Skipping 472 KB.. Full Log

CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_pair.cpp > compute_pair.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_omega_chunk.cpp > compute_omega_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd_nongauss.cpp > compute_msd_nongauss.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd.cpp > compute_msd.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_msd_chunk.cpp > compute_msd_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_t_atom.cpp > compute_meso_t_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_rho_atom.cpp > compute_meso_rho_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_meso_e_atom.cpp > compute_meso_e_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_rigid.cpp > compute_ke_rigid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_eff.cpp > compute_ke_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke.cpp > compute_ke.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_atom_eff.cpp > compute_ke_atom_eff.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ke_atom.cpp > compute_ke_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_inertia_chunk.cpp > compute_inertia_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_improper_local.cpp > compute_improper_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_heat_flux.cpp > compute_heat_flux.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_gyration.cpp > compute_gyration.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_gyration_chunk.cpp > compute_gyration_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_group_group.cpp > compute_group_group.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_fep.cpp > compute_fep.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_event_displace.cpp > compute_event_displace.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_sphere.cpp > compute_erotate_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_sphere_atom.cpp > compute_erotate_sphere_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_rigid.cpp > compute_erotate_rigid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_erotate_asphere.cpp > compute_erotate_asphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_displace_atom.cpp > compute_displace_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_dilatation_atom.cpp > compute_dilatation_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_dihedral_local.cpp > compute_dihedral_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_damage_atom.cpp > compute_damage_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute.cpp > compute.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_coord_atom.cpp > compute_coord_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_contact_atom.cpp > compute_contact_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_com.cpp > compute_com.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_com_chunk.cpp > compute_com_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_cna_atom.cpp > compute_cna_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_cluster_atom.cpp > compute_cluster_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_chunk_atom.cpp > compute_chunk_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_centro_atom.cpp > compute_centro_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_bond_local.cpp > compute_bond_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_body_local.cpp > compute_body_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_basal_atom.cpp > compute_basal_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_angmom_chunk.cpp > compute_angmom_chunk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_angle_local.cpp > compute_angle_local.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../compute_ackland_atom.cpp > compute_ackland_atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_tiled.cpp > comm_tiled.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_kokkos.cpp > comm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm.cpp > comm.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../comm_brick.cpp > comm_brick.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../colvarproxy_lammps.cpp > colvarproxy_lammps.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../citeme.cpp > citeme.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../change_box.cpp > change_box.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_table_omp.cpp > bond_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_table.cpp > bond_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_quartic_omp.cpp > bond_quartic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_quartic.cpp > bond_quartic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_nonlinear_omp.cpp > bond_nonlinear_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_nonlinear.cpp > bond_nonlinear.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_morse_omp.cpp > bond_morse_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_morse.cpp > bond_morse.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_hybrid.cpp > bond_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_omp.cpp > bond_harmonic_shift_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_cut_omp.cpp > bond_harmonic_shift_cut_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift_cut.cpp > bond_harmonic_shift_cut.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_shift.cpp > bond_harmonic_shift.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_omp.cpp > bond_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic_kokkos.cpp > bond_harmonic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_harmonic.cpp > bond_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_omp.cpp > bond_fene_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_kokkos.cpp > bond_fene_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_expand_omp.cpp > bond_fene_expand_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene_expand.cpp > bond_fene_expand.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_fene.cpp > bond_fene.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond.cpp > bond.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_class2_omp.cpp > bond_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../bond_class2.cpp > bond_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../body_nparticle.cpp > body_nparticle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../body.cpp > body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../balance.cpp > balance.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_tri.cpp > atom_vec_tri.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_template.cpp > atom_vec_template.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_sphere.cpp > atom_vec_sphere.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_peri.cpp > atom_vec_peri.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_molecular_kokkos.cpp > atom_vec_molecular_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_molecular.cpp > atom_vec_molecular.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_meso.cpp > atom_vec_meso.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_line.cpp > atom_vec_line.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_kokkos.cpp > atom_vec_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_hybrid.cpp > atom_vec_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_full_kokkos.cpp > atom_vec_full_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_full.cpp > atom_vec_full.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_ellipsoid.cpp > atom_vec_ellipsoid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_electron.cpp > atom_vec_electron.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_dipole.cpp > atom_vec_dipole.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec.cpp > atom_vec.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_charge_kokkos.cpp > atom_vec_charge_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_charge.cpp > atom_vec_charge.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_bond_kokkos.cpp > atom_vec_bond_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_bond.cpp > atom_vec_bond.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_body.cpp > atom_vec_body.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_atomic_kokkos.cpp > atom_vec_atomic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_atomic.cpp > atom_vec_atomic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_angle_kokkos.cpp > atom_vec_angle_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_vec_angle.cpp > atom_vec_angle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_map.cpp > atom_map.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom_kokkos.cpp > atom_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../atom.cpp > atom.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_table_omp.cpp > angle_table_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_table.cpp > angle_table.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_sdk_omp.cpp > angle_sdk_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_sdk.cpp > angle_sdk.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_quartic_omp.cpp > angle_quartic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_quartic.cpp > angle_quartic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_hybrid.cpp > angle_hybrid.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic_omp.cpp > angle_harmonic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic_kokkos.cpp > angle_harmonic_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_harmonic.cpp > angle_harmonic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_simple_omp.cpp > angle_fourier_simple_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_simple.cpp > angle_fourier_simple.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier_omp.cpp > angle_fourier_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_fourier.cpp > angle_fourier.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_dipole_omp.cpp > angle_dipole_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_dipole.cpp > angle_dipole.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle.cpp > angle.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_squared_omp.cpp > angle_cosine_squared_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_squared.cpp > angle_cosine_squared.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_omp.cpp > angle_cosine_shift_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_exp_omp.cpp > angle_cosine_shift_exp_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift_exp.cpp > angle_cosine_shift_exp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_shift.cpp > angle_cosine_shift.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_periodic_omp.cpp > angle_cosine_periodic_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_periodic.cpp > angle_cosine_periodic.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_omp.cpp > angle_cosine_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_delta_omp.cpp > angle_cosine_delta_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine_delta.cpp > angle_cosine_delta.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_cosine.cpp > angle_cosine.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_class2_omp.cpp > angle_class2_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_class2.cpp > angle_class2.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm_omp.cpp > angle_charmm_omp.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm_kokkos.cpp > angle_charmm_kokkos.d
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64 -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -M ../angle_charmm.cpp > angle_charmm.d
make[1]: Leaving directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu5.1.0/lammps-15May15/src/Obj_xc30'
make[1]: Entering directory `/mnt/abc/scratch/system/bwjenkins/tests/lammps/15May15/cle5.2_gnu5.1.0/lammps-15May15/src/Obj_xc30'
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_charmm_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_delta.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_delta_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_periodic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_periodic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_exp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_exp_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_shift_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_squared.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_cosine_squared_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_dipole.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_dipole_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_simple.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_fourier_simple_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_quartic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_quartic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_sdk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_sdk_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../angle_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_map.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_angle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_angle_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_atomic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_atomic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_bond.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_bond_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_charge.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_charge_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_dipole.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_electron.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_ellipsoid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_full.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_full_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_line.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_meso.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_molecular.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_molecular_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_peri.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_template.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../atom_vec_tri.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../balance.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../body.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../body_nparticle.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_class2.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_class2_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_expand.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_expand_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_fene_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_cut.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_cut_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_harmonic_shift_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_hybrid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_morse.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_morse_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_nonlinear.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_nonlinear_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_quartic.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_quartic_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_table.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../bond_table_omp.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../change_box.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../citeme.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../colvarproxy_lammps.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_brick.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_kokkos.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../comm_tiled.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_ackland_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_angle_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_angmom_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_basal_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_body_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_bond_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_centro_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_chunk_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_cluster_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_cna_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_com_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_com.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_contact_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_coord_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_damage_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_dihedral_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_dilatation_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_displace_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_asphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_rigid.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_sphere_atom.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_erotate_sphere.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_event_displace.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_fep.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_group_group.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_gyration_chunk.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_gyration.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_heat_flux.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_improper_local.cpp
CC -O3 -ffast-math -fstrict-aliasing -fomit-frame-pointer -finline-functions -DLAMMPS_MEMALIGN=64  -DLAMMPS_GZIP -DLMP_USER_OMP -DLMP_USER_INTEL -I../../lib/colvars -I../../lib/reax -I../../lib/poems -DLMP_MPIIO -I../../lib/meam -DLMP_KOKKOS  -DMPICH_SKIP_MPICXX -DFFT_FFTW3     -I../../lib/kokkos/core/src -I../../lib/kokkos/containers/src -I../../lib/kokkos/algorithms/src -I../../lib/kokkos/linalg/src -I../ -DKOKKOS_DONT_INCLUDE_CORE_CONFIG_H  -DKOKKOS_HAVE_PTHREAD -DKOKKOS_HAVE_OPENMP  -fopenmp --std=c++11 -DKOKKOS_HAVE_CXX11  -c ../compute_inertia_chunk.cpp
Build was aborted
Aborted by tbouvet
Recording plot data
Saving plot series data from: /var/lib/jenkins/workspace/LAMMPS/cputime
Saving plot series data from: /var/lib/jenkins/workspace/LAMMPS/memory
Finished: ABORTED