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Started by timer Running as SYSTEM Building in workspace /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace [SSH] script: module unload craype module load craype/2.5.8 module unload cray-mpich module load cray-mpich/7.5.0 module load autoconf module load automake module unload darshan module load darshan/3.1.3 ~/bin/myenv.sh rm -rf jenkins-ior/ mkdir jenkins-ior cd jenkins-ior git clone https://github.com/LLNL/IOR cd IOR ./bootstrap ./configure --host=x86_64 CC=cc make -j 4 file src/ior ls -l src/ior cp src/ior ~arnoldg/ior/src/ior #make clean; make cat -n ~arnoldg/ior/compare_stripeNL.pbs # there is a iorscript input file for ior in the same directory MYJOBID=`qsub ~arnoldg/ior/compare_stripeNL.pbs` echo MYJOBID=$MYJOBID ~/bin/wait_for.sh $MYJOBID echo "=== JOB RAN ON ===" cat ~/scratch/stripe8/ior-compute-nodes if [ -f ~/scratch/stripe8/ior-compute-nodes ] then : # it's all good else echo "ior-compute-nodes not found, pbs job likely hit walltime" exit 1 fi rm -f ~/scratch/stripe8/ior-compute-nodes [SSH] executing... === RUNNING /u/system/bwjenkins/bin/myenv.sh === HOST=h2ologin2 HOME=/u/system/bwjenkins SCRATCH=/u/system/bwjenkins/scratch ls SCRATCH: mdtest rmg-spp rmg-spp-topo setsm_benchmark setsm_rsync SPP-PPM stripe8 sw_config SWTools-BWCI sw_workdir tests wrf wrf-spp my id: uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd) Currently Loaded Modulefiles: 1) modules/3.2.10.4 2) eswrap/1.3.3-1.020200.1280.0 3) cce/8.7.7 4) cray-libsci/18.12.1 5) udreg/2.3.2-1.0502.10518.2.17.gem 6) ugni/6.0-1.0502.10863.8.28.gem 7) pmi/5.0.14 8) dmapp/7.0.1-1.0502.11080.8.74.gem 9) gni-headers/4.0-1.0502.10859.7.8.gem 10) xpmem/0.1-2.0502.64982.5.3.gem 11) dvs/2.5_0.9.0-1.0502.2188.1.113.gem 12) alps/5.2.4-2.0502.9774.31.12.gem 13) rca/1.0.0-2.0502.60530.1.63.gem 14) atp/2.0.4 15) PrgEnv-cray/5.2.82 16) torque/6.0.4 17) moab/9.1.2-sles11 18) openssh/7.5p1 19) xalt/0.7.6.local 20) scripts 21) OpenSSL/1.0.2m 22) cURL/7.59.0 23) git/2.17.0 24) wget/1.19.4 25) user-paths 26) craype-network-gemini 27) craype-interlagos 28) craype/2.5.8 29) cray-mpich/7.5.0 30) autoconf/2.69 31) automake/1.14 32) gnuplot/5.0.5 33) darshan/3.1.3 Cloning into 'IOR'... + aclocal -I config + autoheader + automake --add-missing --copy --force-missing --foreign configure.ac:14: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:14: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:18: installing 'config/compile' configure.ac:11: installing 'config/config.guess' configure.ac:11: installing 'config/config.sub' configure.ac:14: installing 'config/install-sh' configure.ac:14: installing 'config/missing' contrib/Makefile.am: installing 'config/depcomp' + autoconf --force + rm -fr autom4te.cache + exit 0 checking metadata... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-pc-none checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-strip... no checking for strip... strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for x86_64-mpicc... cc checking for x86_64-gcc... (cached) cc configure: error: in `/mnt/a/u/system/bwjenkins/jenkins-ior/IOR': configure: error: C compiler cannot create executables See `config.log' for more details make: *** No targets specified and no makefile found. Stop. ls: cannot access src/ior: No such file or directory cp: cannot stat `src/ior': No such file or directory checking whether the C compiler works... no src/ior: ERROR: cannot open `src/ior' (No such file or directory) 1 #!/bin/bash 2 #PBS -lnodes=16:ppn=7:xe,walltime=00:10:00 3 #PBS -NIORtest 4 5 module unload darshan 6 module load darshan/3.1.3 7 cd $HOME/scratch 8 9 NP=112 10 11 cd $HOME/scratch 12 mkdir -p stripe8 13 lfs setstripe -c 8 stripe8 14 cd stripe8 15 lfs getstripe stripe8 16 time aprun -n $NP ~arnoldg/ior/src/ior -f ~arnoldg/ior/iorscript | tee ior.txt 17 MYWRITENUMBER=`grep 'Max Write' ior.txt | cut -d '(' -f2 | cut -d' ' -f1` 18 MYREADNUMBER=`grep 'Max Read' ior.txt | cut -d '(' -f2 | cut -d' ' -f1` 19 20 echo "YVALUE=$MYWRITENUMBER 21 " > myiornumber.dat 22 23 echo "YVALUE=$MYREADNUMBER 24 " > myiorREADnumber.dat 25 26 aprun -n 16 -N 1 hostname > ior-compute-nodes 27 INFO: Job submitted to account: jnc MYJOBID=12512282.bw === RUNNING /u/system/bwjenkins/bin/wait_for.sh === Tue Aug 10 04:45:16 CDT 2021: waiting for 12512282.bw to finish Tue Aug 10 04:50:16 CDT 2021: waiting for 12512282.bw to finish Tue Aug 10 04:55:16 CDT 2021: waiting for 12512282.bw to finish Tue Aug 10 05:00:16 CDT 2021: waiting for 12512282.bw to finish Tue Aug 10 05:05:16 CDT 2021: waiting for 12512282.bw to finish Tue Aug 10 05:10:16 CDT 2021: waiting for 12512282.bw to finish qstat: Unknown Job Id Error 12512282.bw 12512282.bw finished === JOB RAN ON === nid24078 nid21456 nid21457 nid20341 nid20014 nid01646 nid15528 nid20340 nid20015 nid20343 nid21130 nid21204 nid23448 nid21131 nid20283 nid20282 Application 102654674 resources: utime ~0s, stime ~35s, Rss ~22676, inblocks ~304, outblocks ~448 [SSH] completed [SSH] exit-status: 0 [workspace] $ /bin/sh -xe /tmp/jenkins8032474264936415780.sh + scp BW_REMOTE_2:scratch/stripe8/ior.txt /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace + scp BW_REMOTE_2:scratch/stripe8/myiornumber.dat /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace + scp BW_REMOTE_2:scratch/stripe8/myiorREADnumber.dat /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace Recording plot data Saving plot series data from: /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace/myiornumber.dat Saving plot series data from: /var/lib/jenkins/jobs/ior-h2ologin2-darshan/workspace/myiorREADnumber.dat Finished: SUCCESS