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Started by timer Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace [SSH] script: module unload darshan module load darshan/3.1.6 module load autoconf module load automake module use /u/vendor/cray/dalton/modulefiles module unload PrgEnv-cray module load PrgEnv/cray-18_06-cuda-9.1 ~arnoldg/ior/myenv.sh rm -rf jenkins-ior/ mkdir jenkins-ior cd jenkins-ior git clone https://github.com/LLNL/IOR cd IOR ./bootstrap ./configure --host=x86_64 CC=cc make -j 4 file src/ior ls -l src/ior cp src/ior ~arnoldg/ior/src/ior #make clean; make cat -n ~arnoldg/ior/compare_stripe.pbs # there is a iorscript input file for ior in the same directory MYJOBID=`qsub ~arnoldg/ior/compare_stripeNL.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID echo "=== JOB RAN ON ===" cat ~/scratch/stripe8/ior-compute-nodes if [ -f ~/scratch/stripe8/ior-compute-nodes ] then : # it's all good else echo "ior-compute-nodes not found, pbs job likely hit walltime" exit 1 fi rm -f ~/scratch/stripe8/ior-compute-nodes [SSH] executing... Cloning into 'IOR'... === RUNNING /u/staff/arnoldg/ior/myenv.sh === HOST=jyc1 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest setsm_benchmark SPP-PPM stripe8 sw_config sw_workdir test.log tests my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.5 2) nodestat/2.2-1.0502.60539.1.31.gem 3) sdb/1.1-1.0502.63652.4.27.gem 4) alps/5.2.4-2.0502.9774.31.12.gem 5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.45.1-1.0502.21728.75.4 6) udreg/2.3.2-1.0502.10518.2.17.gem 7) ugni/6.0-1.0502.10863.8.28.gem 8) gni-headers/4.0-1.0502.10859.9.27.gem 9) dmapp/7.0.1-1.0502.11080.8.74.gem 10) xpmem/0.1-2.0502.64982.7.27.gem 11) hss-llm/7.2.0 12) Base-opts/1.0.2-1.0502.60680.2.4.gem 13) craype-network-gemini 14) craype-interlagos 15) craype/2.5.15 16) moab/9.1.2.h6-sles11 17) torque/6.1.2 18) openssh/7.5p1 19) xalt/0.7.6.local 20) scripts 21) OpenSSL/1.0.2m 22) cURL/7.59.0 23) git/2.17.0 24) wget/1.19.4 25) user-paths 26) gnuplot/5.0.5 27) darshan/3.1.6 28) autoconf/2.69 29) automake/1.14 30) cce/8.7.1 31) cray-mpich/7.7.1 32) cray-libsci/18.04.1 33) pmi/5.0.14 34) rca/1.0.0-2.0502.60530.1.63.gem 35) atp/2.1.2 36) PrgEnv/cray-18_06-cuda-9.1 + aclocal -I config + autoheader + automake --add-missing --copy --force-missing --foreign configure.ac:14: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:14: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:18: installing 'config/compile' configure.ac:11: installing 'config/config.guess' configure.ac:11: installing 'config/config.sub' configure.ac:14: installing 'config/install-sh' configure.ac:14: installing 'config/missing' contrib/Makefile.am: installing 'config/depcomp' + autoconf --force + rm -fr autom4te.cache + exit 0 checking metadata... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-pc-none checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-strip... no checking for strip... strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for x86_64-mpicc... cc checking for x86_64-gcc... (cached) cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... none checking for function MPI_Init... yes checking for mpi.h... yes checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking gpfs.h usability... no checking gpfs.h presence... no checking for gpfs.h... no checking gpfs_fcntl.h usability... no checking gpfs_fcntl.h presence... no checking for gpfs_fcntl.h... no checking for size_t... yes checking for getpagesize... yes checking for gettimeofday... yes checking for memset... yes checking for mkdir... yes checking for pow... yes checking for putenv... yes checking for realpath... yes checking for regcomp... yes checking for sqrt... yes checking for strcasecmp... yes checking for strchr... yes checking for strerror... yes checking for strncasecmp... yes checking for strstr... yes checking for uname... yes checking for library containing sqrt... none required checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking lustre/lustre_user.h usability... no checking lustre/lustre_user.h presence... no checking for lustre/lustre_user.h... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating contrib/Makefile config.status: creating doc/Makefile config.status: creating src/config.h config.status: executing depfiles commands Making all in src make[1]: Entering directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/src' make all-am make[2]: Entering directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/src' source='ior.c' object='ior.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -g -O2 -c -o ior.o ior.c source='utilities.c' object='utilities.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -g -O2 -c -o utilities.o utilities.c source='parse_options.c' object='parse_options.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -g -O2 -c -o parse_options.o parse_options.c source='aiori-POSIX.c' object='aiori-POSIX.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -g -O2 -c -o aiori-POSIX.o aiori-POSIX.c CC-513 craycc: WARNING File = aiori-MPIIO.c, Line = 236 A value of type "int (*)(MPI_File, const void *, int, MPI_Datatype, MPI_Status *)" cannot be assigned to an entity of type "int (*)(MPI_File, void *, int, MPI_Datatype, MPI_Status *)". Access = MPI_File_write; ^ CC-513 craycc: WARNING File = aiori-MPIIO.c, Line = 237 A value of type "int (*)(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *)" cannot be assigned to an entity of type "int (*)(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *)". Access_at = MPI_File_write_at; ^ CC-513 craycc: WARNING File = aiori-MPIIO.c, Line = 238 A value of type "int (*)(MPI_File, const void *, int, MPI_Datatype, MPI_Status *)" cannot be assigned to an entity of type "int (*)(MPI_File, void *, int, MPI_Datatype, MPI_Status *)". Access_all = MPI_File_write_all; ^ CC-513 craycc: WARNING File = aiori-MPIIO.c, Line = 239 A value of type "int (*)(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *)" cannot be assigned to an entity of type "int (*)(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *)". Access_at_all = MPI_File_write_at_all; ^ Cray C : Version 8.7.1 (20180521181432_62eaa2ad078eb759426afd1bc5a8133cd767d87b) Total warnings detected in aiori-MPIIO.c: 4 source='aiori-MPIIO.c' object='aiori-MPIIO.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -g -O2 -c -o aiori-MPIIO.o aiori-MPIIO.c cc -g -O2 -o ior ior.o utilities.o parse_options.o aiori-POSIX.o aiori-MPIIO.o CC-223 craycc: WARNING File = cbif.c, Line = 73 The function "open64" is declared implicitly. fd = open64(fileName, O_RDWR); ^ CC-223 craycc: WARNING File = cbif.c, Line = 77 The function "lseek64" is declared implicitly. if (lseek64(fd, alignedOffset, SEEK_SET) == -1) ^ CC-223 craycc: WARNING File = cbif.c, Line = 91 The function "lseek64" is declared implicitly. if (lseek64(fd, alignedOffset, SEEK_SET) == -1) ^ Cray C : Version 8.7.1 (20180521181432_62eaa2ad078eb759426afd1bc5a8133cd767d87b) Total warnings detected in cbif.c: 3 make[2]: Leaving directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/src' make[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/src' Making all in doc make[1]: Entering directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/doc' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/doc' Making all in contrib make[1]: Entering directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/contrib' source='cbif.c' object='cbif.o' libtool=no \ DEPDIR=.deps depmode=none /bin/sh ../config/depcomp \ cc -DHAVE_CONFIG_H -I. -I../src -g -O2 -c -o cbif.o cbif.c cc -g -O2 -o cbif cbif.o INFO: Job submitted to account: jnc make[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR/contrib' make[1]: Entering directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR' make[1]: Nothing to be done for `all-am'. make[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/jenkins-ior/IOR' src/ior: ELF 64-bit LSB executable, x86-64, version 1 (GNU/Linux), for GNU/Linux 2.6.4, statically linked, not stripped -rwx------ 1 bwjenkins BW_System 9201376 Nov 26 18:31 src/ior 1 #!/bin/bash 2 #PBS -lnodes=16:ppn=7:xe,walltime=00:10:00 3 #PBS -NIORtest 4 5 cd $HOME/scratch 6 7 NP=112 8 9 cd $HOME/scratch 10 mkdir -p stripe8 11 lfs setstripe -c 8 stripe8 12 cd stripe8 13 lfs getstripe . 14 time aprun -n $NP $HOME/ior/operf.sh "$HOME/ior/src/ior -f $HOME/ior/iorscript" | tee ior.txt 15 MYWRITENUMBER=`grep 'Max Write' ior.txt | cut -d '(' -f2 | cut -d' ' -f1` 16 MYREADNUMBER=`grep 'Max Read' ior.txt | cut -d '(' -f2 | cut -d' ' -f1` 17 18 echo "YVALUE=$MYWRITENUMBER 19 " > myiornumber.dat 20 21 echo "YVALUE=$MYREADNUMBER 22 " > myiorREADnumber.dat 23 24 aprun -n 16 -N 1 hostname > ior-compute-nodes 25 MYJOBID=596935.jyc === RUNNING /u/staff/arnoldg/ior/wait_for.sh === Fri Nov 26 18:31:49 CST 2021: waiting for 596935.jyc to finish Fri Nov 26 18:36:49 CST 2021: waiting for 596935.jyc to finish Fri Nov 26 18:41:49 CST 2021: waiting for 596935.jyc to finish qstat: Unknown Job Id Error 596935.nid00030 596935.jyc finished === JOB RAN ON === nid00063 nid00059 nid00054 nid00057 nid00049 nid00048 nid00052 nid00051 nid00061 nid00053 nid00050 nid00055 nid00058 nid00062 nid00060 nid00056 Application 1104227 resources: utime ~0s, stime ~19s, Rss ~22032, inblocks ~304, outblocks ~448 [SSH] completed [SSH] exit-status: 0 [workspace] $ /bin/sh -xe /tmp/jenkins3097376240340342309.sh + scp JYC_REMOTE:scratch/stripe8/ior.txt /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace + scp JYC_REMOTE:scratch/stripe8/myiornumber.dat /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace + scp JYC_REMOTE:scratch/stripe8/myiorREADnumber.dat /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace Recording plot data Saving plot series data from: /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace/myiornumber.dat Saving plot series data from: /var/lib/jenkins/jobs/gbauer-ior-jyc/workspace/myiorREADnumber.dat Finished: SUCCESS