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Console Output

Started by user jkwack2
[EnvInject] - Loading node environment variables.
Building on master in workspace /var/lib/jenkins/workspace/SPP-PPM-1280-132XEs
executing script:

# Moving to the building folder
cd SPP-PPM/PPM-1280-132XEs
ls -al

# Updating modules
module unload darshan
module load craype-hugepages2M
module list

# Building the executable
rm -rf iq.h *.o PPM2F-1280 *.dat
cc -c cio.c
./compile-JK-noPapi 1280
ls -al

# Submitting the job script
MYJOBID=`qsub run-JK`
echo MYJOBID=$MYJOBID

# Waiting for the job completion
cat -n wait_for.sh
./wait_for.sh $MYJOBID

# Computing Flop/s
python FLOPS-PPM-JK-v02.py $MYJOBID 132







total 25204
drwxr-xr-x 2 bwjenkins BW_System     4096 Mar 29 11:38 .
drwxr-xr-x 4 bwjenkins BW_System     4096 Mar 29 09:46 ..
-rw-r--r-- 1 bwjenkins BW_System     1255 Oct 12 15:07 cio.c
-rw-r--r-- 1 bwjenkins BW_System     4088 Mar 29 10:16 cio.o
-rwxr--r-- 1 bwjenkins BW_System      459 Mar 29 10:12 compile-JK-noPapi
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 15:08 DATA1280.5818829.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5818829.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 16:23 DATA1280.5819321.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5819321.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 17:11 DATA1280.5819500.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5819500.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Dec  1 12:42 DATA1280.5821932.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5821932.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Dec 22 08:31 DATA1280.5927252.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5927252.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Mar 27 17:36 DATA1280.6407342.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.6407342.bw
-rw-r--r-- 1 bwjenkins BW_System     2826 Mar 29 11:38 FLOPS-PPM-JK-v02.py
-rwxr--r-- 1 bwjenkins BW_System      538 Mar 29 10:09 generate-MPICH_RANK_ORDER
-rw------- 1 bwjenkins BW_System       13 Mar 27 17:47 GFLOPS_SEC_NODE.dat
-rw-r--r-- 1 bwjenkins BW_System     2326 Oct 12 15:07 Instructions-JK.txt
-rw-r--r-- 1 bwjenkins BW_System      814 Oct 12 15:07 iq1280.h
lrwxrwxrwx 1 bwjenkins BW_System        8 Mar 29 10:16 iq.h -> iq1280.h
-rwxr-xr-x 1 bwjenkins BW_System 11186131 Mar 29 10:17 PPM2F-1280
-rw-r--r-- 1 bwjenkins BW_System  2280059 Oct 12 15:07 PPM2F-tp3-5-1-12-ICF-short-loops.F
-rw-r--r-- 1 bwjenkins BW_System  4475832 Mar 29 10:17 PPM2F-tp3-5-1-12-ICF-short-loops.lst
-rw-r--r-- 1 bwjenkins BW_System   882304 Mar 29 10:17 PPM2F-tp3-5-1-12-ICF-short-loops.o
-rw-r--r-- 1 bwjenkins BW_System  6375661 Mar 29 10:17 PPM2F-tp3-5-1-12-ICF-short-loops.s
-rw------- 1 bwjenkins BW_System     6413 Nov 30 15:16 PPM4Fperf.ppm.5818829.bw
-rw------- 1 bwjenkins BW_System     6413 Nov 30 16:31 PPM4Fperf.ppm.5819321.bw
-rw------- 1 bwjenkins BW_System     6413 Nov 30 17:19 PPM4Fperf.ppm.5819500.bw
-rw------- 1 bwjenkins BW_System     6413 Dec  1 12:50 PPM4Fperf.ppm.5821932.bw
-rw------- 1 bwjenkins BW_System     6413 Dec 22 08:39 PPM4Fperf.ppm.5927252.bw
-rw------- 1 bwjenkins BW_System     6413 Mar 27 17:44 PPM4Fperf.ppm.6407342.bw
-rw------- 1 bwjenkins BW_System     1971 Nov 30 15:20 PPM-xe-1280.o5818829
-rw------- 1 bwjenkins BW_System     1971 Nov 30 16:35 PPM-xe-1280.o5819321
-rw------- 1 bwjenkins BW_System     1649 Nov 30 17:23 PPM-xe-1280.o5819500
-rw------- 1 bwjenkins BW_System     1649 Dec  1 12:54 PPM-xe-1280.o5821932
-rw------- 1 bwjenkins BW_System     1649 Dec 22 08:43 PPM-xe-1280.o5927252
-rw------- 1 bwjenkins BW_System     1649 Mar 27 17:47 PPM-xe-1280.o6407342
-rw-r--r-- 1 bwjenkins BW_System      837 Mar 29 10:22 run-JK
-rw-r--r-- 1 bwjenkins BW_System      101 Oct 12 15:08 source_me_JK
-rw------- 1 bwjenkins BW_System    73331 Nov 30 15:20 stderrout.5818829.bw
-rw------- 1 bwjenkins BW_System    73896 Nov 30 16:35 stderrout.5819321.bw
-rw------- 1 bwjenkins BW_System    73644 Nov 30 17:22 stderrout.5819500.bw
-rw------- 1 bwjenkins BW_System    72940 Dec  1 12:54 stderrout.5821932.bw
-rw------- 1 bwjenkins BW_System    72882 Dec 22 08:43 stderrout.5927252.bw
-rw------- 1 bwjenkins BW_System    71755 Mar 27 17:47 stderrout.6407342.bw
-rw------- 1 bwjenkins BW_System       12 Mar 27 17:47 TFLOPS_SEC-AGG.dat
-rwxr--r-- 1 bwjenkins BW_System      223 Oct 18 16:32 wait_for.sh
Currently Loaded Modulefiles:
  1) modules/3.2.10.4
  2) eswrap/1.3.3-1.020200.1278.0
  3) cce/8.4.6
  4) craype-network-gemini
  5) craype/2.5.8
  6) cray-libsci/16.11.1
  7) udreg/2.3.2-1.0502.10518.2.17.gem
  8) ugni/6.0-1.0502.10863.8.28.gem
  9) pmi/5.0.10-1.0000.11050.179.3.gem
 10) dmapp/7.0.1-1.0502.11080.8.74.gem
 11) gni-headers/4.0-1.0502.10859.7.8.gem
 12) xpmem/0.1-2.0502.64982.5.3.gem
 13) dvs/2.5_0.9.0-1.0502.2188.1.113.gem
 14) alps/5.2.4-2.0502.9774.31.12.gem
 15) rca/1.0.0-2.0502.60530.1.63.gem
 16) atp/2.0.4
 17) PrgEnv-cray/5.2.82
 18) cray-mpich/7.5.0
 19) craype-interlagos
 20) torque/6.0.3
 21) moab/9.0.2.TAS2-1477409647_6706986-sles11
 22) java/jdk1.8.0_51
 23) globus/5.2.5
 24) gsissh/6.2p2
 25) scripts
 26) user-paths
 27) xalt/0.7.6
 28) craype-hugepages2M

      if (ifthunder .gt. 0)   fv1 = .01
ftn-7212 crayftn: WARNING SETCONSTS, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 2913 
  Variable "ifthunder" is used before it is defined.

      call setconsts (g,TransitionThickness,DisplaceAmpl,power,
ftn-7212 crayftn: WARNING MASTER, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 4008 
  Variable "ifthunder" is used before it is defined.

      call setaaa (g,TransitionThickness,DisplaceAmpl,
           ^                                           
ftn-3141 crayftn: WARNING MASTER, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 4119, Column = 12 
  Static variable "yavglob" in "master" overlaps a callee static variable "aaa" in "setaaa".

         write (6,*) (perfdata(ioff+i),i=1,53),'   mysrc =',mysrc
ftn-7212 crayftn: WARNING MASTER, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 4350 
  Variable "mysrc" is used before it is defined.

      return 
      ^       
ftn-362 crayftn: WARNING MASTER, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 5333, Column = 7 
  This statement can not be reached.

            write (6,*) 'jj =',jj,'     jbrick =',jbrick
ftn-7212 crayftn: WARNING BUILDPROF, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 6841 
  Variable "jbrick" is used before it is defined.

      call setconsts (g,TransitionThickness,DisplaceAmpl,power,
ftn-7212 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 9492 
  Variable "ifthunder" is used before it is defined.

      call setaaa (g,TransitionThickness,DisplaceAmpl,
           ^                                           
ftn-3141 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 10254, Column = 12 
  Static variable "globthist" in "workerbee" overlaps a callee static variable "aaa" in "setaaa".

               deet = abs(time- (scalabilityt2 + scalabilitytimed/8) )
ftn-7212 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 12889 
  Variable "scalabilityt2" is used before it is defined.

                  deet = abs(time- (scalabilityt3 + scalabilitytimed/8))
ftn-7212 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 12899 
  Variable "scalabilityt3" is used before it is defined.

      call updatesubbrickx(ibrick,jbrick,kbrick,mbrick,
           ^                                            
ftn-3141 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 14001, Column = 12 
  Static variable "aaagrid" in "workerbee" overlaps a callee static variable "zzf" in "updatesubbrickx".

      call updatesubbrickz(ibrick,jbrick,kbrick,mbrick,
           ^                                            
ftn-3141 crayftn: WARNING WORKERBEE, File = PPM2F-tp3-5-1-12-ICF-short-loops.F, Line = 14251, Column = 12 
  Static variable "aaagrid" in "workerbee" overlaps a callee static variable "zzf" in "updatesubbrickz".

total 23437
drwxr-xr-x 2 bwjenkins BW_System     4096 Mar 29 11:39 .
drwxr-xr-x 4 bwjenkins BW_System     4096 Mar 29 09:46 ..
-rw-r--r-- 1 bwjenkins BW_System     1255 Oct 12 15:07 cio.c
-rw-r--r-- 1 bwjenkins BW_System     4088 Mar 29 11:39 cio.o
-rwxr--r-- 1 bwjenkins BW_System      459 Mar 29 10:12 compile-JK-noPapi
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 15:08 DATA1280.5818829.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5818829.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 16:23 DATA1280.5819321.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5819321.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Nov 30 17:11 DATA1280.5819500.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5819500.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Dec  1 12:42 DATA1280.5821932.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5821932.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Dec 22 08:31 DATA1280.5927252.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.5927252.bw
lrwxrwxrwx 1 bwjenkins BW_System       53 Mar 27 17:36 DATA1280.6407342.bw -> /scratch/system/bwjenkins/SPP-PPM/DATA1280.6407342.bw
-rw-r--r-- 1 bwjenkins BW_System     2826 Mar 29 11:38 FLOPS-PPM-JK-v02.py
-rwxr--r-- 1 bwjenkins BW_System      538 Mar 29 10:09 generate-MPICH_RANK_ORDER
-rw-r--r-- 1 bwjenkins BW_System     2326 Oct 12 15:07 Instructions-JK.txt
-rw-r--r-- 1 bwjenkins BW_System      814 Oct 12 15:07 iq1280.h
lrwxrwxrwx 1 bwjenkins BW_System        8 Mar 29 11:39 iq.h -> iq1280.h
-rwxr-xr-x 1 bwjenkins BW_System 11186131 Mar 29 11:39 PPM2F-1280
-rw-r--r-- 1 bwjenkins BW_System  2280059 Oct 12 15:07 PPM2F-tp3-5-1-12-ICF-short-loops.F
-rw-r--r-- 1 bwjenkins BW_System  4475832 Mar 29 11:39 PPM2F-tp3-5-1-12-ICF-short-loops.lst
-rw-r--r-- 1 bwjenkins BW_System   882304 Mar 29 11:39 PPM2F-tp3-5-1-12-ICF-short-loops.o
-rw-r--r-- 1 bwjenkins BW_System  6375661 Mar 29 11:39 PPM2F-tp3-5-1-12-ICF-short-loops.s
-rw------- 1 bwjenkins BW_System     6413 Nov 30 15:16 PPM4Fperf.ppm.5818829.bw
-rw------- 1 bwjenkins BW_System     6413 Nov 30 16:31 PPM4Fperf.ppm.5819321.bw
-rw------- 1 bwjenkins BW_System     6413 Nov 30 17:19 PPM4Fperf.ppm.5819500.bw
-rw------- 1 bwjenkins BW_System     6413 Dec  1 12:50 PPM4Fperf.ppm.5821932.bw
-rw------- 1 bwjenkins BW_System     6413 Dec 22 08:39 PPM4Fperf.ppm.5927252.bw
-rw------- 1 bwjenkins BW_System     6413 Mar 27 17:44 PPM4Fperf.ppm.6407342.bw
-rw------- 1 bwjenkins BW_System     1971 Nov 30 15:20 PPM-xe-1280.o5818829
-rw------- 1 bwjenkins BW_System     1971 Nov 30 16:35 PPM-xe-1280.o5819321
-rw------- 1 bwjenkins BW_System     1649 Nov 30 17:23 PPM-xe-1280.o5819500
-rw------- 1 bwjenkins BW_System     1649 Dec  1 12:54 PPM-xe-1280.o5821932
-rw------- 1 bwjenkins BW_System     1649 Dec 22 08:43 PPM-xe-1280.o5927252
-rw------- 1 bwjenkins BW_System     1649 Mar 27 17:47 PPM-xe-1280.o6407342
-rw-r--r-- 1 bwjenkins BW_System      851 Mar 29 11:39 run-JK
-rw-r--r-- 1 bwjenkins BW_System      101 Oct 12 15:08 source_me_JK
-rw------- 1 bwjenkins BW_System    73331 Nov 30 15:20 stderrout.5818829.bw
-rw------- 1 bwjenkins BW_System    73896 Nov 30 16:35 stderrout.5819321.bw
-rw------- 1 bwjenkins BW_System    73644 Nov 30 17:22 stderrout.5819500.bw
-rw------- 1 bwjenkins BW_System    72940 Dec  1 12:54 stderrout.5821932.bw
-rw------- 1 bwjenkins BW_System    72882 Dec 22 08:43 stderrout.5927252.bw
-rw------- 1 bwjenkins BW_System    71755 Mar 27 17:47 stderrout.6407342.bw
-rwxr--r-- 1 bwjenkins BW_System      223 Oct 18 16:32 wait_for.sh
Job submitted to account: jnc
MYJOBID=6413800.bw
     1	#!/bin/bash
     2	echo "=== RUNNING $0 ==="
     3	
     4	while true
     5	do
     6	
     7		MYQSTAT=`qstat $1`
     8		if test "$MYQSTAT" = ""
     9	        then
    10			echo $1 finished
    11			exit
    12		else
    13			DATE=`date`
    14			echo "$DATE: waiting for $1 to finish"
    15	
    16		fi
    17	
    18		sleep 5m
    19	
    20	done
    21	
    22	
=== RUNNING ./wait_for.sh ===
Wed Mar 29 11:39:53 CDT 2017: waiting for 6413800.bw to finish
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qstat: Unknown Job Id Error 6413800.bw
6413800.bw finished
PPM4Fperf.ppm.6413800.bw
stderrout.6413800.bw
     Number of Compute Node =  132.0
     Number of Dumps =  2
     Ndump      Flop/s per Cell 
         1         3.85432e+03
         2         3.85935e+03
     Average of FLOP/s per zone =  3.85684e+03
     Number of time-steps =  500
     Grid size, N =  1280.0
     Wall time =      702 seconds
     TFlops/sec aggregate =    5.761  
     Gflops/sec/node =   43.644 
[SSH] exit-status: 0
[SPP-PPM-1280-132XEs] $ /bin/sh -xe /tmp/jenkins2727386657312292727.sh
+ scp BW_REMOTE:/u/system/bwjenkins/SPP-PPM/PPM-1280-132XEs/GFLOPS_SEC_NODE.dat /var/lib/jenkins/workspace/SPP-PPM-1280-132XEs

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Blue Waters down for maintenance that started on Tuesday Mar 28th, at
12:01am (midnight), extending to Wednesday Mar 29th 04:00pm.

Blue Waters Admin Team
+ scp BW_REMOTE:/u/system/bwjenkins/SPP-PPM/PPM-1280-132XEs/TFLOPS_SEC-AGG.dat /var/lib/jenkins/workspace/SPP-PPM-1280-132XEs

Access by OTP or Two Factor Certificate Authority only.
Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access.
gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access.

Blue Waters down for maintenance that started on Tuesday Mar 28th, at
12:01am (midnight), extending to Wednesday Mar 29th 04:00pm.

Blue Waters Admin Team
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/SPP-PPM-1280-132XEs/GFLOPS_SEC_NODE.dat
Saving plot series data from: /var/lib/jenkins/workspace/SPP-PPM-1280-132XEs/TFLOPS_SEC-AGG.dat
Sending e-mails to: [email protected]
Finished: SUCCESS