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Started by timer
Building on master in workspace /var/lib/jenkins/workspace/slurm-stream
executing script:

module load slurm
#
# 1st torque job in our jenkins converted to slurm
#   NOTE: slurm tries to interpret PBS directives so drop them or comment them out of scripts
#   NOTE: aprun is not available to slurm, serial jobs only for now
#
~arnoldg/ior/myenv.sh
mkdir stream-jenkins
cd stream-jenkins
rm -rf *
wget https://www.cs.virginia.edu/stream/FTP/Code/stream.c
make stream


echo "#!/bin/bash" > stream.pbs
#echo "#PBS -lnodes=2:ppn=32:xe,walltime=00:05:00 -Nstream" >> stream.pbs
echo "cd  ~/stream-jenkins" >> stream.pbs
echo "OMP_NUM_THREADS=16  ~/stream-jenkins/stream  > streamout" >> stream.pbs
echo "grep Triad: streamout   | cut -d: -f2 | cut -d. -f1 > stream.datB" >> stream.pbs
echo "echo YVALUE= > stream.datA" >> stream.pbs
echo "paste stream.datA stream.datB > stream.triad" >> stream.pbs
echo "hostname > stream-compute-node" >> stream.pbs

cat -n stream.pbs

#MYJOBID=`qsub stream.pbs -lnodes=3:ppn=32:xe,walltime=00:15:00 -Nnomachine `
MYJOBID=`sbatch -N 1 -t 00:05:00 --job-name=slurm_stream stream.pbs |  sed -e s/"Submitted batch job "//g `
echo MYJOBID=$MYJOBID
~arnoldg/ior/wait_for_slurmjob.sh $MYJOBID

echo "=== JOB RAN ON ==="
cat ~/stream-jenkins/stream-compute-node
rm -f ~/stream-jenkins/stream-compute-node
mkdir: cannot create directory `stream-jenkins': File exists
=== RUNNING /u/staff/arnoldg/ior/myenv.sh ===
HOST=jyc1
HOME=/u/system/bwjenkins
SCRATCH=/u/system/bwjenkins/scratch
     ls SCRATCH:
mdtest
setsm_benchmark
SPP-PPM
stripe8
sw_config
sw_workdir
test.log
tests
     my id:
uid=49294(bwjenkins) gid=16228(BW_System) groups=16228(BW_System),999(login_user),1000(ie_user),1001(hpss_user),1009(swtools),16237(jnd)
Currently Loaded Modulefiles:
  1) modules/3.2.10.5
  2) nodestat/2.2-1.0502.60539.1.31.gem
  3) sdb/1.1-1.0502.63652.4.27.gem
  4) alps/5.2.4-2.0502.9774.31.12.gem
  5) lustre-cray_gem_s/2.5_3.0.101_0.46.1_1.0502.8871.43.1-1.0502.21728.74.6
  6) udreg/2.3.2-1.0502.10518.2.17.gem
  7) ugni/6.0-1.0502.10863.8.28.gem
  8) gni-headers/4.0-1.0502.10859.9.24.gem
  9) dmapp/7.0.1-1.0502.11080.8.74.gem
 10) xpmem/0.1-2.0502.64982.7.24.gem
 11) hss-llm/7.2.0
 12) Base-opts/1.0.2-1.0502.60680.2.4.gem
 13) cce/8.5.8
 14) craype-network-gemini
 15) craype/2.5.9
 16) cray-libsci/16.11.1
 17) pmi/5.0.11
 18) rca/1.0.0-2.0502.60530.1.63.gem
 19) atp/2.1.0
 20) PrgEnv-cray/5.2.82
 21) moab/9.1.2.h2-sles11
 22) torque/6.0.4
 23) craype-interlagos
 24) cray-mpich/7.5.3
 25) java/jdk1.8.0_51
 26) globus/6.0
 27) gsissh/7.5p1b
 28) xalt/0.7.6.local
 29) scripts
 30) OpenSSL/1.0.2m
 31) cURL/7.59.0
 32) git/2.17.0
 33) wget/1.19.4
 34) user-paths
 35) gnuplot/5.0.5
 36) darshan/3.1.3
 37) slurm/17.11.5
--2018-10-14 22:01:03--  https://www.cs.virginia.edu/stream/FTP/Code/stream.c
Resolving www.cs.virginia.edu... 128.143.67.11
Connecting to www.cs.virginia.edu|128.143.67.11|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 19967 (19K) [text/plain]
Saving to: ‘stream.c’

     0K .......... .........                                  100%  641K=0.03s

2018-10-14 22:01:04 (641 KB/s) - ‘stream.c’ saved [19967/19967]

cc     stream.c   -o stream
     1	#!/bin/bash
     2	cd  ~/stream-jenkins
     3	OMP_NUM_THREADS=16  ~/stream-jenkins/stream  > streamout
     4	grep Triad: streamout   | cut -d: -f2 | cut -d. -f1 > stream.datB
     5	echo YVALUE= > stream.datA
     6	paste stream.datA stream.datB > stream.triad
     7	hostname > stream-compute-node
sbatch: error: Batch job submission failed: Unable to contact slurm controller (connect failure)
cat: /u/system/bwjenkins/stream-jenkins/stream-compute-node: No such file or directory
MYJOBID=
=== RUNNING /u/staff/arnoldg/ior/wait_for_slurmjob.sh ===
/u/staff/arnoldg/ior/wait_for_slurmjob.sh: missing argument for jobid
=== JOB RAN ON ===
[SSH] exit-status: 0
[slurm-stream] $ /bin/sh -xe /tmp/jenkins7816126701316018737.sh
+ scp 'JYC_REMOTE:~/stream-jenkins/s*' /var/lib/jenkins/workspace/slurm-stream
NCSA JYC System 
Access status: User Access UnRestricted.

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM

Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/slurm-stream/stream.triad
Finished: SUCCESS