Skip to content
[Jenkins]Jenkins
Success

Console Output

Download View as plain text
Started by user arnoldg
Building on master in workspace /var/lib/jenkins/workspace/qmcpack-jyc
executing script:


module list
rm -rf qmcpack-spp
tar xzf ~arnoldg/qmcpack_spp_20180222_jyc.tgz
cd qmcpack-spp/qmcpack-3.2.0/build
module unload PrgEnv-cray
module use /u/vendor/cray/dalton/modulefiles
rm -rf /tmp/*
./build_script_cpu_complex
cd ../../runs/cpu_4

MYJOBID=`qsub bw.pbs`
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID

MYREAL=`grep real qmcpack.err | cut -d' ' -f2`
echo MYREAL=$MYREAL
echo YVALUE=$MYREAL > ~/qmcpack-spp/realtime.txt
./energy.pl gr4x4x1.p400x8.s001.scalar.dat 0 | grep LocalEnergy | awk '{print $3}'
Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.43.1-1.0502.21728.74.6
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.24.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.24.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) cce/8.5.8
 14) craype-network-gemini
 15) craype/2.5.9
 16) cray-libsci/16.11.1
 17) pmi/5.0.11
 18) rca/1.0.0-2.0502.60530.1.63.gem
 19) atp/2.1.0
 20) PrgEnv-cray/5.2.82
 21) moab/9.1.2.h2-sles11
 22) torque/6.0.4
 23) craype-interlagos
 24) cray-mpich/7.5.3
 25) java/jdk1.8.0_51
 26) globus/5.2.5
 27) gsissh/6.2p2
 28) xalt/0.7.6.local
 29) scripts
 30) OpenSSL/1.0.2m
 31) cURL/7.59.0
 32) git/2.17.0
 33) wget/1.19.4
 34) user-paths
 35) gnuplot/5.0.5
 36) darshan/3.1.3
rm: cannot remove `/tmp/stunnel.log': Operation not permitted
rm: cannot remove `/tmp/trqauthd-unix': Operation not permitted
ModuleCmd_Load.c(244):ERROR:105: Unable to locate a modulefile for 'PrgEnv/gnu-7.3.0-cuda-9.1'
Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.43.1-1.0502.21728.74.6
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.24.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.24.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) craype-network-gemini
 14) craype/2.5.9
 15) moab/9.1.2.h2-sles11
 16) torque/6.0.4
 17) craype-interlagos
 18) cray-mpich/7.5.3
 19) java/jdk1.8.0_51
 20) globus/5.2.5
 21) gsissh/6.2p2
 22) xalt/0.7.6.local
 23) scripts
 24) OpenSSL/1.0.2m
 25) cURL/7.59.0
 26) git/2.17.0
 27) wget/1.19.4
 28) user-paths
 29) gnuplot/5.0.5
 30) darshan/3.1.3
 31) cray-hdf5/1.10.0.1
 32) fftw/3.3.4.11
 33) boost/1.53.0
 34) cmake/3.1.3
 35) craype-hugepages2M
CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec1756033043/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec1756033043.dir/build.make
  CMakeFiles/cmTryCompileExec1756033043.dir/build

  gmake[1]: Entering directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec1756033043.dir/testCCompiler.c.o

  /opt/cray/craype/default/bin/cc -I/u/staff/rmokos/libs/amdlibm/include -o
  CMakeFiles/cmTryCompileExec1756033043.dir/testCCompiler.c.o -c
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c


  Error: A PrgEnv-* modulefile must be loaded.

  gmake[1]: *** [CMakeFiles/cmTryCompileExec1756033043.dir/testCCompiler.c.o]
  Error 255

  gmake[1]: Leaving directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec1756033043/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:1 (PROJECT)


-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /opt/cray/craype/default/bin/cc
-- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log".
CMake Error at /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/default/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec3189898239/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec3189898239.dir/build.make
  CMakeFiles/cmTryCompileExec3189898239.dir/build

  gmake[1]: Entering directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  /mnt/abc/sw/xe6_cle5.2_pe2015-09/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec3189898239.dir/testCCompiler.c.o

  /opt/cray/craype/default/bin/cc -march=bdver1 -msse -msse2 -msse3 -msse4.1
  -D_CRAYMPI -fopenmp -O3 -Drestrict=__restrict__ -finline-limit=1000
  -fstrict-aliasing -funroll-all-loops -Wno-deprecated -ffast-math
  -funroll-loops -fomit-frame-pointer -malign-double -DDISABLE_TIMER=1
  -DHAVE_FMA4=1 -DHAVE_AMDLIBM=1 -DENABLE_SOA=1 -DQMC_MIXED_PRECISION=1
  -D__forceinline="__attribute__((always_inline))" -std=c99
  -I/u/staff/rmokos/libs/amdlibm/include -o
  CMakeFiles/cmTryCompileExec3189898239.dir/testCCompiler.c.o -c
  /mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp/testCCompiler.c


  Error: A PrgEnv-* modulefile must be loaded.

  gmake[1]: *** [CMakeFiles/cmTryCompileExec3189898239.dir/testCCompiler.c.o]
  Error 255

  gmake[1]: Leaving directory
  `/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec3189898239/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:1 (PROJECT)


make: *** No targets specified and no makefile found.  Stop.
./build_script_cpu_complex: line 39: cd: bin: No such file or directory
mv: cannot stat `qmcpack': No such file or directory
-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /opt/cray/craype/default/bin/cc
-- Check for working C compiler: /opt/cray/craype/default/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/abc/u/system/bwjenkins/qmcpack-spp/qmcpack-3.2.0/build/CMakeFiles/CMakeError.log".
INFO: Job submitted to account: jnc
MYJOBID=251154.jyc
=== RUNNING /u/staff/arnoldg/ior/wait_for.sh ===
Thu Oct 11 08:38:24 CDT 2018: waiting for 251154.jyc to finish
Thu Oct 11 08:43:24 CDT 2018: waiting for 251154.jyc to finish
qstat: Unknown Job Id Error 251154.nid00030
Cannot open file gr4x4x1.p400x8.s001.scalar.dat
251154.jyc finished
MYREAL=0.93
[SSH] exit-status: 0
[qmcpack-jyc] $ /bin/sh -xe /tmp/jenkins3763716820120070259.sh
+ rm -rf /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt
+ scp 'JYC_REMOTE:~/qmcpack-spp/*.txt' /var/lib/jenkins/workspace/qmcpack-jyc
NCSA JYC System 
Access status: User Access UnRestricted.

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM

Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/qmcpack-jyc/realtime.txt
Finished: SUCCESS