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openbabel-2.3.2/data/aromatic.h
openbabel-2.3.2/data/aromatic.txt
openbabel-2.3.2/data/atomtyp.h
openbabel-2.3.2/data/atomtyp.txt
openbabel-2.3.2/data/babel_povray3.inc
openbabel-2.3.2/data/bin2hex.pl
openbabel-2.3.2/data/bondtyp.h
openbabel-2.3.2/data/bondtyp.txt
openbabel-2.3.2/data/CMakeLists.txt
openbabel-2.3.2/data/element.h
openbabel-2.3.2/data/element.txt
openbabel-2.3.2/data/fragments.txt
openbabel-2.3.2/data/gaff.dat
openbabel-2.3.2/data/gaff.prm
cd openbabel-2.3.2/
mkdir build
cd build/
cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/openbabel-2.3.2/install ..
openbabel-2.3.2/data/genheaders.sh
openbabel-2.3.2/data/ghemical.prm
openbabel-2.3.2/data/isotope-small.txt
openbabel-2.3.2/data/isotope.h
openbabel-2.3.2/data/isotope.txt
openbabel-2.3.2/data/logp.txt
openbabel-2.3.2/data/MACCS.txt
openbabel-2.3.2/data/mm2.prm
openbabel-2.3.2/data/mmff94.ff
openbabel-2.3.2/data/mmff94s.ff
openbabel-2.3.2/data/mmffang.par
openbabel-2.3.2/data/mmffbndk.par
openbabel-2.3.2/data/mmffbond.par
openbabel-2.3.2/data/mmffchg.par
openbabel-2.3.2/data/mmffdef.par
openbabel-2.3.2/data/mmffdfsb.par
openbabel-2.3.2/data/mmffoop.par
openbabel-2.3.2/data/mmffpbci.par
openbabel-2.3.2/data/mmffprop.par
openbabel-2.3.2/data/mmffs_oop.par
openbabel-2.3.2/data/mmffs_tor.par
openbabel-2.3.2/data/mmffstbn.par
openbabel-2.3.2/data/mmfftor.par
openbabel-2.3.2/data/mmffvdw.par
openbabel-2.3.2/data/mpC.txt
openbabel-2.3.2/data/mr.txt
openbabel-2.3.2/data/patterns.txt
openbabel-2.3.2/data/phmodel.txt
openbabel-2.3.2/data/phmodeldata.h
openbabel-2.3.2/data/plugindefines.txt
openbabel-2.3.2/data/psa.txt
openbabel-2.3.2/data/qeq.txt
openbabel-2.3.2/data/resdata.h
openbabel-2.3.2/data/resdata.txt
openbabel-2.3.2/data/ringtyp.txt
openbabel-2.3.2/data/SMARTS_InteLigand.txt
openbabel-2.3.2/data/space-groups.txt
openbabel-2.3.2/data/space-groups.xsl
openbabel-2.3.2/data/splash.png
openbabel-2.3.2/data/superatom.txt
openbabel-2.3.2/data/svgformat.script
openbabel-2.3.2/data/templates.sdf
openbabel-2.3.2/data/torlib.h
openbabel-2.3.2/data/torlib.txt
openbabel-2.3.2/data/types.h
openbabel-2.3.2/data/types.txt
openbabel-2.3.2/data/UFF.prm
openbabel-2.3.2/cmake/modules/
openbabel-2.3.2/cmake/modules/FindCairo.cmake
openbabel-2.3.2/cmake/modules/FindEigen2.cmake
openbabel-2.3.2/cmake/modules/FindEigen3.cmake
openbabel-2.3.2/cmake/modules/FindInchi.cmake
openbabel-2.3.2/cmake/modules/MacroEnsureVersion.cmake
openbabel-2.3.2/cmake/modules/UsePythonTest.cmake
-- The C compiler identification is GNU 4.9.3
-- The CXX compiler identification is GNU 4.9.3
-- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc
CMake Error at /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/2.5.8/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec942736540/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec942736540.dir/build.make
  CMakeFiles/cmTryCompileExec942736540.dir/build

  gmake[1]: Entering directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeTmp'


  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec942736540.dir/testCCompiler.c.o

  /opt/cray/craype/2.5.8/bin/cc -o
  CMakeFiles/cmTryCompileExec942736540.dir/testCCompiler.c.o -c
  /u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeTmp/testCCompiler.c


  Linking C executable cmTryCompileExec942736540

  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E cmake_link_script
  CMakeFiles/cmTryCompileExec942736540.dir/link.txt --verbose=1

  /opt/cray/craype/2.5.8/bin/cc
  CMakeFiles/cmTryCompileExec942736540.dir/testCCompiler.c.o -o
  cmTryCompileExec942736540 -rdynamic

  /usr/bin/ld: warning: libxpmem.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /usr/bin/ld: warning: libudreg.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_remove'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheDestroy'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_DecrRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Register'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `udreg_region_get_pagesize'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_make'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_attach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetStat'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheCreate'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Evict'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_release'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_detach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheAccess'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_get'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheSetDebugPrintf'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetVersion'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Unregister'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheRelease'

  collect2: error: ld returned 1 exit status

  gmake[1]: *** [cmTryCompileExec942736540] Error 1

  gmake[1]: Leaving directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec942736540/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:6 (project)


nice make -j8
make: *** No targets specified and no makefile found.  Stop.
make install
make: *** No rule to make target `install'.  Stop.
 
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$INSTDIR/openbabel-2.3.2/install/lib
 
export CC=cc
export CXX=CC
export FC=ftn
 
# install plplot library
cd $INSTDIR
git clone git://git.code.sf.net/p/plplot/plplot plplot.git
-- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeOutput.log".
See also "/u/system/bwjenkins/rmg-spp/openbabel-2.3.2/build/CMakeFiles/CMakeError.log".
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Checking out files: 100% (1967/1967), done.
cd plplot.git/
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$INSTDIR/plplot.git/install ..
-- The C compiler identification is GNU 4.9.3
-- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc
CMake Error at /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestCCompiler.cmake:61 (message):
  The C compiler "/opt/cray/craype/2.5.8/bin/cc" is not able to compile a
  simple test program.

  It fails with the following output:

   Change Dir: /u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec4010881388/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec4010881388.dir/build.make
  CMakeFiles/cmTryCompileExec4010881388.dir/build

  gmake[1]: Entering directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeTmp'

  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building C object
  CMakeFiles/cmTryCompileExec4010881388.dir/testCCompiler.c.o

  /opt/cray/craype/2.5.8/bin/cc -o
  CMakeFiles/cmTryCompileExec4010881388.dir/testCCompiler.c.o -c
  /u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeTmp/testCCompiler.c


  Linking C executable cmTryCompileExec4010881388

  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E cmake_link_script
  CMakeFiles/cmTryCompileExec4010881388.dir/link.txt --verbose=1

  /opt/cray/craype/2.5.8/bin/cc
  CMakeFiles/cmTryCompileExec4010881388.dir/testCCompiler.c.o -o
  cmTryCompileExec4010881388 -rdynamic

  /usr/bin/ld: warning: libxpmem.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /usr/bin/ld: warning: libudreg.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_remove'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheDestroy'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_DecrRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Register'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `udreg_region_get_pagesize'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_make'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_attach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetStat'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheCreate'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Evict'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_release'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_detach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheAccess'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_get'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheSetDebugPrintf'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetVersion'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Unregister'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheRelease'

  collect2: error: ld returned 1 exit status

  gmake[1]: *** [cmTryCompileExec4010881388] Error 1

  gmake[1]: Leaving directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeTmp'

  gmake: *** [cmTryCompileExec4010881388/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:88 (enable_language)


make
make: *** No targets specified and no makefile found.  Stop.
make install
make: *** No rule to make target `install'.  Stop.
 
# install CPU-version of RMG
cd $INSTDIR
wget http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz
--2017-03-29 08:59:44--  http://downloads.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz
Resolving downloads.sourceforge.net... 216.34.181.59
Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://iweb.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz [following]
--2017-03-29 08:59:44--  https://iweb.dl.sourceforge.net/project/rmgdft/Releases/2.1/Sources/rmg-release_2.1.tar.gz
Resolving iweb.dl.sourceforge.net... 192.175.120.182, 2607:f748:10:12::5f:2
Connecting to iweb.dl.sourceforge.net|192.175.120.182|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 42363399 (40M) [application/x-gzip]
Saving to: `rmg-release_2.1.tar.gz'

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  9650K .......... .......... .......... .......... .......... 23% 83.5M 2s
  9700K .......... .......... .......... .......... .......... 23% 80.9M 2s
  9750K .......... .......... .......... .......... .......... 23% 84.2M 2s
  9800K .......... .......... .......... .......... .......... 23% 80.1M 2s
  9850K .......... .......... .......... .......... .......... 23% 76.1M 2s
  9900K .......... .......... .......... .......... .......... 24% 82.5M 2s
  9950K .......... .......... .......... .......... .......... 24% 81.7M 2s
 10000K .......... .......... .......... .......... .......... 24% 60.4M 2s
 10050K .......... ....-- Check for working C compiler: /opt/cray/craype/2.5.8/bin/cc -- broken
-- Configuring incomplete, errors occurred!
See also "/u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeOutput.log".
See also "/u/system/bwjenkins/rmg-spp/plplot.git/build/CMakeFiles/CMakeError.log".
...... .......... .......... .......... 24% 77.2M 2s
 10100K .......... .......... .......... .......... .......... 24% 81.6M 2s
 10150K .......... .......... .......... .......... .......... 24% 89.6M 2s
 10200K .......... .......... .......... .......... .......... 24% 85.5M 2s
 10250K .......... .......... .......... .......... .......... 24% 89.1M 2s
 10300K .......... .......... .......... .......... .......... 25% 2.42M 2s
 10350K .......... .......... .......... .......... .......... 25% 79.8M 2s
 10400K .......... .......... .......... .......... .......... 25% 45.1M 2s
 10450K .......... .......... .......... .......... .......... 25% 72.6M 2s
 10500K .......... .......... .......... .......... .......... 25% 76.4M 2s
 10550K .......... .......... .......... .......... .......... 25% 77.7M 2s
 10600K .......... .......... .......... .......... .......... 25% 81.7M 2s
 10650K .......... .......... .......... .......... .......... 25% 79.8M 2s
 10700K .......... .......... .......... .......... .......... 25% 83.1M 2s
 10750K .......... .......... .......... .......... .......... 26% 72.5M 2s
 10800K .......... .......... .......... .......... .......... 26% 58.4M 2s
 10850K .......... .......... .......... .......... .......... 26% 81.6M 2s
 10900K .......... .......... .......... .......... .......... 26% 80.5M 2s
 10950K .......... .......... .......... .......... .......... 26% 80.7M 2s
 11000K .......... .......... .......... .......... .......... 26% 81.6M 2s
 11050K .......... .......... .......... .......... .......... 26% 82.8M 2s
 11100K .......... .......... .......... .......... .......... 26% 89.3M 2s
 11150K .......... .......... .......... .......... .......... 27% 2.46M 2s
 11200K .......... .......... .......... .......... .......... 27% 53.9M 2s
 11250K .......... .......... .......... .......... .......... 27% 59.8M 2s
 11300K .......... .......... .......... .......... .......... 27% 61.6M 2s
 11350K .......... .......... .......... .......... .......... 27% 82.0M 2s
 11400K .......... .......... .......... .......... .......... 27% 81.0M 2s
 11450K .......... .......... .......... .......... .......... 27% 86.8M 2s
 11500K .......... .......... .......... .......... .......... 27% 86.8M 2s
 11550K .......... .......... .......... .......... .......... 28% 89.7M 2s
 11600K .......... .......... .......... .......... .......... 28% 65.6M 2s
 11650K .......... .......... .......... .......... .......... 28% 89.1M 2s
 11700K .......... .......... .......... .......... .......... 28% 74.8M 2s
 11750K .......... .......... .......... .......... .......... 28% 88.0M 2s
 11800K .......... .......... .......... .......... .......... 28% 84.7M 2s
 11850K .......... .......... .......... .......... .......... 28% 87.1M 2s
 11900K .......... .......... .......... .......... .......... 28% 87.2M 2s
 11950K .......... .......... .......... .......... .......... 29% 97.4M 2s
 12000K .......... .......... .......... .......... .......... 29% 2.38M 2s
 12050K .......... .......... .......... .......... .......... 29% 70.4M 2s
 12100K .......... .......... .......... .......... .......... 29% 77.2M 2s
 12150K .......... .......... .......... .......... .......... 29% 50.3M 2s
 12200K .......... .......... .......... .......... .......... 29% 86.3M 2s
 12250K .......... .......... .......... .......... .......... 29% 83.9M 2s
 12300K .......... .......... .......... .......... .......... 29% 87.5M 2s
 12350K .......... .......... .......... .......... .......... 29% 79.4M 2s
 12400K .......... .......... .......... .......... .......... 30% 64.5M 2s
 12450K .......... .......... .......... .......... .......... 30% 86.0M 2s
 12500K .......... .......... .......... .......... .......... 30% 86.1M 2s
 12550K .......... .......... .......... .......... .......... 30% 89.7M 2s
 12600K .......... .......... .......... .......... .......... 30% 95.5M 2s
 12650K .......... .......... .......... .......... .......... 30% 83.7M 2s
 12700K .......... .......... .......... .......... .......... 30% 86.1M 2s
 12750K .......... .......... .......... .......... .......... 30% 88.3M 2s
 12800K .......... .......... .......... .......... .......... 31% 66.1M 2s
 12850K .......... .......... .......... .......... .......... 31% 97.7M 2s
 12900K .......... .......... .......... .......... .......... 31% 2.40M 2s
 12950K .......... .......... .......... .......... .......... 31% 84.4M 2s
 13000K .......... .......... .......... .......... .......... 31% 60.0M 2s
 13050K .......... .......... .......... .......... .......... 31% 61.7M 2s
 13100K .......... .......... .......... .......... .......... 31% 86.3M 2s
 13150K .......... .......... .......... .......... .......... 31% 87.4M 2s
 13200K .......... .......... .......... .......... .......... 32% 64.9M 2s
 13250K .......... .......... .......... .......... .......... 32% 90.4M 2s
 13300K .......... .......... .......... .......... .......... 32% 85.7M 2s
 13350K .......... .......... .......... .......... .......... 32% 79.9M 2s
 13400K .......... .......... .......... .......... .......... 32% 92.4M 2s
 13450K .......... .......... .......... .......... .......... 32% 95.2M 2s
 13500K .......... .......... .......... .......... .......... 32% 83.5M 2s
 13550K .......... .......... .......... .......... .......... 32% 80.5M 2s
 13600K .......... .......... .......... .......... .......... 32% 56.8M 2s
 13650K .......... .......... .......... .......... .......... 33% 82.7M 2s
 13700K .......... .......... .......... .......... .......... 33% 91.3M 2s
 13750K .......... .......... .......... .......... .......... 33% 2.29M 2s
 13800K .......... .......... .......... .......... .......... 33% 70.9M 2s
 13850K .......... .......... .......... .......... .......... 33% 78.8M 2s
 13900K .......... .......... .......... .......... .......... 33% 60.5M 2s
 13950K .......... .......... .......... .......... .......... 33% 48.2M 2s
 14000K .......... .......... .......... .......... .......... 33% 55.0M 2s
 14050K .......... .......... .......... .......... .......... 34% 80.5M 2s
 14100K .......... .......... .......... .......... .......... 34% 83.1M 2s
 14150K .......... .......... .......... .......... .......... 34% 75.2M 2s
 14200K .......... .......... .......... .......... .......... 34% 72.9M 2s
 14250K .......... .......... .......... .......... .......... 34% 70.4M 2s
 14300K .......... .......... .......... .......... .......... 34% 77.6M 2s
 14350K .......... .......... .......... .......... .......... 34% 78.7M 2s
 14400K .......... .......... .......... .......... .......... 34% 66.4M 2s
 14450K .......... .......... .......... .......... .......... 35%  102M 2s
 14500K .......... .......... .......... .......... .......... 35%  116M 2s
 14550K .......... .......... .......... .......... .......... 35%  116M 2s
 14600K .......... .......... .......... .......... .......... 35%  114M 2s
 14650K .......... .......... .......... .......... .......... 35% 2.48M 2s
 14700K .......... .......... .......... .......... .......... 35% 74.5M 2s
 14750K .......... .......... .......... .......... .......... 35% 87.5M 2s
 14800K .......... .......... .......... .......... .......... 35% 34.9M 2s
 14850K .......... .......... .......... .......... .......... 36% 72.1M 2s
 14900K .......... .......... .......... .......... .......... 36% 76.2M 2s
 14950K .......... .......... .......... .......... .......... 36% 79.6M 2s
 15000K .......... .......... .......... .......... .......... 36% 85.0M 2s
 15050K .......... .......... .......... .......... .......... 36% 84.4M 2s
 15100K .......... .......... .......... .......... .......... 36% 86.1M 1s
 15150K .......... .......... .......... .......... .......... 36% 89.6M 1s
 15200K .......... .......... .......... .......... .......... 36% 62.1M 1s
 15250K .......... .......... .......... .......... .......... 36% 87.7M 1s
 15300K .......... .......... .......... .......... .......... 37% 88.7M 1s
 15350K .......... .......... .......... .......... .......... 37% 84.6M 1s
 15400K .......... .......... .......... .......... .......... 37% 99.1M 1s
 15450K .......... .......... .......... .......... .......... 37% 99.3M 1s
 15500K .......... .......... .......... .......... .......... 37%  106M 1s
 15550K .......... .......... .......... .......... .......... 37% 2.43M 1s
 15600K .......... .......... .......... .......... .......... 37% 61.3M 1s
 15650K .......... .......... .......... .......... .......... 37% 74.8M 1s
 15700K .......... .......... .......... .......... .......... 38% 42.5M 1s
 15750K .......... .......... .......... .......... .......... 38% 79.3M 1s
 15800K .......... .......... .......... .......... .......... 38% 65.3M 1s
 15850K .......... .......... .......... .......... .......... 38% 86.7M 1s
 15900K .......... .......... .......... .......... .......... 38% 52.6M 1s
 15950K .......... .......... .......... .......... .......... 38% 77.6M 1s
 16000K .......... .......... .......... .......... .......... 38% 62.8M 1s
 16050K .......... .......... .......... .......... .......... 38% 86.3M 1s
 16100K .......... .......... .......... .......... .......... 39% 88.2M 1s
 16150K .......... .......... .......... .......... .......... 39% 81.0M 1s
 16200K .......... .......... .......... .......... .......... 39% 87.9M 1s
 16250K .......... .......... .......... .......... .......... 39% 88.6M 1s
 16300K .......... .......... .......... .......... .......... 39% 87.7M 1s
 16350K .......... .......... .......... .......... .......... 39% 92.6M 1s
 16400K .......... .......... .......... .......... .......... 39% 2.48M 1s
 16450K .......... .......... .......... .......... .......... 39% 80.2M 1s
 16500K .......... .......... .......... .......... .......... 40% 79.6M 1s
 16550K .......... .......... .......... .......... .......... 40% 66.3M 1s
 16600K .......... .......... .......... .......... .......... 40% 46.0M 1s
 16650K .......... .......... .......... .......... .......... 40% 60.4M 1s
 16700K .......... .......... .......... .......... .......... 40% 77.4M 1s
 16750K .......... .......... .......... .......... .......... 40% 49.9M 1s
 16800K .......... .......... .......... .......... .......... 40% 8.61M 1s
 16850K .......... .......... .......... .......... .......... 40% 85.5M 1s
 16900K .......... .......... .......... .......... .......... 40% 88.1M 1s
 16950K .......... .......... .......... .......... .......... 41% 87.8M 1s
 17000K .......... .......... .......... .......... .......... 41% 92.8M 1s
 17050K .......... .......... .......... .......... .......... 41% 89.1M 1s
 17100K .......... .......... .......... .......... .......... 41% 89.7M 1s
 17150K .......... .......... .......... .......... .......... 41% 91.1M 1s
 17200K .......... .......... .......... .......... .......... 41% 66.3M 1s
 17250K .......... .......... .......... .......... .......... 41% 88.6M 1s
 17300K .......... .......... .......... .......... .......... 41% 3.23M 1s
 17350K .......... .......... .......... .......... .......... 42% 77.4M 1s
 17400K .......... .......... .......... .......... .......... 42% 73.1M 1s
 17450K .......... .......... .......... .......... .......... 42% 74.7M 1s
 17500K .......... .......... .......... .......... .......... 42% 76.9M 1s
 17550K .......... .......... .......... .......... .......... 42% 78.9M 1s
 17600K .......... .......... .......... .......... .......... 42% 43.5M 1s
 17650K .......... .......... .......... .......... .......... 42% 8.85M 1s
 17700K .......... .......... .......... .......... .......... 42% 81.1M 1s
 17750K .......... .......... .......... .......... .......... 43% 76.6M 1s
 17800K .......... .......... .......... .......... .......... 43% 84.0M 1s
 17850K .......... .......... .......... .......... .......... 43% 80.5M 1s
 17900K .......... .......... .......... .......... .......... 43% 75.8M 1s
 17950K .......... .......... .......... .......... .......... 43% 86.7M 1s
 18000K .......... .......... .......... .......... .......... 43% 71.9M 1s
 18050K .......... .......... .......... .......... .......... 43% 88.0M 1s
 18100K .......... .......... .......... .......... .......... 43% 99.3M 1s
 18150K .......... .......... .......... .......... .......... 43% 97.8M 1s
 18200K .......... .......... .......... .......... .......... 44% 3.24M 1s
 18250K .......... .......... .......... .......... .......... 44% 80.8M 1s
 18300K .......... .......... .......... .......... .......... 44% 83.2M 1s
 18350K .......... .......... .......... .......... .......... 44% 55.2M 1s
 18400K .......... .......... .......... .......... .......... 44% 64.0M 1s
 18450K .......... .......... .......... .......... .......... 44% 75.7M 1s
 18500K .......... .......... .......... .......... .......... 44% 55.4M 1s
 18550K .......... .......... .......... .......... .......... 44% 8.71M 1s
 18600K .......... .......... .......... .......... .......... 45% 84.0M 1s
 18650K .......... .......... .......... .......... .......... 45% 77.2M 1s
 18700K .......... .......... .......... .......... .......... 45% 77.1M 1s
 18750K .......... .......... .......... .......... .......... 45% 80.3M 1s
 18800K .......... .......... .......... .......... .......... 45% 54.7M 1s
 18850K .......... .......... .......... .......... .......... 45% 77.2M 1s
 18900K .......... .......... .......... .......... .......... 45% 80.9M 1s
 18950K .......... .......... .......... .......... .......... 45% 77.5M 1s
 19000K .......... .......... .......... .......... .......... 46% 86.8M 1s
 19050K .......... .......... .......... .......... .......... 46% 3.41M 1s
 19100K .......... .......... .......... .......... .......... 46% 63.3M 1s
 19150K .......... .......... .......... .......... .......... 46% 70.1M 1s
 19200K .......... .......... .......... .......... .......... 46% 47.6M 1s
 19250K .......... .......... .......... .......... .......... 46% 88.8M 1s
 19300K .......... .......... .......... .......... .......... 46% 77.2M 1s
 19350K .......... .......... .......... .......... .......... 46% 72.1M 1s
 19400K .......... .......... .......... .......... .......... 47% 57.1M 1s
 19450K .......... .......... .......... .......... .......... 47% 8.08M 1s
 19500K .......... .......... .......... .......... .......... 47% 66.1M 1s
 19550K .......... .......... .......... .......... .......... 47% 88.3M 1s
 19600K .......... .......... .......... .......... .......... 47% 61.5M 1s
 19650K .......... .......... .......... .......... .......... 47% 84.5M 1s
 19700K .......... .......... .......... .......... .......... 47% 77.6M 1s
 19750K .......... .......... .......... .......... .......... 47% 84.6M 1s
 19800K .......... .......... .......... .......... .......... 47% 78.4M 1s
 19850K .......... .......... .......... .......... .......... 48% 84.9M 1s
 19900K .......... .......... .......... .......... .......... 48% 93.9M 1s
 19950K .......... .......... .......... .......... .......... 48% 3.51M 1s
 20000K .......... .......... .......... .......... .......... 48% 42.8M 1s
 20050K .......... .......... .......... .......... .......... 48% 88.9M 1s
 20100K .......... .......... .......... .......... .......... 48% 60.6M 1s
 20150K .......... .......... .......... .......... .......... 48% 89.3M 1s
 20200K .......... .......... .......... .......... .......... 48% 90.1M 1s
 20250K .......... .......... .......... .......... .......... 49% 54.2M 1s
 20300K .......... .......... .......... .......... .......... 49% 68.1M 1s
 20350K .......... .......... .......... .......... .......... 49% 7.46M 1s
 20400K .......... .......... .......... .......... .......... 49% 66.5M 1s
 20450K .......... .......... .......... .......... .......... 49% 73.3M 1s
 20500K .......... .......... .......... .......... .......... 49% 84.0M 1s
 20550K .......... .......... .......... .......... .......... 49% 78.1M 1s
 20600K .......... .......... .......... .......... .......... 49% 73.8M 1s
 20650K .......... .......... .......... .......... .......... 50% 84.4M 1s
 20700K .......... .......... .......... .......... .......... 50% 85.4M 1s
 20750K .......... .......... .......... .......... .......... 50% 91.9M 1s
 20800K .......... .......... .......... .......... .......... 50% 74.1M 1s
 20850K .......... .......... .......... .......... .......... 50% 3.48M 1s
 20900K .......... .......... .......... .......... .......... 50% 51.6M 1s
 20950K .......... .......... .......... .......... .......... 50% 52.2M 1s
 21000K .......... .......... .......... .......... .......... 50% 49.0M 1s
 21050K .......... .......... .......... .......... .......... 51% 71.2M 1s
 21100K .......... .......... .......... .......... .......... 51% 86.6M 1s
 21150K .......... .......... .......... .......... .......... 51% 86.9M 1s
 21200K .......... .......... .......... .......... .......... 51% 8.41M 1s
 21250K .......... .......... .......... .......... .......... 51% 45.5M 1s
 21300K .......... .......... .......... .......... .......... 51% 73.2M 1s
 21350K .......... .......... .......... .......... .......... 51% 85.2M 1s
 21400K .......... .......... .......... .......... .......... 51% 82.7M 1s
 21450K .......... .......... .......... .......... .......... 51% 84.1M 1s
 21500K .......... .......... .......... .......... .......... 52% 85.1M 1s
 21550K .......... .......... .......... .......... .......... 52% 80.7M 1s
 21600K .......... .......... .......... .......... .......... 52% 58.7M 1s
 21650K .......... .......... .......... .......... .......... 52% 92.4M 1s
 21700K .......... .......... .......... .......... .......... 52% 97.9M 1s
 21750K .......... .......... .......... .......... .......... 52% 3.56M 1s
 21800K .......... .......... .......... .......... .......... 52% 51.5M 1s
 21850K .......... .......... .......... .......... .......... 52% 57.7M 1s
 21900K .......... .......... .......... .......... .......... 53% 52.1M 1s
 21950K .......... .......... .......... .......... .......... 53% 73.9M 1s
 22000K .......... .......... .......... .......... .......... 53% 62.3M 1s
 22050K .......... .......... .......... .......... .......... 53% 61.9M 1s
 22100K .......... .......... .......... .......... .......... 53% 9.27M 1s
 22150K .......... .......... .......... .......... .......... 53% 39.6M 1s
 22200K .......... .......... .......... .......... .......... 53% 69.4M 1s
 22250K .......... .......... .......... .......... .......... 53% 86.2M 1s
 22300K .......... .......... .......... .......... .......... 54% 88.3M 1s
 22350K .......... .......... .......... .......... .......... 54% 87.8M 1s
 22400K .......... .......... .......... .......... .......... 54% 64.5M 1s
 22450K .......... .......... .......... .......... .......... 54% 84.2M 1s
 22500K .......... .......... .......... .......... .......... 54% 75.4M 1s
 22550K .......... .......... .......... .......... .......... 54% 86.0M 1s
 22600K .......... .......... .......... .......... .......... 54% 91.1M 1s
 22650K .......... .......... .......... .......... .......... 54% 3.57M 1s
 22700K .......... .......... .......... .......... .......... 54% 51.5M 1s
 22750K .......... .......... .......... .......... .......... 55% 63.7M 1s
 22800K .......... .......... .......... .......... .......... 55% 41.9M 1s
 22850K .......... .......... .......... .......... .......... 55% 68.2M 1s
 22900K .......... .......... .......... .......... .......... 55% 78.7M 1s
 22950K .......... .......... .......... .......... .......... 55% 76.9M 1s
 23000K .......... .......... .......... .......... .......... 55% 9.20M 1s
 23050K .......... .......... .......... .......... .......... 55% 34.8M 1s
 23100K .......... .......... .......... .......... .......... 55% 75.4M 1s
 23150K .......... .......... .......... .......... .......... 56% 76.1M 1s
 23200K .......... .......... .......... .......... .......... 56% 62.7M 1s
 23250K .......... .......... .......... .......... .......... 56% 84.7M 1s
 23300K .......... .......... .......... .......... .......... 56% 86.5M 1s
 23350K .......... .......... .......... .......... .......... 56% 28.7M 1s
 23400K .......... .......... .......... .......... .......... 56% 68.1M 1s
 23450K .......... .......... .......... .......... .......... 56% 78.5M 1s
 23500K .......... .......... .......... .......... .......... 56% 65.2M 1s
 23550K .......... .......... .......... .......... .......... 57% 4.22M 1s
 23600K .......... .......... .......... .......... .......... 57% 38.2M 1s
 23650K .......... .......... .......... .......... .......... 57% 58.3M 1s
 23700K .......... .......... .......... .......... .......... 57% 47.5M 1s
 23750K .......... .......... .......... .......... .......... 57% 81.0M 1s
 23800K .......... .......... .......... .......... .......... 57% 82.2M 1s
 23850K .......... .......... .......... .......... .......... 57% 71.7M 1s
 23900K .......... .......... .......... .......... .......... 57% 67.6M 1s
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 24350K .......... .......... .......... .......... .......... 58% 70.9M 1s
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 26350K .......... .......... .......... .......... .......... 63% 3.73M 1s
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 27100K .......... .......... .......... .......... .......... 65% 76.2M 1s
 27150K .......... .......... .......... .......... .......... 65% 81.1M 1s
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 27300K .......... .......... .......... .......... .......... 66% 55.0M 1s
 27350K .......... .......... .......... .......... .......... 66% 47.8M 1s
 27400K .......... .......... .......... .......... .......... 66% 78.4M 1s
 27450K .......... .......... .......... .......... .......... 66% 89.7M 1s
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 28650K .......... .......... .......... .......... .......... 69% 95.6M 1s
 28700K .......... .......... .......... .......... .......... 69%  103M 1s
 28750K .......... .......... .......... .......... .......... 69% 84.0M 1s
 28800K .......... .......... .......... .......... .......... 69% 68.7M 1s
 28850K .......... .......... .......... .......... .......... 69% 96.3M 1s
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 28950K .......... .......... .......... .......... .......... 70% 74.5M 1s
 29000K .......... .......... .......... .......... .......... 70% 86.5M 1s
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 29150K .......... .......... .......... .......... .......... 70% 28.5M 1s
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 29250K .......... .......... .......... .......... .......... 70% 64.0M 1s
 29300K .......... .......... .......... .......... .......... 70% 85.7M 1s
 29350K .......... .......... .......... .......... .......... 71% 84.2M 1s
 29400K .......... .......... .......... .......... .......... 71% 87.5M 1s
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 29500K .......... .......... .......... .......... .......... 71% 10.4M 1s
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 29650K .......... .......... .......... .......... .......... 71% 64.3M 1s
 29700K .......... .......... .......... .......... .......... 71% 82.2M 1s
 29750K .......... .......... .......... .......... .......... 72% 80.9M 1s
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 30250K .......... .......... .......... .......... .......... 73% 90.4M 1s
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 30350K .......... .......... .......... .......... .......... 73% 91.5M 1s
 30400K .......... .......... .......... .......... .......... 73% 65.7M 0s
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 30700K .......... .......... .......... .......... .......... 74% 82.9M 0s
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 33150K .......... .......... .......... .......... .......... 80% 62.5M 0s
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 33300K .......... .......... .......... .......... .......... 80% 87.1M 0s
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 34300K .......... .......... .......... .......... .......... 83% 79.0M 0s
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 35150K .......... .......... .......... .......... .......... 85% 5.87M 0s
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 35250K .......... .......... .......... .......... .......... 85% 79.8M 0s
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 36150K .......... .......... .......... .......... .......... 87% 78.8M 0s
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 36700K .......... .......... .......... .......... .......... 88% 35.6M 0s
 36750K .......... .......... .......... .......... .......... 88% 68.7M 0s
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 37100K .......... .......... .......... .......... .......... 89% 77.0M 0s
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 37200K .......... .......... .......... .......... .......... 90% 60.5M 0s
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2017-03-29 08:59:46 (23.0 MB/s) - `rmg-release_2.1.tar.gz' saved [42363399/42363399]

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mkdir build-cpu; cd build-cpu
cmake -DOPENBABEL_INCLUDES=$INSTDIR/openbabel-2.3.2/install/include/openbabel-2.0/openbabel -DOPENBABEL_LIBRARIES=$INSTDIR/openbabel-2.3.2/install/lib/libopenbabel.so.4.0.2 -DPLplot_INCLUDE_DIR=$INSTDIR/plplot.git/install/include -DPLplot_cxx_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplotcxx.so -DPLplot_LIBRARY=$INSTDIR/plplot.git/install/lib/libplplot.so ..
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-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/cray/craype/2.5.8/bin/ftn
CMake Error at /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/share/cmake-3.1/Modules/CMakeTestFortranCompiler.cmake:54 (message):
  The Fortran compiler "/opt/cray/craype/2.5.8/bin/ftn" is not able to
  compile a simple test program.

  It fails with the following output:

   Change Dir: /u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeTmp

  

  Run Build Command:"/usr/bin/gmake" "cmTryCompileExec489314404/fast"

  /usr/bin/gmake -f CMakeFiles/cmTryCompileExec489314404.dir/build.make
  CMakeFiles/cmTryCompileExec489314404.dir/build

  gmake[1]: Entering directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeTmp'


  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E
  cmake_progress_report
  /u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeTmp/CMakeFiles
  1

  Building Fortran object
  CMakeFiles/cmTryCompileExec489314404.dir/testFortranCompiler.f.o

  /opt/cray/craype/2.5.8/bin/ftn -c
  /u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeTmp/testFortranCompiler.f
  -o CMakeFiles/cmTryCompileExec489314404.dir/testFortranCompiler.f.o

  Linking Fortran executable cmTryCompileExec489314404

  /mnt/a/sw/xe/cmake/3.1.3/sles11.3_gnu4.3.4/bin/cmake -E cmake_link_script
  CMakeFiles/cmTryCompileExec489314404.dir/link.txt --verbose=1

  /opt/cray/craype/2.5.8/bin/ftn
  CMakeFiles/cmTryCompileExec489314404.dir/testFortranCompiler.f.o -o
  cmTryCompileExec489314404 -rdynamic

  /usr/bin/ld: warning: libxpmem.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /usr/bin/ld: warning: libudreg.so.0, needed by
  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so, not found
  (try using -rpath or -rpath-link)

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_remove'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheDestroy'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_DecrRefcount'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Register'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `udreg_region_get_pagesize'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_make'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_attach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetStat'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheCreate'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Evict'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_release'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_detach'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheAccess'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `xpmem_get'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheSetDebugPrintf'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_GetVersion'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_Unregister'

  /opt/cray/mpt/7.5.0/gni/mpich-gnu/4.9/lib/libmpich_gnu_49.so: undefined
  reference to `UDREG_CacheRelease'

  collect2: error: ld returned 1 exit status

  gmake[1]: *** [cmTryCompileExec489314404] Error 1

  gmake[1]: Leaving directory
  `/mnt/a/u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeTmp'


  gmake: *** [cmTryCompileExec489314404/fast] Error 2

  

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:16 (enable_language)


nice make -j12 rmg-cpu
make: *** No rule to make target `rmg-cpu'.  Stop.

rm -rf ~/scratch/rmg-spp
-- Check for working Fortran compiler: /opt/cray/craype/2.5.8/bin/ftn  -- broken
-- Configuring incomplete, errors occurred!
See also "/u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeOutput.log".
See also "/u/system/bwjenkins/rmg-spp/rmg-release_2.1/build-cpu/CMakeFiles/CMakeError.log".
mkdir -p ~/scratch/rmg-spp
cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs ~/scratch/rmg-spp/run.pbs
cp: cannot stat `/projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/run.pbs': No such file or directory
cp /projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu ~/scratch/rmg-spp/
cp: cannot stat `/projects/bluewaters/benchmarking/SPP/rmg/test-0100-cpu/302waters.rmg_cpu': No such file or directory
cd ~/scratch/rmg-spp
cat run.pbs | grep -v aprun > myrun.pbs
cat: run.pbs: No such file or directory
echo "time aprun -n 400 -N 4 -d 8 -cc numa_node  ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu 302waters.rmg_cpu" >> myrun.pbs

cat -n myrun.pbs

MYJOBID=`qsub myrun.pbs`
qsub myrun.pbs
bash: line 64: qsub: command not found
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for.sh $MYJOBID
tail *.log > ~/rmg-spp/rmg.logtail.txt
tail: cannot open `*.log' for reading: No such file or directory

grep "real" z302water_cpu100.o*
grep: z302water_cpu100.o*: No such file or directory
MYREALTIME=`egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1` 
egrep "real\s" z302water_cpu100.o* | cut -dl -f2 | cut -dm -f1
egrep: z302water_cpu100.o*: No such file or directory
echo "YVALUE= $MYREALTIME" > ~/rmg-spp/rmg.realtime
cat -n ~/rmg-spp/rmg.realtime
     1	time aprun -n 400 -N 4 -d 8 -cc numa_node  ~/rmg-spp/rmg-release_2.1/build-cpu/rmg-cpu 302waters.rmg_cpu
MYJOBID=
=== RUNNING /u/staff/arnoldg/ior/wait_for.sh ===
/u/staff/arnoldg/ior/wait_for.sh: missing argument for jobid
     1	YVALUE= 
[SSH] exit-status: 0
[rmg-spp] $ /bin/sh -xe /tmp/jenkins4301686818328065055.sh
+ scp 'BW_REMOTE:~/rmg-spp/*.txt' /var/lib/jenkins/workspace/rmg-spp

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Blue Waters down for maintenance that started on Tuesday Mar 28th, at
12:01am (midnight), extending to Wednesday Mar 29th 04:00pm.

Blue Waters Admin Team
+ scp 'BW_REMOTE:~/rmg-spp/rmg.realtime' /var/lib/jenkins/workspace/rmg-spp

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Blue Waters down for maintenance that started on Tuesday Mar 28th, at
12:01am (midnight), extending to Wednesday Mar 29th 04:00pm.

Blue Waters Admin Team
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/rmg-spp/rmg.realtime
Finished: SUCCESS