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Started by user tbouvet Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/cray-hdf5-parallel-h2ologin4/workspace [SSH] script: module load cray-hdf5-parallel ~/bin/myenv.sh mkdir hdf5-jenkins cd hdf5-jenkins rm -rf * cp ~arnoldg/hdf5/ph5example.c . cc -v -o ph5example ph5example.c echo "#!/bin/bash" > hdf5.pbs echo "#PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p" >> hdf5.pbs echo "cd ~/hdf5-jenkins" >> hdf5.pbs echo "aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out" >> hdf5.pbs echo "aprun -n 1 hostname > stream-compute-node" >> hdf5.pbs cat -n hdf5.pbs MYJOBID=`qsub hdf5.pbs` echo MYJOBID=$MYJOBID ~/bin/wait_for.sh $MYJOBID # do some validation module unload cray-hdf5-parallel module load cray-hdf5 h5dump ParaEg0.h5 cat ph5example.out echo "=== JOB RAN ON ===" cat ~/hdf5-jenkins/stream-compute-node rm -f ~/hdf5-jenkins/stream-compute-node [SSH] executing... mkdir: cannot create directory `hdf5-jenkins': File exists cp: cannot stat `/u/staff/arnoldg/hdf5/ph5example.c': Permission denied CC-2151 craycc: ERROR in command line The source file "ph5example.c" is unavailable. CC-2107 craycc: ERROR in command line No valid filenames are specified on the command line. rm /tmp/pe_40592//pldir/PL_path rm /tmp/pe_40592//pldir/PL_module_list rm /tmp/pe_40592//pldir/PL_global_data rmdir /tmp/pe_40592//pldir rmdir /tmp/pe_40592/ === RUNNING /u/system/bwjenkins/bin/myenv.sh === HOST=h2ologin4 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest rmg-spp rmg-spp-topo setsm_benchmark setsm_rsync SPP-PPM stripe8 sw_config SWTools-BWCI sw_workdir tests wrf wrf-spp my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.4 2) eswrap/1.3.3-1.020200.1280.0 3) cce/8.7.7 4) craype-network-gemini 5) craype/2.5.16 6) cray-libsci/18.12.1 7) udreg/2.3.2-1.0502.10518.2.17.gem 8) ugni/6.0-1.0502.10863.8.28.gem 9) pmi/5.0.14 10) dmapp/7.0.1-1.0502.11080.8.74.gem 11) gni-headers/4.0-1.0502.10859.7.8.gem 12) xpmem/0.1-2.0502.64982.5.3.gem 13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem 14) alps/5.2.4-2.0502.9774.31.12.gem 15) rca/1.0.0-2.0502.60530.1.63.gem 16) atp/2.0.4 17) PrgEnv-cray/5.2.82 18) cray-mpich/7.7.4 19) craype-interlagos 20) torque/6.0.4 21) moab/9.1.2-sles11 22) java/jdk1.8.0_51 23) globus/6.0 24) gsissh/7.5p1b 25) xalt/0.7.6.local 26) scripts 27) OpenSSL/1.0.2m 28) cURL/7.59.0 29) git/2.17.0 30) wget/1.19.4 31) user-paths 32) gnuplot/5.0.5 33) darshan/3.1.3 34) cray-hdf5-parallel/1.10.2.0 1 #!/bin/bash 2 #PBS -lnodes=1:ppn=16:xe,walltime=00:05:00 -Nhdf5-p 3 cd ~/hdf5-jenkins 4 aprun -n 2 ~/hdf5-jenkins/ph5example -c > ph5example.out 5 aprun -n 1 hostname > stream-compute-node INFO: Job submitted to account: jnc MYJOBID=11072875.bw === RUNNING /u/system/bwjenkins/bin/wait_for.sh === Fri Feb 14 11:30:27 CST 2020: waiting for 11072875.bw to finish Fri Feb 14 11:35:27 CST 2020: waiting for 11072875.bw to finish qstat: Unknown Job Id Error 11072875.bw h5dump error: unable to open file "ParaEg0.h5" 11072875.bw finished === JOB RAN ON === nid01434 Application 87713096 resources: utime ~0s, stime ~1s, Rss ~22860, inblocks ~19, outblocks ~28 [SSH] completed [SSH] exit-status: 0 [workspace] $ /bin/sh -xe /tmp/jenkins1620362378021892752.sh + scp 'BW_REMOTE_4:~/hdf5-jenkins/*' /var/lib/jenkins/jobs/cray-hdf5-parallel-h2ologin4/workspace Finished: SUCCESS