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Started by user tbouvet Started by user Greg Bauer [EnvInject] - Loading node environment variables. Building on master in workspace /var/lib/jenkins/workspace/psdns-spp executing script: rm -rf psdns-spp/ mkdir psdns-spp cd psdns-spp tar xzf /projects/bluewaters/benchmarking/PSDNS_nov2016/spp_PSDNS.tar.gz cd spp_PSDNS/PSDNS/ module load fftw module load cray-hdf5-parallel module load craype-hugepages2M make cleanest make srcmake make cd ../dir_runs128 echo "cat -n eulstat > ~/psdns-spp/eulstat.txt " >> batch cat -n batch MYJOBID=`qsub batch` echo MYJOBID=$MYJOBID ~arnoldg/ior/wait_for.sh $MYJOBID /bin/rm: cannot remove `*.o': No such file or directory /bin/rm: cannot remove `*.mod': No such file or directory /bin/rm: cannot remove `*.lst': No such file or directory make: [cleanest] Error 1 (ignored) /bin/rm *.o *.mod *.lst files cleaned rm -rf .srcmake removed .srcmake deleting .srcmake rm -rf .srcmake constructing .srcmake mkdir -v -p .srcmake/nullhooks/diagnostics mkdir: created directory `.srcmake' mkdir: created directory `.srcmake/nullhooks' mkdir: created directory `.srcmake/nullhooks/diagnostics' mkdir -v -p .srcmake/nullhooks/initial_conditions mkdir: created directory `.srcmake/nullhooks/initial_conditions' mkdir -v -p .srcmake/nullhooks/LAG mkdir: created directory `.srcmake/nullhooks/LAG' mkdir -v -p .srcmake/nullhooks/stratification mkdir: created directory `.srcmake/nullhooks/stratification' mkdir -v -p .srcmake/hooks/diagnostics mkdir: created directory `.srcmake/hooks' mkdir: created directory `.srcmake/hooks/diagnostics' mkdir -v -p .srcmake/hooks/initial_conditions mkdir: created directory `.srcmake/hooks/initial_conditions' mkdir -v -p .srcmake/hooks/LAG mkdir: created directory `.srcmake/hooks/LAG' mkdir -v -p .srcmake/hooks/LAG_PIPE mkdir: created directory `.srcmake/hooks/LAG_PIPE' mkdir -v -p .srcmake/hooks/LAG_LOCAL mkdir: created directory `.srcmake/hooks/LAG_LOCAL' mkdir -v -p .srcmake/hooks/stratification mkdir: created directory `.srcmake/hooks/stratification' mkdir -v -p .srcmake/hooks/stratification/BOUSS mkdir: created directory `.srcmake/hooks/stratification/BOUSS' mkdir -v -p .srcmake/homogeneous mkdir: created directory `.srcmake/homogeneous' mkdir -v -p .srcmake/inhomogeneous/channel mkdir: created directory `.srcmake/inhomogeneous' mkdir: created directory `.srcmake/inhomogeneous/channel' mkdir -v -p .srcmake/inhomogeneous/bl mkdir: created directory `.srcmake/inhomogeneous/bl' srcmake folders generated: code can now be compiled /lib/cpp -traditional -P -DCAF -DKXCOMM2 -DCLEAN -DFRESH -P -DBOXPHY -DRKFOUR -DRANDOM_SEED -DEPFOR -DDOUBLE_PREC -DREADR -DFFTW -DHOMOGENEOUS -DBAL_PERIOD=4 -DREVERSE_DIMS -DUSE_EVEN -DOUT1D -DINPUT_PEN -DOUTPUT_PEN -DSHELL_DK -DSUBDIR -DLVSTEP -DMODEL_SPECTRUM module.f .srcmake/module.f Error: cray-hdf5-parallel/1.8.11 is not compatible with cce/8.4.6. Either: module swap cray-hdf5-parallel cray-hdf5-parallel/(1.8.13 or newer) or module swap cce cce/(older than 8.3.0) make: *** [module.o] Error 1 ftn -c -I. -Ofp3,scalar3,thread0 -N132 -hcaf -hnoomp -sreal64 -I/opt/cray/fftw/3.3.4.10/interlagos/include .srcmake/module.f 1 #!/bin/bash 2 #PBS -N PSDNS.128node 3 #PBS -l nodes=128:ppn=32:xe 4 #PBS -l walltime=00:20:00 5 #PBS -o stdout.$PBS_JOBID 6 #PBS -e stderr.$PBS_JOBID 7 #PBS -q normal 8 ##PBS -A ?? 9 ##PBS -M <EMAIL ADDRESS HERE> 10 11 # for echoing commands 12 set -x 13 14 cd $PBS_O_WORKDIR 15 16 #module unload altd 17 #module unload CrayPat 18 module load fftw 19 module load cray-hdf5-parallel 20 module load craype-hugepages2M 21 22 # for perftools 23 #module load unload darshan 24 #module load unload xalt 25 #module load perftools-base 26 #module load perftools-lite 27 28 export XT_SYMMETRIC_HEAP_SIZE=200M 29 export APRUN_BALANCED_INJECTION=64 30 export ATP_ENABLED=1 31 32 # Execution block. 33 EXE="../PSDNS/DNS2d_mpi_p8_CAF.x" 34 aprun -N32 -n4096 -d1 ${EXE} 35 cat -n eulstat > ~/psdns-spp/eulstat.txt Job submitted to account: jnc MYJOBID=6412336.bw === RUNNING /u/staff/arnoldg/ior/wait_for.sh === Wed Mar 29 08:59:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:04:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:09:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:14:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:19:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:24:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:29:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:34:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:39:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:44:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:49:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:54:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 09:59:20 CDT 2017: waiting for 6412336.bw to finish Wed Mar 29 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Use myproxy-logon -s tfca.ncsa.illinois.edu -p 7512 for gsissh access. gsissh or ssh -o PreferredAuthentications=keyboard-interactive for otp access. Blue Waters down for maintenance that started on Tuesday Mar 28th, at 12:01am (midnight), extending to Wednesday Mar 29th 04:00pm. Blue Waters Admin Team Finished: SUCCESS