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Started by user arnoldg Building on master in workspace /var/lib/jenkins/workspace/vpic-spp-jyc executing script: set -v rm -rf vpic-spp mkdir vpic-spp cd vpic-spp/ #tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz #tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz tar xzvf ~arnoldg/vpic_spp_20161220_up_20180125.tar.gz cat build_vpic_407 | sed -e s/"\# get vpic 407 from github"/"module load wget"/g > /tmp/buildvpic cat /tmp/buildvpic | sed -e s/^wget/"wget --no-check-certificate"/g > /tmp/buildvpic2 cp /tmp/buildvpic2 ./build_vpic_407 chmod 755 build* rm /tmp/buildvpic* ./build_vpic_407 cd runs/4_nodes ./build_input_deck test_4n.cxx MYJOBID=`qsub bw.pbs` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID cp vpic.* ~/vpic-spp/ grep "simulation time" vpic.err MYSIMTIME=`grep time: vpic.err| cut -d: -f3` echo "YVALUE= $MYSIMTIME" > ~/vpic-spp/vpic.simtime cat -n ~/vpic-spp/vpic.simtime grep "real" vpic.err MYREALTIME=`grep real vpic.err| cut -d' ' -f2` echo "YVALUE= $MYREALTIME" > ~/vpic-spp/vpic.realtime cat -n ~/vpic-spp/vpic.realtime rm -rf vpic-spp mkdir vpic-spp cd vpic-spp/ #tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220.tar.gz #tar xzvf /projects/bluewaters/benchmarking/SPP/vpic/vpic_spp_20161220_up_20180125.tar.gz tar xzvf ~arnoldg/vpic_spp_20161220_up_20180125.tar.gz cat build_vpic_407 | sed -e s/"\# get vpic 407 from github"/"module load wget"/g > /tmp/buildvpic cat /tmp/buildvpic | sed -e s/^wget/"wget --no-check-certificate"/g > /tmp/buildvpic2 cp /tmp/buildvpic2 ./build_vpic_407 chmod 755 build* rm /tmp/buildvpic* ./build_vpic_407 --2018-02-27 09:02:58-- https://github.com/vpic/vpic/archive/v407.zip Resolving github.com (github.com)... 192.30.253.112, 192.30.253.113 Connecting to github.com (github.com)|192.30.253.112|:443... connected. OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version Unable to establish SSL connection. mv: cannot stat `v407': No such file or directory unzip: cannot find or open v407.zip, v407.zip.zip or v407.zip.ZIP. rm: cannot remove `v407.zip': No such file or directory ./build_vpic_407: line 12: cd: vpic-407: No such file or directory tar (child): ../spp_changes_patch.tar.gz: Cannot open: No such file or directory tar (child): Error is not recoverable: exiting now tar: Child returned status 2 tar: Error is not recoverable: exiting now build_vpic_407 ideck_bld_template README runs/ runs/4_nodes/ runs/4_nodes/build_input_deck runs/4_nodes/bw.pbs runs/4_nodes/.bw.pbs.old runs/4_nodes/test_4n.cxx runs/144_nodes/ runs/144_nodes/build_input_deck runs/144_nodes/bw.pbs runs/144_nodes/.bw.pbs.old runs/144_nodes/test_144n.cxx spp_changes_patch.tar.gz imake: No such file or directory imake: No description file. Stop. gmake: *** No rule to make target `clean'. Stop. gmake: *** No rule to make target `all'. Stop. cat: ideck_bld_template: No such file or directory cd runs/4_nodes ./build_input_deck test_4n.cxx bash: line 15: ./build_input_deck: No such file or directory MYJOBID=`qsub bw.pbs` qsub bw.pbs INFO: Job submitted to account: jnc echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID MYJOBID=230625.jyc === RUNNING /u/staff/arnoldg/ior/wait_for.sh === Tue Feb 27 09:03:01 CST 2018: waiting for 230625.jyc to finish Tue Feb 27 09:08:01 CST 2018: waiting for 230625.jyc to finish qstat: Unknown Job Id Error 230625.nid00030 cp vpic.* ~/vpic-spp/ grep "simulation time" vpic.err MYSIMTIME=`grep time: vpic.err| cut -d: -f3` grep time: vpic.err| cut -d: -f3 echo "YVALUE= $MYSIMTIME" > ~/vpic-spp/vpic.simtime cat -n ~/vpic-spp/vpic.simtime grep "real" vpic.err MYREALTIME=`grep real vpic.err| cut -d' ' -f2` grep real vpic.err| cut -d' ' -f2 echo "YVALUE= $MYREALTIME" > ~/vpic-spp/vpic.realtime cat -n ~/vpic-spp/vpic.realtime 230625.jyc finished 1 YVALUE= real 0.92 1 YVALUE= 0.92 [SSH] exit-status: 0 [vpic-spp-jyc] $ /bin/sh -xe /tmp/jenkins5082880627173334544.sh + rm -rf /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.err /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.out /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.realtime /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.simtime + scp 'JYC_REMOTE:~/vpic-spp/vpic.*' /var/lib/jenkins/workspace/vpic-spp-jyc NCSA JYC System Access status: User Access UnRestricted. Access by OTP or Two Factor Certificate Authority only. Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Restricted access during weekly scheduled maintenance on Wednesdays 10AM - 6PM Recording plot data Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.simtime Saving plot series data from: /var/lib/jenkins/workspace/vpic-spp-jyc/vpic.realtime Finished: SUCCESS