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Started by user arnoldg Building on master in workspace /var/lib/jenkins/workspace/qmcpack-jyc executing script: module list rm -rf qmcpack-spp tar xzf ~arnoldg/qmcpack_spp_20180222_jyc.tgz cd qmcpack-spp/qmcpack-3.2.0/build module unload PrgEnv-cray module use /u/vendor/cray/dalton/modulefiles rm -rf /tmp/* ./build_script_cpu_complex cd ../../runs/cpu_4 MYJOBID=`qsub bw.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID MYREAL=`grep real qmcpack.err | cut -d' ' -f2` echo MYREAL=$MYREAL echo YVALUE=$MYREAL > ~/qmcpack-spp/realtime.txt ./energy.pl gr4x4x1.p400x8.s001.scalar.dat 0 | grep LocalEnergy | awk '{print $3}' Currently Loaded Modulefiles: 1) modules/3.2.10.5 2) nodestat/2.2-1.0502.60539.1.31.gem 3) sdb/1.1-1.0502.63652.4.27.gem 4) alps/5.2.4-2.0502.9774.31.12.gem 5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.38.1-1.0502.21728.74.1 6) udreg/2.3.2-1.0502.10518.2.17.gem 7) ugni/6.0-1.0502.10863.8.28.gem 8) gni-headers/4.0-1.0502.10859.9.19.gem 9) dmapp/7.0.1-1.0502.11080.8.74.gem 10) xpmem/0.1-2.0502.64982.7.19.gem 11) hss-llm/7.2.0 12) Base-opts/1.0.2-1.0502.60680.2.4.gem 13) cce/8.5.8 14) craype-network-gemini 15) craype/2.5.9 16) cray-libsci/16.11.1 17) pmi/5.0.11 18) rca/1.0.0-2.0502.60530.1.63.gem 19) atp/2.1.0 20) PrgEnv-cray/5.2.82 21) moab/9.1.2.h2-sles11 22) torque/6.0.4 23) craype-interlagos 24) cray-mpich/7.5.3 25) java/jdk1.8.0_51 26) globus/5.2.5 27) gsissh/6.2p2 28) xalt/0.7.6.local 29) scripts 30) OpenSSL/1.0.2m 31) cURL/7.59.0 32) git/2.17.0 33) wget/1.19.4 34) user-paths 35) gnuplot/5.0.5 36) darshan/3.1.3 rm: cannot remove `/tmp/allinea-arnoldg': Operation not permitted rm: cannot remove `/tmp/arnoldg': Operation not permitted rm: cannot remove `/tmp/bwjenkins_2018_10_04_09_06_11_b854f293-705d-4149-8627-2464fc241745': Directory not empty rm: cannot remove `/tmp/hsperfdata_arnoldg': Operation not permitted rm: cannot remove `/tmp/intelremotemonagent.25114.log': Operation not permitted rm: cannot remove 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not permitted rm: cannot remove `/tmp/pgcudar0bhZi6zEAEA.cubin': Operation not permitted rm: cannot remove `/tmp/qsub.brDVvf': Operation not permitted rm: cannot remove `/tmp/qsub.CA3A2L': Operation not permitted rm: cannot remove `/tmp/qsub.FRzJPd': Operation not permitted rm: cannot remove `/tmp/qsub.KyR0Jt': Operation not permitted rm: cannot remove `/tmp/rur': Permission denied rm: cannot remove `/tmp/stunnel.log': Operation not permitted rm: cannot remove `/tmp/test_main_1.cif.Ttmp': Operation not permitted rm: cannot remove `/tmp/test_main_1.xml.Ttmp': Operation not permitted rm: cannot remove `/tmp/trqauthd-unix': Operation not permitted rm: cannot remove `/tmp/x509up_p25736.fileOcHdWS.1': Operation not permitted ModuleCmd_Load.c(244):ERROR:105: Unable to locate a modulefile for 'PrgEnv/gnu-7.3.0-cuda-9.1' Currently Loaded Modulefiles: 1) modules/3.2.10.5 2) nodestat/2.2-1.0502.60539.1.31.gem 3) sdb/1.1-1.0502.63652.4.27.gem 4) alps/5.2.4-2.0502.9774.31.12.gem 5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.38.1-1.0502.21728.74.1 6) udreg/2.3.2-1.0502.10518.2.17.gem 7) ugni/6.0-1.0502.10863.8.28.gem 8) gni-headers/4.0-1.0502.10859.9.19.gem 9) dmapp/7.0.1-1.0502.11080.8.74.gem 10) xpmem/0.1-2.0502.64982.7.19.gem 11) hss-llm/7.2.0 12) Base-opts/1.0.2-1.0502.60680.2.4.gem 13) craype-network-gemini 14) craype/2.5.9 15) moab/9.1.2.h2-sles11 16) torque/6.0.4 17) craype-interlagos 18) cray-mpich/7.5.3 19) java/jdk1.8.0_51 20) globus/5.2.5 21) gsissh/6.2p2 22) xalt/0.7.6.local 23) scripts 24) OpenSSL/1.0.2m 25) cURL/7.59.0 26) git/2.17.0 27) wget/1.19.4 28) user-paths 29) gnuplot/5.0.5 30) darshan/3.1.3 31) cray-hdf5/1.10.0.1 32) fftw/3.3.4.11 33) boost/1.53.0 34) cmake/3.1.3 35) craype-hugepages2M -- The C compiler identification is unknown CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message): The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a simple test program. It fails with the following output: Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTryCompileExec447322785/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec447322785.dir/build.make CMakeFiles/cmTryCompileExec447322785.dir/build gmake[1]: Entering directory `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp' /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E cmake_progress_report /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec447322785.dir/testCCompiler.c.o /opt/cray/craype/default/bin/cc -I/u/staff/rmokos/libs/amdlibm/include -o CMakeFiles/cmTryCompileExec447322785.dir/testCCompiler.c.o -c /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c Error: A PrgEnv-* modulefile must be loaded. gmake[1]: *** [CMakeFiles/cmTryCompileExec447322785.dir/testCCompiler.c.o] Error 255 gmake[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp' gmake: *** [cmTryCompileExec447322785/fast] Error 2 CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:1 (PROJECT) -- The CXX compiler identification is unknown -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken -- Configuring incomplete, errors occurred! See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log". See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log". CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message): The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a simple test program. It fails with the following output: Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTryCompileExec3685350414/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec3685350414.dir/build.make CMakeFiles/cmTryCompileExec3685350414.dir/build gmake[1]: Entering directory `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp' /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E cmake_progress_report /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec3685350414.dir/testCCompiler.c.o /opt/cray/craype/default/bin/cc -march=bdver1 -msse -msse2 -msse3 -msse4.1 -D_CRAYMPI -fopenmp -O3 -Drestrict=__restrict__ -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -Wno-deprecated -ffast-math -funroll-loops -fomit-frame-pointer -malign-double -DDISABLE_TIMER=1 -DHAVE_FMA4=1 -DHAVE_AMDLIBM=1 -DENABLE_SOA=1 -DQMC_MIXED_PRECISION=1 -D__forceinline="__attribute__((always_inline))" -std=c99 -I/u/staff/rmokos/libs/amdlibm/include -o CMakeFiles/cmTryCompileExec3685350414.dir/testCCompiler.c.o -c /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c Error: A PrgEnv-* modulefile must be loaded. gmake[1]: Leaving directory `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp' gmake[1]: *** [CMakeFiles/cmTryCompileExec3685350414.dir/testCCompiler.c.o] Error 255 gmake: *** [cmTryCompileExec3685350414/fast] Error 2 CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:1 (PROJECT) make: *** No targets specified and no makefile found. Stop. ./build_script_cpu_complex: line 39: cd: bin: No such file or directory mv: cannot stat `qmcpack': No such file or directory -- The C compiler identification is unknown -- The CXX compiler identification is unknown -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken -- Configuring incomplete, errors occurred! See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log". See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log". INFO: Job submitted to account: jnc MYJOBID=250260.jyc === RUNNING /u/staff/arnoldg/ior/wait_for.sh === Thu Oct 4 09:06:17 CDT 2018: waiting for 250260.jyc to finish Thu Oct 4 09:11:17 CDT 2018: waiting for 250260.jyc to finish qstat: Unknown Job Id Error 250260.nid00030 Cannot open file gr4x4x1.p400x8.s001.scalar.dat 250260.jyc finished MYREAL=0.97 [SSH] exit-status: 0 [qmcpack-jyc] $ /bin/sh -xe /tmp/jenkins3056123772156789942.sh + rm -rf /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt + scp 'JYC_REMOTE:~/qmcpack-spp/*.txt' /var/lib/jenkins/workspace/qmcpack-jyc NCSA JYC System Access status: User Access UnRestricted. Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt Finished: SUCCESS