bstatic -rpath=/opt/cray/cce/8.7.7/cce/x86_64/lib -L /opt/gcc/6.1.0/snos/lib64 -rpath=/opt/cray/gcc-libs -L /opt/cray/dmapp/default/lib64 -L /opt/cray/mpt/7.7.4/gni/mpich-cray/8.6/lib -L /opt/cray/libsci/18.12.1/CRAY/8.6/x86_64/lib -L /opt/cray/hdf5-parallel/1.10.2.0/cray/8.6/lib -L /sw/xe/darshan/3.1.3/darshan-3.1.3-longusername/lib -L /opt/cray/rca/1.0.0-2.0502.60530.1.63.gem/lib64 -L /opt/cray/alps/5.2.4-2.0502.9774.31.12.gem/lib64 -L /opt/cray/xpmem/0.1-2.0502.64982.5.3.gem/lib64 -L /opt/cray/dmapp/7.0.1-1.0502.11080.8.74.gem/lib64 -L /opt/cray/pmi/5.0.14/lib64 -L /opt/cray/ugni/6.0-1.0502.10863.8.28.gem/lib64 -L /opt/cray/udreg/2.3.2-1.0502.10518.2.17.gem/lib64 -L /opt/cray/atp/2.0.4/libApp -L /opt/cray/cce/8.7.7/cce/x86_64/lib/pkgconfig/../ -L /usr/local/lib -L /opt/cray/wlm_detect/1.0-1.0502.64649.2.2.gem/lib64 @/sw/xe/darshan/3.1.3/darshan-3.1.3-longusername/share/ld-opts/darshan-base-ld-opts -L /usr/lib64 -L /lib64 -rpath=/usr/lib64 -rpath=/lib64 -lfmpich -lmpichcxx --start-group -ldarshan -ldarshan-stubs --end-group -lz --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lpthread -lhdf5_hl_parallel -lrt -lz -ldl -lm -lpthread -lhdf5_parallel -lrt -lz -ldl -lm -lpthread -lsci_cray_mpi_mp -lm -lf -lsci_cray_mp -lmpich_cray -lrt -lugni -lpthread -lpmi -lsci_cray_mp -lcraymp -lm -lpthread -lf -lhugetlbfs -lpgas-dmapp -lfi -lu -lrt -ldmapp -lugni -ludreg -lpthread -lm -lcray-c++-rts -lstdc++ -lxpmem -ldmapp -lpthread -ludreg -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lugni -lpthread -lalpsutil -lpthread -lrca -lquadmath -lm -lomp -lrt -lcraymp -lpthread -lrt -ldl -lcray-c++-rts -lstdc++ -lm -lmodules -lm -lrt -lfi -lm -lquadmath -lrt -lcraymath -lm -lgfortran -lquadmath -lrt -lf -lm -lpthread -lrt -lu -lrt -ldl -lcray-c++-rts -lstdc++ -lm -lcsup -lrt --as-needed -latomic --no-as-needed -lstdc++ -lpthread --start-group -lc -lcsup -lgcc_eh -lm -lgcc --end-group -T/opt/cray/cce/8.7.7/cce/x86_64/lib/2.23.1.cce.ld -L /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0 -L /opt/cray/cce/8.7.7/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib -EL -o ph5example --undefined=__pthread_initialize_minimal /opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0//crtend.o /usr/lib64//crtn.o
rm /tmp/pe_18711/ph5example_1.o
/opt/cray/cce/8.7.7/binutils/x86_64/bin/objcopy --remove-section=.note.ftn_module_data ph5example
rm /tmp/pe_18711//pldir/ph5example_1.inl
rm /tmp/pe_18711//pldir/iline_1
rm /tmp/pe_18711//pldir/PL_global_data
rm /tmp/pe_18711//pldir/gline_1
rm /tmp/pe_18711//pldir/PL_module_list
rm /tmp/pe_18711//pldir/PL_path
rmdir /tmp/pe_18711//pldir
rm /tmp/pe_18711//ph5example.T
rm /tmp/pe_18711//ph5example.Tfe
rm /tmp/pe_18711//ph5example_1.cif.Ttmp
rm /tmp/pe_18711//ph5example.xml
rm /tmp/pe_18711//ph5example_1.xml.Ttmp
rmdir /tmp/pe_18711/
1 #!/bin/bash
2 #PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p
3 cd ~/hdf5-jenkins
4 aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out
5 aprun -n 1 hostname > stream-compute-node
INFO: Job submitted to account: jnc
MYJOBID=13063485.bw
=== RUNNING /u/system/bwjenkins/bin/wait_for.sh ===
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qstat: Unknown Job Id Error 13063485.bw
13063485.bw finished
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(21,10): 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120,
(21,20): 2121, 2122, 2123, 2124,
(22,0): 2201, 2202, 2203, 2204, 2205, 2206, 2207, 2208, 2209, 2210,
(22,10): 2211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2219, 2220,
(22,20): 2221, 2222, 2223, 2224,
(23,0): 2301, 2302, 2303, 2304, 2305, 2306, 2307, 2308, 2309, 2310,
(23,10): 2311, 2312, 2313, 2314, 2315, 2316, 2317, 2318, 2319, 2320,
(23,20): 2321, 2322, 2323, 2324
}
}
}
}
Parallel test files are:
./ParaEg0.h5
./ParaEg1.h5
--------------------------------
Proc 0: *** testing PHDF5 dataset using split communicators...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset using split communicators...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset independent write...
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset independent write...
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset collective write...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset collective write...
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset independent read...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset independent read...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset collective read...
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset collective read...
--------------------------------
===================================
PHDF5 tests finished with no errors
===================================
Application 108153055 resources: utime ~0s, stime ~1s, Rss ~9808, inblocks ~11305, outblocks ~29212
=== JOB RAN ON ===
nid03631
Application 108153063 resources: utime ~0s, stime ~1s, Rss ~9808, inblocks ~19, outblocks ~28
[SSH] completed
[SSH] exit-status: 0
[workspace] $ /bin/sh -xe /tmp/jenkins8642630691201706407.sh
+ scp 'BW_REMOTE:~/hdf5-jenkins/*' /var/lib/jenkins/jobs/cray-hdf5-parallel-bw/workspace
Finished: SUCCESS
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